2024-04-05T00:27:56,742 Created temporary directory: /tmp/pip-build-tracker-gx1_wd12 2024-04-05T00:27:56,743 Initialized build tracking at /tmp/pip-build-tracker-gx1_wd12 2024-04-05T00:27:56,744 Created build tracker: /tmp/pip-build-tracker-gx1_wd12 2024-04-05T00:27:56,744 Entered build tracker: /tmp/pip-build-tracker-gx1_wd12 2024-04-05T00:27:56,745 Created temporary directory: /tmp/pip-wheel-vd31guce 2024-04-05T00:27:56,749 Created temporary directory: /tmp/pip-ephem-wheel-cache-chfmnlbd 2024-04-05T00:27:56,771 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-05T00:27:56,775 2 location(s) to search for versions of biomero: 2024-04-05T00:27:56,775 * https://pypi.org/simple/biomero/ 2024-04-05T00:27:56,775 * https://www.piwheels.org/simple/biomero/ 2024-04-05T00:27:56,775 Fetching project page and analyzing links: https://pypi.org/simple/biomero/ 2024-04-05T00:27:56,776 Getting page https://pypi.org/simple/biomero/ 2024-04-05T00:27:56,778 Found index url https://pypi.org/simple/ 2024-04-05T00:27:56,918 Fetched page https://pypi.org/simple/biomero/ as application/vnd.pypi.simple.v1+json 2024-04-05T00:27:56,922 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/62/48/c77a7d502ed23e824988527ffe744d77ec3692bf373f5dffb6406149f55e/biomero-1.2.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:56,923 Found link https://files.pythonhosted.org/packages/37/4b/4934e30b8ac7f859e20ce2f33ebb9d9de0c2611fd419587e840b457da994/biomero-1.2.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.2.0 2024-04-05T00:27:56,924 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/ba/59/df01007bae6d10f7a894eb8f067b19a6fc1c85cef3621532c552c8a5d83c/biomero-1.3.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:56,925 Found link https://files.pythonhosted.org/packages/93/66/6f3ba130c6ab15b10a0fc92683db7f8a6d0a60df0c00311f3011d8801db2/biomero-1.3.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.3.0 2024-04-05T00:27:56,926 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/97/35/d6b2ca0b76deaab237094daa9fb4b6c86df67ef59f07510c101082235d8d/biomero-1.4.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:56,927 Found link https://files.pythonhosted.org/packages/72/2d/612e4f8aedcfd6a0aca21b7896a9ca74e18fdbc382538f411fbe4e403fe4/biomero-1.4.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.4.0 2024-04-05T00:27:56,928 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/f2/2a/58f8f3897d6bfffb13375cb3f67dc4776773852b6cb89c00b45317a93854/biomero-1.5.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:56,929 Found link https://files.pythonhosted.org/packages/22/5d/beb526e718ea20582a7a10ef277d10f2907723f2dd0bf57465a8f406f27e/biomero-1.5.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.5.0 2024-04-05T00:27:56,930 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/03/8f/4f9506b39fa51bf565e2354dc887ec53ede58150a86a18b92f6bfd8c72a8/biomero-1.5.1-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:56,931 Found link https://files.pythonhosted.org/packages/98/96/a628cef6b3ed1f89ab3bca30285b46e477bb01bd7fdf6a63e68a0f85c769/biomero-1.5.1.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.5.1 2024-04-05T00:27:56,932 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/ab/be/922b8b35d2c4a9c317c1095c71c1bcc74443be8f04b2a6ac85cbc2892a78/biomero-1.6.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:56,933 Found link https://files.pythonhosted.org/packages/7c/dc/65d7e481ab81cb06ce680bbe77a95f336261381813135dbc6aa0f0cdb1e3/biomero-1.6.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.6.0 2024-04-05T00:27:56,933 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/93/eb/9d2f80d33477bd9d6299ad0b29898a77c18e449e9bfa6c3656562a3f69b9/biomero-1.7.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:56,935 Found link https://files.pythonhosted.org/packages/e1/9e/104955b6bb3f34d32fde7b9d1f4be5d5f46a45b25afbee449ac44c905a72/biomero-1.7.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.7.0 2024-04-05T00:27:56,935 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/39/f4/ca212a8abbb68d2c32d48cab43cf6fe1622a5317a4e4300154dafe9b9862/biomero-1.7.1-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:56,936 Found link https://files.pythonhosted.org/packages/b5/28/c5ae875aa13bd7c8c9aec910812c2fd816fffd196d65f63b8a142181fd33/biomero-1.7.1.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.7.1 2024-04-05T00:27:56,937 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/21/d9/c167814a1abc31271e77ad77422f04554cd41b18f62572e12c4f57e0d446/biomero-1.8.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:56,938 Found link https://files.pythonhosted.org/packages/c4/f3/5e41f475114acc86b9c5fc20fe702136efe2cfd9a93d877db1b6dd619297/biomero-1.8.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.8.0 2024-04-05T00:27:56,939 Fetching project page and analyzing links: https://www.piwheels.org/simple/biomero/ 2024-04-05T00:27:56,939 Getting page https://www.piwheels.org/simple/biomero/ 2024-04-05T00:27:56,940 Found index url https://www.piwheels.org/simple/ 2024-04-05T00:27:57,275 Fetched page https://www.piwheels.org/simple/biomero/ as text/html 2024-04-05T00:27:57,279 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.7.1-py3-none-any.whl#sha256=d2aec9750cfab56583a01cbd08b734569956b5d4a5a0c524e6b57bc8d76338b4 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:57,280 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.7.0-py3-none-any.whl#sha256=df715c10bf0a3fe33bd73a44c98bf4b4b75bf0c70d3deb65f4dda3d3813b85e1 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:57,280 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.6.0-py3-none-any.whl#sha256=f881953b98a86ee2c1508c007dec8ba9b09f98951d65e81405903f1b4efc8515 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:57,281 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.5.1-py3-none-any.whl#sha256=419f808c9c52525df6108fbd48d53e82cc965e9857500c4544041a791dd4d65e (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:57,281 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.5.0-py3-none-any.whl#sha256=da32037e690913b648bc08b4cf95219e51618920116abdb024914dc4b29393fd (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:57,282 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.4.0-py3-none-any.whl#sha256=06a09b9974b9782c3d527bf0ab8d67349261b9af71c6aa3ebf12f342eddd9286 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:57,282 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.3.0-py3-none-any.whl#sha256=e87fb4e5b3565cfa3b27830d8d1d1bff5c1054bfb032d2e6055e966ef84df39d (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:57,283 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.2.0-py3-none-any.whl#sha256=0a3d446aaed8e43c191ec7b78fd1731e91935fd1e432bde72a96689be19f8dbf (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-04-05T00:27:57,284 Skipping link: not a file: https://www.piwheels.org/simple/biomero/ 2024-04-05T00:27:57,285 Skipping link: not a file: https://pypi.org/simple/biomero/ 2024-04-05T00:27:57,304 Given no hashes to check 1 links for project 'biomero': discarding no candidates 2024-04-05T00:27:57,321 Collecting biomero==1.8.0 2024-04-05T00:27:57,324 Created temporary directory: /tmp/pip-unpack-7e_mkjcz 2024-04-05T00:27:57,557 Downloading biomero-1.8.0.tar.gz (1.1 MB) 2024-04-05T00:27:58,054 Added biomero==1.8.0 from https://files.pythonhosted.org/packages/c4/f3/5e41f475114acc86b9c5fc20fe702136efe2cfd9a93d877db1b6dd619297/biomero-1.8.0.tar.gz to build tracker '/tmp/pip-build-tracker-gx1_wd12' 2024-04-05T00:27:58,061 Created temporary directory: /tmp/pip-build-env-p5qhjbat 2024-04-05T00:27:58,066 Installing build dependencies: started 2024-04-05T00:27:58,067 Running command pip subprocess to install build dependencies 2024-04-05T00:27:59,722 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-05T00:28:00,277 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-05T00:28:01,991 Collecting setuptools>=45 2024-04-05T00:28:02,009 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-04-05T00:28:02,333 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-04-05T00:28:02,349 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2024-04-05T00:28:02,692 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-04-05T00:28:02,712 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-04-05T00:28:02,832 Collecting typing-extensions (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-04-05T00:28:02,850 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.10.0-py3-none-any.whl (33 kB) 2024-04-05T00:28:05,411 Installing collected packages: typing-extensions, setuptools, packaging, setuptools_scm 2024-04-05T00:28:08,454 Successfully installed packaging-24.0 setuptools-69.2.0 setuptools_scm-8.0.4 typing-extensions-4.10.0 2024-04-05T00:28:09,042 Installing build dependencies: finished with status 'done' 2024-04-05T00:28:09,046 Getting requirements to build wheel: started 2024-04-05T00:28:09,047 Running command Getting requirements to build wheel 2024-04-05T00:28:09,954 running egg_info 2024-04-05T00:28:09,959 writing biomero.egg-info/PKG-INFO 2024-04-05T00:28:09,965 writing dependency_links to biomero.egg-info/dependency_links.txt 2024-04-05T00:28:09,968 writing requirements to biomero.egg-info/requires.txt 2024-04-05T00:28:09,969 writing top-level names to biomero.egg-info/top_level.txt 2024-04-05T00:28:10,013 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-05T00:28:10,017 reading manifest file 'biomero.egg-info/SOURCES.txt' 2024-04-05T00:28:10,020 reading manifest template 'MANIFEST.in' 2024-04-05T00:28:10,031 adding license file 'LICENSE' 2024-04-05T00:28:10,034 writing manifest file 'biomero.egg-info/SOURCES.txt' 2024-04-05T00:28:10,152 Getting requirements to build wheel: finished with status 'done' 2024-04-05T00:28:10,164 Installing backend dependencies: started 2024-04-05T00:28:10,166 Running command pip subprocess to install backend dependencies 2024-04-05T00:28:11,403 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-05T00:28:12,198 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-05T00:28:12,822 Collecting wheel 2024-04-05T00:28:12,857 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-05T00:28:15,337 Installing collected packages: wheel 2024-04-05T00:28:15,579 Creating /tmp/pip-build-env-p5qhjbat/normal/local/bin 2024-04-05T00:28:15,583 changing mode of /tmp/pip-build-env-p5qhjbat/normal/local/bin/wheel to 755 2024-04-05T00:28:15,810 Successfully installed wheel-0.43.0 2024-04-05T00:28:16,376 Installing backend dependencies: finished with status 'done' 2024-04-05T00:28:16,378 Created temporary directory: /tmp/pip-modern-metadata-oopbxm6e 2024-04-05T00:28:16,381 Preparing metadata (pyproject.toml): started 2024-04-05T00:28:16,382 Running command Preparing metadata (pyproject.toml) 2024-04-05T00:28:18,113 running dist_info 2024-04-05T00:28:18,120 creating /tmp/pip-modern-metadata-oopbxm6e/biomero.egg-info 2024-04-05T00:28:18,125 writing /tmp/pip-modern-metadata-oopbxm6e/biomero.egg-info/PKG-INFO 2024-04-05T00:28:18,134 writing dependency_links to /tmp/pip-modern-metadata-oopbxm6e/biomero.egg-info/dependency_links.txt 2024-04-05T00:28:18,137 writing requirements to /tmp/pip-modern-metadata-oopbxm6e/biomero.egg-info/requires.txt 2024-04-05T00:28:18,138 writing top-level names to /tmp/pip-modern-metadata-oopbxm6e/biomero.egg-info/top_level.txt 2024-04-05T00:28:18,140 writing manifest file '/tmp/pip-modern-metadata-oopbxm6e/biomero.egg-info/SOURCES.txt' 2024-04-05T00:28:18,183 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-05T00:28:18,187 reading manifest file '/tmp/pip-modern-metadata-oopbxm6e/biomero.egg-info/SOURCES.txt' 2024-04-05T00:28:18,189 reading manifest template 'MANIFEST.in' 2024-04-05T00:28:18,198 adding license file 'LICENSE' 2024-04-05T00:28:18,200 writing manifest file '/tmp/pip-modern-metadata-oopbxm6e/biomero.egg-info/SOURCES.txt' 2024-04-05T00:28:18,202 creating '/tmp/pip-modern-metadata-oopbxm6e/biomero-1.8.0.dist-info' 2024-04-05T00:28:18,372 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-05T00:28:18,381 Source in /tmp/pip-wheel-vd31guce/biomero_99bbf081bbb849da9058783efa515571 has version 1.8.0, which satisfies requirement biomero==1.8.0 from https://files.pythonhosted.org/packages/c4/f3/5e41f475114acc86b9c5fc20fe702136efe2cfd9a93d877db1b6dd619297/biomero-1.8.0.tar.gz 2024-04-05T00:28:18,382 Removed biomero==1.8.0 from https://files.pythonhosted.org/packages/c4/f3/5e41f475114acc86b9c5fc20fe702136efe2cfd9a93d877db1b6dd619297/biomero-1.8.0.tar.gz from build tracker '/tmp/pip-build-tracker-gx1_wd12' 2024-04-05T00:28:18,395 Created temporary directory: /tmp/pip-unpack-qan_ep6z 2024-04-05T00:28:18,396 Created temporary directory: /tmp/pip-unpack-gzgbx5tm 2024-04-05T00:28:18,417 Building wheels for collected packages: biomero 2024-04-05T00:28:18,421 Created temporary directory: /tmp/pip-wheel-ujv7q4q6 2024-04-05T00:28:18,422 Destination directory: /tmp/pip-wheel-ujv7q4q6 2024-04-05T00:28:18,424 Building wheel for biomero (pyproject.toml): started 2024-04-05T00:28:18,425 Running command Building wheel for biomero (pyproject.toml) 2024-04-05T00:28:19,256 running bdist_wheel 2024-04-05T00:28:19,278 running build 2024-04-05T00:28:19,279 running build_py 2024-04-05T00:28:19,287 creating build 2024-04-05T00:28:19,288 creating build/lib 2024-04-05T00:28:19,290 creating build/lib/biomero 2024-04-05T00:28:19,511 copying biomero/slurm_client.py -> build/lib/biomero 2024-04-05T00:28:19,516 copying biomero/__init__.py -> build/lib/biomero 2024-04-05T00:28:19,518 copying biomero/constants.py -> build/lib/biomero 2024-04-05T00:28:19,521 creating build/lib/docs 2024-04-05T00:28:19,521 copying docs/conf.py -> build/lib/docs 2024-04-05T00:28:19,524 creating build/lib/resources 2024-04-05T00:28:19,525 copying resources/__init__.py -> build/lib/resources 2024-04-05T00:28:19,527 copying resources/convert_zarr_to_tiff.py -> build/lib/resources 2024-04-05T00:28:19,530 creating build/lib/tests 2024-04-05T00:28:19,530 creating build/lib/tests/integration 2024-04-05T00:28:19,532 copying tests/integration/__init__.py -> build/lib/tests/integration 2024-04-05T00:28:19,534 creating build/lib/tests/unit 2024-04-05T00:28:19,535 copying tests/unit/__init__.py -> build/lib/tests/unit 2024-04-05T00:28:19,536 copying tests/unit/test_slurm_client.py -> build/lib/tests/unit 2024-04-05T00:28:19,541 running egg_info 2024-04-05T00:28:19,546 writing biomero.egg-info/PKG-INFO 2024-04-05T00:28:19,551 writing dependency_links to biomero.egg-info/dependency_links.txt 2024-04-05T00:28:19,553 writing requirements to biomero.egg-info/requires.txt 2024-04-05T00:28:19,555 writing top-level names to biomero.egg-info/top_level.txt 2024-04-05T00:28:19,586 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-05T00:28:19,589 reading manifest file 'biomero.egg-info/SOURCES.txt' 2024-04-05T00:28:19,593 reading manifest template 'MANIFEST.in' 2024-04-05T00:28:19,602 adding license file 'LICENSE' 2024-04-05T00:28:19,605 writing manifest file 'biomero.egg-info/SOURCES.txt' 2024-04-05T00:28:19,611 copying docs/Makefile -> build/lib/docs 2024-04-05T00:28:19,614 copying docs/index.rst -> build/lib/docs 2024-04-05T00:28:19,616 copying docs/make.bat -> build/lib/docs 2024-04-05T00:28:19,619 copying docs/modules.rst -> build/lib/docs 2024-04-05T00:28:19,621 copying docs/omero_slurm_client.rst -> build/lib/docs 2024-04-05T00:28:19,623 copying docs/readme_link.md -> build/lib/docs 2024-04-05T00:28:19,626 copying docs/requirements.txt -> build/lib/docs 2024-04-05T00:28:19,628 copying docs/tutorial_link.md -> build/lib/docs 2024-04-05T00:28:19,630 copying resources/convert_job_array.sh -> build/lib/resources 2024-04-05T00:28:19,633 copying resources/convert_zarr_to_tiff.def -> build/lib/resources 2024-04-05T00:28:19,635 copying resources/example.config -> build/lib/resources 2024-04-05T00:28:19,637 copying resources/job_template.sh -> build/lib/resources 2024-04-05T00:28:19,640 copying resources/pull_images.sh -> build/lib/resources 2024-04-05T00:28:19,642 copying resources/slurm-config.ini -> build/lib/resources 2024-04-05T00:28:19,645 creating build/lib/resources/tutorials 2024-04-05T00:28:19,646 copying resources/tutorials/tutorial_Azure_slurm.md -> build/lib/resources/tutorials 2024-04-05T00:28:19,649 copying resources/tutorials/tutorial_GoogleCloud_slurm.md -> build/lib/resources/tutorials 2024-04-05T00:28:19,652 copying resources/tutorials/tutorial_cellexpansion.md -> build/lib/resources/tutorials 2024-04-05T00:28:19,655 copying resources/tutorials/tutorial_cellprofiler.md -> build/lib/resources/tutorials 2024-04-05T00:28:19,658 copying resources/tutorials/tutorial_local_slurm.md -> build/lib/resources/tutorials 2024-04-05T00:28:19,661 creating build/lib/resources/tutorials/images 2024-04-05T00:28:19,662 copying resources/tutorials/images/Cells.tif -> build/lib/resources/tutorials/images 2024-04-05T00:28:19,705 copying resources/tutorials/images/cellexpansion.png -> build/lib/resources/tutorials/images 2024-04-05T00:28:19,753 copying resources/tutorials/images/gc_allow_ssh.PNG -> build/lib/resources/tutorials/images 2024-04-05T00:28:19,760 copying resources/tutorials/images/nuclei_labels.png -> build/lib/resources/tutorials/images 2024-04-05T00:28:19,770 copying resources/tutorials/images/webclient_init_env.PNG -> build/lib/resources/tutorials/images 2024-04-05T00:28:19,774 copying resources/tutorials/images/webclient_init_env_done.PNG -> build/lib/resources/tutorials/images 2024-04-05T00:28:19,777 copying resources/tutorials/images/webclient_run_cellpose.PNG -> build/lib/resources/tutorials/images 2024-04-05T00:28:19,781 copying resources/tutorials/images/webclient_run_workflow.PNG -> build/lib/resources/tutorials/images 2024-04-05T00:28:19,796 installing to build/bdist.linux-armv7l/wheel 2024-04-05T00:28:19,797 running install 2024-04-05T00:28:19,821 running install_lib 2024-04-05T00:28:19,826 creating build/bdist.linux-armv7l 2024-04-05T00:28:19,827 creating build/bdist.linux-armv7l/wheel 2024-04-05T00:28:19,829 creating build/bdist.linux-armv7l/wheel/biomero 2024-04-05T00:28:19,830 copying build/lib/biomero/slurm_client.py -> build/bdist.linux-armv7l/wheel/biomero 2024-04-05T00:28:19,834 copying build/lib/biomero/__init__.py -> build/bdist.linux-armv7l/wheel/biomero 2024-04-05T00:28:19,836 copying build/lib/biomero/constants.py -> build/bdist.linux-armv7l/wheel/biomero 2024-04-05T00:28:19,838 creating build/bdist.linux-armv7l/wheel/docs 2024-04-05T00:28:19,839 copying build/lib/docs/tutorial_link.md -> build/bdist.linux-armv7l/wheel/docs 2024-04-05T00:28:19,841 copying build/lib/docs/requirements.txt -> build/bdist.linux-armv7l/wheel/docs 2024-04-05T00:28:19,842 copying build/lib/docs/make.bat -> build/bdist.linux-armv7l/wheel/docs 2024-04-05T00:28:19,844 copying build/lib/docs/Makefile -> build/bdist.linux-armv7l/wheel/docs 2024-04-05T00:28:19,846 copying build/lib/docs/conf.py -> build/bdist.linux-armv7l/wheel/docs 2024-04-05T00:28:19,847 copying build/lib/docs/modules.rst -> build/bdist.linux-armv7l/wheel/docs 2024-04-05T00:28:19,849 copying build/lib/docs/omero_slurm_client.rst -> build/bdist.linux-armv7l/wheel/docs 2024-04-05T00:28:19,851 copying build/lib/docs/readme_link.md -> build/bdist.linux-armv7l/wheel/docs 2024-04-05T00:28:19,852 copying build/lib/docs/index.rst -> build/bdist.linux-armv7l/wheel/docs 2024-04-05T00:28:19,855 creating build/bdist.linux-armv7l/wheel/tests 2024-04-05T00:28:19,856 creating build/bdist.linux-armv7l/wheel/tests/integration 2024-04-05T00:28:19,857 copying build/lib/tests/integration/__init__.py -> build/bdist.linux-armv7l/wheel/tests/integration 2024-04-05T00:28:19,860 creating build/bdist.linux-armv7l/wheel/tests/unit 2024-04-05T00:28:19,861 copying build/lib/tests/unit/__init__.py -> build/bdist.linux-armv7l/wheel/tests/unit 2024-04-05T00:28:19,862 copying build/lib/tests/unit/test_slurm_client.py -> build/bdist.linux-armv7l/wheel/tests/unit 2024-04-05T00:28:19,866 creating build/bdist.linux-armv7l/wheel/resources 2024-04-05T00:28:19,867 copying build/lib/resources/job_template.sh -> build/bdist.linux-armv7l/wheel/resources 2024-04-05T00:28:19,869 copying build/lib/resources/__init__.py -> build/bdist.linux-armv7l/wheel/resources 2024-04-05T00:28:19,871 copying build/lib/resources/slurm-config.ini -> build/bdist.linux-armv7l/wheel/resources 2024-04-05T00:28:19,873 copying build/lib/resources/pull_images.sh -> build/bdist.linux-armv7l/wheel/resources 2024-04-05T00:28:19,875 copying build/lib/resources/convert_zarr_to_tiff.py -> build/bdist.linux-armv7l/wheel/resources 2024-04-05T00:28:19,877 copying build/lib/resources/convert_zarr_to_tiff.def -> build/bdist.linux-armv7l/wheel/resources 2024-04-05T00:28:19,879 copying build/lib/resources/convert_job_array.sh -> build/bdist.linux-armv7l/wheel/resources 2024-04-05T00:28:19,881 creating build/bdist.linux-armv7l/wheel/resources/tutorials 2024-04-05T00:28:19,882 copying build/lib/resources/tutorials/tutorial_GoogleCloud_slurm.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-04-05T00:28:19,885 copying build/lib/resources/tutorials/tutorial_cellexpansion.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-04-05T00:28:19,888 creating build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-04-05T00:28:19,888 copying build/lib/resources/tutorials/images/nuclei_labels.png -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-04-05T00:28:19,896 copying build/lib/resources/tutorials/images/webclient_init_env_done.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-04-05T00:28:19,899 copying build/lib/resources/tutorials/images/Cells.tif -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-04-05T00:28:19,911 copying build/lib/resources/tutorials/images/cellexpansion.png -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-04-05T00:28:19,959 copying build/lib/resources/tutorials/images/webclient_run_workflow.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-04-05T00:28:19,966 copying build/lib/resources/tutorials/images/webclient_init_env.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-04-05T00:28:19,970 copying build/lib/resources/tutorials/images/webclient_run_cellpose.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-04-05T00:28:19,975 copying build/lib/resources/tutorials/images/gc_allow_ssh.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-04-05T00:28:19,983 copying build/lib/resources/tutorials/tutorial_cellprofiler.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-04-05T00:28:19,987 copying build/lib/resources/tutorials/tutorial_Azure_slurm.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-04-05T00:28:19,992 copying build/lib/resources/tutorials/tutorial_local_slurm.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-04-05T00:28:19,996 copying build/lib/resources/example.config -> build/bdist.linux-armv7l/wheel/resources 2024-04-05T00:28:19,999 running install_egg_info 2024-04-05T00:28:20,007 Copying biomero.egg-info to build/bdist.linux-armv7l/wheel/biomero-1.8.0-py3.11.egg-info 2024-04-05T00:28:20,065 running install_scripts 2024-04-05T00:28:20,094 creating build/bdist.linux-armv7l/wheel/biomero-1.8.0.dist-info/WHEEL 2024-04-05T00:28:20,098 creating '/tmp/pip-wheel-ujv7q4q6/.tmp-2x5ezqr7/biomero-1.8.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-05T00:28:20,101 adding 'biomero/__init__.py' 2024-04-05T00:28:20,104 adding 'biomero/constants.py' 2024-04-05T00:28:20,117 adding 'biomero/slurm_client.py' 2024-04-05T00:28:20,122 adding 'docs/Makefile' 2024-04-05T00:28:20,124 adding 'docs/conf.py' 2024-04-05T00:28:20,126 adding 'docs/index.rst' 2024-04-05T00:28:20,128 adding 'docs/make.bat' 2024-04-05T00:28:20,131 adding 'docs/modules.rst' 2024-04-05T00:28:20,132 adding 'docs/omero_slurm_client.rst' 2024-04-05T00:28:20,134 adding 'docs/readme_link.md' 2024-04-05T00:28:20,136 adding 'docs/requirements.txt' 2024-04-05T00:28:20,138 adding 'docs/tutorial_link.md' 2024-04-05T00:28:20,141 adding 'resources/__init__.py' 2024-04-05T00:28:20,143 adding 'resources/convert_job_array.sh' 2024-04-05T00:28:20,144 adding 'resources/convert_zarr_to_tiff.def' 2024-04-05T00:28:20,147 adding 'resources/convert_zarr_to_tiff.py' 2024-04-05T00:28:20,148 adding 'resources/example.config' 2024-04-05T00:28:20,151 adding 'resources/job_template.sh' 2024-04-05T00:28:20,153 adding 'resources/pull_images.sh' 2024-04-05T00:28:20,155 adding 'resources/slurm-config.ini' 2024-04-05T00:28:20,161 adding 'resources/tutorials/tutorial_Azure_slurm.md' 2024-04-05T00:28:20,164 adding 'resources/tutorials/tutorial_GoogleCloud_slurm.md' 2024-04-05T00:28:20,166 adding 'resources/tutorials/tutorial_cellexpansion.md' 2024-04-05T00:28:20,169 adding 'resources/tutorials/tutorial_cellprofiler.md' 2024-04-05T00:28:20,173 adding 'resources/tutorials/tutorial_local_slurm.md' 2024-04-05T00:28:20,214 adding 'resources/tutorials/images/Cells.tif' 2024-04-05T00:28:20,252 adding 'resources/tutorials/images/cellexpansion.png' 2024-04-05T00:28:20,264 adding 'resources/tutorials/images/gc_allow_ssh.PNG' 2024-04-05T00:28:20,287 adding 'resources/tutorials/images/nuclei_labels.png' 2024-04-05T00:28:20,291 adding 'resources/tutorials/images/webclient_init_env.PNG' 2024-04-05T00:28:20,294 adding 'resources/tutorials/images/webclient_init_env_done.PNG' 2024-04-05T00:28:20,298 adding 'resources/tutorials/images/webclient_run_cellpose.PNG' 2024-04-05T00:28:20,305 adding 'resources/tutorials/images/webclient_run_workflow.PNG' 2024-04-05T00:28:20,308 adding 'tests/integration/__init__.py' 2024-04-05T00:28:20,310 adding 'tests/unit/__init__.py' 2024-04-05T00:28:20,314 adding 'tests/unit/test_slurm_client.py' 2024-04-05T00:28:20,316 adding 'biomero-1.8.0.dist-info/LICENSE' 2024-04-05T00:28:20,324 adding 'biomero-1.8.0.dist-info/METADATA' 2024-04-05T00:28:20,326 adding 'biomero-1.8.0.dist-info/WHEEL' 2024-04-05T00:28:20,328 adding 'biomero-1.8.0.dist-info/top_level.txt' 2024-04-05T00:28:20,330 adding 'biomero-1.8.0.dist-info/RECORD' 2024-04-05T00:28:20,397 removing build/bdist.linux-armv7l/wheel 2024-04-05T00:28:20,546 Building wheel for biomero (pyproject.toml): finished with status 'done' 2024-04-05T00:28:20,575 Created wheel for biomero: filename=biomero-1.8.0-py3-none-any.whl size=1091063 sha256=823968c9fd9c97aa196bb2d2b94d85245d2163842ba800ea938a1fdeb7be8b74 2024-04-05T00:28:20,576 Stored in directory: /tmp/pip-ephem-wheel-cache-chfmnlbd/wheels/19/29/9f/8f61deadc37649c59776400088b27496e35dd3117ac180d022 2024-04-05T00:28:20,600 Successfully built biomero 2024-04-05T00:28:20,672 Removed build tracker: '/tmp/pip-build-tracker-gx1_wd12'