2024-04-08T06:35:27,572 Created temporary directory: /tmp/pip-build-tracker-f6p6_f0m 2024-04-08T06:35:27,573 Initialized build tracking at /tmp/pip-build-tracker-f6p6_f0m 2024-04-08T06:35:27,573 Created build tracker: /tmp/pip-build-tracker-f6p6_f0m 2024-04-08T06:35:27,574 Entered build tracker: /tmp/pip-build-tracker-f6p6_f0m 2024-04-08T06:35:27,575 Created temporary directory: /tmp/pip-wheel-daef_m9r 2024-04-08T06:35:27,578 Created temporary directory: /tmp/pip-ephem-wheel-cache-hdj0uhnf 2024-04-08T06:35:27,600 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-08T06:35:27,603 2 location(s) to search for versions of nanomonsv: 2024-04-08T06:35:27,603 * https://pypi.org/simple/nanomonsv/ 2024-04-08T06:35:27,603 * https://www.piwheels.org/simple/nanomonsv/ 2024-04-08T06:35:27,604 Fetching project page and analyzing links: https://pypi.org/simple/nanomonsv/ 2024-04-08T06:35:27,605 Getting page https://pypi.org/simple/nanomonsv/ 2024-04-08T06:35:27,606 Found index url https://pypi.org/simple/ 2024-04-08T06:35:27,816 Fetched page https://pypi.org/simple/nanomonsv/ as application/vnd.pypi.simple.v1+json 2024-04-08T06:35:27,822 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/86/c2/7875348ad082d536efc388fb6fac2e6cc8860da5a4df7226646e31360f18/nanomonsv-0.2.0b1-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,823 Found link https://files.pythonhosted.org/packages/60/2f/6a86517466677525216473caa779a32411d0cfdf993a98db1f78d06994e5/nanomonsv-0.2.0b1.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.2.0b1 2024-04-08T06:35:27,823 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/ac/1d/e136a4f2c99217dc97c964ed57f0e5293a4357dc63861491db2ddad25e2a/nanomonsv-0.2.0b2-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,824 Found link https://files.pythonhosted.org/packages/18/6c/eefa4e71663b56b41fcc686be2661022da9570820d4b158e3c00666e608b/nanomonsv-0.2.0b2.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.2.0b2 2024-04-08T06:35:27,825 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/43/d0/2f35010f5238ee752950d2045d4272eb0586c4a9bd1d4edd0976cd743b1d/nanomonsv-0.2.0b3-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,825 Found link https://files.pythonhosted.org/packages/3a/b2/24335e5cac284d0b23fe89d01c134f88c2728ea22aa318e6c3e14fd5923a/nanomonsv-0.2.0b3.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.2.0b3 2024-04-08T06:35:27,826 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/98/c8/56e1b52cb06b80fee5343f236287736108317813f030eba3dcf93e221ff9/nanomonsv-0.2.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,827 Found link https://files.pythonhosted.org/packages/6a/0a/8ca5cd1f3cffbee8f9351d29868b279589b045615586c8ba34978261ee89/nanomonsv-0.2.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.2.0 2024-04-08T06:35:27,828 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/c6/20/5e322748ed7a6385b77d806086968503631349583a804f894bc163618bc7/nanomonsv-0.3.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,828 Found link https://files.pythonhosted.org/packages/e6/c3/8a109548e162a81c53ad13a14ace41560d56b09af751065db7c6f3d5ae91/nanomonsv-0.3.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.3.0 2024-04-08T06:35:27,829 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/fc/5c/9b0a333fa811a928e889de64211ee16e94444be4c5a65486e892e28745a6/nanomonsv-0.4.0b1-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,829 Found link https://files.pythonhosted.org/packages/b0/cc/11a5284b555de40a6b8434cb0e376d512ce99908a2cde3b1291691f34700/nanomonsv-0.4.0b1.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.4.0b1 2024-04-08T06:35:27,830 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/94/01/b058a48c94ef25fa011a5c0a08b09d210b83b4927820395f546d29d35bf6/nanomonsv-0.4.0b2-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,831 Found link https://files.pythonhosted.org/packages/33/31/bfa9a016b29480dc07accf15d2bfb1ccc846c442680e872f97094de58305/nanomonsv-0.4.0b2.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.4.0b2 2024-04-08T06:35:27,832 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/e7/66/c8bbf6feaf08a3ede4a0e56aafccb07a145741a9df4f5f3bbfbca9717a45/nanomonsv-0.4.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,832 Found link https://files.pythonhosted.org/packages/f4/da/179916ab642904fddc77eee57387c0b5df3c99b6061f2ac7f797ffd212d3/nanomonsv-0.4.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.4.0 2024-04-08T06:35:27,833 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/98/57/63fdd2b1aabeef1963bd3d7c9275d2f07c483ce0ca39a570c86eec02975c/nanomonsv-0.5.0b2-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,833 Found link https://files.pythonhosted.org/packages/09/67/cc66666ed48a2034c5b56f9cf7e0a66deac7ad90dfec88deb42d07eb7f85/nanomonsv-0.5.0b2.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.5.0b2 2024-04-08T06:35:27,834 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/07/87/b26f1ff2e850ca19ea236e6f61bdcd2476b34f3cef50d710945ffa454d66/nanomonsv-0.5.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,834 Found link https://files.pythonhosted.org/packages/25/cc/e7730b3c34d262d00eabdefd2c5fb4f7fe189eb308fd8986a69c1975d919/nanomonsv-0.5.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.5.0 2024-04-08T06:35:27,835 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/04/52/9613a8824bad6ecd8781f166b955ca208201c78de9714887976d9ef9000c/nanomonsv-0.5.1-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,836 Found link https://files.pythonhosted.org/packages/a4/04/1136089512a8050178b741ea64c910f19fed3ed06035d7058434b4503bf1/nanomonsv-0.5.1.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.5.1 2024-04-08T06:35:27,836 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/a5/f5/d1b42c1b096249dad8a9eaa02957c56327a77f8dda332c4087759f270851/nanomonsv-0.6.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,837 Found link https://files.pythonhosted.org/packages/96/8c/6525a958c684b50ffcfbe6a23a256a84af3bc2f0149c44350905adb96940/nanomonsv-0.6.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.6.0 2024-04-08T06:35:27,838 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/47/33/abc719184603650a0b3d8b7dcec0e99297e7541e3a33e807728d2c7ed20b/nanomonsv-0.7.0-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,838 Found link https://files.pythonhosted.org/packages/da/ac/138e4e0d794c91e35f8c446052200544bce864f4a237a8f9b9cc2e67c937/nanomonsv-0.7.0.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.7.0 2024-04-08T06:35:27,839 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/33/04/1232c2d4575abd715ca7fbb58435c11cf66f655f52c6307f95dc63b7a88a/nanomonsv-0.7.1-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,840 Found link https://files.pythonhosted.org/packages/b1/46/d041d265d6ac53bb6979b475b30df43f02e47a1481d0f36816d033918927/nanomonsv-0.7.1.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.7.1 2024-04-08T06:35:27,840 Skipping link: No binaries permitted for nanomonsv: https://files.pythonhosted.org/packages/f9/51/0d5720417e89a59689e984001d22fe022b0dd3eca7bfd0146e3209ff9ada/nanomonsv-0.7.2-py3-none-any.whl (from https://pypi.org/simple/nanomonsv/) 2024-04-08T06:35:27,841 Found link https://files.pythonhosted.org/packages/53/1d/587229f0d1be16536babcf4cfa42e264adc4ef18c4c2453593f4697b8e1f/nanomonsv-0.7.2.tar.gz (from https://pypi.org/simple/nanomonsv/), version: 0.7.2 2024-04-08T06:35:27,842 Fetching project page and analyzing links: https://www.piwheels.org/simple/nanomonsv/ 2024-04-08T06:35:27,843 Getting page https://www.piwheels.org/simple/nanomonsv/ 2024-04-08T06:35:27,844 Found index url https://www.piwheels.org/simple/ 2024-04-08T06:35:28,088 Fetched page https://www.piwheels.org/simple/nanomonsv/ as text/html 2024-04-08T06:35:28,094 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.7.1-py3-none-any.whl#sha256=433b7b397e0c575bf1f76066b518676b010e83ec09450347c748b6be7d4945cb (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,095 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.7.0-py3-none-any.whl#sha256=cd58ad4c8bebda8cb12423c35d13c8778f838403b6c18dbd101d9d6da40cdf4d (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,095 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.6.0-py3-none-any.whl#sha256=cb2aeaae31c3e0fedc3ede06bd8a25ea5db95b00da9ae24c4ee6197e619949a9 (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,096 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.5.1-py3-none-any.whl#sha256=2b59c98330574680dcf18680d624015035dcb796c50eea658615f645782c2584 (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,097 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.5.0-py3-none-any.whl#sha256=dfc6bd7c2b7944d8f12a46e535e89bd37c927a5203dd44cd8f82d70aca9b82b2 (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,097 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.5.0b2-py3-none-any.whl#sha256=8e5a4495ff5e3a8d7c9bd6e17a2caf86d12c52817b420176aae07ecb79fba651 (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,098 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.4.0-py3-none-any.whl#sha256=9242ee898c9166b7b7b52e49af892bb4b614ce8be78f838952217b90b0733363 (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,099 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.4.0b2-py3-none-any.whl#sha256=eabeb3034df7d19e5f305260f9aa5fc3b32de56ea54659ee96230124eaf34dfa (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,099 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.4.0b1-py3-none-any.whl#sha256=a27a8be2cecb85df70b2f132954242da370eea197b1f2a4efcaecbdbe775d906 (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,100 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.3.0-py3-none-any.whl#sha256=60c30b67d806fac731eb67ed5cfb2db3abd1ea735d6fcc2f2bcb82ecd70438bd (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,101 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.2.0-py3-none-any.whl#sha256=663ae38643f269f3a86a23453093f1e2def4a6be649c5a7459a5462e70906c2f (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,101 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.2.0b3-py3-none-any.whl#sha256=af9d6df96ad8b0c093ffa061ec387ddbc63acc9a96d6011b3fe533d0f4b93825 (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,102 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.2.0b2-py3-none-any.whl#sha256=ed523c14020f9d0a81a3dae05e1c549b41ab7caf99fa3d40f414e48d60e34745 (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,103 Skipping link: No binaries permitted for nanomonsv: https://www.piwheels.org/simple/nanomonsv/nanomonsv-0.2.0b1-py3-none-any.whl#sha256=e1b3f57d8ac46982010d6fc5c74b8e1e735513a5cde24f8f658650bd1874f242 (from https://www.piwheels.org/simple/nanomonsv/) 2024-04-08T06:35:28,104 Skipping link: not a file: https://www.piwheels.org/simple/nanomonsv/ 2024-04-08T06:35:28,105 Skipping link: not a file: https://pypi.org/simple/nanomonsv/ 2024-04-08T06:35:28,133 Given no hashes to check 1 links for project 'nanomonsv': discarding no candidates 2024-04-08T06:35:28,159 Collecting nanomonsv==0.7.2 2024-04-08T06:35:28,162 Created temporary directory: /tmp/pip-unpack-ewtkaeua 2024-04-08T06:35:28,370 Downloading nanomonsv-0.7.2.tar.gz (217 kB) 2024-04-08T06:35:28,536 Added nanomonsv==0.7.2 from https://files.pythonhosted.org/packages/53/1d/587229f0d1be16536babcf4cfa42e264adc4ef18c4c2453593f4697b8e1f/nanomonsv-0.7.2.tar.gz to build tracker '/tmp/pip-build-tracker-f6p6_f0m' 2024-04-08T06:35:28,537 Running setup.py (path:/tmp/pip-wheel-daef_m9r/nanomonsv_4914a9a5ad874d1b97d528db6712c6e7/setup.py) egg_info for package nanomonsv 2024-04-08T06:35:28,538 Created temporary directory: /tmp/pip-pip-egg-info-xpe6gpfu 2024-04-08T06:35:28,539 Preparing metadata (setup.py): started 2024-04-08T06:35:28,540 Running command python setup.py egg_info 2024-04-08T06:35:29,617 running egg_info 2024-04-08T06:35:29,618 creating /tmp/pip-pip-egg-info-xpe6gpfu/nanomonsv.egg-info 2024-04-08T06:35:29,643 writing /tmp/pip-pip-egg-info-xpe6gpfu/nanomonsv.egg-info/PKG-INFO 2024-04-08T06:35:29,647 writing dependency_links to /tmp/pip-pip-egg-info-xpe6gpfu/nanomonsv.egg-info/dependency_links.txt 2024-04-08T06:35:29,648 writing entry points to /tmp/pip-pip-egg-info-xpe6gpfu/nanomonsv.egg-info/entry_points.txt 2024-04-08T06:35:29,650 writing top-level names to /tmp/pip-pip-egg-info-xpe6gpfu/nanomonsv.egg-info/top_level.txt 2024-04-08T06:35:29,651 writing manifest file '/tmp/pip-pip-egg-info-xpe6gpfu/nanomonsv.egg-info/SOURCES.txt' 2024-04-08T06:35:29,733 reading manifest file '/tmp/pip-pip-egg-info-xpe6gpfu/nanomonsv.egg-info/SOURCES.txt' 2024-04-08T06:35:29,734 adding license file 'LICENSE' 2024-04-08T06:35:29,737 writing manifest file '/tmp/pip-pip-egg-info-xpe6gpfu/nanomonsv.egg-info/SOURCES.txt' 2024-04-08T06:35:29,844 Preparing metadata (setup.py): finished with status 'done' 2024-04-08T06:35:29,848 Source in /tmp/pip-wheel-daef_m9r/nanomonsv_4914a9a5ad874d1b97d528db6712c6e7 has version 0.7.2, which satisfies requirement nanomonsv==0.7.2 from https://files.pythonhosted.org/packages/53/1d/587229f0d1be16536babcf4cfa42e264adc4ef18c4c2453593f4697b8e1f/nanomonsv-0.7.2.tar.gz 2024-04-08T06:35:29,849 Removed nanomonsv==0.7.2 from https://files.pythonhosted.org/packages/53/1d/587229f0d1be16536babcf4cfa42e264adc4ef18c4c2453593f4697b8e1f/nanomonsv-0.7.2.tar.gz from build tracker '/tmp/pip-build-tracker-f6p6_f0m' 2024-04-08T06:35:29,854 Created temporary directory: /tmp/pip-unpack-c5dfhmmd 2024-04-08T06:35:29,855 Created temporary directory: /tmp/pip-unpack-4vstzfro 2024-04-08T06:35:29,859 Building wheels for collected packages: nanomonsv 2024-04-08T06:35:29,863 Created temporary directory: /tmp/pip-wheel-t_hst0r5 2024-04-08T06:35:29,864 Building wheel for nanomonsv (setup.py): started 2024-04-08T06:35:29,865 Destination directory: /tmp/pip-wheel-t_hst0r5 2024-04-08T06:35:29,866 Running command python setup.py bdist_wheel 2024-04-08T06:35:30,877 running bdist_wheel 2024-04-08T06:35:30,976 running build 2024-04-08T06:35:30,977 running build_py 2024-04-08T06:35:31,006 creating build 2024-04-08T06:35:31,006 creating build/lib 2024-04-08T06:35:31,007 creating build/lib/nanomonsv 2024-04-08T06:35:31,008 copying nanomonsv/smith_waterman.py -> build/lib/nanomonsv 2024-04-08T06:35:31,011 copying nanomonsv/version.py -> build/lib/nanomonsv 2024-04-08T06:35:31,013 copying nanomonsv/count_sread_by_alignment.py -> build/lib/nanomonsv 2024-04-08T06:35:31,015 copying nanomonsv/my_seq.py -> build/lib/nanomonsv 2024-04-08T06:35:31,018 copying nanomonsv/filt.py -> build/lib/nanomonsv 2024-04-08T06:35:31,020 copying nanomonsv/cluster.py -> build/lib/nanomonsv 2024-04-08T06:35:31,022 copying nanomonsv/swalign.py -> build/lib/nanomonsv 2024-04-08T06:35:31,025 copying nanomonsv/pyssw.py -> build/lib/nanomonsv 2024-04-08T06:35:31,027 copying nanomonsv/logger.py -> build/lib/nanomonsv 2024-04-08T06:35:31,029 copying nanomonsv/locate_bp_sbnd.py -> build/lib/nanomonsv 2024-04-08T06:35:31,031 copying nanomonsv/ssw_lib.py -> build/lib/nanomonsv 2024-04-08T06:35:31,033 copying nanomonsv/run.py -> build/lib/nanomonsv 2024-04-08T06:35:31,035 copying nanomonsv/long_read_validate.py -> build/lib/nanomonsv 2024-04-08T06:35:31,038 copying nanomonsv/generate_consensus.py -> build/lib/nanomonsv 2024-04-08T06:35:31,040 copying nanomonsv/gather_support_read_seq.py -> build/lib/nanomonsv 2024-04-08T06:35:31,042 copying nanomonsv/utils.py -> build/lib/nanomonsv 2024-04-08T06:35:31,044 copying nanomonsv/arg_parser.py -> build/lib/nanomonsv 2024-04-08T06:35:31,046 copying nanomonsv/locate_bp.py -> build/lib/nanomonsv 2024-04-08T06:35:31,048 copying nanomonsv/vcf_convert.py -> build/lib/nanomonsv 2024-04-08T06:35:31,050 copying nanomonsv/cluster_sbnd.py -> build/lib/nanomonsv 2024-04-08T06:35:31,052 copying nanomonsv/merge_control.py -> build/lib/nanomonsv 2024-04-08T06:35:31,054 copying nanomonsv/post_proc.py -> build/lib/nanomonsv 2024-04-08T06:35:31,056 copying nanomonsv/insert_classify.py -> build/lib/nanomonsv 2024-04-08T06:35:31,059 copying nanomonsv/__init__.py -> build/lib/nanomonsv 2024-04-08T06:35:31,061 copying nanomonsv/parse.py -> build/lib/nanomonsv 2024-04-08T06:35:31,065 creating build/lib/nanomonsv/data 2024-04-08T06:35:31,066 copying nanomonsv/data/LINE1.hg19.bed.gz -> build/lib/nanomonsv/data 2024-04-08T06:35:31,068 copying nanomonsv/data/LINE1.hg38.bed.gz.tbi -> build/lib/nanomonsv/data 2024-04-08T06:35:31,071 copying nanomonsv/data/LINE1.hg19.bed.gz.tbi -> build/lib/nanomonsv/data 2024-04-08T06:35:31,073 copying nanomonsv/data/LINE1.hg38.bed.gz -> build/lib/nanomonsv/data 2024-04-08T06:35:31,103 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-04-08T06:35:31,104 !! 2024-04-08T06:35:31,105 ******************************************************************************** 2024-04-08T06:35:31,106 Please avoid running ``setup.py`` directly. 2024-04-08T06:35:31,106 Instead, use pypa/build, pypa/installer or other 2024-04-08T06:35:31,107 standards-based tools. 2024-04-08T06:35:31,108 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-04-08T06:35:31,109 ******************************************************************************** 2024-04-08T06:35:31,110 !! 2024-04-08T06:35:31,111 self.initialize_options() 2024-04-08T06:35:31,130 installing to build/bdist.linux-armv7l/wheel 2024-04-08T06:35:31,130 running install 2024-04-08T06:35:31,154 running install_lib 2024-04-08T06:35:31,179 creating build/bdist.linux-armv7l 2024-04-08T06:35:31,179 creating build/bdist.linux-armv7l/wheel 2024-04-08T06:35:31,181 creating build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,182 copying build/lib/nanomonsv/smith_waterman.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,185 creating build/bdist.linux-armv7l/wheel/nanomonsv/data 2024-04-08T06:35:31,186 copying build/lib/nanomonsv/data/LINE1.hg19.bed.gz -> build/bdist.linux-armv7l/wheel/nanomonsv/data 2024-04-08T06:35:31,188 copying build/lib/nanomonsv/data/LINE1.hg38.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/nanomonsv/data 2024-04-08T06:35:31,191 copying build/lib/nanomonsv/data/LINE1.hg19.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/nanomonsv/data 2024-04-08T06:35:31,193 copying build/lib/nanomonsv/data/LINE1.hg38.bed.gz -> build/bdist.linux-armv7l/wheel/nanomonsv/data 2024-04-08T06:35:31,197 copying build/lib/nanomonsv/version.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,199 copying build/lib/nanomonsv/count_sread_by_alignment.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,201 copying build/lib/nanomonsv/my_seq.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,203 copying build/lib/nanomonsv/filt.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,206 copying build/lib/nanomonsv/cluster.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,208 copying build/lib/nanomonsv/swalign.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,211 copying build/lib/nanomonsv/pyssw.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,213 copying build/lib/nanomonsv/logger.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,215 copying build/lib/nanomonsv/locate_bp_sbnd.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,216 copying build/lib/nanomonsv/ssw_lib.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,219 copying build/lib/nanomonsv/run.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,222 copying build/lib/nanomonsv/long_read_validate.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,224 copying build/lib/nanomonsv/generate_consensus.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,227 copying build/lib/nanomonsv/gather_support_read_seq.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,229 copying build/lib/nanomonsv/utils.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,231 copying build/lib/nanomonsv/arg_parser.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,234 copying build/lib/nanomonsv/locate_bp.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,236 copying build/lib/nanomonsv/vcf_convert.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,238 copying build/lib/nanomonsv/cluster_sbnd.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,241 copying build/lib/nanomonsv/merge_control.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,243 copying build/lib/nanomonsv/post_proc.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,246 copying build/lib/nanomonsv/insert_classify.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,248 copying build/lib/nanomonsv/__init__.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,250 copying build/lib/nanomonsv/parse.py -> build/bdist.linux-armv7l/wheel/nanomonsv 2024-04-08T06:35:31,252 running install_egg_info 2024-04-08T06:35:31,316 running egg_info 2024-04-08T06:35:31,341 writing nanomonsv.egg-info/PKG-INFO 2024-04-08T06:35:31,344 writing dependency_links to nanomonsv.egg-info/dependency_links.txt 2024-04-08T06:35:31,346 writing entry points to nanomonsv.egg-info/entry_points.txt 2024-04-08T06:35:31,348 writing top-level names to nanomonsv.egg-info/top_level.txt 2024-04-08T06:35:31,377 reading manifest file 'nanomonsv.egg-info/SOURCES.txt' 2024-04-08T06:35:31,380 adding license file 'LICENSE' 2024-04-08T06:35:31,383 writing manifest file 'nanomonsv.egg-info/SOURCES.txt' 2024-04-08T06:35:31,384 Copying nanomonsv.egg-info to build/bdist.linux-armv7l/wheel/nanomonsv-0.7.2-py3.11.egg-info 2024-04-08T06:35:31,395 running install_scripts 2024-04-08T06:35:31,412 creating build/bdist.linux-armv7l/wheel/nanomonsv-0.7.2.dist-info/WHEEL 2024-04-08T06:35:31,414 creating '/tmp/pip-wheel-t_hst0r5/nanomonsv-0.7.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-08T06:35:31,417 adding 'nanomonsv/__init__.py' 2024-04-08T06:35:31,419 adding 'nanomonsv/arg_parser.py' 2024-04-08T06:35:31,421 adding 'nanomonsv/cluster.py' 2024-04-08T06:35:31,423 adding 'nanomonsv/cluster_sbnd.py' 2024-04-08T06:35:31,426 adding 'nanomonsv/count_sread_by_alignment.py' 2024-04-08T06:35:31,428 adding 'nanomonsv/filt.py' 2024-04-08T06:35:31,430 adding 'nanomonsv/gather_support_read_seq.py' 2024-04-08T06:35:31,432 adding 'nanomonsv/generate_consensus.py' 2024-04-08T06:35:31,435 adding 'nanomonsv/insert_classify.py' 2024-04-08T06:35:31,437 adding 'nanomonsv/locate_bp.py' 2024-04-08T06:35:31,438 adding 'nanomonsv/locate_bp_sbnd.py' 2024-04-08T06:35:31,439 adding 'nanomonsv/logger.py' 2024-04-08T06:35:31,441 adding 'nanomonsv/long_read_validate.py' 2024-04-08T06:35:31,443 adding 'nanomonsv/merge_control.py' 2024-04-08T06:35:31,444 adding 'nanomonsv/my_seq.py' 2024-04-08T06:35:31,446 adding 'nanomonsv/parse.py' 2024-04-08T06:35:31,448 adding 'nanomonsv/post_proc.py' 2024-04-08T06:35:31,450 adding 'nanomonsv/pyssw.py' 2024-04-08T06:35:31,453 adding 'nanomonsv/run.py' 2024-04-08T06:35:31,455 adding 'nanomonsv/smith_waterman.py' 2024-04-08T06:35:31,457 adding 'nanomonsv/ssw_lib.py' 2024-04-08T06:35:31,459 adding 'nanomonsv/swalign.py' 2024-04-08T06:35:31,461 adding 'nanomonsv/utils.py' 2024-04-08T06:35:31,462 adding 'nanomonsv/vcf_convert.py' 2024-04-08T06:35:31,464 adding 'nanomonsv/version.py' 2024-04-08T06:35:31,465 adding 'nanomonsv/data/LINE1.hg19.bed.gz' 2024-04-08T06:35:31,466 adding 'nanomonsv/data/LINE1.hg19.bed.gz.tbi' 2024-04-08T06:35:31,477 adding 'nanomonsv/data/LINE1.hg38.bed.gz' 2024-04-08T06:35:31,484 adding 'nanomonsv/data/LINE1.hg38.bed.gz.tbi' 2024-04-08T06:35:31,491 adding 'nanomonsv-0.7.2.dist-info/LICENSE' 2024-04-08T06:35:31,494 adding 'nanomonsv-0.7.2.dist-info/METADATA' 2024-04-08T06:35:31,495 adding 'nanomonsv-0.7.2.dist-info/WHEEL' 2024-04-08T06:35:31,496 adding 'nanomonsv-0.7.2.dist-info/entry_points.txt' 2024-04-08T06:35:31,497 adding 'nanomonsv-0.7.2.dist-info/top_level.txt' 2024-04-08T06:35:31,498 adding 'nanomonsv-0.7.2.dist-info/RECORD' 2024-04-08T06:35:31,502 removing build/bdist.linux-armv7l/wheel 2024-04-08T06:35:31,622 Building wheel for nanomonsv (setup.py): finished with status 'done' 2024-04-08T06:35:31,627 Created wheel for nanomonsv: filename=nanomonsv-0.7.2-py3-none-any.whl size=220489 sha256=4b3786aa7c8ee242bae0d4d4e343055536286c4e04cecb06a59571b1280876a5 2024-04-08T06:35:31,629 Stored in directory: /tmp/pip-ephem-wheel-cache-hdj0uhnf/wheels/dc/e7/c3/f365a1b7799d99133b78883ddb7fcf086077afea2823591dc0 2024-04-08T06:35:31,643 Successfully built nanomonsv 2024-04-08T06:35:31,651 Removed build tracker: '/tmp/pip-build-tracker-f6p6_f0m'