2024-04-08T17:13:30,560 Created temporary directory: /tmp/pip-build-tracker-advkmk3t 2024-04-08T17:13:30,562 Initialized build tracking at /tmp/pip-build-tracker-advkmk3t 2024-04-08T17:13:30,562 Created build tracker: /tmp/pip-build-tracker-advkmk3t 2024-04-08T17:13:30,563 Entered build tracker: /tmp/pip-build-tracker-advkmk3t 2024-04-08T17:13:30,563 Created temporary directory: /tmp/pip-wheel-s46b6wuv 2024-04-08T17:13:30,567 Created temporary directory: /tmp/pip-ephem-wheel-cache-jzge8nw7 2024-04-08T17:13:30,589 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-08T17:13:30,593 2 location(s) to search for versions of brainglobe-atlasapi: 2024-04-08T17:13:30,593 * https://pypi.org/simple/brainglobe-atlasapi/ 2024-04-08T17:13:30,593 * https://www.piwheels.org/simple/brainglobe-atlasapi/ 2024-04-08T17:13:30,594 Fetching project page and analyzing links: https://pypi.org/simple/brainglobe-atlasapi/ 2024-04-08T17:13:30,594 Getting page https://pypi.org/simple/brainglobe-atlasapi/ 2024-04-08T17:13:30,596 Found index url https://pypi.org/simple/ 2024-04-08T17:13:30,810 Fetched page https://pypi.org/simple/brainglobe-atlasapi/ as application/vnd.pypi.simple.v1+json 2024-04-08T17:13:30,814 Found link https://files.pythonhosted.org/packages/94/5d/aa9e95d6061393eb9f2184e2a9fdab7d9d404ffb9e8a92555689bc696017/brainglobe-atlasapi-2.0.0.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.0 2024-04-08T17:13:30,814 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/02/2d/b41a734b9d08e1e08e4090d1f3d69d880c8e11d96cf857a620264943cbb5/brainglobe_atlasapi-2.0.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-04-08T17:13:30,815 Found link https://files.pythonhosted.org/packages/22/6c/8007408026e0a98e0d9e7f5b2679ccacfe18c270480a09e75ff95f395ffe/brainglobe-atlasapi-2.0.1.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.1 2024-04-08T17:13:30,816 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/a6/d9/ea6b4b2e2d81d2c4d7512eb4f89d3185eb3f72acb208a81e232f00247ec1/brainglobe_atlasapi-2.0.1-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-04-08T17:13:30,817 Found link https://files.pythonhosted.org/packages/67/e4/e1268e42432b3be14f570730be1a3350333b8a85027c4156c4fee6057d77/brainglobe-atlasapi-2.0.2.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.2 2024-04-08T17:13:30,818 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/26/81/ff6f1ca65117f8e7ea4e840f90b77c0fbce04615f5bc52711c86ddb49ab0/brainglobe_atlasapi-2.0.2-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-04-08T17:13:30,819 Found link https://files.pythonhosted.org/packages/c4/0b/6907f5c2329bdadd7208a883c633c5c5da48beae9439aac0a8bc6f7aa967/brainglobe-atlasapi-2.0.3.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.3 2024-04-08T17:13:30,819 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/81/e7/b6504f081c4481580326c1eff097f5fcdda3cbcb3e467a52ed2a433f209b/brainglobe_atlasapi-2.0.3-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-04-08T17:13:30,820 Found link https://files.pythonhosted.org/packages/a1/05/63f30291d10561bdde617345d08a93cf222894873f3437868992c1e7e98e/brainglobe-atlasapi-2.0.4.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.4 2024-04-08T17:13:30,821 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/fc/16/86c8589b4f72708382411a9b5074572bf568b835ac9af963515cf0661b49/brainglobe_atlasapi-2.0.4-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-04-08T17:13:30,822 Found link https://files.pythonhosted.org/packages/89/d6/77bcf09daa8fb694f86b9544817a4f12db2f1b3f329a228e19c4d67108f9/brainglobe-atlasapi-2.0.5.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.5 2024-04-08T17:13:30,823 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/f4/90/4d74f8627c90886a5abb9cb7bc636d02c2a3bc94bf68683841695b8c4131/brainglobe_atlasapi-2.0.5-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-04-08T17:13:30,824 Fetching project page and analyzing links: https://www.piwheels.org/simple/brainglobe-atlasapi/ 2024-04-08T17:13:30,824 Getting page https://www.piwheels.org/simple/brainglobe-atlasapi/ 2024-04-08T17:13:30,825 Found index url https://www.piwheels.org/simple/ 2024-04-08T17:13:31,079 Fetched page https://www.piwheels.org/simple/brainglobe-atlasapi/ as text/html 2024-04-08T17:13:31,082 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.4-py3-none-any.whl#sha256=0a7530f79c49e0c3943316ffabf7ffc0e551e85ff3080598473118f80dc2de5a (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-04-08T17:13:31,082 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.3-py3-none-any.whl#sha256=e09156e510d9f50b8ef4f233d9e1ff849730bc7e7c6637e6d213e3f234a524b6 (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-04-08T17:13:31,083 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.2-py3-none-any.whl#sha256=d213d9e3582e85a7b61afbe4b42dd9d1d557b2b006fe549a46a00777a51ca3db (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-04-08T17:13:31,083 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.1-py3-none-any.whl#sha256=d73a30d618071567cc1cc17cc2a5c914b373403d252e2556b2c4c8460481ca92 (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-04-08T17:13:31,084 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.0-py3-none-any.whl#sha256=08327d0766a86cc7dc8836cbced68c179e2f26baad4ae391d4440a8dd377a0f1 (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-04-08T17:13:31,085 Skipping link: not a file: https://www.piwheels.org/simple/brainglobe-atlasapi/ 2024-04-08T17:13:31,085 Skipping link: not a file: https://pypi.org/simple/brainglobe-atlasapi/ 2024-04-08T17:13:31,105 Given no hashes to check 1 links for project 'brainglobe-atlasapi': discarding no candidates 2024-04-08T17:13:31,123 Collecting brainglobe-atlasapi==2.0.5 2024-04-08T17:13:31,125 Created temporary directory: /tmp/pip-unpack-ciftl_9d 2024-04-08T17:13:31,336 Downloading brainglobe-atlasapi-2.0.5.tar.gz (57 kB) 2024-04-08T17:13:31,566 Added brainglobe-atlasapi==2.0.5 from https://files.pythonhosted.org/packages/89/d6/77bcf09daa8fb694f86b9544817a4f12db2f1b3f329a228e19c4d67108f9/brainglobe-atlasapi-2.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-advkmk3t' 2024-04-08T17:13:31,574 Created temporary directory: /tmp/pip-build-env-01hbvzh1 2024-04-08T17:13:31,579 Installing build dependencies: started 2024-04-08T17:13:31,580 Running command pip subprocess to install build dependencies 2024-04-08T17:13:32,740 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-08T17:13:33,290 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-08T17:13:35,566 Collecting setuptools>=45 2024-04-08T17:13:35,584 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-04-08T17:13:35,830 Collecting wheel 2024-04-08T17:13:35,845 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-08T17:13:36,128 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-04-08T17:13:36,144 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2024-04-08T17:13:36,496 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-04-08T17:13:36,510 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-04-08T17:13:36,631 Collecting typing-extensions (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-04-08T17:13:36,665 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.11.0-py3-none-any.whl (34 kB) 2024-04-08T17:13:39,235 Installing collected packages: wheel, typing-extensions, setuptools, packaging, setuptools_scm 2024-04-08T17:13:39,465 Creating /tmp/pip-build-env-01hbvzh1/overlay/local/bin 2024-04-08T17:13:39,467 changing mode of /tmp/pip-build-env-01hbvzh1/overlay/local/bin/wheel to 755 2024-04-08T17:13:43,129 Successfully installed packaging-24.0 setuptools-69.2.0 setuptools_scm-8.0.4 typing-extensions-4.11.0 wheel-0.43.0 2024-04-08T17:13:43,757 Installing build dependencies: finished with status 'done' 2024-04-08T17:13:43,761 Getting requirements to build wheel: started 2024-04-08T17:13:43,762 Running command Getting requirements to build wheel 2024-04-08T17:13:44,911 running egg_info 2024-04-08T17:13:44,918 writing brainglobe_atlasapi.egg-info/PKG-INFO 2024-04-08T17:13:44,926 writing dependency_links to brainglobe_atlasapi.egg-info/dependency_links.txt 2024-04-08T17:13:44,928 writing entry points to brainglobe_atlasapi.egg-info/entry_points.txt 2024-04-08T17:13:44,932 writing requirements to brainglobe_atlasapi.egg-info/requires.txt 2024-04-08T17:13:44,933 writing top-level names to brainglobe_atlasapi.egg-info/top_level.txt 2024-04-08T17:13:44,977 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-08T17:13:44,980 reading manifest file 'brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-04-08T17:13:44,983 reading manifest template 'MANIFEST.in' 2024-04-08T17:13:44,985 warning: no files found matching 'requirements.txt' 2024-04-08T17:13:44,985 warning: no previously-included files found matching '.codecov.yml' 2024-04-08T17:13:44,986 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-04-08T17:13:44,987 warning: manifest_maker: MANIFEST.in, line 9: 'graft' expects a single 2024-04-08T17:13:44,988 no previously-included directories found matching 'tests' 2024-04-08T17:13:44,989 no previously-included directories found matching 'tutorials' 2024-04-08T17:13:44,989 no previously-included directories found matching 'brainglobe_atlasapi/atlas_generation/atlas_scripts/*' 2024-04-08T17:13:44,990 adding license file 'LICENSE' 2024-04-08T17:13:44,993 writing manifest file 'brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-04-08T17:13:45,117 Getting requirements to build wheel: finished with status 'done' 2024-04-08T17:13:45,130 Created temporary directory: /tmp/pip-modern-metadata-dzc21rup 2024-04-08T17:13:45,133 Preparing metadata (pyproject.toml): started 2024-04-08T17:13:45,134 Running command Preparing metadata (pyproject.toml) 2024-04-08T17:13:46,047 running dist_info 2024-04-08T17:13:46,271 creating /tmp/pip-modern-metadata-dzc21rup/brainglobe_atlasapi.egg-info 2024-04-08T17:13:46,276 writing /tmp/pip-modern-metadata-dzc21rup/brainglobe_atlasapi.egg-info/PKG-INFO 2024-04-08T17:13:46,286 writing dependency_links to /tmp/pip-modern-metadata-dzc21rup/brainglobe_atlasapi.egg-info/dependency_links.txt 2024-04-08T17:13:46,290 writing entry points to /tmp/pip-modern-metadata-dzc21rup/brainglobe_atlasapi.egg-info/entry_points.txt 2024-04-08T17:13:46,513 writing requirements to /tmp/pip-modern-metadata-dzc21rup/brainglobe_atlasapi.egg-info/requires.txt 2024-04-08T17:13:46,514 writing top-level names to /tmp/pip-modern-metadata-dzc21rup/brainglobe_atlasapi.egg-info/top_level.txt 2024-04-08T17:13:46,517 writing manifest file '/tmp/pip-modern-metadata-dzc21rup/brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-04-08T17:13:46,566 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-08T17:13:46,570 reading manifest file '/tmp/pip-modern-metadata-dzc21rup/brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-04-08T17:13:46,573 reading manifest template 'MANIFEST.in' 2024-04-08T17:13:46,574 warning: no files found matching 'requirements.txt' 2024-04-08T17:13:46,575 warning: no previously-included files found matching '.codecov.yml' 2024-04-08T17:13:46,576 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-04-08T17:13:46,577 warning: manifest_maker: MANIFEST.in, line 9: 'graft' expects a single 2024-04-08T17:13:46,578 no previously-included directories found matching 'tests' 2024-04-08T17:13:46,579 no previously-included directories found matching 'tutorials' 2024-04-08T17:13:46,581 no previously-included directories found matching 'brainglobe_atlasapi/atlas_generation/atlas_scripts/*' 2024-04-08T17:13:46,851 adding license file 'LICENSE' 2024-04-08T17:13:46,851 writing manifest file '/tmp/pip-modern-metadata-dzc21rup/brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-04-08T17:13:46,852 creating '/tmp/pip-modern-metadata-dzc21rup/brainglobe_atlasapi-2.0.5.dist-info' 2024-04-08T17:13:47,058 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-08T17:13:47,064 Source in /tmp/pip-wheel-s46b6wuv/brainglobe-atlasapi_797e31b309c0407aa1ec91ab1223e2a9 has version 2.0.5, which satisfies requirement brainglobe-atlasapi==2.0.5 from https://files.pythonhosted.org/packages/89/d6/77bcf09daa8fb694f86b9544817a4f12db2f1b3f329a228e19c4d67108f9/brainglobe-atlasapi-2.0.5.tar.gz 2024-04-08T17:13:47,065 Removed brainglobe-atlasapi==2.0.5 from https://files.pythonhosted.org/packages/89/d6/77bcf09daa8fb694f86b9544817a4f12db2f1b3f329a228e19c4d67108f9/brainglobe-atlasapi-2.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-advkmk3t' 2024-04-08T17:13:47,073 Created temporary directory: /tmp/pip-unpack-v1eyno3d 2024-04-08T17:13:47,075 Created temporary directory: /tmp/pip-unpack-0n4b9jjn 2024-04-08T17:13:47,127 Building wheels for collected packages: brainglobe-atlasapi 2024-04-08T17:13:47,132 Created temporary directory: /tmp/pip-wheel-6t1qkmre 2024-04-08T17:13:47,133 Destination directory: /tmp/pip-wheel-6t1qkmre 2024-04-08T17:13:47,136 Building wheel for brainglobe-atlasapi (pyproject.toml): started 2024-04-08T17:13:47,137 Running command Building wheel for brainglobe-atlasapi (pyproject.toml) 2024-04-08T17:13:48,249 running bdist_wheel 2024-04-08T17:13:48,272 running build 2024-04-08T17:13:48,273 running build_py 2024-04-08T17:13:48,279 creating build 2024-04-08T17:13:48,280 creating build/lib 2024-04-08T17:13:48,281 creating build/lib/brainglobe_atlasapi 2024-04-08T17:13:48,282 copying brainglobe_atlasapi/list_atlases.py -> build/lib/brainglobe_atlasapi 2024-04-08T17:13:48,285 copying brainglobe_atlasapi/core.py -> build/lib/brainglobe_atlasapi 2024-04-08T17:13:48,288 copying brainglobe_atlasapi/__init__.py -> build/lib/brainglobe_atlasapi 2024-04-08T17:13:48,290 copying brainglobe_atlasapi/descriptors.py -> build/lib/brainglobe_atlasapi 2024-04-08T17:13:48,293 copying brainglobe_atlasapi/config.py -> build/lib/brainglobe_atlasapi 2024-04-08T17:13:48,297 copying brainglobe_atlasapi/bg_atlas.py -> build/lib/brainglobe_atlasapi 2024-04-08T17:13:48,300 copying brainglobe_atlasapi/update_atlases.py -> build/lib/brainglobe_atlasapi 2024-04-08T17:13:48,302 copying brainglobe_atlasapi/structure_class.py -> build/lib/brainglobe_atlasapi 2024-04-08T17:13:48,303 copying brainglobe_atlasapi/utils.py -> build/lib/brainglobe_atlasapi 2024-04-08T17:13:48,306 copying brainglobe_atlasapi/cli.py -> build/lib/brainglobe_atlasapi 2024-04-08T17:13:48,308 copying brainglobe_atlasapi/structure_tree_util.py -> build/lib/brainglobe_atlasapi 2024-04-08T17:13:48,311 creating build/lib/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,311 copying brainglobe_atlasapi/atlas_generation/main_script.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,314 copying brainglobe_atlasapi/atlas_generation/__init__.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,316 copying brainglobe_atlasapi/atlas_generation/stacks.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,318 copying brainglobe_atlasapi/atlas_generation/mesh_utils.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,320 copying brainglobe_atlasapi/atlas_generation/validate_atlases.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,323 copying brainglobe_atlasapi/atlas_generation/wrapup.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,326 copying brainglobe_atlasapi/atlas_generation/volume_utils.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,328 copying brainglobe_atlasapi/atlas_generation/structure_json_to_csv.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,330 copying brainglobe_atlasapi/atlas_generation/metadata_utils.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,334 copying brainglobe_atlasapi/atlas_generation/structures.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,337 creating build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,338 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,340 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/__init__.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,342 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/whs_sd_rat.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,344 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/admba_3d_dev_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,347 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_lsfm_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,349 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,351 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/mpin_zfish.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,354 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_developmental_ccf_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,356 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,359 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_cord.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,361 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/osten_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,364 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/princeton_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,367 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/humanatlas.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,369 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/azba_zfish.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,372 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,374 running egg_info 2024-04-08T17:13:48,379 writing brainglobe_atlasapi.egg-info/PKG-INFO 2024-04-08T17:13:48,387 writing dependency_links to brainglobe_atlasapi.egg-info/dependency_links.txt 2024-04-08T17:13:48,388 writing entry points to brainglobe_atlasapi.egg-info/entry_points.txt 2024-04-08T17:13:48,392 writing requirements to brainglobe_atlasapi.egg-info/requires.txt 2024-04-08T17:13:48,393 writing top-level names to brainglobe_atlasapi.egg-info/top_level.txt 2024-04-08T17:13:48,422 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-08T17:13:48,425 reading manifest file 'brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-04-08T17:13:48,428 reading manifest template 'MANIFEST.in' 2024-04-08T17:13:48,429 warning: no files found matching 'requirements.txt' 2024-04-08T17:13:48,430 warning: no previously-included files found matching '.codecov.yml' 2024-04-08T17:13:48,430 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-04-08T17:13:48,431 warning: manifest_maker: MANIFEST.in, line 9: 'graft' expects a single 2024-04-08T17:13:48,432 no previously-included directories found matching 'tests' 2024-04-08T17:13:48,432 no previously-included directories found matching 'tutorials' 2024-04-08T17:13:48,433 no previously-included directories found matching 'brainglobe_atlasapi/atlas_generation/atlas_scripts/*' 2024-04-08T17:13:48,433 adding license file 'LICENSE' 2024-04-08T17:13:48,436 writing manifest file 'brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-04-08T17:13:48,450 installing to build/bdist.linux-armv7l/wheel 2024-04-08T17:13:48,451 running install 2024-04-08T17:13:48,474 running install_lib 2024-04-08T17:13:48,480 creating build/bdist.linux-armv7l 2024-04-08T17:13:48,480 creating build/bdist.linux-armv7l/wheel 2024-04-08T17:13:48,482 creating build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-04-08T17:13:48,483 copying build/lib/brainglobe_atlasapi/list_atlases.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-04-08T17:13:48,486 copying build/lib/brainglobe_atlasapi/core.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-04-08T17:13:48,489 copying build/lib/brainglobe_atlasapi/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-04-08T17:13:48,490 copying build/lib/brainglobe_atlasapi/descriptors.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-04-08T17:13:48,493 copying build/lib/brainglobe_atlasapi/config.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-04-08T17:13:48,496 creating build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,497 copying build/lib/brainglobe_atlasapi/atlas_generation/main_script.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,499 copying build/lib/brainglobe_atlasapi/atlas_generation/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,501 copying build/lib/brainglobe_atlasapi/atlas_generation/stacks.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,502 copying build/lib/brainglobe_atlasapi/atlas_generation/mesh_utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,505 copying build/lib/brainglobe_atlasapi/atlas_generation/validate_atlases.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,507 copying build/lib/brainglobe_atlasapi/atlas_generation/wrapup.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,510 copying build/lib/brainglobe_atlasapi/atlas_generation/volume_utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,511 copying build/lib/brainglobe_atlasapi/atlas_generation/structure_json_to_csv.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,514 creating build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,515 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,517 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,519 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/whs_sd_rat.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,521 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/admba_3d_dev_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,524 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_lsfm_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,527 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,529 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/mpin_zfish.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,531 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_developmental_ccf_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,534 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,536 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_cord.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,538 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/osten_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,540 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/princeton_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,543 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/humanatlas.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,545 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/azba_zfish.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,547 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-04-08T17:13:48,550 copying build/lib/brainglobe_atlasapi/atlas_generation/metadata_utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,552 copying build/lib/brainglobe_atlasapi/atlas_generation/structures.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-04-08T17:13:48,554 copying build/lib/brainglobe_atlasapi/bg_atlas.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-04-08T17:13:48,556 copying build/lib/brainglobe_atlasapi/update_atlases.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-04-08T17:13:48,558 copying build/lib/brainglobe_atlasapi/structure_class.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-04-08T17:13:48,560 copying build/lib/brainglobe_atlasapi/utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-04-08T17:13:48,563 copying build/lib/brainglobe_atlasapi/cli.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-04-08T17:13:48,564 copying build/lib/brainglobe_atlasapi/structure_tree_util.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-04-08T17:13:48,566 running install_egg_info 2024-04-08T17:13:48,571 Copying brainglobe_atlasapi.egg-info to build/bdist.linux-armv7l/wheel/brainglobe_atlasapi-2.0.5-py3.11.egg-info 2024-04-08T17:13:48,584 running install_scripts 2024-04-08T17:13:48,609 creating build/bdist.linux-armv7l/wheel/brainglobe_atlasapi-2.0.5.dist-info/WHEEL 2024-04-08T17:13:48,611 creating '/tmp/pip-wheel-6t1qkmre/.tmp-pd60dl0z/brainglobe_atlasapi-2.0.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-08T17:13:48,613 adding 'brainglobe_atlasapi/__init__.py' 2024-04-08T17:13:48,615 adding 'brainglobe_atlasapi/bg_atlas.py' 2024-04-08T17:13:48,617 adding 'brainglobe_atlasapi/cli.py' 2024-04-08T17:13:48,618 adding 'brainglobe_atlasapi/config.py' 2024-04-08T17:13:48,620 adding 'brainglobe_atlasapi/core.py' 2024-04-08T17:13:48,622 adding 'brainglobe_atlasapi/descriptors.py' 2024-04-08T17:13:48,623 adding 'brainglobe_atlasapi/list_atlases.py' 2024-04-08T17:13:48,625 adding 'brainglobe_atlasapi/structure_class.py' 2024-04-08T17:13:48,626 adding 'brainglobe_atlasapi/structure_tree_util.py' 2024-04-08T17:13:48,627 adding 'brainglobe_atlasapi/update_atlases.py' 2024-04-08T17:13:48,629 adding 'brainglobe_atlasapi/utils.py' 2024-04-08T17:13:48,631 adding 'brainglobe_atlasapi/atlas_generation/__init__.py' 2024-04-08T17:13:48,633 adding 'brainglobe_atlasapi/atlas_generation/main_script.py' 2024-04-08T17:13:48,635 adding 'brainglobe_atlasapi/atlas_generation/mesh_utils.py' 2024-04-08T17:13:48,637 adding 'brainglobe_atlasapi/atlas_generation/metadata_utils.py' 2024-04-08T17:13:48,638 adding 'brainglobe_atlasapi/atlas_generation/stacks.py' 2024-04-08T17:13:48,639 adding 'brainglobe_atlasapi/atlas_generation/structure_json_to_csv.py' 2024-04-08T17:13:48,641 adding 'brainglobe_atlasapi/atlas_generation/structures.py' 2024-04-08T17:13:48,643 adding 'brainglobe_atlasapi/atlas_generation/validate_atlases.py' 2024-04-08T17:13:48,644 adding 'brainglobe_atlasapi/atlas_generation/volume_utils.py' 2024-04-08T17:13:48,646 adding 'brainglobe_atlasapi/atlas_generation/wrapup.py' 2024-04-08T17:13:48,648 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/__init__.py' 2024-04-08T17:13:48,650 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/admba_3d_dev_mouse.py' 2024-04-08T17:13:48,652 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_cord.py' 2024-04-08T17:13:48,654 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse.py' 2024-04-08T17:13:48,655 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/azba_zfish.py' 2024-04-08T17:13:48,657 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py' 2024-04-08T17:13:48,659 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/humanatlas.py' 2024-04-08T17:13:48,662 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_developmental_ccf_mouse.py' 2024-04-08T17:13:48,663 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_mouse.py' 2024-04-08T17:13:48,666 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/mpin_zfish.py' 2024-04-08T17:13:48,668 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/osten_mouse.py' 2024-04-08T17:13:48,670 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_lsfm_mouse.py' 2024-04-08T17:13:48,672 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/princeton_mouse.py' 2024-04-08T17:13:48,674 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py' 2024-04-08T17:13:48,676 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/whs_sd_rat.py' 2024-04-08T17:13:48,678 adding 'brainglobe_atlasapi-2.0.5.dist-info/LICENSE' 2024-04-08T17:13:48,680 adding 'brainglobe_atlasapi-2.0.5.dist-info/METADATA' 2024-04-08T17:13:48,682 adding 'brainglobe_atlasapi-2.0.5.dist-info/WHEEL' 2024-04-08T17:13:48,683 adding 'brainglobe_atlasapi-2.0.5.dist-info/entry_points.txt' 2024-04-08T17:13:48,684 adding 'brainglobe_atlasapi-2.0.5.dist-info/top_level.txt' 2024-04-08T17:13:48,685 adding 'brainglobe_atlasapi-2.0.5.dist-info/RECORD' 2024-04-08T17:13:48,690 removing build/bdist.linux-armv7l/wheel 2024-04-08T17:13:48,830 Building wheel for brainglobe-atlasapi (pyproject.toml): finished with status 'done' 2024-04-08T17:13:48,838 Created wheel for brainglobe-atlasapi: filename=brainglobe_atlasapi-2.0.5-py3-none-any.whl size=80355 sha256=cab96900cfc376f6e6574cd4a76faff1f9852825fd13a5602f7a1e2d7d72c630 2024-04-08T17:13:48,840 Stored in directory: /tmp/pip-ephem-wheel-cache-jzge8nw7/wheels/da/08/5b/3ebc4f125d33d67b4f8846dd6947f83d707b598323309222eb 2024-04-08T17:13:48,855 Successfully built brainglobe-atlasapi 2024-04-08T17:13:48,862 Removed build tracker: '/tmp/pip-build-tracker-advkmk3t'