2024-04-08T20:42:12,743 Created temporary directory: /tmp/pip-build-tracker-janyef10 2024-04-08T20:42:12,747 Initialized build tracking at /tmp/pip-build-tracker-janyef10 2024-04-08T20:42:12,748 Created build tracker: /tmp/pip-build-tracker-janyef10 2024-04-08T20:42:13,180 Entered build tracker: /tmp/pip-build-tracker-janyef10 2024-04-08T20:42:13,181 Created temporary directory: /tmp/pip-wheel-dsjbvvtg 2024-04-08T20:42:13,188 Created temporary directory: /tmp/pip-ephem-wheel-cache-emkz4z5b 2024-04-08T20:42:13,230 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-08T20:42:13,236 2 location(s) to search for versions of jaeger-bio: 2024-04-08T20:42:13,236 * https://pypi.org/simple/jaeger-bio/ 2024-04-08T20:42:13,236 * https://www.piwheels.org/simple/jaeger-bio/ 2024-04-08T20:42:13,237 Fetching project page and analyzing links: https://pypi.org/simple/jaeger-bio/ 2024-04-08T20:42:13,238 Getting page https://pypi.org/simple/jaeger-bio/ 2024-04-08T20:42:13,240 Found index url https://pypi.org/simple/ 2024-04-08T20:42:13,484 Fetched page https://pypi.org/simple/jaeger-bio/ as application/vnd.pypi.simple.v1+json 2024-04-08T20:42:13,486 Skipping link: No binaries permitted for jaeger-bio: https://files.pythonhosted.org/packages/fc/1d/e19229335e7fcef34753dcc33873ff17c0aeccbeb44116d68f217c491895/jaeger_bio-1.1.24-py3-none-any.whl (from https://pypi.org/simple/jaeger-bio/) 2024-04-08T20:42:13,487 Found link https://files.pythonhosted.org/packages/62/99/4af4cebace227b020dc804b3cfeeef28221de33068a0f69baa58cddb5eef/jaeger-bio-1.1.25.tar.gz (from https://pypi.org/simple/jaeger-bio/), version: 1.1.25 2024-04-08T20:42:13,487 Skipping link: No binaries permitted for jaeger-bio: https://files.pythonhosted.org/packages/16/cb/f44263cf580c8b996a32d861a531dd29a40660093a20b8416b748c26defd/jaeger_bio-1.1.25-py3-none-any.whl (from https://pypi.org/simple/jaeger-bio/) 2024-04-08T20:42:13,488 Fetching project page and analyzing links: https://www.piwheels.org/simple/jaeger-bio/ 2024-04-08T20:42:13,489 Getting page https://www.piwheels.org/simple/jaeger-bio/ 2024-04-08T20:42:13,490 Found index url https://www.piwheels.org/simple/ 2024-04-08T20:42:13,818 Fetched page https://www.piwheels.org/simple/jaeger-bio/ as text/html 2024-04-08T20:42:13,819 Skipping link: not a file: https://www.piwheels.org/simple/jaeger-bio/ 2024-04-08T20:42:13,820 Skipping link: not a file: https://pypi.org/simple/jaeger-bio/ 2024-04-08T20:42:13,838 Given no hashes to check 1 links for project 'jaeger-bio': discarding no candidates 2024-04-08T20:42:13,856 Collecting jaeger-bio==1.1.25 2024-04-08T20:42:13,859 Created temporary directory: /tmp/pip-unpack-3xc28v63 2024-04-08T20:42:14,084 Downloading jaeger-bio-1.1.25.tar.gz (33.4 MB) 2024-04-08T20:42:22,762 Added jaeger-bio==1.1.25 from https://files.pythonhosted.org/packages/62/99/4af4cebace227b020dc804b3cfeeef28221de33068a0f69baa58cddb5eef/jaeger-bio-1.1.25.tar.gz to build tracker '/tmp/pip-build-tracker-janyef10' 2024-04-08T20:42:22,766 Running setup.py (path:/tmp/pip-wheel-dsjbvvtg/jaeger-bio_5fd523323f604ffeb82c908b6a6c5788/setup.py) egg_info for package jaeger-bio 2024-04-08T20:42:22,767 Created temporary directory: /tmp/pip-pip-egg-info-hc6fpts0 2024-04-08T20:42:22,767 Preparing metadata (setup.py): started 2024-04-08T20:42:22,769 Running command python setup.py egg_info 2024-04-08T20:42:23,876 running egg_info 2024-04-08T20:42:23,878 creating /tmp/pip-pip-egg-info-hc6fpts0/jaeger_bio.egg-info 2024-04-08T20:42:23,904 writing /tmp/pip-pip-egg-info-hc6fpts0/jaeger_bio.egg-info/PKG-INFO 2024-04-08T20:42:23,908 writing dependency_links to /tmp/pip-pip-egg-info-hc6fpts0/jaeger_bio.egg-info/dependency_links.txt 2024-04-08T20:42:23,911 writing requirements to /tmp/pip-pip-egg-info-hc6fpts0/jaeger_bio.egg-info/requires.txt 2024-04-08T20:42:23,912 writing top-level names to /tmp/pip-pip-egg-info-hc6fpts0/jaeger_bio.egg-info/top_level.txt 2024-04-08T20:42:23,913 writing manifest file '/tmp/pip-pip-egg-info-hc6fpts0/jaeger_bio.egg-info/SOURCES.txt' 2024-04-08T20:42:24,027 reading manifest file '/tmp/pip-pip-egg-info-hc6fpts0/jaeger_bio.egg-info/SOURCES.txt' 2024-04-08T20:42:24,029 adding license file 'LICENSE' 2024-04-08T20:42:24,032 writing manifest file '/tmp/pip-pip-egg-info-hc6fpts0/jaeger_bio.egg-info/SOURCES.txt' 2024-04-08T20:42:24,140 Preparing metadata (setup.py): finished with status 'done' 2024-04-08T20:42:24,145 Source in /tmp/pip-wheel-dsjbvvtg/jaeger-bio_5fd523323f604ffeb82c908b6a6c5788 has version 1.1.25, which satisfies requirement jaeger-bio==1.1.25 from https://files.pythonhosted.org/packages/62/99/4af4cebace227b020dc804b3cfeeef28221de33068a0f69baa58cddb5eef/jaeger-bio-1.1.25.tar.gz 2024-04-08T20:42:24,146 Removed jaeger-bio==1.1.25 from https://files.pythonhosted.org/packages/62/99/4af4cebace227b020dc804b3cfeeef28221de33068a0f69baa58cddb5eef/jaeger-bio-1.1.25.tar.gz from build tracker '/tmp/pip-build-tracker-janyef10' 2024-04-08T20:42:24,153 Created temporary directory: /tmp/pip-unpack-yj_zisbz 2024-04-08T20:42:24,154 Created temporary directory: /tmp/pip-unpack-k_pcyc2r 2024-04-08T20:42:24,173 Building wheels for collected packages: jaeger-bio 2024-04-08T20:42:24,178 Created temporary directory: /tmp/pip-wheel-h1fx5qa_ 2024-04-08T20:42:24,178 Building wheel for jaeger-bio (setup.py): started 2024-04-08T20:42:24,179 Destination directory: /tmp/pip-wheel-h1fx5qa_ 2024-04-08T20:42:24,180 Running command python setup.py bdist_wheel 2024-04-08T20:42:25,482 running bdist_wheel 2024-04-08T20:42:25,583 running build 2024-04-08T20:42:25,584 running build_py 2024-04-08T20:42:25,613 creating build 2024-04-08T20:42:25,614 creating build/lib 2024-04-08T20:42:25,615 creating build/lib/jaegeraa 2024-04-08T20:42:25,616 copying src/jaegeraa/postprocessing.py -> build/lib/jaegeraa 2024-04-08T20:42:25,619 copying src/jaegeraa/preprocessing.py -> build/lib/jaegeraa 2024-04-08T20:42:25,622 copying src/jaegeraa/__init__.py -> build/lib/jaegeraa 2024-04-08T20:42:25,624 copying src/jaegeraa/utils.py -> build/lib/jaegeraa 2024-04-08T20:42:25,626 copying src/jaegeraa/lib.py -> build/lib/jaegeraa 2024-04-08T20:42:25,629 creating build/lib/jaegeraa/nnlib 2024-04-08T20:42:25,630 copying src/jaegeraa/nnlib/cmodel.py -> build/lib/jaegeraa/nnlib 2024-04-08T20:42:25,633 copying src/jaegeraa/nnlib/__init__.py -> build/lib/jaegeraa/nnlib 2024-04-08T20:42:25,635 copying src/jaegeraa/nnlib/layers.py -> build/lib/jaegeraa/nnlib 2024-04-08T20:42:25,639 creating build/lib/jaegeraa/data 2024-04-08T20:42:25,639 copying src/jaegeraa/data/__init__.py -> build/lib/jaegeraa/data 2024-04-08T20:42:25,642 creating build/lib/jaegeraa/testing 2024-04-08T20:42:25,643 copying src/jaegeraa/testing/__init__.py -> build/lib/jaegeraa/testing 2024-04-08T20:42:25,650 copying src/jaegeraa/data/LR_ood_5_class.h5 -> build/lib/jaegeraa/data 2024-04-08T20:42:25,652 copying src/jaegeraa/data/LR_ood_3_class.h5 -> build/lib/jaegeraa/data 2024-04-08T20:42:25,654 copying src/jaegeraa/data/simple_amino_res_256_10_5_class.h5 -> build/lib/jaegeraa/data 2024-04-08T20:42:26,472 copying src/jaegeraa/data/simple_amino_res_256_10_3_class.h5 -> build/lib/jaegeraa/data 2024-04-08T20:42:27,344 copying src/jaegeraa/data/WRes_1024.h5 -> build/lib/jaegeraa/data 2024-04-08T20:42:27,448 copying src/jaegeraa/data/config.json -> build/lib/jaegeraa/data 2024-04-08T20:42:27,450 copying src/jaegeraa/data/batch_std.npy -> build/lib/jaegeraa/data 2024-04-08T20:42:27,452 copying src/jaegeraa/data/batch_means.npy -> build/lib/jaegeraa/data 2024-04-08T20:42:27,455 copying src/jaegeraa/data/LR_ood_4_class_default.pkl -> build/lib/jaegeraa/data 2024-04-08T20:42:27,459 running build_scripts 2024-04-08T20:42:27,460 creating build/scripts-3.11 2024-04-08T20:42:27,461 copying and adjusting bin/Jaeger -> build/scripts-3.11 2024-04-08T20:42:27,464 copying and adjusting bin/Jaeger_parallel -> build/scripts-3.11 2024-04-08T20:42:27,466 changing mode of build/scripts-3.11/Jaeger from 644 to 755 2024-04-08T20:42:27,467 changing mode of build/scripts-3.11/Jaeger_parallel from 644 to 755 2024-04-08T20:42:27,493 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-04-08T20:42:27,494 !! 2024-04-08T20:42:27,496 ******************************************************************************** 2024-04-08T20:42:27,496 Please avoid running ``setup.py`` directly. 2024-04-08T20:42:27,497 Instead, use pypa/build, pypa/installer or other 2024-04-08T20:42:27,497 standards-based tools. 2024-04-08T20:42:27,498 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-04-08T20:42:27,499 ******************************************************************************** 2024-04-08T20:42:27,500 !! 2024-04-08T20:42:27,500 self.initialize_options() 2024-04-08T20:42:27,520 installing to build/bdist.linux-armv7l/wheel 2024-04-08T20:42:27,521 running install 2024-04-08T20:42:27,558 running install_lib 2024-04-08T20:42:27,600 creating build/bdist.linux-armv7l 2024-04-08T20:42:27,601 creating build/bdist.linux-armv7l/wheel 2024-04-08T20:42:27,604 creating build/bdist.linux-armv7l/wheel/jaegeraa 2024-04-08T20:42:27,606 creating build/bdist.linux-armv7l/wheel/jaegeraa/nnlib 2024-04-08T20:42:27,608 copying build/lib/jaegeraa/nnlib/cmodel.py -> build/bdist.linux-armv7l/wheel/jaegeraa/nnlib 2024-04-08T20:42:27,611 copying build/lib/jaegeraa/nnlib/__init__.py -> build/bdist.linux-armv7l/wheel/jaegeraa/nnlib 2024-04-08T20:42:27,613 copying build/lib/jaegeraa/nnlib/layers.py -> build/bdist.linux-armv7l/wheel/jaegeraa/nnlib 2024-04-08T20:42:27,617 copying build/lib/jaegeraa/postprocessing.py -> build/bdist.linux-armv7l/wheel/jaegeraa 2024-04-08T20:42:27,621 copying build/lib/jaegeraa/preprocessing.py -> build/bdist.linux-armv7l/wheel/jaegeraa 2024-04-08T20:42:27,624 copying build/lib/jaegeraa/__init__.py -> build/bdist.linux-armv7l/wheel/jaegeraa 2024-04-08T20:42:27,627 copying build/lib/jaegeraa/utils.py -> build/bdist.linux-armv7l/wheel/jaegeraa 2024-04-08T20:42:27,631 creating build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-08T20:42:27,632 copying build/lib/jaegeraa/data/config.json -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-08T20:42:27,635 copying build/lib/jaegeraa/data/LR_ood_5_class.h5 -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-08T20:42:27,637 copying build/lib/jaegeraa/data/__init__.py -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-08T20:42:27,639 copying build/lib/jaegeraa/data/LR_ood_3_class.h5 -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-08T20:42:27,641 copying build/lib/jaegeraa/data/simple_amino_res_256_10_5_class.h5 -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-08T20:42:28,183 copying build/lib/jaegeraa/data/batch_std.npy -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-08T20:42:28,186 copying build/lib/jaegeraa/data/simple_amino_res_256_10_3_class.h5 -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-08T20:42:28,977 copying build/lib/jaegeraa/data/WRes_1024.h5 -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-08T20:42:29,114 copying build/lib/jaegeraa/data/batch_means.npy -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-08T20:42:29,116 copying build/lib/jaegeraa/data/LR_ood_4_class_default.pkl -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-08T20:42:29,118 copying build/lib/jaegeraa/lib.py -> build/bdist.linux-armv7l/wheel/jaegeraa 2024-04-08T20:42:29,121 creating build/bdist.linux-armv7l/wheel/jaegeraa/testing 2024-04-08T20:42:29,123 copying build/lib/jaegeraa/testing/__init__.py -> build/bdist.linux-armv7l/wheel/jaegeraa/testing 2024-04-08T20:42:29,124 running install_data 2024-04-08T20:42:29,149 creating build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.data 2024-04-08T20:42:29,150 creating build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.data/data 2024-04-08T20:42:29,152 copying LICENSE -> build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.data/data/. 2024-04-08T20:42:29,154 copying README.md -> build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.data/data/. 2024-04-08T20:42:29,157 copying misc/image-1.png -> build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.data/data/. 2024-04-08T20:42:29,164 copying misc/image.png -> build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.data/data/. 2024-04-08T20:42:29,167 copying test/bin.460.fna -> build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.data/data/. 2024-04-08T20:42:29,173 running install_egg_info 2024-04-08T20:42:29,235 running egg_info 2024-04-08T20:42:29,261 writing src/jaeger_bio.egg-info/PKG-INFO 2024-04-08T20:42:29,265 writing dependency_links to src/jaeger_bio.egg-info/dependency_links.txt 2024-04-08T20:42:29,268 writing requirements to src/jaeger_bio.egg-info/requires.txt 2024-04-08T20:42:29,269 writing top-level names to src/jaeger_bio.egg-info/top_level.txt 2024-04-08T20:42:29,302 reading manifest file 'src/jaeger_bio.egg-info/SOURCES.txt' 2024-04-08T20:42:29,305 adding license file 'LICENSE' 2024-04-08T20:42:29,307 writing manifest file 'src/jaeger_bio.egg-info/SOURCES.txt' 2024-04-08T20:42:29,310 Copying src/jaeger_bio.egg-info to build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25-py3.11.egg-info 2024-04-08T20:42:29,322 running install_scripts 2024-04-08T20:42:29,324 creating build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.data/scripts 2024-04-08T20:42:29,325 copying build/scripts-3.11/Jaeger_parallel -> build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.data/scripts 2024-04-08T20:42:29,328 copying build/scripts-3.11/Jaeger -> build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.data/scripts 2024-04-08T20:42:29,331 changing mode of build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.data/scripts/Jaeger_parallel to 755 2024-04-08T20:42:29,332 changing mode of build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.data/scripts/Jaeger to 755 2024-04-08T20:42:29,354 creating build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.25.dist-info/WHEEL 2024-04-08T20:42:29,356 creating '/tmp/pip-wheel-h1fx5qa_/jaeger_bio-1.1.25-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-08T20:42:29,358 adding 'jaeger_bio-1.1.25.data/data/LICENSE' 2024-04-08T20:42:29,361 adding 'jaeger_bio-1.1.25.data/data/README.md' 2024-04-08T20:42:29,472 adding 'jaeger_bio-1.1.25.data/data/bin.460.fna' 2024-04-08T20:42:29,496 adding 'jaeger_bio-1.1.25.data/data/image-1.png' 2024-04-08T20:42:29,501 adding 'jaeger_bio-1.1.25.data/data/image.png' 2024-04-08T20:42:29,504 adding 'jaeger_bio-1.1.25.data/scripts/Jaeger' 2024-04-08T20:42:29,506 adding 'jaeger_bio-1.1.25.data/scripts/Jaeger_parallel' 2024-04-08T20:42:29,509 adding 'jaegeraa/__init__.py' 2024-04-08T20:42:29,511 adding 'jaegeraa/lib.py' 2024-04-08T20:42:29,514 adding 'jaegeraa/postprocessing.py' 2024-04-08T20:42:29,516 adding 'jaegeraa/preprocessing.py' 2024-04-08T20:42:29,518 adding 'jaegeraa/utils.py' 2024-04-08T20:42:29,521 adding 'jaegeraa/data/LR_ood_3_class.h5' 2024-04-08T20:42:29,522 adding 'jaegeraa/data/LR_ood_4_class_default.pkl' 2024-04-08T20:42:29,524 adding 'jaegeraa/data/LR_ood_5_class.h5' 2024-04-08T20:42:30,105 adding 'jaegeraa/data/WRes_1024.h5' 2024-04-08T20:42:30,131 adding 'jaegeraa/data/__init__.py' 2024-04-08T20:42:30,133 adding 'jaegeraa/data/batch_means.npy' 2024-04-08T20:42:30,134 adding 'jaegeraa/data/batch_std.npy' 2024-04-08T20:42:30,136 adding 'jaegeraa/data/config.json' 2024-04-08T20:42:32,540 adding 'jaegeraa/data/simple_amino_res_256_10_3_class.h5' 2024-04-08T20:42:35,044 adding 'jaegeraa/data/simple_amino_res_256_10_5_class.h5' 2024-04-08T20:42:35,145 adding 'jaegeraa/nnlib/__init__.py' 2024-04-08T20:42:35,147 adding 'jaegeraa/nnlib/cmodel.py' 2024-04-08T20:42:35,150 adding 'jaegeraa/nnlib/layers.py' 2024-04-08T20:42:35,152 adding 'jaegeraa/testing/__init__.py' 2024-04-08T20:42:35,154 adding 'jaeger_bio-1.1.25.dist-info/LICENSE' 2024-04-08T20:42:35,156 adding 'jaeger_bio-1.1.25.dist-info/METADATA' 2024-04-08T20:42:35,158 adding 'jaeger_bio-1.1.25.dist-info/WHEEL' 2024-04-08T20:42:35,159 adding 'jaeger_bio-1.1.25.dist-info/top_level.txt' 2024-04-08T20:42:35,161 adding 'jaeger_bio-1.1.25.dist-info/RECORD' 2024-04-08T20:42:36,322 removing build/bdist.linux-armv7l/wheel 2024-04-08T20:42:36,482 Building wheel for jaeger-bio (setup.py): finished with status 'done' 2024-04-08T20:42:36,814 Created wheel for jaeger-bio: filename=jaeger_bio-1.1.25-py3-none-any.whl size=33433126 sha256=89c07dc80715fa98804041e682fe53ce61ae6082092c67023b5efc8dfd76e4e3 2024-04-08T20:42:36,815 Stored in directory: /tmp/pip-ephem-wheel-cache-emkz4z5b/wheels/4b/54/c7/c4f2b58ab21767a8f24cd6ddd3256c14a4e6897b937d305994 2024-04-08T20:42:36,840 Successfully built jaeger-bio 2024-04-08T20:42:38,617 Removed build tracker: '/tmp/pip-build-tracker-janyef10'