2024-04-09T16:01:25,701 Created temporary directory: /tmp/pip-build-tracker-e8nu_6lc 2024-04-09T16:01:25,702 Initialized build tracking at /tmp/pip-build-tracker-e8nu_6lc 2024-04-09T16:01:25,703 Created build tracker: /tmp/pip-build-tracker-e8nu_6lc 2024-04-09T16:01:25,703 Entered build tracker: /tmp/pip-build-tracker-e8nu_6lc 2024-04-09T16:01:25,704 Created temporary directory: /tmp/pip-wheel-yjgjr6nc 2024-04-09T16:01:25,707 Created temporary directory: /tmp/pip-ephem-wheel-cache-vb3djw_a 2024-04-09T16:01:25,729 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-09T16:01:25,733 2 location(s) to search for versions of jaeger-bio: 2024-04-09T16:01:25,733 * https://pypi.org/simple/jaeger-bio/ 2024-04-09T16:01:25,733 * https://www.piwheels.org/simple/jaeger-bio/ 2024-04-09T16:01:25,733 Fetching project page and analyzing links: https://pypi.org/simple/jaeger-bio/ 2024-04-09T16:01:25,734 Getting page https://pypi.org/simple/jaeger-bio/ 2024-04-09T16:01:25,736 Found index url https://pypi.org/simple/ 2024-04-09T16:01:25,945 Fetched page https://pypi.org/simple/jaeger-bio/ as application/vnd.pypi.simple.v1+json 2024-04-09T16:01:25,947 Skipping link: No binaries permitted for jaeger-bio: https://files.pythonhosted.org/packages/fc/1d/e19229335e7fcef34753dcc33873ff17c0aeccbeb44116d68f217c491895/jaeger_bio-1.1.24-py3-none-any.whl (from https://pypi.org/simple/jaeger-bio/) 2024-04-09T16:01:25,948 Found link https://files.pythonhosted.org/packages/62/99/4af4cebace227b020dc804b3cfeeef28221de33068a0f69baa58cddb5eef/jaeger-bio-1.1.25.tar.gz (from https://pypi.org/simple/jaeger-bio/), version: 1.1.25 2024-04-09T16:01:25,949 Skipping link: No binaries permitted for jaeger-bio: https://files.pythonhosted.org/packages/16/cb/f44263cf580c8b996a32d861a531dd29a40660093a20b8416b748c26defd/jaeger_bio-1.1.25-py3-none-any.whl (from https://pypi.org/simple/jaeger-bio/) 2024-04-09T16:01:25,949 Found link https://files.pythonhosted.org/packages/5f/c8/92c096ab11949e0cb287f418cd72ccd1f30cc55be2eddfff3348367de3c0/jaeger-bio-1.1.26.tar.gz (from https://pypi.org/simple/jaeger-bio/), version: 1.1.26 2024-04-09T16:01:25,950 Skipping link: No binaries permitted for jaeger-bio: https://files.pythonhosted.org/packages/c6/cb/25c7ed6abeb27e7de922a0744204b57061798d5bbe9d1e0d3c3f90f3b462/jaeger_bio-1.1.26-py3-none-any.whl (from https://pypi.org/simple/jaeger-bio/) 2024-04-09T16:01:25,951 Found link https://files.pythonhosted.org/packages/76/a9/4e2aec7efcbb1eee5e3ef707cd1d5c31cb6f188e288a2b3fa94e5a86a5eb/jaeger-bio-1.1.251.tar.gz (from https://pypi.org/simple/jaeger-bio/), version: 1.1.251 2024-04-09T16:01:25,951 Fetching project page and analyzing links: https://www.piwheels.org/simple/jaeger-bio/ 2024-04-09T16:01:25,952 Getting page https://www.piwheels.org/simple/jaeger-bio/ 2024-04-09T16:01:25,953 Found index url https://www.piwheels.org/simple/ 2024-04-09T16:01:26,120 Fetched page https://www.piwheels.org/simple/jaeger-bio/ as text/html 2024-04-09T16:01:26,122 Skipping link: No binaries permitted for jaeger-bio: https://www.piwheels.org/simple/jaeger-bio/jaeger_bio-1.1.251-py3-none-any.whl#sha256=dc10430cfffd414e7bcb69f82722260a07490119668bd06aaedd907e7832b054 (from https://www.piwheels.org/simple/jaeger-bio/) 2024-04-09T16:01:26,123 Skipping link: No binaries permitted for jaeger-bio: https://www.piwheels.org/simple/jaeger-bio/jaeger_bio-1.1.25-py3-none-any.whl#sha256=89c07dc80715fa98804041e682fe53ce61ae6082092c67023b5efc8dfd76e4e3 (from https://www.piwheels.org/simple/jaeger-bio/) 2024-04-09T16:01:26,123 Skipping link: not a file: https://www.piwheels.org/simple/jaeger-bio/ 2024-04-09T16:01:26,124 Skipping link: not a file: https://pypi.org/simple/jaeger-bio/ 2024-04-09T16:01:26,143 Given no hashes to check 1 links for project 'jaeger-bio': discarding no candidates 2024-04-09T16:01:26,160 Collecting jaeger-bio==1.1.26 2024-04-09T16:01:26,163 Created temporary directory: /tmp/pip-unpack-rmdxvpxx 2024-04-09T16:01:26,381 Downloading jaeger-bio-1.1.26.tar.gz (33.2 MB) 2024-04-09T16:01:34,973 Added jaeger-bio==1.1.26 from https://files.pythonhosted.org/packages/5f/c8/92c096ab11949e0cb287f418cd72ccd1f30cc55be2eddfff3348367de3c0/jaeger-bio-1.1.26.tar.gz to build tracker '/tmp/pip-build-tracker-e8nu_6lc' 2024-04-09T16:01:34,975 Running setup.py (path:/tmp/pip-wheel-yjgjr6nc/jaeger-bio_3ac72b587bf44dd389f76b20549f5e51/setup.py) egg_info for package jaeger-bio 2024-04-09T16:01:34,977 Created temporary directory: /tmp/pip-pip-egg-info-ujgasoy9 2024-04-09T16:01:34,977 Preparing metadata (setup.py): started 2024-04-09T16:01:34,978 Running command python setup.py egg_info 2024-04-09T16:01:36,092 running egg_info 2024-04-09T16:01:36,093 creating /tmp/pip-pip-egg-info-ujgasoy9/jaeger_bio.egg-info 2024-04-09T16:01:36,117 writing /tmp/pip-pip-egg-info-ujgasoy9/jaeger_bio.egg-info/PKG-INFO 2024-04-09T16:01:36,122 writing dependency_links to /tmp/pip-pip-egg-info-ujgasoy9/jaeger_bio.egg-info/dependency_links.txt 2024-04-09T16:01:36,124 writing requirements to /tmp/pip-pip-egg-info-ujgasoy9/jaeger_bio.egg-info/requires.txt 2024-04-09T16:01:36,125 writing top-level names to /tmp/pip-pip-egg-info-ujgasoy9/jaeger_bio.egg-info/top_level.txt 2024-04-09T16:01:36,127 writing manifest file '/tmp/pip-pip-egg-info-ujgasoy9/jaeger_bio.egg-info/SOURCES.txt' 2024-04-09T16:01:36,237 reading manifest file '/tmp/pip-pip-egg-info-ujgasoy9/jaeger_bio.egg-info/SOURCES.txt' 2024-04-09T16:01:36,239 adding license file 'LICENSE' 2024-04-09T16:01:36,241 writing manifest file '/tmp/pip-pip-egg-info-ujgasoy9/jaeger_bio.egg-info/SOURCES.txt' 2024-04-09T16:01:36,348 Preparing metadata (setup.py): finished with status 'done' 2024-04-09T16:01:36,354 Source in /tmp/pip-wheel-yjgjr6nc/jaeger-bio_3ac72b587bf44dd389f76b20549f5e51 has version 1.1.26, which satisfies requirement jaeger-bio==1.1.26 from https://files.pythonhosted.org/packages/5f/c8/92c096ab11949e0cb287f418cd72ccd1f30cc55be2eddfff3348367de3c0/jaeger-bio-1.1.26.tar.gz 2024-04-09T16:01:36,355 Removed jaeger-bio==1.1.26 from https://files.pythonhosted.org/packages/5f/c8/92c096ab11949e0cb287f418cd72ccd1f30cc55be2eddfff3348367de3c0/jaeger-bio-1.1.26.tar.gz from build tracker '/tmp/pip-build-tracker-e8nu_6lc' 2024-04-09T16:01:36,361 Created temporary directory: /tmp/pip-unpack-6ejj_m9q 2024-04-09T16:01:36,362 Created temporary directory: /tmp/pip-unpack-rda5xwi5 2024-04-09T16:01:36,383 Building wheels for collected packages: jaeger-bio 2024-04-09T16:01:36,387 Created temporary directory: /tmp/pip-wheel-yt15bvou 2024-04-09T16:01:36,387 Building wheel for jaeger-bio (setup.py): started 2024-04-09T16:01:36,389 Destination directory: /tmp/pip-wheel-yt15bvou 2024-04-09T16:01:36,390 Running command python setup.py bdist_wheel 2024-04-09T16:01:37,436 running bdist_wheel 2024-04-09T16:01:37,533 running build 2024-04-09T16:01:37,534 running build_py 2024-04-09T16:01:37,562 creating build 2024-04-09T16:01:37,562 creating build/lib 2024-04-09T16:01:37,563 creating build/lib/jaegeraa 2024-04-09T16:01:37,564 copying src/jaegeraa/postprocessing.py -> build/lib/jaegeraa 2024-04-09T16:01:37,568 copying src/jaegeraa/__init__.py -> build/lib/jaegeraa 2024-04-09T16:01:37,570 copying src/jaegeraa/lib.py -> build/lib/jaegeraa 2024-04-09T16:01:37,572 copying src/jaegeraa/preprocessing.py -> build/lib/jaegeraa 2024-04-09T16:01:37,575 copying src/jaegeraa/utils.py -> build/lib/jaegeraa 2024-04-09T16:01:37,578 creating build/lib/jaegeraa/data 2024-04-09T16:01:37,579 copying src/jaegeraa/data/__init__.py -> build/lib/jaegeraa/data 2024-04-09T16:01:37,582 creating build/lib/jaegeraa/nnlib 2024-04-09T16:01:37,582 copying src/jaegeraa/nnlib/__init__.py -> build/lib/jaegeraa/nnlib 2024-04-09T16:01:37,584 copying src/jaegeraa/nnlib/layers.py -> build/lib/jaegeraa/nnlib 2024-04-09T16:01:37,587 copying src/jaegeraa/nnlib/cmodel.py -> build/lib/jaegeraa/nnlib 2024-04-09T16:01:37,590 creating build/lib/jaegeraa/testing 2024-04-09T16:01:37,591 copying src/jaegeraa/testing/__init__.py -> build/lib/jaegeraa/testing 2024-04-09T16:01:37,598 copying src/jaegeraa/data/simple_amino_res_256_10_3_class.h5 -> build/lib/jaegeraa/data 2024-04-09T16:01:38,166 copying src/jaegeraa/data/LR_ood_5_class.h5 -> build/lib/jaegeraa/data 2024-04-09T16:01:38,169 copying src/jaegeraa/data/simple_amino_res_256_10_5_class.h5 -> build/lib/jaegeraa/data 2024-04-09T16:01:39,102 copying src/jaegeraa/data/WRes_1024.h5 -> build/lib/jaegeraa/data 2024-04-09T16:01:39,183 copying src/jaegeraa/data/LR_ood_3_class.h5 -> build/lib/jaegeraa/data 2024-04-09T16:01:39,186 copying src/jaegeraa/data/config.json -> build/lib/jaegeraa/data 2024-04-09T16:01:39,189 copying src/jaegeraa/data/batch_std.npy -> build/lib/jaegeraa/data 2024-04-09T16:01:39,191 copying src/jaegeraa/data/batch_means.npy -> build/lib/jaegeraa/data 2024-04-09T16:01:39,194 copying src/jaegeraa/data/LR_ood_4_class_default.pkl -> build/lib/jaegeraa/data 2024-04-09T16:01:39,198 running build_scripts 2024-04-09T16:01:39,198 creating build/scripts-3.11 2024-04-09T16:01:39,199 copying and adjusting bin/Jaeger -> build/scripts-3.11 2024-04-09T16:01:39,203 copying and adjusting bin/Jaeger_parallel -> build/scripts-3.11 2024-04-09T16:01:39,205 changing mode of build/scripts-3.11/Jaeger from 644 to 755 2024-04-09T16:01:39,206 changing mode of build/scripts-3.11/Jaeger_parallel from 644 to 755 2024-04-09T16:01:39,232 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-04-09T16:01:39,233 !! 2024-04-09T16:01:39,234 ******************************************************************************** 2024-04-09T16:01:39,235 Please avoid running ``setup.py`` directly. 2024-04-09T16:01:39,235 Instead, use pypa/build, pypa/installer or other 2024-04-09T16:01:39,236 standards-based tools. 2024-04-09T16:01:39,237 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-04-09T16:01:39,238 ******************************************************************************** 2024-04-09T16:01:39,239 !! 2024-04-09T16:01:39,239 self.initialize_options() 2024-04-09T16:01:39,259 installing to build/bdist.linux-armv7l/wheel 2024-04-09T16:01:39,260 running install 2024-04-09T16:01:39,283 running install_lib 2024-04-09T16:01:39,310 creating build/bdist.linux-armv7l 2024-04-09T16:01:39,311 creating build/bdist.linux-armv7l/wheel 2024-04-09T16:01:39,313 creating build/bdist.linux-armv7l/wheel/jaegeraa 2024-04-09T16:01:39,314 copying build/lib/jaegeraa/postprocessing.py -> build/bdist.linux-armv7l/wheel/jaegeraa 2024-04-09T16:01:39,318 copying build/lib/jaegeraa/__init__.py -> build/bdist.linux-armv7l/wheel/jaegeraa 2024-04-09T16:01:39,320 creating build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-09T16:01:39,321 copying build/lib/jaegeraa/data/__init__.py -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-09T16:01:39,323 copying build/lib/jaegeraa/data/batch_std.npy -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-09T16:01:39,324 copying build/lib/jaegeraa/data/config.json -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-09T16:01:39,326 copying build/lib/jaegeraa/data/simple_amino_res_256_10_3_class.h5 -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-09T16:01:39,874 copying build/lib/jaegeraa/data/LR_ood_5_class.h5 -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-09T16:01:39,876 copying build/lib/jaegeraa/data/simple_amino_res_256_10_5_class.h5 -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-09T16:01:40,860 copying build/lib/jaegeraa/data/WRes_1024.h5 -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-09T16:01:40,966 copying build/lib/jaegeraa/data/batch_means.npy -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-09T16:01:40,968 copying build/lib/jaegeraa/data/LR_ood_3_class.h5 -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-09T16:01:40,971 copying build/lib/jaegeraa/data/LR_ood_4_class_default.pkl -> build/bdist.linux-armv7l/wheel/jaegeraa/data 2024-04-09T16:01:40,974 creating build/bdist.linux-armv7l/wheel/jaegeraa/nnlib 2024-04-09T16:01:40,975 copying build/lib/jaegeraa/nnlib/__init__.py -> build/bdist.linux-armv7l/wheel/jaegeraa/nnlib 2024-04-09T16:01:40,978 copying build/lib/jaegeraa/nnlib/layers.py -> build/bdist.linux-armv7l/wheel/jaegeraa/nnlib 2024-04-09T16:01:40,981 copying build/lib/jaegeraa/nnlib/cmodel.py -> build/bdist.linux-armv7l/wheel/jaegeraa/nnlib 2024-04-09T16:01:40,984 creating build/bdist.linux-armv7l/wheel/jaegeraa/testing 2024-04-09T16:01:40,985 copying build/lib/jaegeraa/testing/__init__.py -> build/bdist.linux-armv7l/wheel/jaegeraa/testing 2024-04-09T16:01:40,988 copying build/lib/jaegeraa/lib.py -> build/bdist.linux-armv7l/wheel/jaegeraa 2024-04-09T16:01:40,990 copying build/lib/jaegeraa/preprocessing.py -> build/bdist.linux-armv7l/wheel/jaegeraa 2024-04-09T16:01:40,993 copying build/lib/jaegeraa/utils.py -> build/bdist.linux-armv7l/wheel/jaegeraa 2024-04-09T16:01:40,995 running install_data 2024-04-09T16:01:41,019 creating build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.26.data 2024-04-09T16:01:41,020 creating build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.26.data/data 2024-04-09T16:01:41,021 copying LICENSE -> build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.26.data/data/. 2024-04-09T16:01:41,023 copying README.md -> build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.26.data/data/. 2024-04-09T16:01:41,025 running install_egg_info 2024-04-09T16:01:41,087 running egg_info 2024-04-09T16:01:41,111 writing src/jaeger_bio.egg-info/PKG-INFO 2024-04-09T16:01:41,115 writing dependency_links to src/jaeger_bio.egg-info/dependency_links.txt 2024-04-09T16:01:41,117 writing requirements to src/jaeger_bio.egg-info/requires.txt 2024-04-09T16:01:41,118 writing top-level names to src/jaeger_bio.egg-info/top_level.txt 2024-04-09T16:01:41,150 reading manifest file 'src/jaeger_bio.egg-info/SOURCES.txt' 2024-04-09T16:01:41,152 adding license file 'LICENSE' 2024-04-09T16:01:41,155 writing manifest file 'src/jaeger_bio.egg-info/SOURCES.txt' 2024-04-09T16:01:41,156 Copying src/jaeger_bio.egg-info to build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.26-py3.11.egg-info 2024-04-09T16:01:41,166 running install_scripts 2024-04-09T16:01:41,167 creating build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.26.data/scripts 2024-04-09T16:01:41,168 copying build/scripts-3.11/Jaeger_parallel -> build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.26.data/scripts 2024-04-09T16:01:41,171 copying build/scripts-3.11/Jaeger -> build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.26.data/scripts 2024-04-09T16:01:41,173 changing mode of build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.26.data/scripts/Jaeger_parallel to 755 2024-04-09T16:01:41,174 changing mode of build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.26.data/scripts/Jaeger to 755 2024-04-09T16:01:41,193 creating build/bdist.linux-armv7l/wheel/jaeger_bio-1.1.26.dist-info/WHEEL 2024-04-09T16:01:41,195 creating '/tmp/pip-wheel-yt15bvou/jaeger_bio-1.1.26-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-09T16:01:41,198 adding 'jaeger_bio-1.1.26.data/data/LICENSE' 2024-04-09T16:01:41,201 adding 'jaeger_bio-1.1.26.data/data/README.md' 2024-04-09T16:01:41,204 adding 'jaeger_bio-1.1.26.data/scripts/Jaeger' 2024-04-09T16:01:41,206 adding 'jaeger_bio-1.1.26.data/scripts/Jaeger_parallel' 2024-04-09T16:01:41,209 adding 'jaegeraa/__init__.py' 2024-04-09T16:01:41,210 adding 'jaegeraa/lib.py' 2024-04-09T16:01:41,213 adding 'jaegeraa/postprocessing.py' 2024-04-09T16:01:41,215 adding 'jaegeraa/preprocessing.py' 2024-04-09T16:01:41,217 adding 'jaegeraa/utils.py' 2024-04-09T16:01:41,219 adding 'jaegeraa/data/LR_ood_3_class.h5' 2024-04-09T16:01:41,221 adding 'jaegeraa/data/LR_ood_4_class_default.pkl' 2024-04-09T16:01:41,222 adding 'jaegeraa/data/LR_ood_5_class.h5' 2024-04-09T16:01:41,804 adding 'jaegeraa/data/WRes_1024.h5' 2024-04-09T16:01:41,831 adding 'jaegeraa/data/__init__.py' 2024-04-09T16:01:41,832 adding 'jaegeraa/data/batch_means.npy' 2024-04-09T16:01:41,834 adding 'jaegeraa/data/batch_std.npy' 2024-04-09T16:01:41,835 adding 'jaegeraa/data/config.json' 2024-04-09T16:01:44,241 adding 'jaegeraa/data/simple_amino_res_256_10_3_class.h5' 2024-04-09T16:01:46,740 adding 'jaegeraa/data/simple_amino_res_256_10_5_class.h5' 2024-04-09T16:01:46,840 adding 'jaegeraa/nnlib/__init__.py' 2024-04-09T16:01:46,842 adding 'jaegeraa/nnlib/cmodel.py' 2024-04-09T16:01:46,845 adding 'jaegeraa/nnlib/layers.py' 2024-04-09T16:01:46,846 adding 'jaegeraa/testing/__init__.py' 2024-04-09T16:01:46,847 adding 'jaeger_bio-1.1.26.dist-info/LICENSE' 2024-04-09T16:01:46,850 adding 'jaeger_bio-1.1.26.dist-info/METADATA' 2024-04-09T16:01:46,851 adding 'jaeger_bio-1.1.26.dist-info/WHEEL' 2024-04-09T16:01:46,852 adding 'jaeger_bio-1.1.26.dist-info/top_level.txt' 2024-04-09T16:01:46,853 adding 'jaeger_bio-1.1.26.dist-info/RECORD' 2024-04-09T16:01:48,152 removing build/bdist.linux-armv7l/wheel 2024-04-09T16:01:48,293 Building wheel for jaeger-bio (setup.py): finished with status 'done' 2024-04-09T16:01:48,621 Created wheel for jaeger-bio: filename=jaeger_bio-1.1.26-py3-none-any.whl size=33132383 sha256=d4108d549c8f98ef212f6402b23347fc7cd13e09f30f963ba29b13f36a74e35c 2024-04-09T16:01:48,622 Stored in directory: /tmp/pip-ephem-wheel-cache-vb3djw_a/wheels/d1/9c/2c/0609cb573e3a94ba41f8d091f8075e966f2403a5fc139eec99 2024-04-09T16:01:48,646 Successfully built jaeger-bio 2024-04-09T16:01:50,124 Removed build tracker: '/tmp/pip-build-tracker-e8nu_6lc'