2024-04-09T23:38:17,532 Created temporary directory: /tmp/pip-build-tracker-ekdnxlq1 2024-04-09T23:38:17,534 Initialized build tracking at /tmp/pip-build-tracker-ekdnxlq1 2024-04-09T23:38:17,535 Created build tracker: /tmp/pip-build-tracker-ekdnxlq1 2024-04-09T23:38:17,536 Entered build tracker: /tmp/pip-build-tracker-ekdnxlq1 2024-04-09T23:38:17,537 Created temporary directory: /tmp/pip-wheel-sb5of7d8 2024-04-09T23:38:17,540 Created temporary directory: /tmp/pip-ephem-wheel-cache-lu9yzdkc 2024-04-09T23:38:17,568 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-09T23:38:17,571 2 location(s) to search for versions of pybedtools: 2024-04-09T23:38:17,571 * https://pypi.org/simple/pybedtools/ 2024-04-09T23:38:17,571 * https://www.piwheels.org/simple/pybedtools/ 2024-04-09T23:38:17,572 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2024-04-09T23:38:17,573 Getting page https://pypi.org/simple/pybedtools/ 2024-04-09T23:38:17,575 Found index url https://pypi.org/simple/ 2024-04-09T23:38:17,790 Fetched page https://pypi.org/simple/pybedtools/ as application/vnd.pypi.simple.v1+json 2024-04-09T23:38:17,796 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2024-04-09T23:38:17,797 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2024-04-09T23:38:17,797 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2024-04-09T23:38:17,798 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5 2024-04-09T23:38:17,799 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2024-04-09T23:38:17,800 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2024-04-09T23:38:17,801 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6 2024-04-09T23:38:17,802 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2024-04-09T23:38:17,802 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2024-04-09T23:38:17,803 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2024-04-09T23:38:17,804 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2024-04-09T23:38:17,805 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2024-04-09T23:38:17,806 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2024-04-09T23:38:17,807 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2024-04-09T23:38:17,808 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2024-04-09T23:38:17,809 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2024-04-09T23:38:17,810 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2024-04-09T23:38:17,811 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2024-04-09T23:38:17,811 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2024-04-09T23:38:17,812 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2024-04-09T23:38:17,813 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2024-04-09T23:38:17,814 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2024-04-09T23:38:17,814 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2024-04-09T23:38:17,815 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2024-04-09T23:38:17,816 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2024-04-09T23:38:17,817 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2024-04-09T23:38:17,818 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2024-04-09T23:38:17,819 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2024-04-09T23:38:17,820 Found link https://files.pythonhosted.org/packages/58/e2/410bb188b47582e2fd2f7176173b7b7bf46e122bb17fb4422552f4a6c604/pybedtools-0.9.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.0 2024-04-09T23:38:17,821 Found link https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.1 2024-04-09T23:38:17,822 Found link https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.10.0 2024-04-09T23:38:17,823 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybedtools/ 2024-04-09T23:38:17,824 Getting page https://www.piwheels.org/simple/pybedtools/ 2024-04-09T23:38:17,825 Found index url https://www.piwheels.org/simple/ 2024-04-09T23:38:17,977 Fetched page https://www.piwheels.org/simple/pybedtools/ as text/html 2024-04-09T23:38:17,995 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aac4ce2ebe92db07c21f083906878a68f16480f350569fd0e6765abad7cc0212 (from https://www.piwheels.org/simple/pybedtools/) 2024-04-09T23:38:17,996 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aac4ce2ebe92db07c21f083906878a68f16480f350569fd0e6765abad7cc0212 (from https://www.piwheels.org/simple/pybedtools/) 2024-04-09T23:38:17,996 Skipping link: No binaries permitted for pybedtools: 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https://www.piwheels.org/simple/pybedtools/pybedtools-0.2.2.dev0-py3-none-any.whl#sha256=37efef7ea02a872e8d60cd34e5a36bd3e480eaccf7121bd8ac67647dd4550efc (from https://www.piwheels.org/simple/pybedtools/) 2024-04-09T23:38:18,048 Skipping link: not a file: https://www.piwheels.org/simple/pybedtools/ 2024-04-09T23:38:18,049 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2024-04-09T23:38:18,071 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2024-04-09T23:38:18,090 Collecting pybedtools==0.10.0 2024-04-09T23:38:18,093 Created temporary directory: /tmp/pip-unpack-2u2bgv1m 2024-04-09T23:38:18,312 Downloading pybedtools-0.10.0.tar.gz (12.6 MB) 2024-04-09T23:38:22,014 Added pybedtools==0.10.0 from https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz to build tracker '/tmp/pip-build-tracker-ekdnxlq1' 2024-04-09T23:38:22,016 Running setup.py (path:/tmp/pip-wheel-sb5of7d8/pybedtools_278b6dfd37414a63a70364dac3e02d00/setup.py) egg_info for package pybedtools 2024-04-09T23:38:22,017 Created temporary directory: /tmp/pip-pip-egg-info-2dvtw1ru 2024-04-09T23:38:22,017 Preparing metadata (setup.py): started 2024-04-09T23:38:22,018 Running command python setup.py egg_info 2024-04-09T23:38:22,760 /tmp/pip-wheel-sb5of7d8/pybedtools_278b6dfd37414a63a70364dac3e02d00/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2024-04-09T23:38:22,760 import pkg_resources 2024-04-09T23:38:23,047 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'language_level' 2024-04-09T23:38:23,048 warnings.warn(msg) 2024-04-09T23:38:23,222 running egg_info 2024-04-09T23:38:23,223 creating /tmp/pip-pip-egg-info-2dvtw1ru/pybedtools.egg-info 2024-04-09T23:38:23,248 writing /tmp/pip-pip-egg-info-2dvtw1ru/pybedtools.egg-info/PKG-INFO 2024-04-09T23:38:23,251 writing dependency_links to /tmp/pip-pip-egg-info-2dvtw1ru/pybedtools.egg-info/dependency_links.txt 2024-04-09T23:38:23,254 writing requirements to /tmp/pip-pip-egg-info-2dvtw1ru/pybedtools.egg-info/requires.txt 2024-04-09T23:38:23,255 writing top-level names to /tmp/pip-pip-egg-info-2dvtw1ru/pybedtools.egg-info/top_level.txt 2024-04-09T23:38:23,257 writing manifest file '/tmp/pip-pip-egg-info-2dvtw1ru/pybedtools.egg-info/SOURCES.txt' 2024-04-09T23:38:23,340 reading manifest file '/tmp/pip-pip-egg-info-2dvtw1ru/pybedtools.egg-info/SOURCES.txt' 2024-04-09T23:38:23,342 adding license file 'LICENSE.txt' 2024-04-09T23:38:23,346 writing manifest file '/tmp/pip-pip-egg-info-2dvtw1ru/pybedtools.egg-info/SOURCES.txt' 2024-04-09T23:38:23,461 Preparing metadata (setup.py): finished with status 'done' 2024-04-09T23:38:23,465 Source in /tmp/pip-wheel-sb5of7d8/pybedtools_278b6dfd37414a63a70364dac3e02d00 has version 0.10.0, which satisfies requirement pybedtools==0.10.0 from https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz 2024-04-09T23:38:23,466 Removed pybedtools==0.10.0 from https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz from build tracker '/tmp/pip-build-tracker-ekdnxlq1' 2024-04-09T23:38:23,471 Created temporary directory: /tmp/pip-unpack-qysxa8du 2024-04-09T23:38:23,472 Created temporary directory: /tmp/pip-unpack-ehfl9e71 2024-04-09T23:38:23,477 Building wheels for collected packages: pybedtools 2024-04-09T23:38:23,700 Created temporary directory: /tmp/pip-wheel-gyvt5zn2 2024-04-09T23:38:23,701 Building wheel for pybedtools (setup.py): started 2024-04-09T23:38:23,702 Destination directory: /tmp/pip-wheel-gyvt5zn2 2024-04-09T23:38:23,703 Running command python setup.py bdist_wheel 2024-04-09T23:38:24,408 /tmp/pip-wheel-sb5of7d8/pybedtools_278b6dfd37414a63a70364dac3e02d00/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2024-04-09T23:38:24,408 import pkg_resources 2024-04-09T23:38:24,684 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'language_level' 2024-04-09T23:38:24,685 warnings.warn(msg) 2024-04-09T23:38:24,839 running bdist_wheel 2024-04-09T23:38:24,864 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2024-04-09T23:38:24,890 running build 2024-04-09T23:38:24,891 running build_py 2024-04-09T23:38:24,921 creating build 2024-04-09T23:38:24,921 creating build/lib.linux-armv7l-cpython-311 2024-04-09T23:38:24,922 creating build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:24,924 copying pybedtools/parallel.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:24,927 copying pybedtools/settings.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:24,929 copying pybedtools/filenames.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:24,931 copying pybedtools/version.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:24,933 copying pybedtools/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:24,935 copying pybedtools/helpers.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:24,938 copying pybedtools/paths.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:24,940 copying pybedtools/logger.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:24,942 copying pybedtools/stats.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:24,945 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:24,950 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:24,957 creating build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,958 copying pybedtools/test/test_issues.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,962 copying pybedtools/test/test_pathlib.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,964 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,966 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,968 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,970 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,972 copying pybedtools/test/test_1.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,977 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,979 copying pybedtools/test/genomepy_integration.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,981 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,984 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,986 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,989 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2024-04-09T23:38:24,992 creating build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2024-04-09T23:38:24,993 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2024-04-09T23:38:24,996 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2024-04-09T23:38:24,999 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2024-04-09T23:38:25,001 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2024-04-09T23:38:25,003 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2024-04-09T23:38:25,006 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2024-04-09T23:38:25,007 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2024-04-09T23:38:25,011 creating build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,012 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,013 running egg_info 2024-04-09T23:38:25,046 creating pybedtools.egg-info 2024-04-09T23:38:25,076 writing pybedtools.egg-info/PKG-INFO 2024-04-09T23:38:25,081 writing dependency_links to pybedtools.egg-info/dependency_links.txt 2024-04-09T23:38:25,084 writing requirements to pybedtools.egg-info/requires.txt 2024-04-09T23:38:25,085 writing top-level names to pybedtools.egg-info/top_level.txt 2024-04-09T23:38:25,088 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2024-04-09T23:38:25,138 reading manifest file 'pybedtools.egg-info/SOURCES.txt' 2024-04-09T23:38:25,140 adding license file 'LICENSE.txt' 2024-04-09T23:38:25,145 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2024-04-09T23:38:25,147 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pybedtools.include' is absent from the `packages` configuration. 2024-04-09T23:38:25,148 !! 2024-04-09T23:38:25,149 ******************************************************************************** 2024-04-09T23:38:25,149 ############################ 2024-04-09T23:38:25,150 # Package would be ignored # 2024-04-09T23:38:25,150 ############################ 2024-04-09T23:38:25,151 Python recognizes 'pybedtools.include' as an importable package[^1], 2024-04-09T23:38:25,151 but it is absent from setuptools' `packages` configuration. 2024-04-09T23:38:25,152 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-09T23:38:25,152 package, please make sure that 'pybedtools.include' is explicitly added 2024-04-09T23:38:25,153 to the `packages` configuration field. 2024-04-09T23:38:25,154 Alternatively, you can also rely on setuptools' discovery methods 2024-04-09T23:38:25,155 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-09T23:38:25,155 instead of `find_packages(...)`/`find:`). 2024-04-09T23:38:25,156 You can read more about "package discovery" on setuptools documentation page: 2024-04-09T23:38:25,157 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-09T23:38:25,159 If you don't want 'pybedtools.include' to be distributed and are 2024-04-09T23:38:25,159 already explicitly excluding 'pybedtools.include' via 2024-04-09T23:38:25,160 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-09T23:38:25,161 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-09T23:38:25,161 combination with a more fine grained `package-data` configuration. 2024-04-09T23:38:25,163 You can read more about "package data files" on setuptools documentation page: 2024-04-09T23:38:25,164 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-09T23:38:25,166 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-09T23:38:25,167 even if it does not contain any `.py` files. 2024-04-09T23:38:25,168 On the other hand, currently there is no concept of package data 2024-04-09T23:38:25,169 directory, all directories are treated like packages. 2024-04-09T23:38:25,170 ******************************************************************************** 2024-04-09T23:38:25,172 !! 2024-04-09T23:38:25,173 check.warn(importable) 2024-04-09T23:38:25,174 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:25,175 copying pybedtools/cbedtools.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:25,217 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:25,219 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:25,223 copying pybedtools/featurefuncs.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:25,245 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:25,247 creating build/lib.linux-armv7l-cpython-311/pybedtools/include 2024-04-09T23:38:25,248 copying pybedtools/include/bedFile.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2024-04-09T23:38:25,251 copying pybedtools/include/fileType.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2024-04-09T23:38:25,253 copying pybedtools/include/gzstream.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2024-04-09T23:38:25,256 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,258 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,260 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,266 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,269 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,272 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,274 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,277 copying pybedtools/test/data/1000genomes-example.vcf.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,278 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,283 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,297 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,299 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,301 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,304 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,306 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,308 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,310 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,312 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,315 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,319 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,324 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,394 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,489 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,491 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,494 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,496 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,499 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,504 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,510 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,512 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,516 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,518 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,520 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,730 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,732 copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,734 copying pybedtools/test/data/a.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,736 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,738 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,740 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,742 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,746 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,750 copying pybedtools/test/data/genome.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,752 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,754 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,756 copying pybedtools/test/data/issue319.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,758 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,760 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,763 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,774 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,776 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,778 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,781 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,783 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,785 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,787 copying pybedtools/test/data/a.bed.gz.tbi -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,789 copying pybedtools/test/data/gdc.cram -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,790 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,794 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,796 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,798 copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,801 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,803 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,805 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,808 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,811 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,813 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,815 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,822 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,825 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,828 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,830 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,833 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,837 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,839 copying pybedtools/test/data/1000genomes-example.vcf.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,841 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,843 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,847 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,851 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,855 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,858 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,863 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,868 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,873 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,878 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,880 copying pybedtools/test/data/a.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,882 copying pybedtools/test/data/a.bed.gz.tbi -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,884 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,887 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,889 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,891 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,893 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,895 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,898 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,900 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,902 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:25,983 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,000 copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,003 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,005 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,008 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,011 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,013 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,015 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,018 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,020 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,023 copying pybedtools/test/data/gdc.cram -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,025 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,028 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,031 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,034 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,037 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,039 copying pybedtools/test/data/genome.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,042 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,051 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,053 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,056 copying pybedtools/test/data/issue319.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,059 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,066 copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,070 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,072 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,074 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,077 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,079 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,081 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,085 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,088 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,090 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,092 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,368 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,371 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,374 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,376 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,379 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,381 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,384 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,386 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,389 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,391 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,394 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,397 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,400 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,476 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,559 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2024-04-09T23:38:26,565 running build_ext 2024-04-09T23:38:26,574 building 'pybedtools.cbedtools' extension 2024-04-09T23:38:26,574 creating build/temp.linux-armv7l-cpython-311 2024-04-09T23:38:26,575 creating build/temp.linux-armv7l-cpython-311/pybedtools 2024-04-09T23:38:26,577 creating build/temp.linux-armv7l-cpython-311/pybedtools/include 2024-04-09T23:38:26,578 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/cbedtools.o 2024-04-09T23:38:30,344 pybedtools/cbedtools.cpp: In function ‘PyObject* __Pyx_PyInt_AndObjC(PyObject*, PyObject*, long int, int, int)’: 2024-04-09T23:38:30,345 pybedtools/cbedtools.cpp:26182:36: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 2024-04-09T23:38:30,346 26182 | if ((intval & PyLong_MASK) == intval) { 2024-04-09T23:38:30,346 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2024-04-09T23:39:05,016 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o 2024-04-09T23:39:13,327 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o 2024-04-09T23:39:15,033 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o 2024-04-09T23:39:17,124 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pybedtools/cbedtools.o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so 2024-04-09T23:39:17,566 building 'pybedtools.featurefuncs' extension 2024-04-09T23:39:17,567 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/featurefuncs.o 2024-04-09T23:39:35,020 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o 2024-04-09T23:39:43,412 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o 2024-04-09T23:39:45,132 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o 2024-04-09T23:39:46,943 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pybedtools/featurefuncs.o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o build/lib.linux-armv7l-cpython-311/pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so 2024-04-09T23:39:47,324 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-04-09T23:39:47,324 !! 2024-04-09T23:39:47,326 ******************************************************************************** 2024-04-09T23:39:47,326 Please avoid running ``setup.py`` directly. 2024-04-09T23:39:47,327 Instead, use pypa/build, pypa/installer or other 2024-04-09T23:39:47,327 standards-based tools. 2024-04-09T23:39:47,329 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-04-09T23:39:47,329 ******************************************************************************** 2024-04-09T23:39:47,331 !! 2024-04-09T23:39:47,331 self.initialize_options() 2024-04-09T23:39:47,352 installing to build/bdist.linux-armv7l/wheel 2024-04-09T23:39:47,353 running install 2024-04-09T23:39:47,376 running install_lib 2024-04-09T23:39:47,402 creating build/bdist.linux-armv7l 2024-04-09T23:39:47,402 creating build/bdist.linux-armv7l/wheel 2024-04-09T23:39:47,404 creating build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,405 copying build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.pyx -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,408 copying build/lib.linux-armv7l-cpython-311/pybedtools/featurefuncs.cpp -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,431 creating build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-09T23:39:47,432 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/bigwig.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-09T23:39:47,436 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/intersection_matrix.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-09T23:39:47,439 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-09T23:39:47,442 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/venn_maker.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-09T23:39:47,445 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/long_range_interaction.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-09T23:39:47,449 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/bigbed.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-09T23:39:47,451 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/plotting.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-09T23:39:47,456 copying build/lib.linux-armv7l-cpython-311/pybedtools/parallel.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,460 copying build/lib.linux-armv7l-cpython-311/pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,511 copying build/lib.linux-armv7l-cpython-311/pybedtools/settings.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,514 copying build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,653 copying build/lib.linux-armv7l-cpython-311/pybedtools/_Window.pyx -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,655 copying build/lib.linux-armv7l-cpython-311/pybedtools/filenames.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,657 copying build/lib.linux-armv7l-cpython-311/pybedtools/version.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,659 copying build/lib.linux-armv7l-cpython-311/pybedtools/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,661 copying build/lib.linux-armv7l-cpython-311/pybedtools/featurefuncs.pyx -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,664 copying build/lib.linux-armv7l-cpython-311/pybedtools/helpers.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,667 copying build/lib.linux-armv7l-cpython-311/pybedtools/paths.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,669 copying build/lib.linux-armv7l-cpython-311/pybedtools/logger.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,671 copying build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.cpp -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,725 copying build/lib.linux-armv7l-cpython-311/pybedtools/stats.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,727 copying build/lib.linux-armv7l-cpython-311/pybedtools/genome_registry.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:47,773 creating build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:47,774 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_issues.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:47,777 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_pathlib.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:47,779 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_contrib.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:47,781 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:47,783 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_gzip_support.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:47,785 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/regression_tests.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:47,786 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_1.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:47,791 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/tfuncs.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:47,793 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/genomepy_integration.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:47,795 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_iter.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:47,799 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_len_leak.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:47,804 creating build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:47,805 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:47,809 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.links.html -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,031 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,040 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/small.fastq -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,082 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.50.200.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,085 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/bedpe2.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,089 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/venn.b.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,092 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/1000genomes-example.vcf.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,097 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,136 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,154 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,156 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/vcf-stderr-test.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,159 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/hg38-problem.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,162 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/1000genomes-example.vcf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,165 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test.fa.fai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,168 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test_tsses.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,171 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/d.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,174 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,179 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,185 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,193 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/x.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,310 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/x.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,379 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,381 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test_peaks.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,384 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/reads.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,386 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/expand_test.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,389 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,395 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/issue319.out.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,405 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,409 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/venn.c.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,414 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.50.200.bam.bai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,418 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/c.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,422 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/snps.bed.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,995 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/v.vcf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:48,998 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/example.narrowPeak -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,002 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.bed.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,005 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.1.100.bam.bai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,008 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/mm9.bed12 -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,011 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/y.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,014 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,022 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,027 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/genome.fa -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,030 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.1.100.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,033 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.sorted.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,036 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/issue319.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,039 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test.fa -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,041 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/m1.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,044 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,062 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.gff.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,064 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/exons.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,067 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/vcf-stderr-test.vcf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,071 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/hg38-base.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,075 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/issue_121.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,078 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.othersort.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,081 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,084 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.cram -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,087 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,091 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,094 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/bedpe.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,097 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/issue319.vcf.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,101 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test_bedpe.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,104 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/tag_test2.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,107 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/b.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,110 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/164.gtf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,113 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/multibamcov_test.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,115 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,119 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/hg19.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,133 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/democonfig.yaml -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,137 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/tag_test1.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,140 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.igv_script -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,143 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/small.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,146 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-09T23:39:49,150 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_cbedtools.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:49,153 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_helpers.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-09T23:39:49,156 copying build/lib.linux-armv7l-cpython-311/pybedtools/bedtool.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:49,163 copying build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.pxd -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-09T23:39:49,166 creating build/bdist.linux-armv7l/wheel/pybedtools/include 2024-04-09T23:39:49,168 copying build/lib.linux-armv7l-cpython-311/pybedtools/include/bedFile.cpp -> build/bdist.linux-armv7l/wheel/pybedtools/include 2024-04-09T23:39:49,172 copying build/lib.linux-armv7l-cpython-311/pybedtools/include/fileType.cpp -> build/bdist.linux-armv7l/wheel/pybedtools/include 2024-04-09T23:39:49,175 copying build/lib.linux-armv7l-cpython-311/pybedtools/include/gzstream.cpp -> build/bdist.linux-armv7l/wheel/pybedtools/include 2024-04-09T23:39:49,178 running install_egg_info 2024-04-09T23:39:49,220 Copying pybedtools.egg-info to build/bdist.linux-armv7l/wheel/pybedtools-0.10.0-py3.11.egg-info 2024-04-09T23:39:49,233 running install_scripts 2024-04-09T23:39:49,282 creating build/bdist.linux-armv7l/wheel/pybedtools-0.10.0.dist-info/WHEEL 2024-04-09T23:39:49,284 creating '/tmp/pip-wheel-gyvt5zn2/pybedtools-0.10.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-09T23:39:49,287 adding 'pybedtools/_Window.pyx' 2024-04-09T23:39:49,289 adding 'pybedtools/__init__.py' 2024-04-09T23:39:49,306 adding 'pybedtools/bedtool.py' 2024-04-09T23:39:49,399 adding 'pybedtools/cbedtools.cpp' 2024-04-09T23:39:49,916 adding 'pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so' 2024-04-09T23:39:49,933 adding 'pybedtools/cbedtools.pxd' 2024-04-09T23:39:49,937 adding 'pybedtools/cbedtools.pyx' 2024-04-09T23:39:49,989 adding 'pybedtools/featurefuncs.cpp' 2024-04-09T23:39:50,291 adding 'pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so' 2024-04-09T23:39:50,302 adding 'pybedtools/featurefuncs.pyx' 2024-04-09T23:39:50,304 adding 'pybedtools/filenames.py' 2024-04-09T23:39:50,313 adding 'pybedtools/genome_registry.py' 2024-04-09T23:39:50,317 adding 'pybedtools/helpers.py' 2024-04-09T23:39:50,318 adding 'pybedtools/logger.py' 2024-04-09T23:39:50,321 adding 'pybedtools/parallel.py' 2024-04-09T23:39:50,322 adding 'pybedtools/paths.py' 2024-04-09T23:39:50,324 adding 'pybedtools/settings.py' 2024-04-09T23:39:50,325 adding 'pybedtools/stats.py' 2024-04-09T23:39:50,326 adding 'pybedtools/version.py' 2024-04-09T23:39:50,328 adding 'pybedtools/contrib/__init__.py' 2024-04-09T23:39:50,330 adding 'pybedtools/contrib/bigbed.py' 2024-04-09T23:39:50,331 adding 'pybedtools/contrib/bigwig.py' 2024-04-09T23:39:50,333 adding 'pybedtools/contrib/intersection_matrix.py' 2024-04-09T23:39:50,336 adding 'pybedtools/contrib/long_range_interaction.py' 2024-04-09T23:39:50,339 adding 'pybedtools/contrib/plotting.py' 2024-04-09T23:39:50,341 adding 'pybedtools/contrib/venn_maker.py' 2024-04-09T23:39:50,344 adding 'pybedtools/include/bedFile.cpp' 2024-04-09T23:39:50,345 adding 'pybedtools/include/fileType.cpp' 2024-04-09T23:39:50,347 adding 'pybedtools/include/gzstream.cpp' 2024-04-09T23:39:50,349 adding 'pybedtools/test/__init__.py' 2024-04-09T23:39:50,350 adding 'pybedtools/test/genomepy_integration.py' 2024-04-09T23:39:50,352 adding 'pybedtools/test/regression_tests.py' 2024-04-09T23:39:50,358 adding 'pybedtools/test/test_1.py' 2024-04-09T23:39:50,360 adding 'pybedtools/test/test_cbedtools.py' 2024-04-09T23:39:50,362 adding 'pybedtools/test/test_contrib.py' 2024-04-09T23:39:50,363 adding 'pybedtools/test/test_gzip_support.py' 2024-04-09T23:39:50,365 adding 'pybedtools/test/test_helpers.py' 2024-04-09T23:39:50,369 adding 'pybedtools/test/test_issues.py' 2024-04-09T23:39:50,371 adding 'pybedtools/test/test_iter.py' 2024-04-09T23:39:50,372 adding 'pybedtools/test/test_len_leak.py' 2024-04-09T23:39:50,373 adding 'pybedtools/test/test_pathlib.py' 2024-04-09T23:39:50,375 adding 'pybedtools/test/tfuncs.py' 2024-04-09T23:39:50,378 adding 'pybedtools/test/data/1000genomes-example.vcf' 2024-04-09T23:39:50,379 adding 'pybedtools/test/data/1000genomes-example.vcf.gz' 2024-04-09T23:39:50,381 adding 'pybedtools/test/data/164.gtf' 2024-04-09T23:39:50,394 adding 'pybedtools/test/data/BEAF_Kc_Bushey_2009.bed' 2024-04-09T23:39:50,407 adding 'pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed' 2024-04-09T23:39:50,417 adding 'pybedtools/test/data/CTCF_Kc_Bushey_2009.bed' 2024-04-09T23:39:50,429 adding 'pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed' 2024-04-09T23:39:50,452 adding 'pybedtools/test/data/Cp190_Kc_Bushey_2009.bed' 2024-04-09T23:39:50,475 adding 'pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed' 2024-04-09T23:39:50,492 adding 'pybedtools/test/data/SuHw_Kc_Bushey_2009.bed' 2024-04-09T23:39:50,507 adding 'pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed' 2024-04-09T23:39:50,509 adding 'pybedtools/test/data/__init__.py' 2024-04-09T23:39:50,510 adding 'pybedtools/test/data/a.bed' 2024-04-09T23:39:50,511 adding 'pybedtools/test/data/a.bed.gz' 2024-04-09T23:39:50,513 adding 'pybedtools/test/data/a.bed.gz.tbi' 2024-04-09T23:39:50,514 adding 'pybedtools/test/data/a.igv_script' 2024-04-09T23:39:50,516 adding 'pybedtools/test/data/a.links.html' 2024-04-09T23:39:50,517 adding 'pybedtools/test/data/b.bed' 2024-04-09T23:39:50,518 adding 'pybedtools/test/data/bedpe.bed' 2024-04-09T23:39:50,519 adding 'pybedtools/test/data/bedpe2.bed' 2024-04-09T23:39:50,521 adding 'pybedtools/test/data/c.gff' 2024-04-09T23:39:50,522 adding 'pybedtools/test/data/d.gff' 2024-04-09T23:39:50,524 adding 'pybedtools/test/data/democonfig.yaml' 2024-04-09T23:39:50,571 adding 'pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz' 2024-04-09T23:39:50,621 adding 'pybedtools/test/data/dm3-chr2L-5M.gff.gz' 2024-04-09T23:39:50,625 adding 'pybedtools/test/data/example.narrowPeak' 2024-04-09T23:39:50,626 adding 'pybedtools/test/data/exons.gff' 2024-04-09T23:39:50,627 adding 'pybedtools/test/data/expand_test.bed' 2024-04-09T23:39:50,628 adding 'pybedtools/test/data/gdc.1.100.bam' 2024-04-09T23:39:50,629 adding 'pybedtools/test/data/gdc.1.100.bam.bai' 2024-04-09T23:39:50,631 adding 'pybedtools/test/data/gdc.50.200.bam' 2024-04-09T23:39:50,632 adding 'pybedtools/test/data/gdc.50.200.bam.bai' 2024-04-09T23:39:50,633 adding 'pybedtools/test/data/gdc.bam' 2024-04-09T23:39:50,635 adding 'pybedtools/test/data/gdc.bed' 2024-04-09T23:39:50,636 adding 'pybedtools/test/data/gdc.cram' 2024-04-09T23:39:50,638 adding 'pybedtools/test/data/gdc.gff' 2024-04-09T23:39:50,639 adding 'pybedtools/test/data/gdc.gff.gz' 2024-04-09T23:39:50,640 adding 'pybedtools/test/data/gdc.othersort.bam' 2024-04-09T23:39:50,642 adding 'pybedtools/test/data/gdc.sorted.bam' 2024-04-09T23:39:50,643 adding 'pybedtools/test/data/gdc.sorted.bam.bai' 2024-04-09T23:39:50,645 adding 'pybedtools/test/data/genome.fa' 2024-04-09T23:39:50,669 adding 'pybedtools/test/data/hg19.gff' 2024-04-09T23:39:50,671 adding 'pybedtools/test/data/hg38-base.bed' 2024-04-09T23:39:50,672 adding 'pybedtools/test/data/hg38-problem.bed' 2024-04-09T23:39:50,673 adding 'pybedtools/test/data/issue319.bed' 2024-04-09T23:39:50,684 adding 'pybedtools/test/data/issue319.out.bed' 2024-04-09T23:39:50,688 adding 'pybedtools/test/data/issue319.vcf.gz' 2024-04-09T23:39:50,689 adding 'pybedtools/test/data/issue_121.bam' 2024-04-09T23:39:50,690 adding 'pybedtools/test/data/m1.bed' 2024-04-09T23:39:50,691 adding 'pybedtools/test/data/mm9.bed12' 2024-04-09T23:39:50,693 adding 'pybedtools/test/data/multibamcov_test.bed' 2024-04-09T23:39:50,694 adding 'pybedtools/test/data/reads.bam' 2024-04-09T23:39:50,700 adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed' 2024-04-09T23:39:50,702 adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz' 2024-04-09T23:39:50,703 adding 'pybedtools/test/data/small.bam' 2024-04-09T23:39:50,705 adding 'pybedtools/test/data/small.fastq' 2024-04-09T23:39:51,671 adding 'pybedtools/test/data/snps.bed.gz' 2024-04-09T23:39:51,725 adding 'pybedtools/test/data/tag_test1.bed' 2024-04-09T23:39:51,726 adding 'pybedtools/test/data/tag_test2.bed' 2024-04-09T23:39:51,728 adding 'pybedtools/test/data/test.fa' 2024-04-09T23:39:51,729 adding 'pybedtools/test/data/test.fa.fai' 2024-04-09T23:39:51,730 adding 'pybedtools/test/data/test_bedpe.bed' 2024-04-09T23:39:51,731 adding 'pybedtools/test/data/test_peaks.bed' 2024-04-09T23:39:51,732 adding 'pybedtools/test/data/test_tsses.bed' 2024-04-09T23:39:51,734 adding 'pybedtools/test/data/v.vcf' 2024-04-09T23:39:51,735 adding 'pybedtools/test/data/vcf-stderr-test.bed' 2024-04-09T23:39:51,736 adding 'pybedtools/test/data/vcf-stderr-test.vcf' 2024-04-09T23:39:51,738 adding 'pybedtools/test/data/venn.b.bed' 2024-04-09T23:39:51,740 adding 'pybedtools/test/data/venn.c.bed' 2024-04-09T23:39:51,954 adding 'pybedtools/test/data/x.bam' 2024-04-09T23:39:52,302 adding 'pybedtools/test/data/x.bed' 2024-04-09T23:39:52,319 adding 'pybedtools/test/data/y.bam' 2024-04-09T23:39:52,321 adding 'pybedtools-0.10.0.dist-info/LICENSE.txt' 2024-04-09T23:39:52,323 adding 'pybedtools-0.10.0.dist-info/METADATA' 2024-04-09T23:39:52,324 adding 'pybedtools-0.10.0.dist-info/WHEEL' 2024-04-09T23:39:52,325 adding 'pybedtools-0.10.0.dist-info/top_level.txt' 2024-04-09T23:39:52,327 adding 'pybedtools-0.10.0.dist-info/RECORD' 2024-04-09T23:39:52,692 removing build/bdist.linux-armv7l/wheel 2024-04-09T23:39:52,877 Building wheel for pybedtools (setup.py): finished with status 'done' 2024-04-09T23:39:53,019 Created wheel for pybedtools: filename=pybedtools-0.10.0-cp311-cp311-linux_armv7l.whl size=14166158 sha256=8ed4e3acbf7d2c44cde5721146f73763438e5ddf8656a0826730d8cb6d6dfb25 2024-04-09T23:39:53,021 Stored in directory: /tmp/pip-ephem-wheel-cache-lu9yzdkc/wheels/99/09/f0/681320279aa6dcbc1cedd5503c385e9eb38a2b4531dd8d4680 2024-04-09T23:39:53,043 Successfully built pybedtools 2024-04-09T23:39:53,768 Removed build tracker: '/tmp/pip-build-tracker-ekdnxlq1'