2024-04-10T01:38:35,439 Created temporary directory: /tmp/pip-build-tracker-ia_e1v91 2024-04-10T01:38:35,440 Initialized build tracking at /tmp/pip-build-tracker-ia_e1v91 2024-04-10T01:38:35,440 Created build tracker: /tmp/pip-build-tracker-ia_e1v91 2024-04-10T01:38:35,440 Entered build tracker: /tmp/pip-build-tracker-ia_e1v91 2024-04-10T01:38:35,441 Created temporary directory: /tmp/pip-wheel-f2a0ra1y 2024-04-10T01:38:35,445 Created temporary directory: /tmp/pip-ephem-wheel-cache-fcm7g0yf 2024-04-10T01:38:35,469 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-10T01:38:35,472 2 location(s) to search for versions of pybedtools: 2024-04-10T01:38:35,472 * https://pypi.org/simple/pybedtools/ 2024-04-10T01:38:35,472 * https://www.piwheels.org/simple/pybedtools/ 2024-04-10T01:38:35,473 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2024-04-10T01:38:35,474 Getting page https://pypi.org/simple/pybedtools/ 2024-04-10T01:38:35,475 Found index url https://pypi.org/simple/ 2024-04-10T01:38:35,526 Fetched page https://pypi.org/simple/pybedtools/ as application/vnd.pypi.simple.v1+json 2024-04-10T01:38:35,533 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2024-04-10T01:38:35,533 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2024-04-10T01:38:35,533 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2024-04-10T01:38:35,534 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5 2024-04-10T01:38:35,534 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2024-04-10T01:38:35,534 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2024-04-10T01:38:35,534 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6 2024-04-10T01:38:35,535 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2024-04-10T01:38:35,535 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2024-04-10T01:38:35,535 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2024-04-10T01:38:35,535 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2024-04-10T01:38:35,536 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2024-04-10T01:38:35,536 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2024-04-10T01:38:35,536 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2024-04-10T01:38:35,537 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2024-04-10T01:38:35,537 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2024-04-10T01:38:35,537 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2024-04-10T01:38:35,537 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2024-04-10T01:38:35,538 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2024-04-10T01:38:35,538 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2024-04-10T01:38:35,538 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2024-04-10T01:38:35,539 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2024-04-10T01:38:35,539 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2024-04-10T01:38:35,539 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2024-04-10T01:38:35,539 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2024-04-10T01:38:35,540 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2024-04-10T01:38:35,540 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2024-04-10T01:38:35,540 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2024-04-10T01:38:35,540 Found link https://files.pythonhosted.org/packages/58/e2/410bb188b47582e2fd2f7176173b7b7bf46e122bb17fb4422552f4a6c604/pybedtools-0.9.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.0 2024-04-10T01:38:35,541 Found link https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.1 2024-04-10T01:38:35,541 Found link https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.10.0 2024-04-10T01:38:35,541 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybedtools/ 2024-04-10T01:38:35,542 Getting page https://www.piwheels.org/simple/pybedtools/ 2024-04-10T01:38:35,543 Found index url https://www.piwheels.org/simple/ 2024-04-10T01:38:35,961 Fetched page https://www.piwheels.org/simple/pybedtools/ as text/html 2024-04-10T01:38:36,010 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.10.0-cp311-cp311-linux_armv6l.whl#sha256=8ed4e3acbf7d2c44cde5721146f73763438e5ddf8656a0826730d8cb6d6dfb25 (from https://www.piwheels.org/simple/pybedtools/) 2024-04-10T01:38:36,011 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.10.0-cp311-cp311-linux_armv7l.whl#sha256=8ed4e3acbf7d2c44cde5721146f73763438e5ddf8656a0826730d8cb6d6dfb25 (from https://www.piwheels.org/simple/pybedtools/) 2024-04-10T01:38:36,011 Skipping link: No binaries permitted for pybedtools: 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https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp35-cp35m-linux_armv7l.whl#sha256=4a8563d567bdbcc4ae26db720acf3980bc4c63af83effdb6ca5e72145e8ddc6f (from https://www.piwheels.org/simple/pybedtools/) 2024-04-10T01:38:36,035 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.2.2.dev0-py3-none-any.whl#sha256=37efef7ea02a872e8d60cd34e5a36bd3e480eaccf7121bd8ac67647dd4550efc (from https://www.piwheels.org/simple/pybedtools/) 2024-04-10T01:38:36,035 Skipping link: not a file: https://www.piwheels.org/simple/pybedtools/ 2024-04-10T01:38:36,035 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2024-04-10T01:38:36,057 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2024-04-10T01:38:36,074 Collecting pybedtools==0.10.0 2024-04-10T01:38:36,076 Created temporary directory: /tmp/pip-unpack-l_5bn9fh 2024-04-10T01:38:36,120 Downloading pybedtools-0.10.0.tar.gz (12.6 MB) 2024-04-10T01:38:37,622 Added pybedtools==0.10.0 from https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz to build tracker '/tmp/pip-build-tracker-ia_e1v91' 2024-04-10T01:38:37,623 Running setup.py (path:/tmp/pip-wheel-f2a0ra1y/pybedtools_cf0f978755814d30a6f922a40e20a11a/setup.py) egg_info for package pybedtools 2024-04-10T01:38:37,624 Created temporary directory: /tmp/pip-pip-egg-info-4xbus5za 2024-04-10T01:38:37,624 Preparing metadata (setup.py): started 2024-04-10T01:38:37,625 Running command python setup.py egg_info 2024-04-10T01:38:38,323 /tmp/pip-wheel-f2a0ra1y/pybedtools_cf0f978755814d30a6f922a40e20a11a/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2024-04-10T01:38:38,324 import pkg_resources 2024-04-10T01:38:38,568 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'language_level' 2024-04-10T01:38:38,568 warnings.warn(msg) 2024-04-10T01:38:38,732 running egg_info 2024-04-10T01:38:38,733 creating /tmp/pip-pip-egg-info-4xbus5za/pybedtools.egg-info 2024-04-10T01:38:38,757 writing /tmp/pip-pip-egg-info-4xbus5za/pybedtools.egg-info/PKG-INFO 2024-04-10T01:38:38,761 writing dependency_links to /tmp/pip-pip-egg-info-4xbus5za/pybedtools.egg-info/dependency_links.txt 2024-04-10T01:38:38,763 writing requirements to /tmp/pip-pip-egg-info-4xbus5za/pybedtools.egg-info/requires.txt 2024-04-10T01:38:38,764 writing top-level names to /tmp/pip-pip-egg-info-4xbus5za/pybedtools.egg-info/top_level.txt 2024-04-10T01:38:38,765 writing manifest file '/tmp/pip-pip-egg-info-4xbus5za/pybedtools.egg-info/SOURCES.txt' 2024-04-10T01:38:38,841 reading manifest file '/tmp/pip-pip-egg-info-4xbus5za/pybedtools.egg-info/SOURCES.txt' 2024-04-10T01:38:38,843 adding license file 'LICENSE.txt' 2024-04-10T01:38:38,848 writing manifest file '/tmp/pip-pip-egg-info-4xbus5za/pybedtools.egg-info/SOURCES.txt' 2024-04-10T01:38:38,944 Preparing metadata (setup.py): finished with status 'done' 2024-04-10T01:38:38,949 Source in /tmp/pip-wheel-f2a0ra1y/pybedtools_cf0f978755814d30a6f922a40e20a11a has version 0.10.0, which satisfies requirement pybedtools==0.10.0 from https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz 2024-04-10T01:38:38,950 Removed pybedtools==0.10.0 from https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz from build tracker '/tmp/pip-build-tracker-ia_e1v91' 2024-04-10T01:38:38,954 Created temporary directory: /tmp/pip-unpack-1iow8g2m 2024-04-10T01:38:38,955 Created temporary directory: /tmp/pip-unpack-tsiispk8 2024-04-10T01:38:38,959 Building wheels for collected packages: pybedtools 2024-04-10T01:38:38,963 Created temporary directory: /tmp/pip-wheel-0zia2c5l 2024-04-10T01:38:38,963 Building wheel for pybedtools (setup.py): started 2024-04-10T01:38:38,964 Destination directory: /tmp/pip-wheel-0zia2c5l 2024-04-10T01:38:38,965 Running command python setup.py bdist_wheel 2024-04-10T01:38:39,653 /tmp/pip-wheel-f2a0ra1y/pybedtools_cf0f978755814d30a6f922a40e20a11a/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2024-04-10T01:38:39,654 import pkg_resources 2024-04-10T01:38:39,897 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'language_level' 2024-04-10T01:38:39,897 warnings.warn(msg) 2024-04-10T01:38:40,052 running bdist_wheel 2024-04-10T01:38:40,075 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2024-04-10T01:38:40,100 running build 2024-04-10T01:38:40,100 running build_py 2024-04-10T01:38:40,128 creating build 2024-04-10T01:38:40,128 creating build/lib.linux-armv7l-cpython-39 2024-04-10T01:38:40,129 creating build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,130 copying pybedtools/stats.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,132 copying pybedtools/settings.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,134 copying pybedtools/parallel.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,136 copying pybedtools/paths.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,138 copying pybedtools/version.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,139 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,143 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,146 copying pybedtools/logger.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,148 copying pybedtools/filenames.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,150 copying pybedtools/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,152 copying pybedtools/helpers.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,155 creating build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,156 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,159 copying pybedtools/test/test_issues.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,161 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,163 copying pybedtools/test/genomepy_integration.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,164 copying pybedtools/test/test_1.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,168 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,170 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,172 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,173 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,175 copying pybedtools/test/test_pathlib.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,176 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,179 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,181 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-10T01:38:40,183 creating build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-10T01:38:40,184 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-10T01:38:40,186 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-10T01:38:40,188 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-10T01:38:40,190 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-10T01:38:40,192 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-10T01:38:40,194 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-10T01:38:40,196 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-10T01:38:40,200 creating build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,200 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,202 running egg_info 2024-04-10T01:38:40,234 creating pybedtools.egg-info 2024-04-10T01:38:40,260 writing pybedtools.egg-info/PKG-INFO 2024-04-10T01:38:40,263 writing dependency_links to pybedtools.egg-info/dependency_links.txt 2024-04-10T01:38:40,265 writing requirements to pybedtools.egg-info/requires.txt 2024-04-10T01:38:40,266 writing top-level names to pybedtools.egg-info/top_level.txt 2024-04-10T01:38:40,267 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2024-04-10T01:38:40,312 reading manifest file 'pybedtools.egg-info/SOURCES.txt' 2024-04-10T01:38:40,313 adding license file 'LICENSE.txt' 2024-04-10T01:38:40,319 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2024-04-10T01:38:40,322 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pybedtools.include' is absent from the `packages` configuration. 2024-04-10T01:38:40,322 !! 2024-04-10T01:38:40,322 ******************************************************************************** 2024-04-10T01:38:40,323 ############################ 2024-04-10T01:38:40,323 # Package would be ignored # 2024-04-10T01:38:40,323 ############################ 2024-04-10T01:38:40,323 Python recognizes 'pybedtools.include' as an importable package[^1], 2024-04-10T01:38:40,323 but it is absent from setuptools' `packages` configuration. 2024-04-10T01:38:40,323 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-10T01:38:40,323 package, please make sure that 'pybedtools.include' is explicitly added 2024-04-10T01:38:40,323 to the `packages` configuration field. 2024-04-10T01:38:40,324 Alternatively, you can also rely on setuptools' discovery methods 2024-04-10T01:38:40,324 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-10T01:38:40,324 instead of `find_packages(...)`/`find:`). 2024-04-10T01:38:40,324 You can read more about "package discovery" on setuptools documentation page: 2024-04-10T01:38:40,324 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-10T01:38:40,325 If you don't want 'pybedtools.include' to be distributed and are 2024-04-10T01:38:40,325 already explicitly excluding 'pybedtools.include' via 2024-04-10T01:38:40,325 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-10T01:38:40,325 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-10T01:38:40,325 combination with a more fine grained `package-data` configuration. 2024-04-10T01:38:40,325 You can read more about "package data files" on setuptools documentation page: 2024-04-10T01:38:40,326 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-10T01:38:40,326 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-10T01:38:40,326 even if it does not contain any `.py` files. 2024-04-10T01:38:40,326 On the other hand, currently there is no concept of package data 2024-04-10T01:38:40,326 directory, all directories are treated like packages. 2024-04-10T01:38:40,327 ******************************************************************************** 2024-04-10T01:38:40,327 !! 2024-04-10T01:38:40,327 check.warn(importable) 2024-04-10T01:38:40,341 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,343 copying pybedtools/cbedtools.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,371 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,374 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,376 copying pybedtools/featurefuncs.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,394 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:40,396 creating build/lib.linux-armv7l-cpython-39/pybedtools/include 2024-04-10T01:38:40,397 copying pybedtools/include/bedFile.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools/include 2024-04-10T01:38:40,399 copying pybedtools/include/fileType.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools/include 2024-04-10T01:38:40,401 copying pybedtools/include/gzstream.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools/include 2024-04-10T01:38:40,404 copying pybedtools/test/data/1000genomes-example.vcf.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,406 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,407 copying pybedtools/test/data/a.bed.gz.tbi -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,409 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,413 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,416 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,421 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,423 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,427 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,429 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,432 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,434 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,435 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,437 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,439 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,441 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,443 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,444 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,457 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,464 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,466 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,468 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,470 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,471 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,473 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,475 copying pybedtools/test/data/gdc.cram -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,477 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,481 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,483 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,485 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,487 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,490 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,589 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,594 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,596 copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,599 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,601 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,637 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,640 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,642 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,645 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,650 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,652 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,654 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,656 copying pybedtools/test/data/issue319.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,658 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,659 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,661 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,663 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,665 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,667 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,669 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,671 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,672 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,674 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,683 copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,684 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,809 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,810 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,812 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,814 copying pybedtools/test/data/a.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,816 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,818 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,819 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,821 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,823 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,825 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,827 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,829 copying pybedtools/test/data/genome.fa -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,831 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,833 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,834 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,838 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,839 copying pybedtools/test/data/1000genomes-example.vcf.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,841 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,843 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,846 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,849 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,852 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,856 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,860 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,865 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,869 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,872 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,874 copying pybedtools/test/data/a.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,875 copying pybedtools/test/data/a.bed.gz.tbi -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,877 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,879 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,881 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,882 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,884 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,886 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,888 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,890 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,891 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,903 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,915 copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,917 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,919 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,921 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,922 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,924 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,926 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,928 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,929 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,931 copying pybedtools/test/data/gdc.cram -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,933 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,935 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,936 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,938 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,940 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,941 copying pybedtools/test/data/genome.fa -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,943 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,951 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,952 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,954 copying pybedtools/test/data/issue319.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,956 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,962 copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,965 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,967 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,969 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,970 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,972 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,974 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,977 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,979 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,981 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:40,983 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,146 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,148 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,150 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,152 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,154 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,156 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,158 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,160 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,162 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,165 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,167 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,170 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,172 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,213 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,255 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-10T01:38:41,262 running build_ext 2024-04-10T01:38:41,268 building 'pybedtools.cbedtools' extension 2024-04-10T01:38:41,269 creating build/temp.linux-armv7l-cpython-39 2024-04-10T01:38:41,270 creating build/temp.linux-armv7l-cpython-39/pybedtools 2024-04-10T01:38:41,271 creating build/temp.linux-armv7l-cpython-39/pybedtools/include 2024-04-10T01:38:41,272 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/cbedtools.o 2024-04-10T01:39:15,326 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/bedFile.o 2024-04-10T01:39:22,964 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/fileType.o 2024-04-10T01:39:24,219 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/gzstream.o 2024-04-10T01:39:25,556 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pybedtools/cbedtools.o build/temp.linux-armv7l-cpython-39/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-39/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-39/pybedtools/include/gzstream.o -L/usr/lib -lstdc++ -lz -o build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.cpython-39-arm-linux-gnueabihf.so 2024-04-10T01:39:25,973 building 'pybedtools.featurefuncs' extension 2024-04-10T01:39:25,974 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/featurefuncs.o 2024-04-10T01:39:39,988 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/bedFile.o 2024-04-10T01:39:47,637 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/fileType.o 2024-04-10T01:39:48,886 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/gzstream.o 2024-04-10T01:39:50,269 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pybedtools/featurefuncs.o build/temp.linux-armv7l-cpython-39/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-39/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-39/pybedtools/include/gzstream.o -L/usr/lib -lstdc++ -lz -o build/lib.linux-armv7l-cpython-39/pybedtools/featurefuncs.cpython-39-arm-linux-gnueabihf.so 2024-04-10T01:39:50,670 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-04-10T01:39:50,670 !! 2024-04-10T01:39:50,671 ******************************************************************************** 2024-04-10T01:39:50,671 Please avoid running ``setup.py`` directly. 2024-04-10T01:39:50,671 Instead, use pypa/build, pypa/installer or other 2024-04-10T01:39:50,671 standards-based tools. 2024-04-10T01:39:50,671 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-04-10T01:39:50,671 ******************************************************************************** 2024-04-10T01:39:50,672 !! 2024-04-10T01:39:50,672 self.initialize_options() 2024-04-10T01:39:50,695 installing to build/bdist.linux-armv7l/wheel 2024-04-10T01:39:50,696 running install 2024-04-10T01:39:50,723 running install_lib 2024-04-10T01:39:50,747 creating build/bdist.linux-armv7l 2024-04-10T01:39:50,748 creating build/bdist.linux-armv7l/wheel 2024-04-10T01:39:50,754 creating build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:50,756 creating build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:50,757 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_helpers.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:50,760 creating build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,761 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/1000genomes-example.vcf.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,763 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,765 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,766 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,770 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/venn.b.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,772 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,777 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/small.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,778 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,782 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/164.gtf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,784 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,788 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/vcf-stderr-test.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,789 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/tag_test1.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,791 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.1.100.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,793 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/multibamcov_test.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,794 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/bedpe2.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,796 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/democonfig.yaml -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,797 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test_tsses.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,799 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,810 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/hg19.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,817 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.50.200.bam.bai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,819 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,821 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/1000genomes-example.vcf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,823 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,824 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/reads.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,826 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/hg38-base.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,828 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.cram -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,829 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,833 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/mm9.bed12 -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,835 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/c.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,837 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.1.100.bam.bai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,838 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,841 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/x.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,894 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,898 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/venn.c.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,900 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/issue319.vcf.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,903 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,905 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/x.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,937 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test_peaks.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,938 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.gff.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,940 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,943 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/issue319.out.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,948 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.igv_script -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,950 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test_bedpe.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,952 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/small.fastq -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,954 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/issue319.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,956 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/expand_test.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,958 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test.fa.fai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,960 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/tag_test2.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,962 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/bedpe.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,963 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,965 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/vcf-stderr-test.vcf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,968 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/exons.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,970 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/b.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,971 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/v.vcf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,974 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,983 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/example.narrowPeak -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:50,985 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/snps.bed.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,122 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.50.200.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,124 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,125 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/issue_121.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,127 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.bed.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,129 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,130 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/hg38-problem.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,132 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/y.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,134 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.othersort.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,136 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.links.html -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,137 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/d.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,139 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/m1.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,140 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/genome.fa -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,142 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test.fa -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,144 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.sorted.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,145 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2024-04-10T01:39:51,148 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_issues.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:51,151 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/tfuncs.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:51,153 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/genomepy_integration.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:51,154 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_1.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:51,158 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_contrib.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:51,160 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/regression_tests.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:51,162 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_len_leak.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:51,163 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_gzip_support.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:51,165 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_pathlib.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:51,167 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_iter.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:51,169 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_cbedtools.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:51,171 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2024-04-10T01:39:51,172 copying build/lib.linux-armv7l-cpython-39/pybedtools/featurefuncs.cpp -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,189 copying build/lib.linux-armv7l-cpython-39/pybedtools/stats.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,191 copying build/lib.linux-armv7l-cpython-39/pybedtools/settings.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,193 copying build/lib.linux-armv7l-cpython-39/pybedtools/parallel.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,195 copying build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.cpp -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,224 copying build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.pyx -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,227 copying build/lib.linux-armv7l-cpython-39/pybedtools/paths.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,228 copying build/lib.linux-armv7l-cpython-39/pybedtools/version.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,230 creating build/bdist.linux-armv7l/wheel/pybedtools/include 2024-04-10T01:39:51,231 copying build/lib.linux-armv7l-cpython-39/pybedtools/include/fileType.cpp -> build/bdist.linux-armv7l/wheel/pybedtools/include 2024-04-10T01:39:51,233 copying build/lib.linux-armv7l-cpython-39/pybedtools/include/bedFile.cpp -> build/bdist.linux-armv7l/wheel/pybedtools/include 2024-04-10T01:39:51,235 copying build/lib.linux-armv7l-cpython-39/pybedtools/include/gzstream.cpp -> build/bdist.linux-armv7l/wheel/pybedtools/include 2024-04-10T01:39:51,238 copying build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,282 copying build/lib.linux-armv7l-cpython-39/pybedtools/_Window.pyx -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,284 creating build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-10T01:39:51,285 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/bigbed.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-10T01:39:51,287 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/bigwig.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-10T01:39:51,289 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/venn_maker.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-10T01:39:51,291 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/intersection_matrix.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-10T01:39:51,293 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-10T01:39:51,295 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/long_range_interaction.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-10T01:39:51,297 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/plotting.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2024-04-10T01:39:51,300 copying build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.pxd -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,301 copying build/lib.linux-armv7l-cpython-39/pybedtools/featurefuncs.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,335 copying build/lib.linux-armv7l-cpython-39/pybedtools/bedtool.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,340 copying build/lib.linux-armv7l-cpython-39/pybedtools/genome_registry.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,345 copying build/lib.linux-armv7l-cpython-39/pybedtools/logger.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,347 copying build/lib.linux-armv7l-cpython-39/pybedtools/filenames.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,349 copying build/lib.linux-armv7l-cpython-39/pybedtools/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,351 copying build/lib.linux-armv7l-cpython-39/pybedtools/helpers.py -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,354 copying build/lib.linux-armv7l-cpython-39/pybedtools/featurefuncs.pyx -> build/bdist.linux-armv7l/wheel/pybedtools 2024-04-10T01:39:51,356 running install_egg_info 2024-04-10T01:39:51,387 Copying pybedtools.egg-info to build/bdist.linux-armv7l/wheel/pybedtools-0.10.0-py3.9.egg-info 2024-04-10T01:39:51,400 running install_scripts 2024-04-10T01:39:51,415 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2024-04-10T01:39:51,419 creating build/bdist.linux-armv7l/wheel/pybedtools-0.10.0.dist-info/WHEEL 2024-04-10T01:39:51,422 creating '/tmp/pip-wheel-0zia2c5l/pybedtools-0.10.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-10T01:39:51,425 adding 'pybedtools/_Window.pyx' 2024-04-10T01:39:51,427 adding 'pybedtools/__init__.py' 2024-04-10T01:39:51,444 adding 'pybedtools/bedtool.py' 2024-04-10T01:39:51,577 adding 'pybedtools/cbedtools.cpp' 2024-04-10T01:39:52,106 adding 'pybedtools/cbedtools.cpython-39-arm-linux-gnueabihf.so' 2024-04-10T01:39:52,126 adding 'pybedtools/cbedtools.pxd' 2024-04-10T01:39:52,130 adding 'pybedtools/cbedtools.pyx' 2024-04-10T01:39:52,182 adding 'pybedtools/featurefuncs.cpp' 2024-04-10T01:39:52,484 adding 'pybedtools/featurefuncs.cpython-39-arm-linux-gnueabihf.so' 2024-04-10T01:39:52,497 adding 'pybedtools/featurefuncs.pyx' 2024-04-10T01:39:52,498 adding 'pybedtools/filenames.py' 2024-04-10T01:39:52,507 adding 'pybedtools/genome_registry.py' 2024-04-10T01:39:52,511 adding 'pybedtools/helpers.py' 2024-04-10T01:39:52,513 adding 'pybedtools/logger.py' 2024-04-10T01:39:52,514 adding 'pybedtools/parallel.py' 2024-04-10T01:39:52,516 adding 'pybedtools/paths.py' 2024-04-10T01:39:52,517 adding 'pybedtools/settings.py' 2024-04-10T01:39:52,518 adding 'pybedtools/stats.py' 2024-04-10T01:39:52,519 adding 'pybedtools/version.py' 2024-04-10T01:39:52,521 adding 'pybedtools/contrib/__init__.py' 2024-04-10T01:39:52,522 adding 'pybedtools/contrib/bigbed.py' 2024-04-10T01:39:52,524 adding 'pybedtools/contrib/bigwig.py' 2024-04-10T01:39:52,525 adding 'pybedtools/contrib/intersection_matrix.py' 2024-04-10T01:39:52,528 adding 'pybedtools/contrib/long_range_interaction.py' 2024-04-10T01:39:52,531 adding 'pybedtools/contrib/plotting.py' 2024-04-10T01:39:52,533 adding 'pybedtools/contrib/venn_maker.py' 2024-04-10T01:39:52,535 adding 'pybedtools/include/bedFile.cpp' 2024-04-10T01:39:52,536 adding 'pybedtools/include/fileType.cpp' 2024-04-10T01:39:52,538 adding 'pybedtools/include/gzstream.cpp' 2024-04-10T01:39:52,540 adding 'pybedtools/test/__init__.py' 2024-04-10T01:39:52,541 adding 'pybedtools/test/genomepy_integration.py' 2024-04-10T01:39:52,542 adding 'pybedtools/test/regression_tests.py' 2024-04-10T01:39:52,549 adding 'pybedtools/test/test_1.py' 2024-04-10T01:39:52,551 adding 'pybedtools/test/test_cbedtools.py' 2024-04-10T01:39:52,552 adding 'pybedtools/test/test_contrib.py' 2024-04-10T01:39:52,554 adding 'pybedtools/test/test_gzip_support.py' 2024-04-10T01:39:52,556 adding 'pybedtools/test/test_helpers.py' 2024-04-10T01:39:52,559 adding 'pybedtools/test/test_issues.py' 2024-04-10T01:39:52,561 adding 'pybedtools/test/test_iter.py' 2024-04-10T01:39:52,562 adding 'pybedtools/test/test_len_leak.py' 2024-04-10T01:39:52,564 adding 'pybedtools/test/test_pathlib.py' 2024-04-10T01:39:52,565 adding 'pybedtools/test/tfuncs.py' 2024-04-10T01:39:52,568 adding 'pybedtools/test/data/1000genomes-example.vcf' 2024-04-10T01:39:52,569 adding 'pybedtools/test/data/1000genomes-example.vcf.gz' 2024-04-10T01:39:52,570 adding 'pybedtools/test/data/164.gtf' 2024-04-10T01:39:52,583 adding 'pybedtools/test/data/BEAF_Kc_Bushey_2009.bed' 2024-04-10T01:39:52,597 adding 'pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed' 2024-04-10T01:39:52,608 adding 'pybedtools/test/data/CTCF_Kc_Bushey_2009.bed' 2024-04-10T01:39:52,621 adding 'pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed' 2024-04-10T01:39:52,644 adding 'pybedtools/test/data/Cp190_Kc_Bushey_2009.bed' 2024-04-10T01:39:52,667 adding 'pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed' 2024-04-10T01:39:52,685 adding 'pybedtools/test/data/SuHw_Kc_Bushey_2009.bed' 2024-04-10T01:39:52,701 adding 'pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed' 2024-04-10T01:39:52,702 adding 'pybedtools/test/data/__init__.py' 2024-04-10T01:39:52,704 adding 'pybedtools/test/data/a.bed' 2024-04-10T01:39:52,705 adding 'pybedtools/test/data/a.bed.gz' 2024-04-10T01:39:52,706 adding 'pybedtools/test/data/a.bed.gz.tbi' 2024-04-10T01:39:52,707 adding 'pybedtools/test/data/a.igv_script' 2024-04-10T01:39:52,708 adding 'pybedtools/test/data/a.links.html' 2024-04-10T01:39:52,709 adding 'pybedtools/test/data/b.bed' 2024-04-10T01:39:52,711 adding 'pybedtools/test/data/bedpe.bed' 2024-04-10T01:39:52,712 adding 'pybedtools/test/data/bedpe2.bed' 2024-04-10T01:39:52,713 adding 'pybedtools/test/data/c.gff' 2024-04-10T01:39:52,714 adding 'pybedtools/test/data/d.gff' 2024-04-10T01:39:52,715 adding 'pybedtools/test/data/democonfig.yaml' 2024-04-10T01:39:52,763 adding 'pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz' 2024-04-10T01:39:52,813 adding 'pybedtools/test/data/dm3-chr2L-5M.gff.gz' 2024-04-10T01:39:52,817 adding 'pybedtools/test/data/example.narrowPeak' 2024-04-10T01:39:52,818 adding 'pybedtools/test/data/exons.gff' 2024-04-10T01:39:52,819 adding 'pybedtools/test/data/expand_test.bed' 2024-04-10T01:39:52,820 adding 'pybedtools/test/data/gdc.1.100.bam' 2024-04-10T01:39:52,821 adding 'pybedtools/test/data/gdc.1.100.bam.bai' 2024-04-10T01:39:52,823 adding 'pybedtools/test/data/gdc.50.200.bam' 2024-04-10T01:39:52,824 adding 'pybedtools/test/data/gdc.50.200.bam.bai' 2024-04-10T01:39:52,825 adding 'pybedtools/test/data/gdc.bam' 2024-04-10T01:39:52,826 adding 'pybedtools/test/data/gdc.bed' 2024-04-10T01:39:52,827 adding 'pybedtools/test/data/gdc.cram' 2024-04-10T01:39:52,829 adding 'pybedtools/test/data/gdc.gff' 2024-04-10T01:39:52,830 adding 'pybedtools/test/data/gdc.gff.gz' 2024-04-10T01:39:52,831 adding 'pybedtools/test/data/gdc.othersort.bam' 2024-04-10T01:39:52,832 adding 'pybedtools/test/data/gdc.sorted.bam' 2024-04-10T01:39:52,833 adding 'pybedtools/test/data/gdc.sorted.bam.bai' 2024-04-10T01:39:52,834 adding 'pybedtools/test/data/genome.fa' 2024-04-10T01:39:52,859 adding 'pybedtools/test/data/hg19.gff' 2024-04-10T01:39:52,861 adding 'pybedtools/test/data/hg38-base.bed' 2024-04-10T01:39:52,862 adding 'pybedtools/test/data/hg38-problem.bed' 2024-04-10T01:39:52,864 adding 'pybedtools/test/data/issue319.bed' 2024-04-10T01:39:52,874 adding 'pybedtools/test/data/issue319.out.bed' 2024-04-10T01:39:52,878 adding 'pybedtools/test/data/issue319.vcf.gz' 2024-04-10T01:39:52,880 adding 'pybedtools/test/data/issue_121.bam' 2024-04-10T01:39:52,881 adding 'pybedtools/test/data/m1.bed' 2024-04-10T01:39:52,882 adding 'pybedtools/test/data/mm9.bed12' 2024-04-10T01:39:52,883 adding 'pybedtools/test/data/multibamcov_test.bed' 2024-04-10T01:39:52,884 adding 'pybedtools/test/data/reads.bam' 2024-04-10T01:39:52,890 adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed' 2024-04-10T01:39:52,892 adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz' 2024-04-10T01:39:52,894 adding 'pybedtools/test/data/small.bam' 2024-04-10T01:39:52,895 adding 'pybedtools/test/data/small.fastq' 2024-04-10T01:39:53,844 adding 'pybedtools/test/data/snps.bed.gz' 2024-04-10T01:39:53,898 adding 'pybedtools/test/data/tag_test1.bed' 2024-04-10T01:39:53,899 adding 'pybedtools/test/data/tag_test2.bed' 2024-04-10T01:39:53,900 adding 'pybedtools/test/data/test.fa' 2024-04-10T01:39:53,902 adding 'pybedtools/test/data/test.fa.fai' 2024-04-10T01:39:53,903 adding 'pybedtools/test/data/test_bedpe.bed' 2024-04-10T01:39:53,904 adding 'pybedtools/test/data/test_peaks.bed' 2024-04-10T01:39:53,905 adding 'pybedtools/test/data/test_tsses.bed' 2024-04-10T01:39:53,906 adding 'pybedtools/test/data/v.vcf' 2024-04-10T01:39:53,907 adding 'pybedtools/test/data/vcf-stderr-test.bed' 2024-04-10T01:39:53,909 adding 'pybedtools/test/data/vcf-stderr-test.vcf' 2024-04-10T01:39:53,910 adding 'pybedtools/test/data/venn.b.bed' 2024-04-10T01:39:53,912 adding 'pybedtools/test/data/venn.c.bed' 2024-04-10T01:39:54,122 adding 'pybedtools/test/data/x.bam' 2024-04-10T01:39:54,471 adding 'pybedtools/test/data/x.bed' 2024-04-10T01:39:54,488 adding 'pybedtools/test/data/y.bam' 2024-04-10T01:39:54,490 adding 'pybedtools-0.10.0.dist-info/LICENSE.txt' 2024-04-10T01:39:54,491 adding 'pybedtools-0.10.0.dist-info/METADATA' 2024-04-10T01:39:54,492 adding 'pybedtools-0.10.0.dist-info/WHEEL' 2024-04-10T01:39:54,493 adding 'pybedtools-0.10.0.dist-info/top_level.txt' 2024-04-10T01:39:54,495 adding 'pybedtools-0.10.0.dist-info/RECORD' 2024-04-10T01:39:54,684 removing build/bdist.linux-armv7l/wheel 2024-04-10T01:39:54,822 Building wheel for pybedtools (setup.py): finished with status 'done' 2024-04-10T01:39:54,965 Created wheel for pybedtools: filename=pybedtools-0.10.0-cp39-cp39-linux_armv7l.whl size=14150591 sha256=82efbc7a4ad4bac315f8e81f02047913d9a9c80bc3f01997ad2368a639025146 2024-04-10T01:39:54,966 Stored in directory: /tmp/pip-ephem-wheel-cache-fcm7g0yf/wheels/21/dc/88/d249cdbf2e3272e39e86d1a103243500e37972b21b1ae8fa5f 2024-04-10T01:39:54,988 Successfully built pybedtools 2024-04-10T01:39:55,335 Removed build tracker: '/tmp/pip-build-tracker-ia_e1v91'