2024-04-12T18:46:49,381 Created temporary directory: /tmp/pip-build-tracker-5x4p1bx9 2024-04-12T18:46:49,383 Initialized build tracking at /tmp/pip-build-tracker-5x4p1bx9 2024-04-12T18:46:49,383 Created build tracker: /tmp/pip-build-tracker-5x4p1bx9 2024-04-12T18:46:49,383 Entered build tracker: /tmp/pip-build-tracker-5x4p1bx9 2024-04-12T18:46:49,384 Created temporary directory: /tmp/pip-wheel-99hhlpjt 2024-04-12T18:46:49,388 Created temporary directory: /tmp/pip-ephem-wheel-cache-a76s28ic 2024-04-12T18:46:49,414 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-12T18:46:49,418 2 location(s) to search for versions of brainglobe-workflows: 2024-04-12T18:46:49,418 * https://pypi.org/simple/brainglobe-workflows/ 2024-04-12T18:46:49,418 * https://www.piwheels.org/simple/brainglobe-workflows/ 2024-04-12T18:46:49,419 Fetching project page and analyzing links: https://pypi.org/simple/brainglobe-workflows/ 2024-04-12T18:46:49,419 Getting page https://pypi.org/simple/brainglobe-workflows/ 2024-04-12T18:46:49,421 Found index url https://pypi.org/simple/ 2024-04-12T18:46:49,640 Fetched page https://pypi.org/simple/brainglobe-workflows/ as application/vnd.pypi.simple.v1+json 2024-04-12T18:46:49,644 Found link https://files.pythonhosted.org/packages/86/ff/7475753a7ca5ced322da02ae703996835522e454697fda6be04040de6f3b/brainglobe-workflows-1.0.0.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.0.0 2024-04-12T18:46:49,645 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/fd/3d/3ba19433653c5f8e4e1fefb3453ff6c6fb161c65970589784ad8d493dfc4/brainglobe_workflows-1.0.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-04-12T18:46:49,646 Found link https://files.pythonhosted.org/packages/2c/2c/63316da6fb3b7dea22844058c8c2afe92c387a0039f8ed964336584dfd69/brainglobe-workflows-1.1.0.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.0 2024-04-12T18:46:49,646 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/d4/e7/ce8124540814aceaad9c50c8976531f4e3d9e648ecedf4f5bfe4646b777a/brainglobe_workflows-1.1.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-04-12T18:46:49,647 Found link https://files.pythonhosted.org/packages/db/a3/fe90d65876b53bee6382de11980cd0dc8897c7a39ac9451e1a85063beb46/brainglobe-workflows-1.1.2.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.2 2024-04-12T18:46:49,648 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/f5/b6/659b4528b8caa5c402c7260961af18f176fecebacc610f812aaf1a792554/brainglobe_workflows-1.1.2-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-04-12T18:46:49,649 Found link https://files.pythonhosted.org/packages/cf/32/2cdab745c05ea15e566d43c878311ee978b9bd9c40ce16c91046c832d795/brainglobe-workflows-1.1.3.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.3 2024-04-12T18:46:49,650 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/fb/fa/b5a1d0706cba1ba5aa0363c3e0ec4458ce02b385f18a4aee8e01e57f968c/brainglobe_workflows-1.1.3-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-04-12T18:46:49,651 Found link https://files.pythonhosted.org/packages/55/fc/f58b0822072d009b33737a7b81ae97515eea4db6f3cef21f63fb3d7b48df/brainglobe-workflows-1.1.4.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.4 2024-04-12T18:46:49,651 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/88/b2/e9c3a4cf60dfc7e00b20b7eba18419acad78c1146aa47475266310d73ae3/brainglobe_workflows-1.1.4-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-04-12T18:46:49,652 Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/3c/22/6b2ab55ee7005098e528e52079c950d14c2564b7f5a6718d4034974e93f8/brainglobe_workflows-1.1.5-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-04-12T18:46:49,653 Found link https://files.pythonhosted.org/packages/d9/8f/ec82f41a099d5a50a5b917e0b4a087b195b1ade5a250500fe17428bfb2cf/brainglobe_workflows-1.1.5.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.5 2024-04-12T18:46:49,654 Fetching project page and analyzing links: https://www.piwheels.org/simple/brainglobe-workflows/ 2024-04-12T18:46:49,655 Getting page https://www.piwheels.org/simple/brainglobe-workflows/ 2024-04-12T18:46:49,656 Found index url https://www.piwheels.org/simple/ 2024-04-12T18:46:50,491 Fetched page https://www.piwheels.org/simple/brainglobe-workflows/ as text/html 2024-04-12T18:46:50,497 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.4-py3-none-any.whl#sha256=a40f137b87cc1cc9a28e64d115e63647f648c9a068336e13ac730697ca7b443b (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-04-12T18:46:50,498 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.3-py3-none-any.whl#sha256=4d334ac8e4da3af98e62cf68de8faef80e5bf8d7e115ad7b3bdb881a23552f86 (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-04-12T18:46:50,499 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.2-py3-none-any.whl#sha256=1e2349b462dae0287a363ad4f5902deee2ba011f684c751d61fa619803f4cf60 (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-04-12T18:46:50,500 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.0-py3-none-any.whl#sha256=a51e28508b22a8a3a84fbad104aff0ccf7ec652c7c6a612c7d55b80c3d5d5b31 (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-04-12T18:46:50,501 Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.0.0-py3-none-any.whl#sha256=9875e2cf8c7d6256d90d8026fec7102f19d325dd8480202f52100052a04dfcaf (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9) 2024-04-12T18:46:50,502 Skipping link: not a file: https://www.piwheels.org/simple/brainglobe-workflows/ 2024-04-12T18:46:50,503 Skipping link: not a file: https://pypi.org/simple/brainglobe-workflows/ 2024-04-12T18:46:50,550 Given no hashes to check 1 links for project 'brainglobe-workflows': discarding no candidates 2024-04-12T18:46:50,576 Collecting brainglobe-workflows==1.1.5 2024-04-12T18:46:50,579 Created temporary directory: /tmp/pip-unpack-iqiuqu0_ 2024-04-12T18:46:50,793 Downloading brainglobe_workflows-1.1.5.tar.gz (30 kB) 2024-04-12T18:46:50,865 Added brainglobe-workflows==1.1.5 from https://files.pythonhosted.org/packages/d9/8f/ec82f41a099d5a50a5b917e0b4a087b195b1ade5a250500fe17428bfb2cf/brainglobe_workflows-1.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-5x4p1bx9' 2024-04-12T18:46:50,873 Created temporary directory: /tmp/pip-build-env-99kz54ia 2024-04-12T18:46:50,879 Installing build dependencies: started 2024-04-12T18:46:50,880 Running command pip subprocess to install build dependencies 2024-04-12T18:46:52,028 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-12T18:46:52,569 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-12T18:46:54,622 Collecting setuptools>=45 2024-04-12T18:46:54,623 Obtaining dependency information for setuptools>=45 from https://files.pythonhosted.org/packages/cf/2e/988b6fb453899ed638bd99a48f97c3fb57897b8c6b83e439ad781733ef7d/setuptools-69.4.0-py3-none-any.whl.metadata 2024-04-12T18:46:54,630 Using cached setuptools-69.4.0-py3-none-any.whl.metadata (6.2 kB) 2024-04-12T18:46:54,831 Collecting wheel 2024-04-12T18:46:54,847 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-12T18:46:55,133 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-04-12T18:46:55,151 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2024-04-12T18:46:55,494 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-04-12T18:46:55,507 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-04-12T18:46:55,626 Collecting typing-extensions (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-04-12T18:46:55,640 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.11.0-py3-none-any.whl (34 kB) 2024-04-12T18:46:55,702 Using cached setuptools-69.4.0-py3-none-any.whl (823 kB) 2024-04-12T18:46:58,307 Installing collected packages: wheel, typing-extensions, setuptools, packaging, setuptools_scm 2024-04-12T18:46:58,555 Creating /tmp/pip-build-env-99kz54ia/overlay/local/bin 2024-04-12T18:46:58,558 changing mode of /tmp/pip-build-env-99kz54ia/overlay/local/bin/wheel to 755 2024-04-12T18:47:01,483 Successfully installed packaging-24.0 setuptools-69.4.0 setuptools_scm-8.0.4 typing-extensions-4.11.0 wheel-0.43.0 2024-04-12T18:47:02,079 Installing build dependencies: finished with status 'done' 2024-04-12T18:47:02,083 Getting requirements to build wheel: started 2024-04-12T18:47:02,084 Running command Getting requirements to build wheel 2024-04-12T18:47:03,037 running egg_info 2024-04-12T18:47:03,042 writing brainglobe_workflows.egg-info/PKG-INFO 2024-04-12T18:47:03,051 writing dependency_links to brainglobe_workflows.egg-info/dependency_links.txt 2024-04-12T18:47:03,053 writing entry points to brainglobe_workflows.egg-info/entry_points.txt 2024-04-12T18:47:03,058 writing requirements to brainglobe_workflows.egg-info/requires.txt 2024-04-12T18:47:03,059 writing top-level names to brainglobe_workflows.egg-info/top_level.txt 2024-04-12T18:47:03,097 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-12T18:47:03,100 reading manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-04-12T18:47:03,103 reading manifest template 'MANIFEST.in' 2024-04-12T18:47:03,104 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-04-12T18:47:03,105 warning: no previously-included files found matching '*.yaml' 2024-04-12T18:47:03,106 warning: no previously-included files found matching '*.yml' 2024-04-12T18:47:03,106 warning: no previously-included files found matching 'Dockerfile' 2024-04-12T18:47:03,107 warning: no previously-included files found matching '*.ini' 2024-04-12T18:47:03,116 warning: no previously-included files matching '*' found under directory 'benchmarks/results' 2024-04-12T18:47:03,117 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-04-12T18:47:03,118 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-04-12T18:47:03,122 warning: no files found matching '*.pxd' anywhere in distribution 2024-04-12T18:47:03,123 no previously-included directories found matching 'docs' 2024-04-12T18:47:03,123 no previously-included directories found matching 'tests' 2024-04-12T18:47:03,124 no previously-included directories found matching 'resources' 2024-04-12T18:47:03,125 no previously-included directories found matching '.github' 2024-04-12T18:47:03,125 no previously-included directories found matching '.tox' 2024-04-12T18:47:03,126 adding license file 'LICENSE' 2024-04-12T18:47:03,128 writing manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-04-12T18:47:03,252 Getting requirements to build wheel: finished with status 'done' 2024-04-12T18:47:03,267 Created temporary directory: /tmp/pip-modern-metadata-gqlqvlr3 2024-04-12T18:47:03,270 Preparing metadata (pyproject.toml): started 2024-04-12T18:47:03,271 Running command Preparing metadata (pyproject.toml) 2024-04-12T18:47:04,140 running dist_info 2024-04-12T18:47:04,146 creating /tmp/pip-modern-metadata-gqlqvlr3/brainglobe_workflows.egg-info 2024-04-12T18:47:04,151 writing /tmp/pip-modern-metadata-gqlqvlr3/brainglobe_workflows.egg-info/PKG-INFO 2024-04-12T18:47:04,161 writing dependency_links to /tmp/pip-modern-metadata-gqlqvlr3/brainglobe_workflows.egg-info/dependency_links.txt 2024-04-12T18:47:04,162 writing entry points to /tmp/pip-modern-metadata-gqlqvlr3/brainglobe_workflows.egg-info/entry_points.txt 2024-04-12T18:47:04,166 writing requirements to /tmp/pip-modern-metadata-gqlqvlr3/brainglobe_workflows.egg-info/requires.txt 2024-04-12T18:47:04,167 writing top-level names to /tmp/pip-modern-metadata-gqlqvlr3/brainglobe_workflows.egg-info/top_level.txt 2024-04-12T18:47:04,169 writing manifest file '/tmp/pip-modern-metadata-gqlqvlr3/brainglobe_workflows.egg-info/SOURCES.txt' 2024-04-12T18:47:04,202 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-12T18:47:04,206 reading manifest file '/tmp/pip-modern-metadata-gqlqvlr3/brainglobe_workflows.egg-info/SOURCES.txt' 2024-04-12T18:47:04,208 reading manifest template 'MANIFEST.in' 2024-04-12T18:47:04,209 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-04-12T18:47:04,210 warning: no previously-included files found matching '*.yaml' 2024-04-12T18:47:04,210 warning: no previously-included files found matching '*.yml' 2024-04-12T18:47:04,211 warning: no previously-included files found matching 'Dockerfile' 2024-04-12T18:47:04,211 warning: no previously-included files found matching '*.ini' 2024-04-12T18:47:04,219 warning: no previously-included files matching '*' found under directory 'benchmarks/results' 2024-04-12T18:47:04,220 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-04-12T18:47:04,221 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-04-12T18:47:04,225 warning: no files found matching '*.pxd' anywhere in distribution 2024-04-12T18:47:04,226 no previously-included directories found matching 'docs' 2024-04-12T18:47:04,226 no previously-included directories found matching 'tests' 2024-04-12T18:47:04,227 no previously-included directories found matching 'resources' 2024-04-12T18:47:04,228 no previously-included directories found matching '.github' 2024-04-12T18:47:04,228 no previously-included directories found matching '.tox' 2024-04-12T18:47:04,229 adding license file 'LICENSE' 2024-04-12T18:47:04,230 writing manifest file '/tmp/pip-modern-metadata-gqlqvlr3/brainglobe_workflows.egg-info/SOURCES.txt' 2024-04-12T18:47:04,231 creating '/tmp/pip-modern-metadata-gqlqvlr3/brainglobe_workflows-1.1.5.dist-info' 2024-04-12T18:47:04,402 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-12T18:47:04,408 Source in /tmp/pip-wheel-99hhlpjt/brainglobe-workflows_c33deda97d7c4c8796c3138e95b77424 has version 1.1.5, which satisfies requirement brainglobe-workflows==1.1.5 from https://files.pythonhosted.org/packages/d9/8f/ec82f41a099d5a50a5b917e0b4a087b195b1ade5a250500fe17428bfb2cf/brainglobe_workflows-1.1.5.tar.gz 2024-04-12T18:47:04,409 Removed brainglobe-workflows==1.1.5 from https://files.pythonhosted.org/packages/d9/8f/ec82f41a099d5a50a5b917e0b4a087b195b1ade5a250500fe17428bfb2cf/brainglobe_workflows-1.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-5x4p1bx9' 2024-04-12T18:47:04,416 Created temporary directory: /tmp/pip-unpack-dir7wjmm 2024-04-12T18:47:04,417 Created temporary directory: /tmp/pip-unpack-b0bsig_c 2024-04-12T18:47:04,478 Building wheels for collected packages: brainglobe-workflows 2024-04-12T18:47:04,483 Created temporary directory: /tmp/pip-wheel-r_s9d9ut 2024-04-12T18:47:04,484 Destination directory: /tmp/pip-wheel-r_s9d9ut 2024-04-12T18:47:04,486 Building wheel for brainglobe-workflows (pyproject.toml): started 2024-04-12T18:47:04,487 Running command Building wheel for brainglobe-workflows (pyproject.toml) 2024-04-12T18:47:05,333 running bdist_wheel 2024-04-12T18:47:05,356 running build 2024-04-12T18:47:05,357 running build_py 2024-04-12T18:47:05,363 creating build 2024-04-12T18:47:05,363 creating build/lib 2024-04-12T18:47:05,364 creating build/lib/brainglobe_workflows 2024-04-12T18:47:05,365 copying brainglobe_workflows/__init__.py -> build/lib/brainglobe_workflows 2024-04-12T18:47:05,367 copying brainglobe_workflows/utils.py -> build/lib/brainglobe_workflows 2024-04-12T18:47:05,369 running egg_info 2024-04-12T18:47:05,374 writing brainglobe_workflows.egg-info/PKG-INFO 2024-04-12T18:47:05,383 writing dependency_links to brainglobe_workflows.egg-info/dependency_links.txt 2024-04-12T18:47:05,384 writing entry points to brainglobe_workflows.egg-info/entry_points.txt 2024-04-12T18:47:05,389 writing requirements to brainglobe_workflows.egg-info/requires.txt 2024-04-12T18:47:05,390 writing top-level names to brainglobe_workflows.egg-info/top_level.txt 2024-04-12T18:47:05,417 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-12T18:47:05,420 reading manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-04-12T18:47:05,422 reading manifest template 'MANIFEST.in' 2024-04-12T18:47:05,423 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-04-12T18:47:05,424 warning: no previously-included files found matching '*.yaml' 2024-04-12T18:47:05,425 warning: no previously-included files found matching '*.yml' 2024-04-12T18:47:05,425 warning: no previously-included files found matching 'Dockerfile' 2024-04-12T18:47:05,426 warning: no previously-included files found matching '*.ini' 2024-04-12T18:47:05,434 warning: no previously-included files matching '*' found under directory 'benchmarks/results' 2024-04-12T18:47:05,435 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-04-12T18:47:05,435 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-04-12T18:47:05,442 warning: no files found matching '*.pxd' anywhere in distribution 2024-04-12T18:47:05,442 no previously-included directories found matching 'docs' 2024-04-12T18:47:05,443 no previously-included directories found matching 'tests' 2024-04-12T18:47:05,444 no previously-included directories found matching 'resources' 2024-04-12T18:47:05,444 no previously-included directories found matching '.github' 2024-04-12T18:47:05,445 no previously-included directories found matching '.tox' 2024-04-12T18:47:05,445 adding license file 'LICENSE' 2024-04-12T18:47:05,447 writing manifest file 'brainglobe_workflows.egg-info/SOURCES.txt' 2024-04-12T18:47:05,450 /tmp/pip-build-env-99kz54ia/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.brainmapper' is absent from the `packages` configuration. 2024-04-12T18:47:05,450 !! 2024-04-12T18:47:05,452 ******************************************************************************** 2024-04-12T18:47:05,452 ############################ 2024-04-12T18:47:05,453 # Package would be ignored # 2024-04-12T18:47:05,453 ############################ 2024-04-12T18:47:05,454 Python recognizes 'brainglobe_workflows.brainmapper' as an importable package[^1], 2024-04-12T18:47:05,455 but it is absent from setuptools' `packages` configuration. 2024-04-12T18:47:05,456 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-12T18:47:05,456 package, please make sure that 'brainglobe_workflows.brainmapper' is explicitly added 2024-04-12T18:47:05,457 to the `packages` configuration field. 2024-04-12T18:47:05,458 Alternatively, you can also rely on setuptools' discovery methods 2024-04-12T18:47:05,459 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-12T18:47:05,459 instead of `find_packages(...)`/`find:`). 2024-04-12T18:47:05,460 You can read more about "package discovery" on setuptools documentation page: 2024-04-12T18:47:05,461 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-12T18:47:05,462 If you don't want 'brainglobe_workflows.brainmapper' to be distributed and are 2024-04-12T18:47:05,462 already explicitly excluding 'brainglobe_workflows.brainmapper' via 2024-04-12T18:47:05,463 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-12T18:47:05,463 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-12T18:47:05,464 combination with a more fine grained `package-data` configuration. 2024-04-12T18:47:05,465 You can read more about "package data files" on setuptools documentation page: 2024-04-12T18:47:05,466 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-12T18:47:05,467 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-12T18:47:05,468 even if it does not contain any `.py` files. 2024-04-12T18:47:05,468 On the other hand, currently there is no concept of package data 2024-04-12T18:47:05,469 directory, all directories are treated like packages. 2024-04-12T18:47:05,469 ******************************************************************************** 2024-04-12T18:47:05,470 !! 2024-04-12T18:47:05,471 check.warn(importable) 2024-04-12T18:47:05,471 /tmp/pip-build-env-99kz54ia/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.cellfinder_core' is absent from the `packages` configuration. 2024-04-12T18:47:05,472 !! 2024-04-12T18:47:05,473 ******************************************************************************** 2024-04-12T18:47:05,474 ############################ 2024-04-12T18:47:05,474 # Package would be ignored # 2024-04-12T18:47:05,475 ############################ 2024-04-12T18:47:05,475 Python recognizes 'brainglobe_workflows.cellfinder_core' as an importable package[^1], 2024-04-12T18:47:05,476 but it is absent from setuptools' `packages` configuration. 2024-04-12T18:47:05,477 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-12T18:47:05,477 package, please make sure that 'brainglobe_workflows.cellfinder_core' is explicitly added 2024-04-12T18:47:05,478 to the `packages` configuration field. 2024-04-12T18:47:05,479 Alternatively, you can also rely on setuptools' discovery methods 2024-04-12T18:47:05,480 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-12T18:47:05,481 instead of `find_packages(...)`/`find:`). 2024-04-12T18:47:05,482 You can read more about "package discovery" on setuptools documentation page: 2024-04-12T18:47:05,483 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-12T18:47:05,484 If you don't want 'brainglobe_workflows.cellfinder_core' to be distributed and are 2024-04-12T18:47:05,485 already explicitly excluding 'brainglobe_workflows.cellfinder_core' via 2024-04-12T18:47:05,486 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-12T18:47:05,486 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-12T18:47:05,487 combination with a more fine grained `package-data` configuration. 2024-04-12T18:47:05,488 You can read more about "package data files" on setuptools documentation page: 2024-04-12T18:47:05,489 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-12T18:47:05,491 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-12T18:47:05,491 even if it does not contain any `.py` files. 2024-04-12T18:47:05,492 On the other hand, currently there is no concept of package data 2024-04-12T18:47:05,492 directory, all directories are treated like packages. 2024-04-12T18:47:05,493 ******************************************************************************** 2024-04-12T18:47:05,494 !! 2024-04-12T18:47:05,494 check.warn(importable) 2024-04-12T18:47:05,495 /tmp/pip-build-env-99kz54ia/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.configs' is absent from the `packages` configuration. 2024-04-12T18:47:05,495 !! 2024-04-12T18:47:05,496 ******************************************************************************** 2024-04-12T18:47:05,497 ############################ 2024-04-12T18:47:05,497 # Package would be ignored # 2024-04-12T18:47:05,497 ############################ 2024-04-12T18:47:05,498 Python recognizes 'brainglobe_workflows.configs' as an importable package[^1], 2024-04-12T18:47:05,498 but it is absent from setuptools' `packages` configuration. 2024-04-12T18:47:05,499 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-12T18:47:05,500 package, please make sure that 'brainglobe_workflows.configs' is explicitly added 2024-04-12T18:47:05,500 to the `packages` configuration field. 2024-04-12T18:47:05,501 Alternatively, you can also rely on setuptools' discovery methods 2024-04-12T18:47:05,502 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-12T18:47:05,502 instead of `find_packages(...)`/`find:`). 2024-04-12T18:47:05,503 You can read more about "package discovery" on setuptools documentation page: 2024-04-12T18:47:05,505 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-12T18:47:05,506 If you don't want 'brainglobe_workflows.configs' to be distributed and are 2024-04-12T18:47:05,506 already explicitly excluding 'brainglobe_workflows.configs' via 2024-04-12T18:47:05,507 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-12T18:47:05,508 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-12T18:47:05,508 combination with a more fine grained `package-data` configuration. 2024-04-12T18:47:05,509 You can read more about "package data files" on setuptools documentation page: 2024-04-12T18:47:05,510 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-12T18:47:05,512 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-12T18:47:05,512 even if it does not contain any `.py` files. 2024-04-12T18:47:05,513 On the other hand, currently there is no concept of package data 2024-04-12T18:47:05,513 directory, all directories are treated like packages. 2024-04-12T18:47:05,514 ******************************************************************************** 2024-04-12T18:47:05,515 !! 2024-04-12T18:47:05,516 check.warn(importable) 2024-04-12T18:47:05,516 creating build/lib/brainglobe_workflows/brainmapper 2024-04-12T18:47:05,517 copying brainglobe_workflows/brainmapper/__init__.py -> build/lib/brainglobe_workflows/brainmapper 2024-04-12T18:47:05,517 copying brainglobe_workflows/brainmapper/analyse.py -> build/lib/brainglobe_workflows/brainmapper 2024-04-12T18:47:05,518 copying brainglobe_workflows/brainmapper/main.py -> build/lib/brainglobe_workflows/brainmapper 2024-04-12T18:47:05,519 copying brainglobe_workflows/brainmapper/parser.py -> build/lib/brainglobe_workflows/brainmapper 2024-04-12T18:47:05,520 copying brainglobe_workflows/brainmapper/prep.py -> build/lib/brainglobe_workflows/brainmapper 2024-04-12T18:47:05,520 creating build/lib/brainglobe_workflows/cellfinder_core 2024-04-12T18:47:05,521 copying brainglobe_workflows/cellfinder_core/__init__.py -> build/lib/brainglobe_workflows/cellfinder_core 2024-04-12T18:47:05,521 copying brainglobe_workflows/cellfinder_core/cellfinder_core.py -> build/lib/brainglobe_workflows/cellfinder_core 2024-04-12T18:47:05,522 creating build/lib/brainglobe_workflows/configs 2024-04-12T18:47:05,522 copying brainglobe_workflows/configs/cellfinder.json -> build/lib/brainglobe_workflows/configs 2024-04-12T18:47:05,523 installing to build/bdist.linux-armv7l/wheel 2024-04-12T18:47:05,523 running install 2024-04-12T18:47:05,524 running install_lib 2024-04-12T18:47:05,526 creating build/bdist.linux-armv7l 2024-04-12T18:47:05,527 creating build/bdist.linux-armv7l/wheel 2024-04-12T18:47:05,529 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows 2024-04-12T18:47:05,530 copying build/lib/brainglobe_workflows/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows 2024-04-12T18:47:05,532 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder_core 2024-04-12T18:47:05,533 copying build/lib/brainglobe_workflows/cellfinder_core/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder_core 2024-04-12T18:47:05,535 copying build/lib/brainglobe_workflows/cellfinder_core/cellfinder_core.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder_core 2024-04-12T18:47:05,538 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/configs 2024-04-12T18:47:05,539 copying build/lib/brainglobe_workflows/configs/cellfinder.json -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/configs 2024-04-12T18:47:05,541 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-04-12T18:47:05,542 copying build/lib/brainglobe_workflows/brainmapper/parser.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-04-12T18:47:05,545 copying build/lib/brainglobe_workflows/brainmapper/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-04-12T18:47:05,546 copying build/lib/brainglobe_workflows/brainmapper/main.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-04-12T18:47:05,548 copying build/lib/brainglobe_workflows/brainmapper/prep.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-04-12T18:47:05,551 copying build/lib/brainglobe_workflows/brainmapper/analyse.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper 2024-04-12T18:47:05,553 copying build/lib/brainglobe_workflows/utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows 2024-04-12T18:47:05,555 running install_egg_info 2024-04-12T18:47:05,560 Copying brainglobe_workflows.egg-info to build/bdist.linux-armv7l/wheel/brainglobe_workflows-1.1.5-py3.11.egg-info 2024-04-12T18:47:05,574 running install_scripts 2024-04-12T18:47:05,597 creating build/bdist.linux-armv7l/wheel/brainglobe_workflows-1.1.5.dist-info/WHEEL 2024-04-12T18:47:05,599 creating '/tmp/pip-wheel-r_s9d9ut/.tmp-sifu98ha/brainglobe_workflows-1.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-12T18:47:05,602 adding 'brainglobe_workflows/__init__.py' 2024-04-12T18:47:05,604 adding 'brainglobe_workflows/utils.py' 2024-04-12T18:47:05,606 adding 'brainglobe_workflows/brainmapper/__init__.py' 2024-04-12T18:47:05,607 adding 'brainglobe_workflows/brainmapper/analyse.py' 2024-04-12T18:47:05,609 adding 'brainglobe_workflows/brainmapper/main.py' 2024-04-12T18:47:05,611 adding 'brainglobe_workflows/brainmapper/parser.py' 2024-04-12T18:47:05,614 adding 'brainglobe_workflows/brainmapper/prep.py' 2024-04-12T18:47:05,616 adding 'brainglobe_workflows/cellfinder_core/__init__.py' 2024-04-12T18:47:05,618 adding 'brainglobe_workflows/cellfinder_core/cellfinder_core.py' 2024-04-12T18:47:05,620 adding 'brainglobe_workflows/configs/cellfinder.json' 2024-04-12T18:47:05,622 adding 'brainglobe_workflows-1.1.5.dist-info/LICENSE' 2024-04-12T18:47:05,624 adding 'brainglobe_workflows-1.1.5.dist-info/METADATA' 2024-04-12T18:47:05,625 adding 'brainglobe_workflows-1.1.5.dist-info/WHEEL' 2024-04-12T18:47:05,626 adding 'brainglobe_workflows-1.1.5.dist-info/entry_points.txt' 2024-04-12T18:47:05,627 adding 'brainglobe_workflows-1.1.5.dist-info/top_level.txt' 2024-04-12T18:47:05,628 adding 'brainglobe_workflows-1.1.5.dist-info/RECORD' 2024-04-12T18:47:05,629 removing build/bdist.linux-armv7l/wheel 2024-04-12T18:47:05,760 Building wheel for brainglobe-workflows (pyproject.toml): finished with status 'done' 2024-04-12T18:47:05,766 Created wheel for brainglobe-workflows: filename=brainglobe_workflows-1.1.5-py3-none-any.whl size=23374 sha256=46143420cf6a1c1a1498c0abbbf2e99cc2ea9ed0775449c490621bf070e8416b 2024-04-12T18:47:05,767 Stored in directory: /tmp/pip-ephem-wheel-cache-a76s28ic/wheels/03/46/f6/1bfd8a963f3814d9d30d49263a608a19297dc05480e1b10c1c 2024-04-12T18:47:05,780 Successfully built brainglobe-workflows 2024-04-12T18:47:05,784 Removed build tracker: '/tmp/pip-build-tracker-5x4p1bx9'