2024-04-13T19:18:49,825 Created temporary directory: /tmp/pip-build-tracker-ke5ek6ff 2024-04-13T19:18:49,828 Initialized build tracking at /tmp/pip-build-tracker-ke5ek6ff 2024-04-13T19:18:49,829 Created build tracker: /tmp/pip-build-tracker-ke5ek6ff 2024-04-13T19:18:49,829 Entered build tracker: /tmp/pip-build-tracker-ke5ek6ff 2024-04-13T19:18:49,830 Created temporary directory: /tmp/pip-wheel-mqq80nqr 2024-04-13T19:18:49,840 Created temporary directory: /tmp/pip-ephem-wheel-cache-7dtd1c65 2024-04-13T19:18:49,895 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-13T19:18:49,909 2 location(s) to search for versions of gffutils: 2024-04-13T19:18:49,909 * https://pypi.org/simple/gffutils/ 2024-04-13T19:18:49,909 * https://www.piwheels.org/simple/gffutils/ 2024-04-13T19:18:49,911 Fetching project page and analyzing links: https://pypi.org/simple/gffutils/ 2024-04-13T19:18:49,911 Getting page https://pypi.org/simple/gffutils/ 2024-04-13T19:18:49,915 Found index url https://pypi.org/simple/ 2024-04-13T19:18:50,026 Fetched page https://pypi.org/simple/gffutils/ as application/vnd.pypi.simple.v1+json 2024-04-13T19:18:50,038 Found link https://files.pythonhosted.org/packages/d9/a5/3d6f46b049c1091efcc6f6d29e9d39470f5f8d62e17cdb6fd331526fd71b/gffutils-0.0.0.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.0.0 2024-04-13T19:18:50,039 Found link https://files.pythonhosted.org/packages/86/64/6dab23af4bfb4052c66a8f1f174c95d59f8e797220bfe19dfd11122538d9/gffutils-0.7.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.7 2024-04-13T19:18:50,040 Found link https://files.pythonhosted.org/packages/f9/6a/b2cf512d0772c220431fbab8465abdb2d730bd6ac22a6816e023afa675b8/gffutils-0.8.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8 2024-04-13T19:18:50,041 Found link https://files.pythonhosted.org/packages/07/52/5d10ce38562ed0b8468697e09f8898b45df543d5e9fe5b6c5a4a5aca6685/gffutils-0.8.1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.1 2024-04-13T19:18:50,041 Found link https://files.pythonhosted.org/packages/eb/89/e2e0c90b9be07b3ab650b7474971fbf0b1e5d4d29a2b03c676ffad9501bb/gffutils-0.8.2.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.2 2024-04-13T19:18:50,042 Found link https://files.pythonhosted.org/packages/3e/2b/1a5d72b043c024b86d573ceab15b464acd0638b912cd30ddce71e7d93112/gffutils-0.8.3.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.3 2024-04-13T19:18:50,043 Found link https://files.pythonhosted.org/packages/8d/00/6f4f59d109bbc421ad59faf64eb31cb90858a4a316c31eb49e09467f4a93/gffutils-0.8.3.1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.3.1 2024-04-13T19:18:50,044 Found link https://files.pythonhosted.org/packages/d8/a3/487db49cf8b35dd17d6360f464d3524b369365e5bd7964ac32b33a6fabab/gffutils-0.8.4rc1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.4rc1 2024-04-13T19:18:50,044 Found link https://files.pythonhosted.org/packages/25/9d/97c58a9a602e41e2797747fd94b6bd4aa82331178a074c4da966030045ba/gffutils-0.8.5.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.5 2024-04-13T19:18:50,045 Found link https://files.pythonhosted.org/packages/21/b1/0ecce3b0304048241da7e830196aa50d62dfe9c9bdbf4fb48aebbf1d363e/gffutils-0.8.6.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.6 2024-04-13T19:18:50,046 Found link https://files.pythonhosted.org/packages/40/bc/85541d291c6da6570deed2988206bb322afb8d5ede1e72fd267c440a286d/gffutils-0.8.6.1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.6.1 2024-04-13T19:18:50,046 Found link https://files.pythonhosted.org/packages/d8/bf/b630f9a006d7380d79b344b41af548c73371844737f221a9d4a59d57f91e/gffutils-0.8.7.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.7 2024-04-13T19:18:50,047 Found link https://files.pythonhosted.org/packages/a7/fa/3d8cd13f58540098f5efb3ec7dd33d1bb6a27ee06e377e1d6a2419b4be25/gffutils-0.8.7.1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.7.1 2024-04-13T19:18:50,048 Found link https://files.pythonhosted.org/packages/b4/ea/54ca403a8d471849606fb432b9afcf73c8c5105ea2dd87b8d38bd5217c5a/gffutils-0.9.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.9 2024-04-13T19:18:50,048 Found link https://files.pythonhosted.org/packages/f0/cb/bbbde7e179aa5efe13f51afbef13a85a53632d94fc97755a2819d4d251c6/gffutils-0.10.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.10 2024-04-13T19:18:50,049 Found link https://files.pythonhosted.org/packages/87/d6/f893f14fd6cf1c9e758259f6e0f9ba1ae03370988d8f1a3ea8d790ca5b06/gffutils-0.10.1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.10.1 2024-04-13T19:18:50,050 Found link https://files.pythonhosted.org/packages/eb/38/8f8f917d37175dea194c12d7c625d82e0b039169afe5c08f3609fbef5f9c/gffutils-0.11.0.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.11.0 2024-04-13T19:18:50,050 Found link https://files.pythonhosted.org/packages/41/5e/e55e6b0e13467b73680ee8206082294366e0bf194726ee6923517886145a/gffutils-0.11.1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.11.1 2024-04-13T19:18:50,051 Skipping link: No binaries permitted for gffutils: https://files.pythonhosted.org/packages/b2/0a/eddd2f6667198100adb8fa6f983db66022e3c375c40d19795a3de05df986/gffutils-0.12-py3-none-any.whl (from https://pypi.org/simple/gffutils/) 2024-04-13T19:18:50,052 Found link https://files.pythonhosted.org/packages/94/8a/692d9022dc2edbfd3aa3d1b82924d7743c62dcfda2b800d4caf948fdc78c/gffutils-0.12.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.12 2024-04-13T19:18:50,052 Skipping link: No binaries permitted for gffutils: https://files.pythonhosted.org/packages/38/d0/4f34f9889ed159db2bcd70014dfe08fcad9d34db528a19a73754790cc21f/gffutils-0.13-py3-none-any.whl (from https://pypi.org/simple/gffutils/) 2024-04-13T19:18:50,053 Found link https://files.pythonhosted.org/packages/66/51/998a14434a597162006385575373c6be06cc4c52caa67d0be901a82ee761/gffutils-0.13.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.13 2024-04-13T19:18:50,054 Fetching project page and analyzing links: https://www.piwheels.org/simple/gffutils/ 2024-04-13T19:18:50,054 Getting page https://www.piwheels.org/simple/gffutils/ 2024-04-13T19:18:50,057 Found index url https://www.piwheels.org/simple/ 2024-04-13T19:18:50,396 Fetched page https://www.piwheels.org/simple/gffutils/ as text/html 2024-04-13T19:18:50,408 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.12-py3-none-any.whl#sha256=50cd991eb06617b36786baf3a81e83df18eeb7155224754c85d85f53b88b7119 (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,409 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.11.1-py3-none-any.whl#sha256=4cc48c421d677ade7419a12cf3d970d2d3be2891fa35fa5b3a54c5f97dbb037d (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,410 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.11.0-py3-none-any.whl#sha256=17cb6c18791ad6fac6a243fdacad9c551cd32d03d07717e740048b9e3c04d901 (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,410 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.10.1-py3-none-any.whl#sha256=5ef49126fc2ce3888acab72b8de390a1851ee39c7e97c44e04a3bd67c2d785cb (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,411 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.10-py3-none-any.whl#sha256=a0a5c59b160c35349aa71feadf2a5bd0f82acf3372cc5f137077c3d94babb938 (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,411 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.9-py3-none-any.whl#sha256=467fd84f30d0f2fca1ef1197c9794c050ca041b3c89fc2f717ff1b775ee263c7 (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,412 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.7.1-py3-none-any.whl#sha256=9373da862b66f89436246505d76107af3bdbbbe208bd387558c982cab9bb7a44 (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,412 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.7-py3-none-any.whl#sha256=4bee88653f846fd491426bc5b4474b346233c8224cf084be5e088b80a3e20864 (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,413 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.6.1-py3-none-any.whl#sha256=8dfce15146e0d0ae1ee7353676caa181d8728b9b2b6c53f9738ff539ba96e12e (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,413 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.6-py3-none-any.whl#sha256=fb0b3a2418537eacfd289c93c9e1f97e0179a43d1fefdcb26fa7074a236665f9 (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,414 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.5-py3-none-any.whl#sha256=efae4ef85e8f8d071bf4cdec1447ce2fac13c6453594d39c29aa351f90af43ab (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,414 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.4rc1-py3-none-any.whl#sha256=f5b02338e4b604e57f22582da42962d0e7d27f792e591c306530d116d2c1b7a4 (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,415 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.3.1-py3-none-any.whl#sha256=f9c7e10bac2007279e1fc859269bf697895138b08cd273a688044d6cc8d9e428 (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,415 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.3-py3-none-any.whl#sha256=1ceff7023c903f5e86de91e0c4ec4680ef3e7bef5547c96af0636f144f435c3d (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,416 Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.2-py3-none-any.whl#sha256=948a8856b9496f8a82cfa9fd9210b9ce6956396536fc506a67f84586faf94ce9 (from https://www.piwheels.org/simple/gffutils/) 2024-04-13T19:18:50,416 Skipping link: not a file: https://www.piwheels.org/simple/gffutils/ 2024-04-13T19:18:50,417 Skipping link: not a file: https://pypi.org/simple/gffutils/ 2024-04-13T19:18:50,456 Given no hashes to check 1 links for project 'gffutils': discarding no candidates 2024-04-13T19:18:50,487 Collecting gffutils==0.13 2024-04-13T19:18:50,491 Created temporary directory: /tmp/pip-unpack-7wxnpkx5 2024-04-13T19:18:50,589 Downloading gffutils-0.13.tar.gz (1.6 MB) 2024-04-13T19:18:52,321 Added gffutils==0.13 from https://files.pythonhosted.org/packages/66/51/998a14434a597162006385575373c6be06cc4c52caa67d0be901a82ee761/gffutils-0.13.tar.gz to build tracker '/tmp/pip-build-tracker-ke5ek6ff' 2024-04-13T19:18:52,327 Running setup.py (path:/tmp/pip-wheel-mqq80nqr/gffutils_8ef1472639a94cd2afa44be6c807697e/setup.py) egg_info for package gffutils 2024-04-13T19:18:52,328 Created temporary directory: /tmp/pip-pip-egg-info-r8h6fcd1 2024-04-13T19:18:52,329 Preparing metadata (setup.py): started 2024-04-13T19:18:52,331 Running command python setup.py egg_info 2024-04-13T19:18:54,963 running egg_info 2024-04-13T19:18:54,967 creating /tmp/pip-pip-egg-info-r8h6fcd1/gffutils.egg-info 2024-04-13T19:18:55,029 writing /tmp/pip-pip-egg-info-r8h6fcd1/gffutils.egg-info/PKG-INFO 2024-04-13T19:18:55,034 writing dependency_links to /tmp/pip-pip-egg-info-r8h6fcd1/gffutils.egg-info/dependency_links.txt 2024-04-13T19:18:55,038 writing requirements to /tmp/pip-pip-egg-info-r8h6fcd1/gffutils.egg-info/requires.txt 2024-04-13T19:18:55,040 writing top-level names to /tmp/pip-pip-egg-info-r8h6fcd1/gffutils.egg-info/top_level.txt 2024-04-13T19:18:55,043 writing manifest file '/tmp/pip-pip-egg-info-r8h6fcd1/gffutils.egg-info/SOURCES.txt' 2024-04-13T19:18:55,317 reading manifest file '/tmp/pip-pip-egg-info-r8h6fcd1/gffutils.egg-info/SOURCES.txt' 2024-04-13T19:18:55,320 reading manifest template 'MANIFEST.in' 2024-04-13T19:18:55,323 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:510: InformationOnly: Normalizing ' 0.13' to '0.13' 2024-04-13T19:18:55,324 self._validate_version(self.metadata.version) 2024-04-13T19:18:55,324 warning: no files found matching '*.rst' under directory 'docs/source' 2024-04-13T19:18:55,324 warning: no files found matching '*.py' under directory 'docs/source' 2024-04-13T19:18:55,325 warning: no files found matching '*' under directory 'docs/source/images' 2024-04-13T19:18:55,328 warning: no files found matching 'docs/Makefile' 2024-04-13T19:18:55,328 warning: no files found matching 'docs/make.bat' 2024-04-13T19:18:55,332 warning: no files found matching 'gffutils/test/data/__init__.py' 2024-04-13T19:18:55,334 warning: no files found matching 'gffutils/test/data/t.py' 2024-04-13T19:18:55,336 adding license file 'LICENSE' 2024-04-13T19:18:55,348 writing manifest file '/tmp/pip-pip-egg-info-r8h6fcd1/gffutils.egg-info/SOURCES.txt' 2024-04-13T19:18:55,515 Preparing metadata (setup.py): finished with status 'done' 2024-04-13T19:18:55,528 Source in /tmp/pip-wheel-mqq80nqr/gffutils_8ef1472639a94cd2afa44be6c807697e has version 0.13, which satisfies requirement gffutils==0.13 from https://files.pythonhosted.org/packages/66/51/998a14434a597162006385575373c6be06cc4c52caa67d0be901a82ee761/gffutils-0.13.tar.gz 2024-04-13T19:18:55,529 Removed gffutils==0.13 from https://files.pythonhosted.org/packages/66/51/998a14434a597162006385575373c6be06cc4c52caa67d0be901a82ee761/gffutils-0.13.tar.gz from build tracker '/tmp/pip-build-tracker-ke5ek6ff' 2024-04-13T19:18:55,540 Created temporary directory: /tmp/pip-unpack-ecu96b4c 2024-04-13T19:18:55,542 Created temporary directory: /tmp/pip-unpack-gscngzcw 2024-04-13T19:18:55,560 Building wheels for collected packages: gffutils 2024-04-13T19:18:55,568 Created temporary directory: /tmp/pip-wheel-uyq27jw7 2024-04-13T19:18:55,569 Building wheel for gffutils (setup.py): started 2024-04-13T19:18:55,571 Destination directory: /tmp/pip-wheel-uyq27jw7 2024-04-13T19:18:55,571 Running command python setup.py bdist_wheel 2024-04-13T19:18:57,993 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:510: InformationOnly: Normalizing ' 0.13' to '0.13' 2024-04-13T19:18:57,994 self._validate_version(self.metadata.version) 2024-04-13T19:18:58,073 running bdist_wheel 2024-04-13T19:18:58,242 running build 2024-04-13T19:18:58,243 running build_py 2024-04-13T19:18:58,308 creating build 2024-04-13T19:18:58,309 creating build/lib 2024-04-13T19:18:58,310 creating build/lib/gffutils 2024-04-13T19:18:58,312 copying gffutils/inspect.py -> build/lib/gffutils 2024-04-13T19:18:58,316 copying gffutils/biopython_integration.py -> build/lib/gffutils 2024-04-13T19:18:58,320 copying gffutils/bins.py -> build/lib/gffutils 2024-04-13T19:18:58,324 copying gffutils/constants.py -> build/lib/gffutils 2024-04-13T19:18:58,328 copying gffutils/iterators.py -> build/lib/gffutils 2024-04-13T19:18:58,332 copying gffutils/interface.py -> build/lib/gffutils 2024-04-13T19:18:58,340 copying gffutils/__init__.py -> build/lib/gffutils 2024-04-13T19:18:58,344 copying gffutils/version.py -> build/lib/gffutils 2024-04-13T19:18:58,347 copying gffutils/create.py -> build/lib/gffutils 2024-04-13T19:18:58,354 copying gffutils/attributes.py -> build/lib/gffutils 2024-04-13T19:18:58,358 copying gffutils/convert.py -> build/lib/gffutils 2024-04-13T19:18:58,361 copying gffutils/pybedtools_integration.py -> build/lib/gffutils 2024-04-13T19:18:58,366 copying gffutils/gffwriter.py -> build/lib/gffutils 2024-04-13T19:18:58,370 copying gffutils/feature.py -> build/lib/gffutils 2024-04-13T19:18:58,375 copying gffutils/helpers.py -> build/lib/gffutils 2024-04-13T19:18:58,380 copying gffutils/exceptions.py -> build/lib/gffutils 2024-04-13T19:18:58,383 copying gffutils/parser.py -> build/lib/gffutils 2024-04-13T19:18:58,387 copying gffutils/merge_criteria.py -> build/lib/gffutils 2024-04-13T19:18:58,392 creating build/lib/gffutils/scripts 2024-04-13T19:18:58,394 copying gffutils/scripts/gffutils-flybase-convert.py -> build/lib/gffutils/scripts 2024-04-13T19:18:58,401 creating build/lib/gffutils/test 2024-04-13T19:18:58,403 copying gffutils/test/test_merge.py -> build/lib/gffutils/test 2024-04-13T19:18:58,408 copying gffutils/test/test_cli.py -> build/lib/gffutils/test 2024-04-13T19:18:58,412 copying gffutils/test/synth_test_base.py -> build/lib/gffutils/test 2024-04-13T19:18:58,415 copying gffutils/test/expected.py -> build/lib/gffutils/test 2024-04-13T19:18:58,420 copying gffutils/test/attr_test_cases.py -> build/lib/gffutils/test 2024-04-13T19:18:58,424 copying gffutils/test/__init__.py -> build/lib/gffutils/test 2024-04-13T19:18:58,427 copying gffutils/test/helpers_test.py -> build/lib/gffutils/test 2024-04-13T19:18:58,430 copying gffutils/test/test_merge_all.py -> build/lib/gffutils/test 2024-04-13T19:18:58,434 copying gffutils/test/performance_evaluation.py -> build/lib/gffutils/test 2024-04-13T19:18:58,438 copying gffutils/test/test_biopython_integration.py -> build/lib/gffutils/test 2024-04-13T19:18:58,442 copying gffutils/test/parser_test.py -> build/lib/gffutils/test 2024-04-13T19:18:58,446 copying gffutils/test/feature_test.py -> build/lib/gffutils/test 2024-04-13T19:18:58,450 copying gffutils/test/conftest.py -> build/lib/gffutils/test 2024-04-13T19:18:58,454 copying gffutils/test/test_issues.py -> build/lib/gffutils/test 2024-04-13T19:18:58,460 copying gffutils/test/test_iterators.py -> build/lib/gffutils/test 2024-04-13T19:18:58,463 copying gffutils/test/test_1.py -> build/lib/gffutils/test 2024-04-13T19:18:58,487 creating build/lib/gffutils/test/data 2024-04-13T19:18:58,489 copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:58,494 copying gffutils/test/data/ensembl_gtf.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:58,499 copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:58,508 copying gffutils/test/data/glimmer_nokeyval.gff3 -> build/lib/gffutils/test/data 2024-04-13T19:18:58,512 copying gffutils/test/data/issue174.gtf -> build/lib/gffutils/test/data 2024-04-13T19:18:58,517 copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:58,526 copying gffutils/test/data/F3-unique-3.v2.gff -> build/lib/gffutils/test/data 2024-04-13T19:18:58,532 copying gffutils/test/data/gms2_example.gff3 -> build/lib/gffutils/test/data 2024-04-13T19:18:58,536 copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:58,546 copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> build/lib/gffutils/test/data 2024-04-13T19:18:58,940 copying gffutils/test/data/hybrid1.gff3 -> build/lib/gffutils/test/data 2024-04-13T19:18:58,944 copying gffutils/test/data/FBgn0031208.gff -> build/lib/gffutils/test/data 2024-04-13T19:18:58,948 copying gffutils/test/data/gff_example1.gff3.gz -> build/lib/gffutils/test/data 2024-04-13T19:18:58,952 copying gffutils/test/data/wormbase_gff2.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:58,957 copying gffutils/test/data/gencode-v19.gtf -> build/lib/gffutils/test/data 2024-04-13T19:18:58,962 copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:58,966 copying gffutils/test/data/keep-order-test.gtf -> build/lib/gffutils/test/data 2024-04-13T19:18:58,970 copying gffutils/test/data/unsanitized.gff -> build/lib/gffutils/test/data 2024-04-13T19:18:58,974 copying gffutils/test/data/FBgn0031208.gtf.db -> build/lib/gffutils/test/data 2024-04-13T19:18:58,982 copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:58,986 copying gffutils/test/data/mouse_extra_comma.gff3 -> build/lib/gffutils/test/data 2024-04-13T19:18:58,990 copying gffutils/test/data/wormbase_gff2_alt.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:58,994 copying gffutils/test/data/nonascii -> build/lib/gffutils/test/data 2024-04-13T19:18:58,998 copying gffutils/test/data/jgi_gff2.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:59,002 copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:59,010 copying gffutils/test/data/issue167.gff -> build/lib/gffutils/test/data 2024-04-13T19:18:59,014 copying gffutils/test/data/gencode.vM8.chromsizes.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:59,018 copying gffutils/test/data/synthetic.gff3 -> build/lib/gffutils/test/data 2024-04-13T19:18:59,022 copying gffutils/test/data/dm6-chr2L.fa.fai -> build/lib/gffutils/test/data 2024-04-13T19:18:59,026 copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> build/lib/gffutils/test/data 2024-04-13T19:18:59,030 copying gffutils/test/data/sharr.gtf -> build/lib/gffutils/test/data 2024-04-13T19:18:59,034 copying gffutils/test/data/gff_example1.gff3 -> build/lib/gffutils/test/data 2024-04-13T19:18:59,038 copying gffutils/test/data/keyval_sep_in_attrs.gff -> build/lib/gffutils/test/data 2024-04-13T19:18:59,042 copying gffutils/test/data/ncbi_gff3.txt -> build/lib/gffutils/test/data 2024-04-13T19:18:59,046 copying gffutils/test/data/issue_197.gff -> build/lib/gffutils/test/data 2024-04-13T19:18:59,050 copying gffutils/test/data/dm6-chr2L.fa -> build/lib/gffutils/test/data 2024-04-13T19:18:59,055 copying gffutils/test/data/FBgn0031208.gtf -> build/lib/gffutils/test/data 2024-04-13T19:18:59,060 copying gffutils/test/data/intro_docs_example.gff -> build/lib/gffutils/test/data 2024-04-13T19:18:59,064 copying gffutils/test/data/download-large-annotation-files.sh -> build/lib/gffutils/test/data 2024-04-13T19:18:59,068 copying gffutils/test/data/random-chr.gff -> build/lib/gffutils/test/data 2024-04-13T19:18:59,080 running build_scripts 2024-04-13T19:18:59,081 creating build/scripts-3.7 2024-04-13T19:18:59,084 copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.7 2024-04-13T19:18:59,087 changing mode of build/scripts-3.7/gffutils-cli from 644 to 755 2024-04-13T19:18:59,146 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-04-13T19:18:59,146 !! 2024-04-13T19:18:59,147 ******************************************************************************** 2024-04-13T19:18:59,147 Please avoid running ``setup.py`` directly. 2024-04-13T19:18:59,148 Instead, use pypa/build, pypa/installer or other 2024-04-13T19:18:59,148 standards-based tools. 2024-04-13T19:18:59,149 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-04-13T19:18:59,149 ******************************************************************************** 2024-04-13T19:18:59,150 !! 2024-04-13T19:18:59,150 self.initialize_options() 2024-04-13T19:18:59,203 installing to build/bdist.linux-armv7l/wheel 2024-04-13T19:18:59,203 running install 2024-04-13T19:18:59,265 running install_lib 2024-04-13T19:18:59,324 creating build/bdist.linux-armv7l 2024-04-13T19:18:59,325 creating build/bdist.linux-armv7l/wheel 2024-04-13T19:18:59,329 creating build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:18:59,331 copying build/lib/gffutils/inspect.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:18:59,336 copying build/lib/gffutils/biopython_integration.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:18:59,340 copying build/lib/gffutils/bins.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:18:59,346 creating build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,348 copying build/lib/gffutils/test/test_merge.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,353 copying build/lib/gffutils/test/test_cli.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,357 copying build/lib/gffutils/test/synth_test_base.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,360 copying build/lib/gffutils/test/expected.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,365 copying build/lib/gffutils/test/attr_test_cases.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,370 copying build/lib/gffutils/test/__init__.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,373 copying build/lib/gffutils/test/helpers_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,377 copying build/lib/gffutils/test/test_merge_all.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,381 copying build/lib/gffutils/test/performance_evaluation.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,385 copying build/lib/gffutils/test/test_biopython_integration.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,389 copying build/lib/gffutils/test/parser_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,394 copying build/lib/gffutils/test/feature_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,398 copying build/lib/gffutils/test/conftest.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,402 copying build/lib/gffutils/test/test_issues.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,407 copying build/lib/gffutils/test/test_iterators.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:18:59,413 creating build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,415 copying build/lib/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,421 copying build/lib/gffutils/test/data/ensembl_gtf.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,425 copying build/lib/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,434 copying build/lib/gffutils/test/data/glimmer_nokeyval.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,438 copying build/lib/gffutils/test/data/issue174.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,442 copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,452 copying build/lib/gffutils/test/data/F3-unique-3.v2.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,457 copying build/lib/gffutils/test/data/gms2_example.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,461 copying build/lib/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,471 copying build/lib/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,925 copying build/lib/gffutils/test/data/hybrid1.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,929 copying build/lib/gffutils/test/data/FBgn0031208.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,933 copying build/lib/gffutils/test/data/gff_example1.gff3.gz -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,938 copying build/lib/gffutils/test/data/wormbase_gff2.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,943 copying build/lib/gffutils/test/data/gencode-v19.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,947 copying build/lib/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,951 copying build/lib/gffutils/test/data/keep-order-test.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,954 copying build/lib/gffutils/test/data/unsanitized.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,958 copying build/lib/gffutils/test/data/FBgn0031208.gtf.db -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,965 copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,969 copying build/lib/gffutils/test/data/mouse_extra_comma.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,973 copying build/lib/gffutils/test/data/wormbase_gff2_alt.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,976 copying build/lib/gffutils/test/data/nonascii -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,981 copying build/lib/gffutils/test/data/jgi_gff2.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,985 copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,992 copying build/lib/gffutils/test/data/issue167.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:18:59,996 copying build/lib/gffutils/test/data/gencode.vM8.chromsizes.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,000 copying build/lib/gffutils/test/data/synthetic.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,003 copying build/lib/gffutils/test/data/dm6-chr2L.fa.fai -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,007 copying build/lib/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,010 copying build/lib/gffutils/test/data/sharr.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,014 copying build/lib/gffutils/test/data/gff_example1.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,018 copying build/lib/gffutils/test/data/keyval_sep_in_attrs.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,021 copying build/lib/gffutils/test/data/ncbi_gff3.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,025 copying build/lib/gffutils/test/data/issue_197.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,029 copying build/lib/gffutils/test/data/dm6-chr2L.fa -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,032 copying build/lib/gffutils/test/data/FBgn0031208.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,037 copying build/lib/gffutils/test/data/intro_docs_example.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,040 copying build/lib/gffutils/test/data/download-large-annotation-files.sh -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,044 copying build/lib/gffutils/test/data/random-chr.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2024-04-13T19:19:00,048 copying build/lib/gffutils/test/test_1.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2024-04-13T19:19:00,055 creating build/bdist.linux-armv7l/wheel/gffutils/scripts 2024-04-13T19:19:00,057 copying build/lib/gffutils/scripts/gffutils-flybase-convert.py -> build/bdist.linux-armv7l/wheel/gffutils/scripts 2024-04-13T19:19:00,061 copying build/lib/gffutils/constants.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,065 copying build/lib/gffutils/iterators.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,070 copying build/lib/gffutils/interface.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,078 copying build/lib/gffutils/__init__.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,082 copying build/lib/gffutils/version.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,085 copying build/lib/gffutils/create.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,093 copying build/lib/gffutils/attributes.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,096 copying build/lib/gffutils/convert.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,100 copying build/lib/gffutils/pybedtools_integration.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,104 copying build/lib/gffutils/gffwriter.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,109 copying build/lib/gffutils/feature.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,113 copying build/lib/gffutils/helpers.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,118 copying build/lib/gffutils/exceptions.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,122 copying build/lib/gffutils/parser.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,127 copying build/lib/gffutils/merge_criteria.py -> build/bdist.linux-armv7l/wheel/gffutils 2024-04-13T19:19:00,130 running install_egg_info 2024-04-13T19:19:00,267 running egg_info 2024-04-13T19:19:00,323 writing gffutils.egg-info/PKG-INFO 2024-04-13T19:19:00,326 writing dependency_links to gffutils.egg-info/dependency_links.txt 2024-04-13T19:19:00,330 writing requirements to gffutils.egg-info/requires.txt 2024-04-13T19:19:00,332 writing top-level names to gffutils.egg-info/top_level.txt 2024-04-13T19:19:00,413 reading manifest file 'gffutils.egg-info/SOURCES.txt' 2024-04-13T19:19:00,422 reading manifest template 'MANIFEST.in' 2024-04-13T19:19:00,424 warning: no files found matching '*.rst' under directory 'docs/source' 2024-04-13T19:19:00,425 warning: no files found matching '*.py' under directory 'docs/source' 2024-04-13T19:19:00,425 warning: no files found matching '*' under directory 'docs/source/images' 2024-04-13T19:19:00,428 warning: no files found matching 'docs/Makefile' 2024-04-13T19:19:00,429 warning: no files found matching 'docs/make.bat' 2024-04-13T19:19:00,432 warning: no files found matching 'gffutils/test/data/__init__.py' 2024-04-13T19:19:00,434 warning: no files found matching 'gffutils/test/data/t.py' 2024-04-13T19:19:00,435 adding license file 'LICENSE' 2024-04-13T19:19:00,451 writing manifest file 'gffutils.egg-info/SOURCES.txt' 2024-04-13T19:19:00,453 Copying gffutils.egg-info to build/bdist.linux-armv7l/wheel/gffutils-0.13-py3.7.egg-info 2024-04-13T19:19:00,473 running install_scripts 2024-04-13T19:19:00,475 creating build/bdist.linux-armv7l/wheel/gffutils-0.13.data 2024-04-13T19:19:00,476 creating build/bdist.linux-armv7l/wheel/gffutils-0.13.data/scripts 2024-04-13T19:19:00,478 copying build/scripts-3.7/gffutils-cli -> build/bdist.linux-armv7l/wheel/gffutils-0.13.data/scripts 2024-04-13T19:19:00,482 changing mode of build/bdist.linux-armv7l/wheel/gffutils-0.13.data/scripts/gffutils-cli to 755 2024-04-13T19:19:00,517 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2024-04-13T19:19:00,525 creating build/bdist.linux-armv7l/wheel/gffutils-0.13.dist-info/WHEEL 2024-04-13T19:19:00,530 creating '/tmp/pip-wheel-uyq27jw7/gffutils-0.13-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-13T19:19:00,535 adding 'gffutils/__init__.py' 2024-04-13T19:19:00,538 adding 'gffutils/attributes.py' 2024-04-13T19:19:00,542 adding 'gffutils/bins.py' 2024-04-13T19:19:00,545 adding 'gffutils/biopython_integration.py' 2024-04-13T19:19:00,548 adding 'gffutils/constants.py' 2024-04-13T19:19:00,551 adding 'gffutils/convert.py' 2024-04-13T19:19:00,567 adding 'gffutils/create.py' 2024-04-13T19:19:00,570 adding 'gffutils/exceptions.py' 2024-04-13T19:19:00,575 adding 'gffutils/feature.py' 2024-04-13T19:19:00,579 adding 'gffutils/gffwriter.py' 2024-04-13T19:19:00,586 adding 'gffutils/helpers.py' 2024-04-13T19:19:00,589 adding 'gffutils/inspect.py' 2024-04-13T19:19:00,610 adding 'gffutils/interface.py' 2024-04-13T19:19:00,615 adding 'gffutils/iterators.py' 2024-04-13T19:19:00,618 adding 'gffutils/merge_criteria.py' 2024-04-13T19:19:00,623 adding 'gffutils/parser.py' 2024-04-13T19:19:00,627 adding 'gffutils/pybedtools_integration.py' 2024-04-13T19:19:00,630 adding 'gffutils/version.py' 2024-04-13T19:19:00,634 adding 'gffutils/scripts/gffutils-flybase-convert.py' 2024-04-13T19:19:00,638 adding 'gffutils/test/__init__.py' 2024-04-13T19:19:00,641 adding 'gffutils/test/attr_test_cases.py' 2024-04-13T19:19:00,644 adding 'gffutils/test/conftest.py' 2024-04-13T19:19:00,647 adding 'gffutils/test/expected.py' 2024-04-13T19:19:00,650 adding 'gffutils/test/feature_test.py' 2024-04-13T19:19:00,653 adding 'gffutils/test/helpers_test.py' 2024-04-13T19:19:00,656 adding 'gffutils/test/parser_test.py' 2024-04-13T19:19:00,659 adding 'gffutils/test/performance_evaluation.py' 2024-04-13T19:19:00,662 adding 'gffutils/test/synth_test_base.py' 2024-04-13T19:19:00,673 adding 'gffutils/test/test_1.py' 2024-04-13T19:19:00,677 adding 'gffutils/test/test_biopython_integration.py' 2024-04-13T19:19:00,679 adding 'gffutils/test/test_cli.py' 2024-04-13T19:19:00,685 adding 'gffutils/test/test_issues.py' 2024-04-13T19:19:00,688 adding 'gffutils/test/test_iterators.py' 2024-04-13T19:19:00,692 adding 'gffutils/test/test_merge.py' 2024-04-13T19:19:00,694 adding 'gffutils/test/test_merge_all.py' 2024-04-13T19:19:00,705 adding 'gffutils/test/data/F3-unique-3.v2.gff' 2024-04-13T19:19:00,708 adding 'gffutils/test/data/FBgn0031208.gff' 2024-04-13T19:19:00,711 adding 'gffutils/test/data/FBgn0031208.gtf' 2024-04-13T19:19:00,718 adding 'gffutils/test/data/FBgn0031208.gtf.db' 2024-04-13T19:19:00,747 adding 'gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt' 2024-04-13T19:19:00,772 adding 'gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt' 2024-04-13T19:19:00,776 adding 'gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt' 2024-04-13T19:19:00,779 adding 'gffutils/test/data/c_elegans_WS199_ann_gff.txt' 2024-04-13T19:19:00,781 adding 'gffutils/test/data/c_elegans_WS199_dna_shortened.fa' 2024-04-13T19:19:00,785 adding 'gffutils/test/data/c_elegans_WS199_shortened_gff.txt' 2024-04-13T19:19:00,788 adding 'gffutils/test/data/dm6-chr2L.fa' 2024-04-13T19:19:00,790 adding 'gffutils/test/data/dm6-chr2L.fa.fai' 2024-04-13T19:19:02,448 adding 'gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff' 2024-04-13T19:19:02,631 adding 'gffutils/test/data/download-large-annotation-files.sh' 2024-04-13T19:19:02,634 adding 'gffutils/test/data/ensembl_gtf.txt' 2024-04-13T19:19:02,637 adding 'gffutils/test/data/gencode-v19.gtf' 2024-04-13T19:19:02,663 adding 'gffutils/test/data/gencode.vM8.5000_gene_ids.txt' 2024-04-13T19:19:02,688 adding 'gffutils/test/data/gencode.vM8.5000_transcript_ids.txt' 2024-04-13T19:19:02,692 adding 'gffutils/test/data/gencode.vM8.chromsizes.txt' 2024-04-13T19:19:02,695 adding 'gffutils/test/data/gff_example1.gff3' 2024-04-13T19:19:02,697 adding 'gffutils/test/data/gff_example1.gff3.gz' 2024-04-13T19:19:02,700 adding 'gffutils/test/data/glimmer_nokeyval.gff3' 2024-04-13T19:19:02,702 adding 'gffutils/test/data/gms2_example.gff3' 2024-04-13T19:19:02,705 adding 'gffutils/test/data/hybrid1.gff3' 2024-04-13T19:19:02,707 adding 'gffutils/test/data/intro_docs_example.gff' 2024-04-13T19:19:02,710 adding 'gffutils/test/data/issue167.gff' 2024-04-13T19:19:02,713 adding 'gffutils/test/data/issue174.gtf' 2024-04-13T19:19:02,716 adding 'gffutils/test/data/issue_197.gff' 2024-04-13T19:19:02,718 adding 'gffutils/test/data/jgi_gff2.txt' 2024-04-13T19:19:02,721 adding 'gffutils/test/data/keep-order-test.gtf' 2024-04-13T19:19:02,723 adding 'gffutils/test/data/keyval_sep_in_attrs.gff' 2024-04-13T19:19:02,725 adding 'gffutils/test/data/mouse_extra_comma.gff3' 2024-04-13T19:19:02,728 adding 'gffutils/test/data/ncbi_gff3.txt' 2024-04-13T19:19:02,732 adding 'gffutils/test/data/nonascii' 2024-04-13T19:19:02,734 adding 'gffutils/test/data/random-chr.gff' 2024-04-13T19:19:02,737 adding 'gffutils/test/data/sharr.gtf' 2024-04-13T19:19:02,739 adding 'gffutils/test/data/synthetic.gff3' 2024-04-13T19:19:02,741 adding 'gffutils/test/data/unsanitized.gff' 2024-04-13T19:19:02,744 adding 'gffutils/test/data/wormbase_gff2.txt' 2024-04-13T19:19:02,747 adding 'gffutils/test/data/wormbase_gff2_alt.txt' 2024-04-13T19:19:02,753 adding 'gffutils-0.13.data/scripts/gffutils-cli' 2024-04-13T19:19:02,758 adding 'gffutils-0.13.dist-info/LICENSE' 2024-04-13T19:19:02,760 adding 'gffutils-0.13.dist-info/METADATA' 2024-04-13T19:19:02,762 adding 'gffutils-0.13.dist-info/WHEEL' 2024-04-13T19:19:02,764 adding 'gffutils-0.13.dist-info/top_level.txt' 2024-04-13T19:19:02,767 adding 'gffutils-0.13.dist-info/RECORD' 2024-04-13T19:19:02,831 removing build/bdist.linux-armv7l/wheel 2024-04-13T19:19:03,050 Building wheel for gffutils (setup.py): finished with status 'done' 2024-04-13T19:19:03,106 Created wheel for gffutils: filename=gffutils-0.13-py3-none-any.whl size=1626444 sha256=7538124114af4d314f4928ba2b6fe9ecf7d2ec159fb9db9d1032d43bdd0f0c25 2024-04-13T19:19:03,108 Stored in directory: /tmp/pip-ephem-wheel-cache-7dtd1c65/wheels/e4/6b/0c/56dfd9ef0dc9aed7b5016d69eba7d63b646232f4fbab618db1 2024-04-13T19:19:03,144 Successfully built gffutils 2024-04-13T19:19:03,257 Removed build tracker: '/tmp/pip-build-tracker-ke5ek6ff'