2024-04-14T16:13:30,953 Created temporary directory: /tmp/pip-build-tracker-9q3cr0hh 2024-04-14T16:13:30,954 Initialized build tracking at /tmp/pip-build-tracker-9q3cr0hh 2024-04-14T16:13:30,955 Created build tracker: /tmp/pip-build-tracker-9q3cr0hh 2024-04-14T16:13:30,955 Entered build tracker: /tmp/pip-build-tracker-9q3cr0hh 2024-04-14T16:13:30,956 Created temporary directory: /tmp/pip-wheel-f1edro3l 2024-04-14T16:13:30,960 Created temporary directory: /tmp/pip-ephem-wheel-cache-3rhukxxq 2024-04-14T16:13:30,986 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-14T16:13:30,990 2 location(s) to search for versions of mdapy: 2024-04-14T16:13:30,990 * https://pypi.org/simple/mdapy/ 2024-04-14T16:13:30,990 * https://www.piwheels.org/simple/mdapy/ 2024-04-14T16:13:30,991 Fetching project page and analyzing links: https://pypi.org/simple/mdapy/ 2024-04-14T16:13:30,991 Getting page https://pypi.org/simple/mdapy/ 2024-04-14T16:13:30,993 Found index url https://pypi.org/simple/ 2024-04-14T16:13:31,248 Fetched page https://pypi.org/simple/mdapy/ as application/vnd.pypi.simple.v1+json 2024-04-14T16:13:31,322 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f8/b3/fa3165f5371bf25f330d582412ce6111d81d16e1068c6a52fff3aeed48fd/mdapy-0.7.6-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,323 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/af/78/2606a229dc0aeee9d63eecc4aaa6768aa4d2bb0a78564e452d46b970a43a/mdapy-0.7.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,324 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/73/6a/640a3d6e6e3c97d06a1bf73d2b6904c3a7f1b1a9c11de29ae1e0476fe7c6/mdapy-0.7.6-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,324 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/66/fc/4d83046add95582345104742c12fb8e2a6b3a8968732fe31c8579f5a97ef/mdapy-0.7.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,325 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/07/5c/7a729f1a535afa699f6dfb3b0397896298f5657a64b71084398cf6cfdc49/mdapy-0.7.6-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,326 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/d5/75/b981c88ef7545d76c6319a483c42086b789bf60aa8ee28eb0607f5f8b154/mdapy-0.7.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,326 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/ce/f4/0990d772c757a937e56751013af5908d37cff6ecb567d08ce583492c9d1b/mdapy-0.7.6-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,327 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/42/e6/0e929a981723be23cf81fcc63c7b3c01ca77c8922750a4cbbbb83e267c79/mdapy-0.7.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,328 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/14/2c/f0eb260b52cfb221f26d5c334067e6d40e62ee530257b26202bc6db7d1a5/mdapy-0.7.7-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,328 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/34/8a/93cd6fbd746a8c595d4af152a3dbcf030e6d28659886cd07a4b2f1e8e1c2/mdapy-0.7.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,329 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/bc/ad/c7c9bdfaa2b1fdb0053910f21cf3f7ff576a2880a6d6c17767ea9232faa3/mdapy-0.7.7-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,330 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f3/bf/9be55b37f2e836515bc7f1b8e9668dc5e2fd023cb79656647fbed4d1f1be/mdapy-0.7.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,331 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/8b/a9/45c25f4ab8b7ab05ec032f1dfa62c1d7804fa146c2b212b4daf059ddc6a2/mdapy-0.7.7-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2024-04-14T16:13:31,332 Skipping link: No binaries permitted for mdapy: 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https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2024-04-14T16:13:31,334 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/47/83/350174a1238e5d982e7d5a58966ffb1b142fb1c65d15359d8b58b3455b7a/mdapy-0.7.8-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2024-04-14T16:13:31,335 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/52/f6/c3fe6f103679c6ad7285525645c4bf14ae435a289b08a3830b374a81cecf/mdapy-0.7.8-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2024-04-14T16:13:31,335 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/b2/50/dbac02eb7159c6e96f0d5bbb97ae538f52fc7ec25423e600caa81aeab089/mdapy-0.7.8-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2024-04-14T16:13:31,336 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/27/48/dc4cb441bf2e06da3eecfaa9b13554f8a6282312c842f271b6bf3059e331/mdapy-0.7.8-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2024-04-14T16:13:31,337 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/14/24/39fced0a574be250cfeb26e75acf14336ffb3481dc072b7eb6afcf8ad699/mdapy-0.7.8-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2024-04-14T16:13:31,337 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f6/ea/8e024914da8f894f8d5ab36f8ff5a1e6eadbd92fdc38210b84ae7e2f17ce/mdapy-0.7.8-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2024-04-14T16:13:31,338 Skipping link: No binaries permitted for mdapy: 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https://files.pythonhosted.org/packages/64/37/535f581360ef0de48cfffd4b513b2aa8f0614c98cbe5feef87a5f3930bd8/mdapy-0.7.9-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2024-04-14T16:13:31,341 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f9/b2/72561dbdc5fa58ef0d747248bd751325b02c8d4c7baa1519bd09d57bbc8e/mdapy-0.7.9-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2024-04-14T16:13:31,342 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/13/4e/be694bee4fffcd3f5600fd814b608c09e61b3c46a13fc84d4c521f6e6d1e/mdapy-0.7.9-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2024-04-14T16:13:31,342 Skipping link: No binaries permitted for mdapy: 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https://files.pythonhosted.org/packages/68/b9/befe67aef0739dee731d7811e5a0328ad11c9447388a46c3633b19927179/mdapy-0.9.4-cp38-cp38-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,455 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/66/9e/6a36914774171c5f74fcbe7bdf5042f9bfaa5912a4e49be3a77d95bfe351/mdapy-0.9.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,456 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/c1/2f/50b9bf60d0b16e8fabe229bd74678ddcbd89e5e3d7b952b7507d2d57a7ac/mdapy-0.9.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,456 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/0f/57/be639c1c208d2a0bab760b14c195fb6a99442204d87079ca6fe370d92090/mdapy-0.9.4-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,457 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/ee/34/52731d47359c57e7de8726b76c86d08d0ae38733e492fe520bb1a6510564/mdapy-0.9.4-cp39-cp39-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,457 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/db/1c/62d2cd406974d3002e567d7e7bc6f1cf7e94e2855c93cd979b0d8519825e/mdapy-0.9.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,458 Found link https://files.pythonhosted.org/packages/84/f9/d5574b9b51e042d351cbc1ce43fdc98460b5c6ab4ccff5010dc1d5d36af3/mdapy-0.9.4.tar.gz (from https://pypi.org/simple/mdapy/) 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https://files.pythonhosted.org/packages/48/95/e00a74d109bc36b66a8e92f1d1544e822df2e6e083ebf5585a25a1238346/mdapy-0.9.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,462 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/14/5d/b3cbea196fa5b71215e9671c72dbc569f377eeda7c8d17a8ca6803cb9af2/mdapy-0.9.5-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,462 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f5/af/c0cd8b1050c271c5dbf7f0be1c42083afa46bad51a9722cdc1e562e20402/mdapy-0.9.5-cp311-cp311-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,463 Skipping link: No binaries permitted for mdapy: 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https://files.pythonhosted.org/packages/26/8e/5f2785a5803e2e81cc8ed07384ee84aad2fee03157a9ddcfc261b63eb08d/mdapy-0.9.7-cp38-cp38-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,488 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/a3/15/0d9e037c1fe1f7cd5749a705aad21f6e02b298dd53f1ef62a78ea4651085/mdapy-0.9.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,488 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/dd/c1/c65a829bbbb9c70235c328516f22d973b1f58275dc273eb3a59cf93d382a/mdapy-0.9.7-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,489 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/c2/f1/6fb9976e1532b2f833738fdf3161a29372b397c156e5af00b40295dfac18/mdapy-0.9.7-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,490 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/54/db/36e00ad44f1eff759b36d959792e5b9988819117b1bf3150e89ffcd8a807/mdapy-0.9.7-cp39-cp39-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,490 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f6/db/1d74a7de82037455bef69d8be09f2e4eb073452d3cccf7bdf0fb3f4d256f/mdapy-0.9.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,492 Found link https://files.pythonhosted.org/packages/06/d7/cae66137bf8e05f3ec2af023812a52b25319c0dac8d00aa12b6e27ec1686/mdapy-0.9.7.tar.gz (from https://pypi.org/simple/mdapy/) 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https://files.pythonhosted.org/packages/5a/3c/1a8e6084a30afb42a57bad325fcfa3eb3628a1e5983c142075d15ed98cea/mdapy-0.9.8-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,502 Found link https://files.pythonhosted.org/packages/30/da/39c197571d39140c1df94449bbcf16b86a62ce85ed2899e3e0098e41e22b/mdapy-0.9.8.tar.gz (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12), version: 0.9.8 2024-04-14T16:13:31,503 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/21/b7/7bfd2e92c498f06b63c0885ec440bfbbdb62686c09cfd84ad49ff9134d29/mdapy-0.9.9-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,504 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/82/30/6c275df8a492b1759c2de3ad535c99b560fa03e18ea08f7b237142995817/mdapy-0.9.9-cp310-cp310-manylinux1_x86_64.whl (from 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for mdapy: https://files.pythonhosted.org/packages/32/e4/7fb40b20da5c4d9c04d810aa59d80813f46e1ba024f9f3a19a3bdd362e65/mdapy-0.10.6-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:<3.12,>=3.8) 2024-04-14T16:13:31,581 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/18/19/069445f0750986ff376811baa7d602a4e979c051c0c3a1249306c44b8854/mdapy-0.10.6-cp311-cp311-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:<3.12,>=3.8) 2024-04-14T16:13:31,581 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/5c/b5/3de237b65b5ac6d4b460c91eb3efa35c0721cddac441b58e85b7fd3e52ae/mdapy-0.10.6-cp311-cp311-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:<3.12,>=3.8) 2024-04-14T16:13:31,582 Skipping link: No binaries permitted for mdapy: 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https://files.pythonhosted.org/packages/99/8e/d13c4c2d0a9b496a92d95ddfb94ffcbc2b4cb3e3d5dcf7decc12ee4b88ae/mdapy-0.10.6-cp38-cp38-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:<3.12,>=3.8) 2024-04-14T16:13:31,584 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f7/08/46d5018bf7862caa6281230b21f4fdb2c7c9c40399f0e116d52265b4dc78/mdapy-0.10.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:<3.12,>=3.8) 2024-04-14T16:13:31,584 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/85/35/8e969389052b853f8384921d2425602c37b25700ebb040e988a068299843/mdapy-0.10.6-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:<3.12,>=3.8) 2024-04-14T16:13:31,585 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/1d/d7/b17c1665ba0696cbdbdc31c47d3f13d1ca34ee78ab35aa789cf1f58e335d/mdapy-0.10.6-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:<3.12,>=3.8) 2024-04-14T16:13:31,585 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/c0/df/9cff00300495b70b60a01ddda7b63a0ce19d7a265193b2f8f9117a8d9649/mdapy-0.10.6-cp39-cp39-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:<3.12,>=3.8) 2024-04-14T16:13:31,586 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/d8/14/a8f9b8bb9220a3f6f0a2c13a31b8d586ca0633f7fae0865a68c8100e45a0/mdapy-0.10.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:<3.12,>=3.8) 2024-04-14T16:13:31,587 Found link https://files.pythonhosted.org/packages/eb/56/af746f2474d5f5d6c54c5906194c1c85c55ac68f0b1f8d6c597376bb1bb1/mdapy-0.10.6.tar.gz (from https://pypi.org/simple/mdapy/) (requires-python:<3.12,>=3.8), version: 0.10.6 2024-04-14T16:13:31,589 Fetching project page and analyzing links: https://www.piwheels.org/simple/mdapy/ 2024-04-14T16:13:31,589 Getting page https://www.piwheels.org/simple/mdapy/ 2024-04-14T16:13:31,591 Found index url https://www.piwheels.org/simple/ 2024-04-14T16:13:31,819 Fetched page https://www.piwheels.org/simple/mdapy/ as text/html 2024-04-14T16:13:31,837 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.10.4-cp311-cp311-linux_armv6l.whl#sha256=2f2394a859b6bea5ca615a73f90d900d3649c1bb91e9e9c2abc30dccd59fbbc2 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,837 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.10.4-cp311-cp311-linux_armv7l.whl#sha256=2f2394a859b6bea5ca615a73f90d900d3649c1bb91e9e9c2abc30dccd59fbbc2 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,838 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.10.4-cp39-cp39-linux_armv6l.whl#sha256=bcc8acf68c4d4098c1ed88ed2872b90fad7481a2cc7de0a57a312aa2206f0c75 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,838 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.10.4-cp39-cp39-linux_armv7l.whl#sha256=bcc8acf68c4d4098c1ed88ed2872b90fad7481a2cc7de0a57a312aa2206f0c75 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,839 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.10.3-cp311-cp311-linux_armv6l.whl#sha256=ad54fe51f4505f2cc3eba8d0b2d712eee8ef75e678440631f1162e8fb7aa7199 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,839 Skipping link: No binaries permitted for mdapy: 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https://www.piwheels.org/simple/mdapy/mdapy-0.9.4-cp311-cp311-linux_armv7l.whl#sha256=0fd5eff1452802d26df080e4a364476ec70dd73184afdef65d3569aaeaefaacd (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,864 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=66dfe86b09862b2a244119be790fe588da000a82d6e9a7a4a517d68d3d52621b (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,864 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=66dfe86b09862b2a244119be790fe588da000a82d6e9a7a4a517d68d3d52621b (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,864 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.3-cp311-cp311-linux_armv6l.whl#sha256=8cb78787290c397b9dfece2e2dea33932dbd7f8bfc25102ffb19d3cfc3e8a21b (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,865 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.3-cp311-cp311-linux_armv7l.whl#sha256=8cb78787290c397b9dfece2e2dea33932dbd7f8bfc25102ffb19d3cfc3e8a21b (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,865 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=60b547ad8a094bed5c30220348077063f31aa610cd786220c201b113ce3bcce7 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,866 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=60b547ad8a094bed5c30220348077063f31aa610cd786220c201b113ce3bcce7 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,866 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.2-cp311-cp311-linux_armv6l.whl#sha256=3b806283528bd30dd065430bcac469fdfa9e9c3c51b68bdae3dd21bd50b224e7 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,867 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.2-cp311-cp311-linux_armv7l.whl#sha256=3b806283528bd30dd065430bcac469fdfa9e9c3c51b68bdae3dd21bd50b224e7 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,868 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=bdfb377dcc2463dc346ce1b63cfcf791a2ebfb039812edd97171e427316fab54 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,868 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=bdfb377dcc2463dc346ce1b63cfcf791a2ebfb039812edd97171e427316fab54 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,869 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.1-cp311-cp311-linux_armv6l.whl#sha256=4a614bb384e0b45f19f4a1b65ea1bab28abda3e4b1fa3cba4c7160385983f16e (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,869 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.1-cp311-cp311-linux_armv7l.whl#sha256=4a614bb384e0b45f19f4a1b65ea1bab28abda3e4b1fa3cba4c7160385983f16e (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,870 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=1f00cd684879a3b96744cdb2afedbc5fbca471c4329dd972df12eda72573861d (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,871 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=1f00cd684879a3b96744cdb2afedbc5fbca471c4329dd972df12eda72573861d (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2024-04-14T16:13:31,871 Skipping link: not a file: https://www.piwheels.org/simple/mdapy/ 2024-04-14T16:13:31,872 Skipping link: not a file: https://pypi.org/simple/mdapy/ 2024-04-14T16:13:31,892 Given no hashes to check 1 links for project 'mdapy': discarding no candidates 2024-04-14T16:13:31,910 Collecting mdapy==0.10.6 2024-04-14T16:13:31,912 Created temporary directory: /tmp/pip-unpack-34f5cg86 2024-04-14T16:13:32,129 Downloading mdapy-0.10.6.tar.gz (4.2 MB) 2024-04-14T16:13:33,907 Added mdapy==0.10.6 from https://files.pythonhosted.org/packages/eb/56/af746f2474d5f5d6c54c5906194c1c85c55ac68f0b1f8d6c597376bb1bb1/mdapy-0.10.6.tar.gz to build tracker '/tmp/pip-build-tracker-9q3cr0hh' 2024-04-14T16:13:33,913 Created temporary directory: /tmp/pip-build-env-um2q_mer 2024-04-14T16:13:33,917 Installing build dependencies: started 2024-04-14T16:13:33,919 Running command pip subprocess to install build dependencies 2024-04-14T16:13:35,085 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-14T16:13:35,853 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-14T16:13:37,574 Collecting setuptools 2024-04-14T16:13:37,589 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-04-14T16:13:37,914 Collecting wheel 2024-04-14T16:13:37,931 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-14T16:13:38,175 Collecting pybind11 2024-04-14T16:13:38,190 Using cached https://www.piwheels.org/simple/pybind11/pybind11-2.12.0-py3-none-any.whl (234 kB) 2024-04-14T16:13:40,862 Installing collected packages: wheel, setuptools, pybind11 2024-04-14T16:13:41,128 Creating /tmp/pip-build-env-um2q_mer/overlay/local/bin 2024-04-14T16:13:41,131 changing mode of /tmp/pip-build-env-um2q_mer/overlay/local/bin/wheel to 755 2024-04-14T16:13:44,826 changing mode of /tmp/pip-build-env-um2q_mer/overlay/local/bin/pybind11-config to 755 2024-04-14T16:13:44,854 Successfully installed pybind11-2.12.0 setuptools-69.5.1 wheel-0.43.0 2024-04-14T16:13:45,454 Installing build dependencies: finished with status 'done' 2024-04-14T16:13:45,458 Getting requirements to build wheel: started 2024-04-14T16:13:45,459 Running command Getting requirements to build wheel 2024-04-14T16:13:46,080 /tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:83: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2024-04-14T16:13:46,080 corresp(dist, value, root_dir) 2024-04-14T16:13:46,340 running egg_info 2024-04-14T16:13:46,344 writing mdapy.egg-info/PKG-INFO 2024-04-14T16:13:46,350 writing dependency_links to mdapy.egg-info/dependency_links.txt 2024-04-14T16:13:46,352 writing entry points to mdapy.egg-info/entry_points.txt 2024-04-14T16:13:46,355 writing requirements to mdapy.egg-info/requires.txt 2024-04-14T16:13:46,357 writing top-level names to mdapy.egg-info/top_level.txt 2024-04-14T16:13:46,379 reading manifest file 'mdapy.egg-info/SOURCES.txt' 2024-04-14T16:13:46,400 adding license file 'LICENSE' 2024-04-14T16:13:46,407 writing manifest file 'mdapy.egg-info/SOURCES.txt' 2024-04-14T16:13:46,529 Getting requirements to build wheel: finished with status 'done' 2024-04-14T16:13:46,540 Created temporary directory: /tmp/pip-modern-metadata-ez1mbwd6 2024-04-14T16:13:46,543 Preparing metadata (pyproject.toml): started 2024-04-14T16:13:46,544 Running command Preparing metadata (pyproject.toml) 2024-04-14T16:13:47,333 /tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:83: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2024-04-14T16:13:47,333 corresp(dist, value, root_dir) 2024-04-14T16:13:47,788 running dist_info 2024-04-14T16:13:47,796 creating /tmp/pip-modern-metadata-ez1mbwd6/mdapy.egg-info 2024-04-14T16:13:47,802 writing /tmp/pip-modern-metadata-ez1mbwd6/mdapy.egg-info/PKG-INFO 2024-04-14T16:13:47,809 writing dependency_links to /tmp/pip-modern-metadata-ez1mbwd6/mdapy.egg-info/dependency_links.txt 2024-04-14T16:13:47,810 writing entry points to /tmp/pip-modern-metadata-ez1mbwd6/mdapy.egg-info/entry_points.txt 2024-04-14T16:13:47,813 writing requirements to /tmp/pip-modern-metadata-ez1mbwd6/mdapy.egg-info/requires.txt 2024-04-14T16:13:47,814 writing top-level names to /tmp/pip-modern-metadata-ez1mbwd6/mdapy.egg-info/top_level.txt 2024-04-14T16:13:47,816 writing manifest file '/tmp/pip-modern-metadata-ez1mbwd6/mdapy.egg-info/SOURCES.txt' 2024-04-14T16:13:47,833 reading manifest file '/tmp/pip-modern-metadata-ez1mbwd6/mdapy.egg-info/SOURCES.txt' 2024-04-14T16:13:47,835 adding license file 'LICENSE' 2024-04-14T16:13:47,838 writing manifest file '/tmp/pip-modern-metadata-ez1mbwd6/mdapy.egg-info/SOURCES.txt' 2024-04-14T16:13:47,839 creating '/tmp/pip-modern-metadata-ez1mbwd6/mdapy-0.10.6.dist-info' 2024-04-14T16:13:48,244 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-14T16:13:48,250 Source in /tmp/pip-wheel-f1edro3l/mdapy_d9e5fc6ade8a4f8387e71c17ea4fdc4c has version 0.10.6, which satisfies requirement mdapy==0.10.6 from https://files.pythonhosted.org/packages/eb/56/af746f2474d5f5d6c54c5906194c1c85c55ac68f0b1f8d6c597376bb1bb1/mdapy-0.10.6.tar.gz 2024-04-14T16:13:48,253 Removed mdapy==0.10.6 from https://files.pythonhosted.org/packages/eb/56/af746f2474d5f5d6c54c5906194c1c85c55ac68f0b1f8d6c597376bb1bb1/mdapy-0.10.6.tar.gz from build tracker '/tmp/pip-build-tracker-9q3cr0hh' 2024-04-14T16:13:48,262 Created temporary directory: /tmp/pip-unpack-jia2tp9m 2024-04-14T16:13:48,264 Created temporary directory: /tmp/pip-unpack-jqq8abaz 2024-04-14T16:13:48,292 Building wheels for collected packages: mdapy 2024-04-14T16:13:48,298 Created temporary directory: /tmp/pip-wheel-plhhwi9n 2024-04-14T16:13:48,298 Destination directory: /tmp/pip-wheel-plhhwi9n 2024-04-14T16:13:48,301 Building wheel for mdapy (pyproject.toml): started 2024-04-14T16:13:48,302 Running command Building wheel for mdapy (pyproject.toml) 2024-04-14T16:13:48,886 /tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:83: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2024-04-14T16:13:48,887 corresp(dist, value, root_dir) 2024-04-14T16:13:49,121 running bdist_wheel 2024-04-14T16:13:49,137 running build 2024-04-14T16:13:49,137 running build_py 2024-04-14T16:13:49,144 creating build 2024-04-14T16:13:49,145 creating build/lib.linux-armv7l-cpython-311 2024-04-14T16:13:49,146 creating build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,147 copying mdapy/__main__.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,149 copying mdapy/perturb_model.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,151 copying mdapy/__init__.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,153 copying mdapy/tool_function.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,156 copying mdapy/common_neighbor_parameter.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,159 copying mdapy/lindemann_parameter.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,161 copying mdapy/warren_cowley_parameter.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,164 copying mdapy/pigz.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,166 copying mdapy/nearest_neighbor.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,169 copying mdapy/ackland_jones_analysis.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,172 copying mdapy/centro_symmetry_parameter.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,175 copying mdapy/system.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,180 copying mdapy/identify_SFs_TBs.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,183 copying mdapy/load_save_data.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,186 copying mdapy/main.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,190 copying mdapy/steinhardt_bond_orientation.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,193 copying mdapy/create_polycrystalline.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,196 copying mdapy/replicate.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,198 copying mdapy/neighbor.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,201 copying mdapy/entropy.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,204 copying mdapy/dft2nepxyz.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,206 copying mdapy/spatial_binning.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,209 copying mdapy/mean_squared_displacement.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,211 copying mdapy/temperature.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,213 copying mdapy/phonon.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,215 copying mdapy/common_neighbor_analysis.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,218 copying mdapy/eam_average.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,221 copying mdapy/eam_generate.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,223 copying mdapy/potential.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,227 copying mdapy/polyhedral_template_matching.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,230 copying mdapy/lattice_maker.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,233 copying mdapy/voronoi_analysis.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,235 copying mdapy/cluser_analysis.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,237 copying mdapy/pair_distribution.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,240 copying mdapy/void_distribution.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,243 copying mdapy/visualize.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,245 copying mdapy/plotset.py -> build/lib.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,248 running egg_info 2024-04-14T16:13:49,252 writing mdapy.egg-info/PKG-INFO 2024-04-14T16:13:49,258 writing dependency_links to mdapy.egg-info/dependency_links.txt 2024-04-14T16:13:49,260 writing entry points to mdapy.egg-info/entry_points.txt 2024-04-14T16:13:49,263 writing requirements to mdapy.egg-info/requires.txt 2024-04-14T16:13:49,264 writing top-level names to mdapy.egg-info/top_level.txt 2024-04-14T16:13:49,275 reading manifest file 'mdapy.egg-info/SOURCES.txt' 2024-04-14T16:13:49,280 adding license file 'LICENSE' 2024-04-14T16:13:49,287 writing manifest file 'mdapy.egg-info/SOURCES.txt' 2024-04-14T16:13:49,291 /tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mdapy.cluster' is absent from the `packages` configuration. 2024-04-14T16:13:49,292 !! 2024-04-14T16:13:49,293 ******************************************************************************** 2024-04-14T16:13:49,294 ############################ 2024-04-14T16:13:49,294 # Package would be ignored # 2024-04-14T16:13:49,295 ############################ 2024-04-14T16:13:49,295 Python recognizes 'mdapy.cluster' as an importable package[^1], 2024-04-14T16:13:49,296 but it is absent from setuptools' `packages` configuration. 2024-04-14T16:13:49,296 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-14T16:13:49,297 package, please make sure that 'mdapy.cluster' is explicitly added 2024-04-14T16:13:49,297 to the `packages` configuration field. 2024-04-14T16:13:49,298 Alternatively, you can also rely on setuptools' discovery methods 2024-04-14T16:13:49,299 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-14T16:13:49,299 instead of `find_packages(...)`/`find:`). 2024-04-14T16:13:49,300 You can read more about "package discovery" on setuptools documentation page: 2024-04-14T16:13:49,301 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-14T16:13:49,302 If you don't want 'mdapy.cluster' to be distributed and are 2024-04-14T16:13:49,303 already explicitly excluding 'mdapy.cluster' via 2024-04-14T16:13:49,303 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-14T16:13:49,304 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-14T16:13:49,304 combination with a more fine grained `package-data` configuration. 2024-04-14T16:13:49,306 You can read more about "package data files" on setuptools documentation page: 2024-04-14T16:13:49,307 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-14T16:13:49,308 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-14T16:13:49,309 even if it does not contain any `.py` files. 2024-04-14T16:13:49,309 On the other hand, currently there is no concept of package data 2024-04-14T16:13:49,310 directory, all directories are treated like packages. 2024-04-14T16:13:49,310 ******************************************************************************** 2024-04-14T16:13:49,311 !! 2024-04-14T16:13:49,312 check.warn(importable) 2024-04-14T16:13:49,313 /tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mdapy.neigh' is absent from the `packages` configuration. 2024-04-14T16:13:49,313 !! 2024-04-14T16:13:49,315 ******************************************************************************** 2024-04-14T16:13:49,315 ############################ 2024-04-14T16:13:49,316 # Package would be ignored # 2024-04-14T16:13:49,317 ############################ 2024-04-14T16:13:49,318 Python recognizes 'mdapy.neigh' as an importable package[^1], 2024-04-14T16:13:49,318 but it is absent from setuptools' `packages` configuration. 2024-04-14T16:13:49,319 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-14T16:13:49,320 package, please make sure that 'mdapy.neigh' is explicitly added 2024-04-14T16:13:49,320 to the `packages` configuration field. 2024-04-14T16:13:49,321 Alternatively, you can also rely on setuptools' discovery methods 2024-04-14T16:13:49,322 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-14T16:13:49,323 instead of `find_packages(...)`/`find:`). 2024-04-14T16:13:49,324 You can read more about "package discovery" on setuptools documentation page: 2024-04-14T16:13:49,325 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-14T16:13:49,326 If you don't want 'mdapy.neigh' to be distributed and are 2024-04-14T16:13:49,326 already explicitly excluding 'mdapy.neigh' via 2024-04-14T16:13:49,327 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-14T16:13:49,327 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-14T16:13:49,327 combination with a more fine grained `package-data` configuration. 2024-04-14T16:13:49,328 You can read more about "package data files" on setuptools documentation page: 2024-04-14T16:13:49,329 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-14T16:13:49,330 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-14T16:13:49,331 even if it does not contain any `.py` files. 2024-04-14T16:13:49,331 On the other hand, currently there is no concept of package data 2024-04-14T16:13:49,332 directory, all directories are treated like packages. 2024-04-14T16:13:49,332 ******************************************************************************** 2024-04-14T16:13:49,333 !! 2024-04-14T16:13:49,334 check.warn(importable) 2024-04-14T16:13:49,334 /tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mdapy.nep' is absent from the `packages` configuration. 2024-04-14T16:13:49,335 !! 2024-04-14T16:13:49,336 ******************************************************************************** 2024-04-14T16:13:49,337 ############################ 2024-04-14T16:13:49,337 # Package would be ignored # 2024-04-14T16:13:49,337 ############################ 2024-04-14T16:13:49,338 Python recognizes 'mdapy.nep' as an importable package[^1], 2024-04-14T16:13:49,338 but it is absent from setuptools' `packages` configuration. 2024-04-14T16:13:49,339 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-14T16:13:49,340 package, please make sure that 'mdapy.nep' is explicitly added 2024-04-14T16:13:49,340 to the `packages` configuration field. 2024-04-14T16:13:49,342 Alternatively, you can also rely on setuptools' discovery methods 2024-04-14T16:13:49,342 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-14T16:13:49,343 instead of `find_packages(...)`/`find:`). 2024-04-14T16:13:49,344 You can read more about "package discovery" on setuptools documentation page: 2024-04-14T16:13:49,345 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-14T16:13:49,346 If you don't want 'mdapy.nep' to be distributed and are 2024-04-14T16:13:49,347 already explicitly excluding 'mdapy.nep' via 2024-04-14T16:13:49,347 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-14T16:13:49,348 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-14T16:13:49,349 combination with a more fine grained `package-data` configuration. 2024-04-14T16:13:49,350 You can read more about "package data files" on setuptools documentation page: 2024-04-14T16:13:49,351 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-14T16:13:49,353 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-14T16:13:49,354 even if it does not contain any `.py` files. 2024-04-14T16:13:49,354 On the other hand, currently there is no concept of package data 2024-04-14T16:13:49,355 directory, all directories are treated like packages. 2024-04-14T16:13:49,356 ******************************************************************************** 2024-04-14T16:13:49,358 !! 2024-04-14T16:13:49,359 check.warn(importable) 2024-04-14T16:13:49,359 /tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mdapy.ptm' is absent from the `packages` configuration. 2024-04-14T16:13:49,360 !! 2024-04-14T16:13:49,361 ******************************************************************************** 2024-04-14T16:13:49,361 ############################ 2024-04-14T16:13:49,362 # Package would be ignored # 2024-04-14T16:13:49,362 ############################ 2024-04-14T16:13:49,363 Python recognizes 'mdapy.ptm' as an importable package[^1], 2024-04-14T16:13:49,363 but it is absent from setuptools' `packages` configuration. 2024-04-14T16:13:49,364 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-14T16:13:49,365 package, please make sure that 'mdapy.ptm' is explicitly added 2024-04-14T16:13:49,365 to the `packages` configuration field. 2024-04-14T16:13:49,366 Alternatively, you can also rely on setuptools' discovery methods 2024-04-14T16:13:49,366 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-14T16:13:49,366 instead of `find_packages(...)`/`find:`). 2024-04-14T16:13:49,367 You can read more about "package discovery" on setuptools documentation page: 2024-04-14T16:13:49,368 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-14T16:13:49,369 If you don't want 'mdapy.ptm' to be distributed and are 2024-04-14T16:13:49,370 already explicitly excluding 'mdapy.ptm' via 2024-04-14T16:13:49,371 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-14T16:13:49,371 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-14T16:13:49,372 combination with a more fine grained `package-data` configuration. 2024-04-14T16:13:49,374 You can read more about "package data files" on setuptools documentation page: 2024-04-14T16:13:49,375 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-14T16:13:49,377 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-14T16:13:49,377 even if it does not contain any `.py` files. 2024-04-14T16:13:49,378 On the other hand, currently there is no concept of package data 2024-04-14T16:13:49,378 directory, all directories are treated like packages. 2024-04-14T16:13:49,379 ******************************************************************************** 2024-04-14T16:13:49,380 !! 2024-04-14T16:13:49,381 check.warn(importable) 2024-04-14T16:13:49,381 /tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mdapy.rdf' is absent from the `packages` configuration. 2024-04-14T16:13:49,382 !! 2024-04-14T16:13:49,383 ******************************************************************************** 2024-04-14T16:13:49,383 ############################ 2024-04-14T16:13:49,384 # Package would be ignored # 2024-04-14T16:13:49,384 ############################ 2024-04-14T16:13:49,385 Python recognizes 'mdapy.rdf' as an importable package[^1], 2024-04-14T16:13:49,386 but it is absent from setuptools' `packages` configuration. 2024-04-14T16:13:49,387 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-14T16:13:49,387 package, please make sure that 'mdapy.rdf' is explicitly added 2024-04-14T16:13:49,388 to the `packages` configuration field. 2024-04-14T16:13:49,389 Alternatively, you can also rely on setuptools' discovery methods 2024-04-14T16:13:49,390 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-14T16:13:49,390 instead of `find_packages(...)`/`find:`). 2024-04-14T16:13:49,392 You can read more about "package discovery" on setuptools documentation page: 2024-04-14T16:13:49,393 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-14T16:13:49,394 If you don't want 'mdapy.rdf' to be distributed and are 2024-04-14T16:13:49,394 already explicitly excluding 'mdapy.rdf' via 2024-04-14T16:13:49,395 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-14T16:13:49,396 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-14T16:13:49,396 combination with a more fine grained `package-data` configuration. 2024-04-14T16:13:49,397 You can read more about "package data files" on setuptools documentation page: 2024-04-14T16:13:49,398 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-14T16:13:49,399 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-14T16:13:49,400 even if it does not contain any `.py` files. 2024-04-14T16:13:49,400 On the other hand, currently there is no concept of package data 2024-04-14T16:13:49,400 directory, all directories are treated like packages. 2024-04-14T16:13:49,401 ******************************************************************************** 2024-04-14T16:13:49,402 !! 2024-04-14T16:13:49,402 check.warn(importable) 2024-04-14T16:13:49,403 /tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mdapy.voronoi' is absent from the `packages` configuration. 2024-04-14T16:13:49,403 !! 2024-04-14T16:13:49,404 ******************************************************************************** 2024-04-14T16:13:49,404 ############################ 2024-04-14T16:13:49,405 # Package would be ignored # 2024-04-14T16:13:49,405 ############################ 2024-04-14T16:13:49,406 Python recognizes 'mdapy.voronoi' as an importable package[^1], 2024-04-14T16:13:49,407 but it is absent from setuptools' `packages` configuration. 2024-04-14T16:13:49,408 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-14T16:13:49,409 package, please make sure that 'mdapy.voronoi' is explicitly added 2024-04-14T16:13:49,409 to the `packages` configuration field. 2024-04-14T16:13:49,410 Alternatively, you can also rely on setuptools' discovery methods 2024-04-14T16:13:49,411 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-14T16:13:49,411 instead of `find_packages(...)`/`find:`). 2024-04-14T16:13:49,413 You can read more about "package discovery" on setuptools documentation page: 2024-04-14T16:13:49,414 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-14T16:13:49,415 If you don't want 'mdapy.voronoi' to be distributed and are 2024-04-14T16:13:49,415 already explicitly excluding 'mdapy.voronoi' via 2024-04-14T16:13:49,416 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-14T16:13:49,416 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-14T16:13:49,417 combination with a more fine grained `package-data` configuration. 2024-04-14T16:13:49,418 You can read more about "package data files" on setuptools documentation page: 2024-04-14T16:13:49,419 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-14T16:13:49,421 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-14T16:13:49,422 even if it does not contain any `.py` files. 2024-04-14T16:13:49,422 On the other hand, currently there is no concept of package data 2024-04-14T16:13:49,423 directory, all directories are treated like packages. 2024-04-14T16:13:49,423 ******************************************************************************** 2024-04-14T16:13:49,424 !! 2024-04-14T16:13:49,424 check.warn(importable) 2024-04-14T16:13:49,425 creating build/lib.linux-armv7l-cpython-311/mdapy/cluster 2024-04-14T16:13:49,425 copying mdapy/cluster/_cluster.cpp -> build/lib.linux-armv7l-cpython-311/mdapy/cluster 2024-04-14T16:13:49,426 creating build/lib.linux-armv7l-cpython-311/mdapy/neigh 2024-04-14T16:13:49,426 copying mdapy/neigh/_neigh.cpp -> build/lib.linux-armv7l-cpython-311/mdapy/neigh 2024-04-14T16:13:49,426 creating build/lib.linux-armv7l-cpython-311/mdapy/nep 2024-04-14T16:13:49,427 copying mdapy/nep/_nep.cpp -> build/lib.linux-armv7l-cpython-311/mdapy/nep 2024-04-14T16:13:49,427 creating build/lib.linux-armv7l-cpython-311/mdapy/ptm 2024-04-14T16:13:49,428 copying mdapy/ptm/_ptm.cpp -> build/lib.linux-armv7l-cpython-311/mdapy/ptm 2024-04-14T16:13:49,428 creating build/lib.linux-armv7l-cpython-311/mdapy/rdf 2024-04-14T16:13:49,428 copying mdapy/rdf/_rdf.cpp -> build/lib.linux-armv7l-cpython-311/mdapy/rdf 2024-04-14T16:13:49,429 creating build/lib.linux-armv7l-cpython-311/mdapy/voronoi 2024-04-14T16:13:49,429 copying mdapy/voronoi/_voro.cpp -> build/lib.linux-armv7l-cpython-311/mdapy/voronoi 2024-04-14T16:13:49,430 running build_ext 2024-04-14T16:13:49,431 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c flagcheck.cpp -o flagcheck.o -std=c++17 2024-04-14T16:13:49,468 building '_cluster_analysis' extension 2024-04-14T16:13:49,469 creating build/temp.linux-armv7l-cpython-311 2024-04-14T16:13:49,469 creating build/temp.linux-armv7l-cpython-311/mdapy 2024-04-14T16:13:49,470 creating build/temp.linux-armv7l-cpython-311/mdapy/cluster 2024-04-14T16:13:49,474 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/cluster/_cluster.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/cluster/_cluster.o -std=c++17 -fvisibility=hidden -g0 2024-04-14T16:14:09,606 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/cluster/_cluster.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_cluster_analysis.cpython-311-arm-linux-gnueabihf.so 2024-04-14T16:14:09,871 building '_voronoi_analysis' extension 2024-04-14T16:14:09,872 creating build/temp.linux-armv7l-cpython-311/mdapy/voronoi 2024-04-14T16:14:09,872 creating build/temp.linux-armv7l-cpython-311/thirdparty 2024-04-14T16:14:09,873 creating build/temp.linux-armv7l-cpython-311/thirdparty/voro++ 2024-04-14T16:14:09,877 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/voro++ -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/voro++/voro++.cc -o build/temp.linux-armv7l-cpython-311/thirdparty/voro++/voro++.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:09,878 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/voro++ -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/voronoi/_voro.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/voronoi/_voro.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:11,213 In file included from thirdparty/voro++/container_2d.cc:10, 2024-04-14T16:14:11,215 from thirdparty/voro++/voro++.cc:10: 2024-04-14T16:14:11,215 thirdparty/voro++/iter_2d.hh:16:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,216 16 | class container_base_2d::iterator : public std::iterator { 2024-04-14T16:14:11,217 | ^~~~~~~~ 2024-04-14T16:14:11,218 In file included from /usr/include/c++/12/bits/stl_algobase.h:65, 2024-04-14T16:14:11,218 from /usr/include/c++/12/vector:60, 2024-04-14T16:14:11,219 from thirdparty/voro++/cell_2d.hh:11, 2024-04-14T16:14:11,220 from thirdparty/voro++/cell_2d.cc:7, 2024-04-14T16:14:11,221 from thirdparty/voro++/voro++.cc:7: 2024-04-14T16:14:11,222 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,222 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,223 | ^~~~~~~~ 2024-04-14T16:14:11,224 thirdparty/voro++/iter_2d.hh:21:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,225 21 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,226 | ^~~~~~~~ 2024-04-14T16:14:11,227 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,228 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,228 | ^~~~~~~~ 2024-04-14T16:14:11,229 thirdparty/voro++/iter_2d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,230 22 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,231 | ^~~~~~~~ 2024-04-14T16:14:11,232 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,233 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,234 | ^~~~~~~~ 2024-04-14T16:14:11,235 thirdparty/voro++/iter_2d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,236 23 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,237 | ^~~~~~~~ 2024-04-14T16:14:11,238 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,239 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,241 | ^~~~~~~~ 2024-04-14T16:14:11,245 thirdparty/voro++/iter_2d.hh:153:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,246 153 | class container_base_2d::iterator_subset : public std::iterator { 2024-04-14T16:14:11,247 | ^~~~~~~~ 2024-04-14T16:14:11,248 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,250 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,251 | ^~~~~~~~ 2024-04-14T16:14:11,252 thirdparty/voro++/iter_2d.hh:155:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,253 155 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,254 | ^~~~~~~~ 2024-04-14T16:14:11,255 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,255 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,256 | ^~~~~~~~ 2024-04-14T16:14:11,257 thirdparty/voro++/iter_2d.hh:156:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,257 156 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,258 | ^~~~~~~~ 2024-04-14T16:14:11,259 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,259 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,260 | ^~~~~~~~ 2024-04-14T16:14:11,261 thirdparty/voro++/iter_2d.hh:157:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,261 157 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,262 | ^~~~~~~~ 2024-04-14T16:14:11,263 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,264 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,265 | ^~~~~~~~ 2024-04-14T16:14:11,269 thirdparty/voro++/iter_2d.hh:246:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,270 246 | class container_base_2d::iterator_order : public std::iterator { 2024-04-14T16:14:11,270 | ^~~~~~~~ 2024-04-14T16:14:11,271 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,272 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,273 | ^~~~~~~~ 2024-04-14T16:14:11,274 thirdparty/voro++/iter_2d.hh:248:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,274 248 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,275 | ^~~~~~~~ 2024-04-14T16:14:11,276 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,277 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,278 | ^~~~~~~~ 2024-04-14T16:14:11,278 thirdparty/voro++/iter_2d.hh:249:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,279 249 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,280 | ^~~~~~~~ 2024-04-14T16:14:11,281 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,282 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,282 | ^~~~~~~~ 2024-04-14T16:14:11,283 thirdparty/voro++/iter_2d.hh:250:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,283 250 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,284 | ^~~~~~~~ 2024-04-14T16:14:11,285 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,285 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,286 | ^~~~~~~~ 2024-04-14T16:14:11,401 In file included from thirdparty/voro++/container_3d.cc:10, 2024-04-14T16:14:11,402 from thirdparty/voro++/voro++.cc:11: 2024-04-14T16:14:11,403 thirdparty/voro++/iter_3d.hh:17:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,404 17 | class container_base_3d::iterator : public std::iterator { 2024-04-14T16:14:11,405 | ^~~~~~~~ 2024-04-14T16:14:11,406 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,406 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,407 | ^~~~~~~~ 2024-04-14T16:14:11,408 thirdparty/voro++/iter_3d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,409 22 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,409 | ^~~~~~~~ 2024-04-14T16:14:11,410 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,411 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,412 | ^~~~~~~~ 2024-04-14T16:14:11,413 thirdparty/voro++/iter_3d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,414 23 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,414 | ^~~~~~~~ 2024-04-14T16:14:11,415 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,416 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,417 | ^~~~~~~~ 2024-04-14T16:14:11,417 thirdparty/voro++/iter_3d.hh:24:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,418 24 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,419 | ^~~~~~~~ 2024-04-14T16:14:11,420 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,420 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,421 | ^~~~~~~~ 2024-04-14T16:14:11,424 thirdparty/voro++/iter_3d.hh:159:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,425 159 | class container_base_3d::iterator_subset : public std::iterator { 2024-04-14T16:14:11,426 | ^~~~~~~~ 2024-04-14T16:14:11,427 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,427 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,428 | ^~~~~~~~ 2024-04-14T16:14:11,429 thirdparty/voro++/iter_3d.hh:161:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,429 161 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,430 | ^~~~~~~~ 2024-04-14T16:14:11,430 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,431 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,432 | ^~~~~~~~ 2024-04-14T16:14:11,432 thirdparty/voro++/iter_3d.hh:162:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,433 162 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,434 | ^~~~~~~~ 2024-04-14T16:14:11,434 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,435 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,436 | ^~~~~~~~ 2024-04-14T16:14:11,436 thirdparty/voro++/iter_3d.hh:163:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,437 163 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,438 | ^~~~~~~~ 2024-04-14T16:14:11,439 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,440 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,441 | ^~~~~~~~ 2024-04-14T16:14:11,445 thirdparty/voro++/iter_3d.hh:252:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,447 252 | class container_base_3d::iterator_order : public std::iterator { 2024-04-14T16:14:11,468 | ^~~~~~~~ 2024-04-14T16:14:11,469 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,470 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,471 | ^~~~~~~~ 2024-04-14T16:14:11,471 thirdparty/voro++/iter_3d.hh:254:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,472 254 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,473 | ^~~~~~~~ 2024-04-14T16:14:11,474 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,474 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,475 | ^~~~~~~~ 2024-04-14T16:14:11,476 thirdparty/voro++/iter_3d.hh:255:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,477 255 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,478 | ^~~~~~~~ 2024-04-14T16:14:11,479 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,479 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,480 | ^~~~~~~~ 2024-04-14T16:14:11,481 thirdparty/voro++/iter_3d.hh:256:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,481 256 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,482 | ^~~~~~~~ 2024-04-14T16:14:11,483 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,484 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,484 | ^~~~~~~~ 2024-04-14T16:14:11,485 thirdparty/voro++/iter_3d.hh:365:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,486 365 | class container_triclinic_base::iterator : public std::iterator 2024-04-14T16:14:11,487 | ^~~~~~~~ 2024-04-14T16:14:11,487 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,488 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,489 | ^~~~~~~~ 2024-04-14T16:14:11,490 thirdparty/voro++/iter_3d.hh:378:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,490 378 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,491 | ^~~~~~~~ 2024-04-14T16:14:11,492 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,493 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,494 | ^~~~~~~~ 2024-04-14T16:14:11,494 thirdparty/voro++/iter_3d.hh:379:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,495 379 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,496 | ^~~~~~~~ 2024-04-14T16:14:11,496 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,497 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,498 | ^~~~~~~~ 2024-04-14T16:14:11,499 thirdparty/voro++/iter_3d.hh:380:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,499 380 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,500 | ^~~~~~~~ 2024-04-14T16:14:11,501 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,502 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,503 | ^~~~~~~~ 2024-04-14T16:14:11,504 thirdparty/voro++/iter_3d.hh:450:62: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,505 450 | class container_triclinic_base::iterator_order : public std::iterator 2024-04-14T16:14:11,505 | ^~~~~~~~ 2024-04-14T16:14:11,506 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,507 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,507 | ^~~~~~~~ 2024-04-14T16:14:11,508 thirdparty/voro++/iter_3d.hh:458:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,509 458 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,510 | ^~~~~~~~ 2024-04-14T16:14:11,510 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,511 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,512 | ^~~~~~~~ 2024-04-14T16:14:11,513 thirdparty/voro++/iter_3d.hh:459:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,514 459 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,515 | ^~~~~~~~ 2024-04-14T16:14:11,517 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,517 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,518 | ^~~~~~~~ 2024-04-14T16:14:11,519 thirdparty/voro++/iter_3d.hh:460:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,519 460 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,521 | ^~~~~~~~ 2024-04-14T16:14:11,522 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,523 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,524 | ^~~~~~~~ 2024-04-14T16:14:11,525 In file included from thirdparty/voro++/voro++.hh:337, 2024-04-14T16:14:11,526 from mdapy/voronoi/_voro.cpp:6: 2024-04-14T16:14:11,527 thirdparty/voro++/iter_2d.hh:16:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,529 16 | class container_base_2d::iterator : public std::iterator { 2024-04-14T16:14:11,530 | ^~~~~~~~ 2024-04-14T16:14:11,571 In file included from /usr/include/c++/12/bits/stl_algobase.h:65, 2024-04-14T16:14:11,572 from /usr/include/c++/12/vector:60, 2024-04-14T16:14:11,572 from thirdparty/voro++/common.hh:12, 2024-04-14T16:14:11,573 from thirdparty/voro++/voro++.hh:318: 2024-04-14T16:14:11,574 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,575 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,576 | ^~~~~~~~ 2024-04-14T16:14:11,576 thirdparty/voro++/iter_2d.hh:21:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,577 21 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,578 | ^~~~~~~~ 2024-04-14T16:14:11,578 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,579 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,580 | ^~~~~~~~ 2024-04-14T16:14:11,580 thirdparty/voro++/iter_2d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,581 22 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,582 | ^~~~~~~~ 2024-04-14T16:14:11,583 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,583 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,584 | ^~~~~~~~ 2024-04-14T16:14:11,585 thirdparty/voro++/iter_2d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,585 23 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,586 | ^~~~~~~~ 2024-04-14T16:14:11,587 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,587 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,588 | ^~~~~~~~ 2024-04-14T16:14:11,589 thirdparty/voro++/iter_2d.hh:153:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,590 153 | class container_base_2d::iterator_subset : public std::iterator { 2024-04-14T16:14:11,591 | ^~~~~~~~ 2024-04-14T16:14:11,591 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,592 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,593 | ^~~~~~~~ 2024-04-14T16:14:11,594 thirdparty/voro++/iter_2d.hh:155:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,595 155 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,595 | ^~~~~~~~ 2024-04-14T16:14:11,596 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,597 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,598 | ^~~~~~~~ 2024-04-14T16:14:11,599 thirdparty/voro++/iter_2d.hh:156:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,599 156 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,600 | ^~~~~~~~ 2024-04-14T16:14:11,601 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,602 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,603 | ^~~~~~~~ 2024-04-14T16:14:11,604 thirdparty/voro++/iter_2d.hh:157:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,604 157 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,605 | ^~~~~~~~ 2024-04-14T16:14:11,606 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,607 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,607 | ^~~~~~~~ 2024-04-14T16:14:11,609 thirdparty/voro++/iter_2d.hh:246:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,609 246 | class container_base_2d::iterator_order : public std::iterator { 2024-04-14T16:14:11,611 | ^~~~~~~~ 2024-04-14T16:14:11,612 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,613 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,614 | ^~~~~~~~ 2024-04-14T16:14:11,615 thirdparty/voro++/iter_2d.hh:248:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,616 248 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,617 | ^~~~~~~~ 2024-04-14T16:14:11,618 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,619 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,621 | ^~~~~~~~ 2024-04-14T16:14:11,661 thirdparty/voro++/iter_2d.hh:249:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,662 249 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,663 | ^~~~~~~~ 2024-04-14T16:14:11,664 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,665 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,665 | ^~~~~~~~ 2024-04-14T16:14:11,666 thirdparty/voro++/iter_2d.hh:250:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,667 250 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,668 | ^~~~~~~~ 2024-04-14T16:14:11,668 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,669 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,670 | ^~~~~~~~ 2024-04-14T16:14:11,671 In file included from thirdparty/voro++/voro++.hh:338: 2024-04-14T16:14:11,672 thirdparty/voro++/iter_3d.hh:17:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,673 17 | class container_base_3d::iterator : public std::iterator { 2024-04-14T16:14:11,674 | ^~~~~~~~ 2024-04-14T16:14:11,675 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,675 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,676 | ^~~~~~~~ 2024-04-14T16:14:11,676 thirdparty/voro++/iter_3d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,677 22 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,678 | ^~~~~~~~ 2024-04-14T16:14:11,679 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,679 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,680 | ^~~~~~~~ 2024-04-14T16:14:11,681 thirdparty/voro++/iter_3d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,682 23 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,682 | ^~~~~~~~ 2024-04-14T16:14:11,683 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,684 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,685 | ^~~~~~~~ 2024-04-14T16:14:11,686 thirdparty/voro++/iter_3d.hh:24:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,686 24 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,687 | ^~~~~~~~ 2024-04-14T16:14:11,688 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,689 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,689 | ^~~~~~~~ 2024-04-14T16:14:11,690 thirdparty/voro++/iter_3d.hh:159:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,691 159 | class container_base_3d::iterator_subset : public std::iterator { 2024-04-14T16:14:11,692 | ^~~~~~~~ 2024-04-14T16:14:11,692 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,693 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,694 | ^~~~~~~~ 2024-04-14T16:14:11,694 thirdparty/voro++/iter_3d.hh:161:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,695 161 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,696 | ^~~~~~~~ 2024-04-14T16:14:11,697 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,698 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,699 | ^~~~~~~~ 2024-04-14T16:14:11,700 thirdparty/voro++/iter_3d.hh:162:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,701 162 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,702 | ^~~~~~~~ 2024-04-14T16:14:11,703 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,704 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,705 | ^~~~~~~~ 2024-04-14T16:14:11,706 thirdparty/voro++/iter_3d.hh:163:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,707 163 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,708 | ^~~~~~~~ 2024-04-14T16:14:11,709 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,710 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,711 | ^~~~~~~~ 2024-04-14T16:14:11,712 thirdparty/voro++/iter_3d.hh:252:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,713 252 | class container_base_3d::iterator_order : public std::iterator { 2024-04-14T16:14:11,714 | ^~~~~~~~ 2024-04-14T16:14:11,715 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,717 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,718 | ^~~~~~~~ 2024-04-14T16:14:11,719 thirdparty/voro++/iter_3d.hh:254:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,720 254 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,722 | ^~~~~~~~ 2024-04-14T16:14:11,723 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,724 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,725 | ^~~~~~~~ 2024-04-14T16:14:11,727 thirdparty/voro++/iter_3d.hh:255:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,728 255 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,729 | ^~~~~~~~ 2024-04-14T16:14:11,730 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,732 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,733 | ^~~~~~~~ 2024-04-14T16:14:11,734 thirdparty/voro++/iter_3d.hh:256:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,736 256 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,737 | ^~~~~~~~ 2024-04-14T16:14:11,739 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,740 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,740 | ^~~~~~~~ 2024-04-14T16:14:11,741 thirdparty/voro++/iter_3d.hh:365:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,742 365 | class container_triclinic_base::iterator : public std::iterator 2024-04-14T16:14:11,743 | ^~~~~~~~ 2024-04-14T16:14:11,744 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,744 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,745 | ^~~~~~~~ 2024-04-14T16:14:11,746 thirdparty/voro++/iter_3d.hh:378:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,746 378 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,747 | ^~~~~~~~ 2024-04-14T16:14:11,748 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,748 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,749 | ^~~~~~~~ 2024-04-14T16:14:11,750 thirdparty/voro++/iter_3d.hh:379:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,751 379 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,751 | ^~~~~~~~ 2024-04-14T16:14:11,752 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,753 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,754 | ^~~~~~~~ 2024-04-14T16:14:11,755 thirdparty/voro++/iter_3d.hh:380:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,756 380 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,757 | ^~~~~~~~ 2024-04-14T16:14:11,758 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,759 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,761 | ^~~~~~~~ 2024-04-14T16:14:11,762 thirdparty/voro++/iter_3d.hh:450:62: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,763 450 | class container_triclinic_base::iterator_order : public std::iterator 2024-04-14T16:14:11,764 | ^~~~~~~~ 2024-04-14T16:14:11,765 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,766 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,767 | ^~~~~~~~ 2024-04-14T16:14:11,768 thirdparty/voro++/iter_3d.hh:458:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,769 458 | typedef typename std::iterator::pointer pointer; 2024-04-14T16:14:11,770 | ^~~~~~~~ 2024-04-14T16:14:11,771 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,772 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,773 | ^~~~~~~~ 2024-04-14T16:14:11,774 thirdparty/voro++/iter_3d.hh:459:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,775 459 | typedef typename std::iterator::reference reference; 2024-04-14T16:14:11,776 | ^~~~~~~~ 2024-04-14T16:14:11,778 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,778 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,779 | ^~~~~~~~ 2024-04-14T16:14:11,780 thirdparty/voro++/iter_3d.hh:460:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2024-04-14T16:14:11,781 460 | typedef typename std::iterator::difference_type difference_type; 2024-04-14T16:14:11,781 | ^~~~~~~~ 2024-04-14T16:14:11,782 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2024-04-14T16:14:11,783 127 | struct _GLIBCXX17_DEPRECATED iterator 2024-04-14T16:14:11,784 | ^~~~~~~~ 2024-04-14T16:14:17,257 mdapy/voronoi/_voro.cpp: In function ‘std::tuple >, std::allocator > > >, std::allocator >, std::allocator > > > > >, std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >, std::vector >, std::vector >, std::vector >, std::allocator > > > > get_cell_info(pybind11::array, pybind11::array, pybind11::array, int)’: 2024-04-14T16:14:17,258 mdapy/voronoi/_voro.cpp:114:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2024-04-14T16:14:17,259 114 | while (j < face_index_vector.size()) 2024-04-14T16:14:17,260 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-14T16:14:41,508 In file included from /usr/include/c++/12/vector:70: 2024-04-14T16:14:41,509 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2024-04-14T16:14:41,509 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2024-04-14T16:14:41,510 439 | vector<_Tp, _Alloc>:: 2024-04-14T16:14:41,511 | ^~~~~~~~~~~~~~~~~~~ 2024-04-14T16:14:52,717 In file included from /usr/include/c++/12/vector:64: 2024-04-14T16:14:52,718 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2024-04-14T16:14:52,719 inlined from ‘void voro::unitcell::images(std::vector&, std::vector&)’ at thirdparty/voro++/unitcell.cc:147:25: 2024-04-14T16:14:52,719 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-04-14T16:14:52,720 1287 | _M_realloc_insert(end(), __x); 2024-04-14T16:14:52,721 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2024-04-14T16:14:53,503 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/voronoi/_voro.o build/temp.linux-armv7l-cpython-311/thirdparty/voro++/voro++.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_voronoi_analysis.cpython-311-arm-linux-gnueabihf.so -fopenmp 2024-04-14T16:14:53,863 building '_ptm' extension 2024-04-14T16:14:53,864 creating build/temp.linux-armv7l-cpython-311/mdapy/ptm 2024-04-14T16:14:53,865 creating build/temp.linux-armv7l-cpython-311/thirdparty/ptm 2024-04-14T16:14:53,869 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/ptm/_ptm.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/ptm/_ptm.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:53,870 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_canonical_coloured.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_canonical_coloured.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:53,871 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_constants.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_constants.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:53,871 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_alloy_types.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_alloy_types.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:53,990 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_convex_hull_incremental.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_convex_hull_incremental.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:54,740 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_deformation_gradient.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_deformation_gradient.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:55,510 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_graph_data.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_graph_data.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:55,631 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_graph_tools.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_graph_tools.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:55,892 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_index.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_index.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:55,948 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_initialize_data.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_initialize_data.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:56,329 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_neighbour_ordering.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_neighbour_ordering.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:56,968 thirdparty/ptm/ptm_initialize_data.cpp: In function ‘int initialize_graphs(const ptm::refdata_t*, int8_t*)’: 2024-04-14T16:14:56,969 thirdparty/ptm/ptm_initialize_data.cpp:34:21: warning: unused variable ‘_max_degree’ [-Wunused-variable] 2024-04-14T16:14:56,970 34 | int _max_degree = ptm::graph_degree(s->num_facets, s->graphs[i].facets, s->num_nbrs, degree); 2024-04-14T16:14:56,971 | ^~~~~~~~~~~ 2024-04-14T16:14:57,287 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_normalize_vertices.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_normalize_vertices.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:57,634 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_polar.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_polar.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:58,442 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_quat.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_quat.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:14:59,579 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_structure_matcher.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_structure_matcher.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:15:00,038 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_voronoi_cell.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_voronoi_cell.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2024-04-14T16:15:02,750 mdapy/ptm/_ptm.cpp: In function ‘void get_ptm(char*, double_py, int_py, pybind11::array_t, pybind11::array_t, pybind11::array_t, double, pybind11::array)’: 2024-04-14T16:15:02,751 mdapy/ptm/_ptm.cpp:102:14: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 2024-04-14T16:15:02,751 102 | bool found = false; 2024-04-14T16:15:02,752 | ^~~~~ 2024-04-14T16:15:05,013 In file included from /usr/include/c++/12/vector:70, 2024-04-14T16:15:05,014 from thirdparty/ptm/ptm_voronoi_cell.h:59, 2024-04-14T16:15:05,015 from thirdparty/ptm/ptm_voronoi_cell.cpp:59: 2024-04-14T16:15:05,015 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2024-04-14T16:15:05,016 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2024-04-14T16:15:05,017 439 | vector<_Tp, _Alloc>:: 2024-04-14T16:15:05,018 | ^~~~~~~~~~~~~~~~~~~ 2024-04-14T16:15:05,091 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2024-04-14T16:15:05,092 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2024-04-14T16:15:05,093 inlined from ‘void ptm_voro::voronoicell_base::face_areas(std::vector&)’ at thirdparty/ptm/ptm_voronoi_cell.cpp:1251:36: 2024-04-14T16:15:05,094 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2024-04-14T16:15:05,095 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2024-04-14T16:15:05,095 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-14T16:15:18,004 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/ptm/_ptm.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_alloy_types.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_canonical_coloured.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_constants.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_convex_hull_incremental.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_deformation_gradient.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_graph_data.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_graph_tools.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_index.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_initialize_data.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_neighbour_ordering.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_normalize_vertices.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_polar.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_quat.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_structure_matcher.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_voronoi_cell.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_ptm.cpython-311-arm-linux-gnueabihf.so -fopenmp 2024-04-14T16:15:18,310 building '_nep' extension 2024-04-14T16:15:18,310 creating build/temp.linux-armv7l-cpython-311/mdapy/nep 2024-04-14T16:15:18,311 creating build/temp.linux-armv7l-cpython-311/thirdparty/nep 2024-04-14T16:15:18,315 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/nep -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/nep/_nep.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/nep/_nep.o -std=c++17 -fvisibility=hidden -g0 2024-04-14T16:15:18,315 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/nep -I/tmp/pip-build-env-um2q_mer/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/nep/nep.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/nep/nep.o -std=c++17 -fvisibility=hidden -g0 2024-04-14T16:15:18,373 mdapy/nep/_nep.cpp:4:10: fatal error: nep.h: No such file or directory 2024-04-14T16:15:18,374 4 | #include "nep.h" 2024-04-14T16:15:18,374 | ^~~~~~~ 2024-04-14T16:15:18,375 compilation terminated. 2024-04-14T16:15:18,376 thirdparty/nep/nep.cpp:23:10: fatal error: nep.h: No such file or directory 2024-04-14T16:15:18,376 23 | #include "nep.h" 2024-04-14T16:15:18,377 | ^~~~~~~ 2024-04-14T16:15:18,378 compilation terminated. 2024-04-14T16:15:18,381 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2024-04-14T16:15:18,523 ERROR: Building wheel for mdapy (pyproject.toml) exited with 1 2024-04-14T16:15:18,540 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmptm3hzv5_[/] 2024-04-14T16:15:18,540 [bold magenta]cwd[/]: /tmp/pip-wheel-f1edro3l/mdapy_d9e5fc6ade8a4f8387e71c17ea4fdc4c 2024-04-14T16:15:18,541 Building wheel for mdapy (pyproject.toml): finished with status 'error' 2024-04-14T16:15:18,543 ERROR: Failed building wheel for mdapy 2024-04-14T16:15:18,546 Failed to build mdapy 2024-04-14T16:15:18,547 ERROR: Failed to build one or more wheels 2024-04-14T16:15:18,548 Exception information: 2024-04-14T16:15:18,548 Traceback (most recent call last): 2024-04-14T16:15:18,548 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2024-04-14T16:15:18,548 status = run_func(*args) 2024-04-14T16:15:18,548 ^^^^^^^^^^^^^^^ 2024-04-14T16:15:18,548 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2024-04-14T16:15:18,548 return func(self, options, args) 2024-04-14T16:15:18,548 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-04-14T16:15:18,548 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2024-04-14T16:15:18,548 raise CommandError("Failed to build one or more wheels") 2024-04-14T16:15:18,548 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2024-04-14T16:15:18,553 Removed build tracker: '/tmp/pip-build-tracker-9q3cr0hh'