2024-04-18T10:34:38,824 Created temporary directory: /tmp/pip-build-tracker-vgzl15q0 2024-04-18T10:34:38,825 Initialized build tracking at /tmp/pip-build-tracker-vgzl15q0 2024-04-18T10:34:38,826 Created build tracker: /tmp/pip-build-tracker-vgzl15q0 2024-04-18T10:34:38,826 Entered build tracker: /tmp/pip-build-tracker-vgzl15q0 2024-04-18T10:34:38,827 Created temporary directory: /tmp/pip-wheel-2sn3zix1 2024-04-18T10:34:38,830 Created temporary directory: /tmp/pip-ephem-wheel-cache-1c8a7nar 2024-04-18T10:34:38,852 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-18T10:34:38,855 2 location(s) to search for versions of nnunetv2: 2024-04-18T10:34:38,855 * https://pypi.org/simple/nnunetv2/ 2024-04-18T10:34:38,855 * https://www.piwheels.org/simple/nnunetv2/ 2024-04-18T10:34:38,856 Fetching project page and analyzing links: https://pypi.org/simple/nnunetv2/ 2024-04-18T10:34:38,856 Getting page https://pypi.org/simple/nnunetv2/ 2024-04-18T10:34:38,858 Found index url https://pypi.org/simple/ 2024-04-18T10:34:39,073 Fetched page https://pypi.org/simple/nnunetv2/ as application/vnd.pypi.simple.v1+json 2024-04-18T10:34:39,076 Found link https://files.pythonhosted.org/packages/e9/76/b07d94295b8680333c267420cb8fe68780c1f0330b01f83de221e14398f8/nnunetv2-2.0.tar.gz (from https://pypi.org/simple/nnunetv2/), version: 2.0 2024-04-18T10:34:39,077 Found link https://files.pythonhosted.org/packages/ec/d6/1db7ccf9b55e60ef9f1201ce7086b69dc87e4a0ace0a9779d7763097ff4f/nnunetv2-2.1.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.1 2024-04-18T10:34:39,078 Found link https://files.pythonhosted.org/packages/75/0c/970bded1a4462ac6dfe97aaa8cfe2ae96e24597d26da6a3d7be829832bb3/nnunetv2-2.1.2.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.1.2 2024-04-18T10:34:39,078 Found link https://files.pythonhosted.org/packages/23/ec/d5a80410ed705da963c4df59ae27bea4d28ca2861949275751c2087706c2/nnunetv2-2.2.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.2 2024-04-18T10:34:39,079 Found link https://files.pythonhosted.org/packages/cc/34/e089ded4d1fbe0dabca3f5c23b47c73c3ace4c5666cb5fdaeb2083a28e62/nnunetv2-2.2.1.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.2.1 2024-04-18T10:34:39,080 Skipping link: No binaries permitted for nnunetv2: https://files.pythonhosted.org/packages/e8/d5/cac9ff935351af33fa3c65ad5c24435d38425fbec420fc40af8397eb0134/nnunetv2-2.2.2-py3-none-any.whl (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-18T10:34:39,081 Found link https://files.pythonhosted.org/packages/dd/39/eb52587961d684992f454bd08be0afa495e6b25a75a4c20001401c7c3f00/nnunetv2-2.2.2.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.2.2 2024-04-18T10:34:39,082 Found link https://files.pythonhosted.org/packages/e1/fd/a92675fb9f266be88eb06db41813021cbcb22af7ca384f8442343bfa050c/nnunetv2-2.3.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.3 2024-04-18T10:34:39,083 Found link https://files.pythonhosted.org/packages/86/d6/7288221cfb95b5b2453c55dc50bbb9843ef1706039da76e41efef850539a/nnunetv2-2.3.1.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.3.1 2024-04-18T10:34:39,084 Found link https://files.pythonhosted.org/packages/a3/f1/b35bb040e3c46f0041aa7a39f687117eadfb2bdd5f96536613398752da7a/nnunetv2-2.4.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.4 2024-04-18T10:34:39,085 Fetching project page and analyzing links: https://www.piwheels.org/simple/nnunetv2/ 2024-04-18T10:34:39,086 Getting page https://www.piwheels.org/simple/nnunetv2/ 2024-04-18T10:34:39,087 Found index url https://www.piwheels.org/simple/ 2024-04-18T10:34:39,279 Fetched page https://www.piwheels.org/simple/nnunetv2/ as text/html 2024-04-18T10:34:39,282 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.3.1-py3-none-any.whl#sha256=8a157ab8d25b32771a67e272e64fa8dbb2aa5e70f2b6a4f58810eabe98a6bb6b (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-18T10:34:39,283 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.3-py3-none-any.whl#sha256=3a5d671ead32c5efc273b3ac522963b258900dcad9465d980446750ff4329275 (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-18T10:34:39,284 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.2.2-py3-none-any.whl#sha256=04c98805751a155047b961fc65c37582ed9b9804cbc628bd7bca38cf3ba1cd4f (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-18T10:34:39,285 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.2.1-py3-none-any.whl#sha256=382d4f06ffe8d21ba4a15b6b278570a58b5185ddeec2b4840185f5fe6bc1faad (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-18T10:34:39,285 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.2-py3-none-any.whl#sha256=cead7a9af00a7bae7c46333d240c36c082516e6c2449992d0310326d844c0bd7 (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-18T10:34:39,285 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.1.2-py3-none-any.whl#sha256=cbd7dda5e9ec83dff80a22a1493aee15145e11cabc0783dd921d613484f08b77 (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-18T10:34:39,286 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.1-py3-none-any.whl#sha256=1aaa6b18e813f011d50ac92dd2b1a35512438d54a3dd7d63dc8dee150c5ab3ee (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-18T10:34:39,286 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.0-py3-none-any.whl#sha256=fdacc5b6c5ae86113368c37f25e21643894052a24c65235ffff6c37a0d1a7b31 (from https://www.piwheels.org/simple/nnunetv2/) 2024-04-18T10:34:39,287 Skipping link: not a file: https://www.piwheels.org/simple/nnunetv2/ 2024-04-18T10:34:39,287 Skipping link: not a file: https://pypi.org/simple/nnunetv2/ 2024-04-18T10:34:39,307 Given no hashes to check 1 links for project 'nnunetv2': discarding no candidates 2024-04-18T10:34:39,325 Collecting nnunetv2==2.4 2024-04-18T10:34:39,327 Created temporary directory: /tmp/pip-unpack-us2_t_lk 2024-04-18T10:34:39,544 Downloading nnunetv2-2.4.tar.gz (183 kB) 2024-04-18T10:34:39,965 Added nnunetv2==2.4 from https://files.pythonhosted.org/packages/a3/f1/b35bb040e3c46f0041aa7a39f687117eadfb2bdd5f96536613398752da7a/nnunetv2-2.4.tar.gz to build tracker '/tmp/pip-build-tracker-vgzl15q0' 2024-04-18T10:34:39,971 Created temporary directory: /tmp/pip-build-env-_8hy0n8q 2024-04-18T10:34:39,975 Installing build dependencies: started 2024-04-18T10:34:39,976 Running command pip subprocess to install build dependencies 2024-04-18T10:34:41,161 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-18T10:34:41,667 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-18T10:34:43,292 Collecting setuptools>=67.8.0 2024-04-18T10:34:43,307 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-04-18T10:34:45,954 Installing collected packages: setuptools 2024-04-18T10:34:48,403 Successfully installed setuptools-69.5.1 2024-04-18T10:34:48,889 Installing build dependencies: finished with status 'done' 2024-04-18T10:34:48,892 Getting requirements to build wheel: started 2024-04-18T10:34:48,893 Running command Getting requirements to build wheel 2024-04-18T10:34:49,740 running egg_info 2024-04-18T10:34:49,744 writing nnunetv2.egg-info/PKG-INFO 2024-04-18T10:34:49,750 writing dependency_links to nnunetv2.egg-info/dependency_links.txt 2024-04-18T10:34:49,753 writing entry points to nnunetv2.egg-info/entry_points.txt 2024-04-18T10:34:49,755 writing requirements to nnunetv2.egg-info/requires.txt 2024-04-18T10:34:49,762 writing top-level names to nnunetv2.egg-info/top_level.txt 2024-04-18T10:34:49,821 reading manifest file 'nnunetv2.egg-info/SOURCES.txt' 2024-04-18T10:34:49,827 adding license file 'LICENSE' 2024-04-18T10:34:49,836 writing manifest file 'nnunetv2.egg-info/SOURCES.txt' 2024-04-18T10:34:49,951 Getting requirements to build wheel: finished with status 'done' 2024-04-18T10:34:49,959 Installing backend dependencies: started 2024-04-18T10:34:49,960 Running command pip subprocess to install backend dependencies 2024-04-18T10:34:51,179 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-18T10:34:51,708 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-18T10:34:52,199 Collecting wheel 2024-04-18T10:34:52,225 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-18T10:34:54,501 Installing collected packages: wheel 2024-04-18T10:34:54,725 Creating /tmp/pip-build-env-_8hy0n8q/normal/local/bin 2024-04-18T10:34:54,727 changing mode of /tmp/pip-build-env-_8hy0n8q/normal/local/bin/wheel to 755 2024-04-18T10:34:54,739 Successfully installed wheel-0.43.0 2024-04-18T10:34:55,203 Installing backend dependencies: finished with status 'done' 2024-04-18T10:34:55,205 Created temporary directory: /tmp/pip-modern-metadata-lra7lvgd 2024-04-18T10:34:55,207 Preparing metadata (pyproject.toml): started 2024-04-18T10:34:55,208 Running command Preparing metadata (pyproject.toml) 2024-04-18T10:34:56,044 running dist_info 2024-04-18T10:34:56,049 creating /tmp/pip-modern-metadata-lra7lvgd/nnunetv2.egg-info 2024-04-18T10:34:56,052 writing /tmp/pip-modern-metadata-lra7lvgd/nnunetv2.egg-info/PKG-INFO 2024-04-18T10:34:56,057 writing dependency_links to /tmp/pip-modern-metadata-lra7lvgd/nnunetv2.egg-info/dependency_links.txt 2024-04-18T10:34:56,060 writing entry points to /tmp/pip-modern-metadata-lra7lvgd/nnunetv2.egg-info/entry_points.txt 2024-04-18T10:34:56,062 writing requirements to /tmp/pip-modern-metadata-lra7lvgd/nnunetv2.egg-info/requires.txt 2024-04-18T10:34:56,063 writing top-level names to /tmp/pip-modern-metadata-lra7lvgd/nnunetv2.egg-info/top_level.txt 2024-04-18T10:34:56,065 writing manifest file '/tmp/pip-modern-metadata-lra7lvgd/nnunetv2.egg-info/SOURCES.txt' 2024-04-18T10:34:56,132 reading manifest file '/tmp/pip-modern-metadata-lra7lvgd/nnunetv2.egg-info/SOURCES.txt' 2024-04-18T10:34:56,134 adding license file 'LICENSE' 2024-04-18T10:34:56,141 writing manifest file '/tmp/pip-modern-metadata-lra7lvgd/nnunetv2.egg-info/SOURCES.txt' 2024-04-18T10:34:56,142 creating '/tmp/pip-modern-metadata-lra7lvgd/nnunetv2-2.4.dist-info' 2024-04-18T10:34:56,301 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-18T10:34:56,308 Source in /tmp/pip-wheel-2sn3zix1/nnunetv2_60f79202f4584a6ba4a852fa0b9e1d24 has version 2.4, which satisfies requirement nnunetv2==2.4 from https://files.pythonhosted.org/packages/a3/f1/b35bb040e3c46f0041aa7a39f687117eadfb2bdd5f96536613398752da7a/nnunetv2-2.4.tar.gz 2024-04-18T10:34:56,309 Removed nnunetv2==2.4 from https://files.pythonhosted.org/packages/a3/f1/b35bb040e3c46f0041aa7a39f687117eadfb2bdd5f96536613398752da7a/nnunetv2-2.4.tar.gz from build tracker '/tmp/pip-build-tracker-vgzl15q0' 2024-04-18T10:34:56,319 Created temporary directory: /tmp/pip-unpack-sn2qusqo 2024-04-18T10:34:56,320 Created temporary directory: /tmp/pip-unpack-8vu4z4tf 2024-04-18T10:34:56,357 Building wheels for collected packages: nnunetv2 2024-04-18T10:34:56,362 Created temporary directory: /tmp/pip-wheel-wqlcr2yo 2024-04-18T10:34:56,362 Destination directory: /tmp/pip-wheel-wqlcr2yo 2024-04-18T10:34:56,364 Building wheel for nnunetv2 (pyproject.toml): started 2024-04-18T10:34:56,366 Running command Building wheel for nnunetv2 (pyproject.toml) 2024-04-18T10:34:57,160 running bdist_wheel 2024-04-18T10:34:57,176 running build 2024-04-18T10:34:57,177 running build_py 2024-04-18T10:34:57,181 creating build 2024-04-18T10:34:57,182 creating build/lib 2024-04-18T10:34:57,183 creating build/lib/nnunetv2 2024-04-18T10:34:57,185 copying nnunetv2/paths.py -> build/lib/nnunetv2 2024-04-18T10:34:57,187 copying nnunetv2/configuration.py -> build/lib/nnunetv2 2024-04-18T10:34:57,189 copying nnunetv2/__init__.py -> build/lib/nnunetv2 2024-04-18T10:34:57,191 creating build/lib/nnunetv2/experiment_planning 2024-04-18T10:34:57,192 copying nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/lib/nnunetv2/experiment_planning 2024-04-18T10:34:57,195 copying nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/lib/nnunetv2/experiment_planning 2024-04-18T10:34:57,197 copying nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/lib/nnunetv2/experiment_planning 2024-04-18T10:34:57,199 copying nnunetv2/experiment_planning/__init__.py -> build/lib/nnunetv2/experiment_planning 2024-04-18T10:34:57,201 creating build/lib/nnunetv2/model_sharing 2024-04-18T10:34:57,203 copying nnunetv2/model_sharing/model_export.py -> build/lib/nnunetv2/model_sharing 2024-04-18T10:34:57,205 copying nnunetv2/model_sharing/model_download.py -> build/lib/nnunetv2/model_sharing 2024-04-18T10:34:57,207 copying nnunetv2/model_sharing/entry_points.py -> build/lib/nnunetv2/model_sharing 2024-04-18T10:34:57,209 copying nnunetv2/model_sharing/__init__.py -> build/lib/nnunetv2/model_sharing 2024-04-18T10:34:57,211 copying nnunetv2/model_sharing/model_import.py -> build/lib/nnunetv2/model_sharing 2024-04-18T10:34:57,213 creating build/lib/nnunetv2/ensembling 2024-04-18T10:34:57,214 copying nnunetv2/ensembling/ensemble.py -> build/lib/nnunetv2/ensembling 2024-04-18T10:34:57,216 copying nnunetv2/ensembling/__init__.py -> build/lib/nnunetv2/ensembling 2024-04-18T10:34:57,218 creating build/lib/nnunetv2/run 2024-04-18T10:34:57,220 copying nnunetv2/run/load_pretrained_weights.py -> build/lib/nnunetv2/run 2024-04-18T10:34:57,222 copying nnunetv2/run/run_training.py -> build/lib/nnunetv2/run 2024-04-18T10:34:57,224 copying nnunetv2/run/__init__.py -> build/lib/nnunetv2/run 2024-04-18T10:34:57,226 creating build/lib/nnunetv2/tests 2024-04-18T10:34:57,227 copying nnunetv2/tests/__init__.py -> build/lib/nnunetv2/tests 2024-04-18T10:34:57,229 creating build/lib/nnunetv2/imageio 2024-04-18T10:34:57,231 copying nnunetv2/imageio/natural_image_reader_writer.py -> build/lib/nnunetv2/imageio 2024-04-18T10:34:57,233 copying nnunetv2/imageio/reader_writer_registry.py -> build/lib/nnunetv2/imageio 2024-04-18T10:34:57,235 copying nnunetv2/imageio/simpleitk_reader_writer.py -> build/lib/nnunetv2/imageio 2024-04-18T10:34:57,237 copying nnunetv2/imageio/__init__.py -> build/lib/nnunetv2/imageio 2024-04-18T10:34:57,239 copying nnunetv2/imageio/base_reader_writer.py -> build/lib/nnunetv2/imageio 2024-04-18T10:34:57,241 copying nnunetv2/imageio/nibabel_reader_writer.py -> build/lib/nnunetv2/imageio 2024-04-18T10:34:57,243 copying nnunetv2/imageio/tif_reader_writer.py -> build/lib/nnunetv2/imageio 2024-04-18T10:34:57,246 creating build/lib/nnunetv2/evaluation 2024-04-18T10:34:57,247 copying nnunetv2/evaluation/find_best_configuration.py -> build/lib/nnunetv2/evaluation 2024-04-18T10:34:57,250 copying nnunetv2/evaluation/evaluate_predictions.py -> build/lib/nnunetv2/evaluation 2024-04-18T10:34:57,253 copying nnunetv2/evaluation/accumulate_cv_results.py -> build/lib/nnunetv2/evaluation 2024-04-18T10:34:57,255 copying nnunetv2/evaluation/__init__.py -> build/lib/nnunetv2/evaluation 2024-04-18T10:34:57,257 creating build/lib/nnunetv2/training 2024-04-18T10:34:57,258 copying nnunetv2/training/__init__.py -> build/lib/nnunetv2/training 2024-04-18T10:34:57,261 creating build/lib/nnunetv2/preprocessing 2024-04-18T10:34:57,262 copying nnunetv2/preprocessing/__init__.py -> build/lib/nnunetv2/preprocessing 2024-04-18T10:34:57,264 creating build/lib/nnunetv2/batch_running 2024-04-18T10:34:57,265 copying nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/lib/nnunetv2/batch_running 2024-04-18T10:34:57,267 copying nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/lib/nnunetv2/batch_running 2024-04-18T10:34:57,270 copying nnunetv2/batch_running/__init__.py -> build/lib/nnunetv2/batch_running 2024-04-18T10:34:57,271 copying nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/lib/nnunetv2/batch_running 2024-04-18T10:34:57,274 creating build/lib/nnunetv2/postprocessing 2024-04-18T10:34:57,275 copying nnunetv2/postprocessing/remove_connected_components.py -> build/lib/nnunetv2/postprocessing 2024-04-18T10:34:57,278 copying nnunetv2/postprocessing/__init__.py -> build/lib/nnunetv2/postprocessing 2024-04-18T10:34:57,280 creating build/lib/nnunetv2/inference 2024-04-18T10:34:57,281 copying nnunetv2/inference/predict_from_raw_data.py -> build/lib/nnunetv2/inference 2024-04-18T10:34:57,284 copying nnunetv2/inference/examples.py -> build/lib/nnunetv2/inference 2024-04-18T10:34:57,287 copying nnunetv2/inference/sliding_window_prediction.py -> build/lib/nnunetv2/inference 2024-04-18T10:34:57,289 copying nnunetv2/inference/export_prediction.py -> build/lib/nnunetv2/inference 2024-04-18T10:34:57,291 copying nnunetv2/inference/data_iterators.py -> build/lib/nnunetv2/inference 2024-04-18T10:34:57,293 copying nnunetv2/inference/__init__.py -> build/lib/nnunetv2/inference 2024-04-18T10:34:57,296 creating build/lib/nnunetv2/utilities 2024-04-18T10:34:57,297 copying nnunetv2/utilities/ddp_allgather.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,299 copying nnunetv2/utilities/overlay_plots.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,302 copying nnunetv2/utilities/collate_outputs.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,304 copying nnunetv2/utilities/network_initialization.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,306 copying nnunetv2/utilities/crossval_split.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,307 copying nnunetv2/utilities/get_network_from_plans.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,309 copying nnunetv2/utilities/helpers.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,311 copying nnunetv2/utilities/find_class_by_name.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,312 copying nnunetv2/utilities/utils.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,314 copying nnunetv2/utilities/dataset_name_id_conversion.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,316 copying nnunetv2/utilities/file_path_utilities.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,318 copying nnunetv2/utilities/json_export.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,320 copying nnunetv2/utilities/__init__.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,321 copying nnunetv2/utilities/default_n_proc_DA.py -> build/lib/nnunetv2/utilities 2024-04-18T10:34:57,324 creating build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,325 copying nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,327 copying nnunetv2/dataset_conversion/Dataset223_AMOS2022postChallenge.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,329 copying nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,330 copying nnunetv2/dataset_conversion/Dataset027_ACDC.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,332 copying nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,334 copying nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,336 copying nnunetv2/dataset_conversion/generate_dataset_json.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,338 copying nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,340 copying nnunetv2/dataset_conversion/Dataset114_MNMs.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,342 copying nnunetv2/dataset_conversion/Dataset115_EMIDEC.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,343 copying nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,345 copying nnunetv2/dataset_conversion/__init__.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,346 copying nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,348 copying nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,350 copying nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,351 copying nnunetv2/dataset_conversion/Dataset220_KiTS2023.py -> build/lib/nnunetv2/dataset_conversion 2024-04-18T10:34:57,353 creating build/lib/nnunetv2/experiment_planning/experiment_planners 2024-04-18T10:34:57,354 copying nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2024-04-18T10:34:57,357 copying nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2024-04-18T10:34:57,359 copying nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2024-04-18T10:34:57,361 copying nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2024-04-18T10:34:57,363 creating build/lib/nnunetv2/experiment_planning/plans_for_pretraining 2024-04-18T10:34:57,364 copying nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining 2024-04-18T10:34:57,366 copying nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining 2024-04-18T10:34:57,368 creating build/lib/nnunetv2/experiment_planning/dataset_fingerprint 2024-04-18T10:34:57,369 copying nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint 2024-04-18T10:34:57,371 copying nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint 2024-04-18T10:34:57,373 creating build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-04-18T10:34:57,374 copying nnunetv2/experiment_planning/experiment_planners/residual_unets/residual_encoder_unet_planners.py -> build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-04-18T10:34:57,376 copying nnunetv2/experiment_planning/experiment_planners/residual_unets/__init__.py -> build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-04-18T10:34:57,378 creating build/lib/nnunetv2/tests/integration_tests 2024-04-18T10:34:57,379 copying nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/lib/nnunetv2/tests/integration_tests 2024-04-18T10:34:57,382 copying nnunetv2/tests/integration_tests/__init__.py -> build/lib/nnunetv2/tests/integration_tests 2024-04-18T10:34:57,383 copying nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/lib/nnunetv2/tests/integration_tests 2024-04-18T10:34:57,385 copying nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/lib/nnunetv2/tests/integration_tests 2024-04-18T10:34:57,387 creating build/lib/nnunetv2/training/dataloading 2024-04-18T10:34:57,388 copying nnunetv2/training/dataloading/data_loader_3d.py -> build/lib/nnunetv2/training/dataloading 2024-04-18T10:34:57,390 copying nnunetv2/training/dataloading/utils.py -> build/lib/nnunetv2/training/dataloading 2024-04-18T10:34:57,391 copying nnunetv2/training/dataloading/base_data_loader.py -> build/lib/nnunetv2/training/dataloading 2024-04-18T10:34:57,394 copying nnunetv2/training/dataloading/nnunet_dataset.py -> build/lib/nnunetv2/training/dataloading 2024-04-18T10:34:57,396 copying nnunetv2/training/dataloading/__init__.py -> build/lib/nnunetv2/training/dataloading 2024-04-18T10:34:57,397 copying nnunetv2/training/dataloading/data_loader_2d.py -> build/lib/nnunetv2/training/dataloading 2024-04-18T10:34:57,399 creating build/lib/nnunetv2/training/data_augmentation 2024-04-18T10:34:57,400 copying nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/lib/nnunetv2/training/data_augmentation 2024-04-18T10:34:57,402 copying nnunetv2/training/data_augmentation/__init__.py -> build/lib/nnunetv2/training/data_augmentation 2024-04-18T10:34:57,403 creating build/lib/nnunetv2/training/nnUNetTrainer 2024-04-18T10:34:57,404 copying nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/lib/nnunetv2/training/nnUNetTrainer 2024-04-18T10:34:57,408 copying nnunetv2/training/nnUNetTrainer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer 2024-04-18T10:34:57,409 creating build/lib/nnunetv2/training/lr_scheduler 2024-04-18T10:34:57,410 copying nnunetv2/training/lr_scheduler/polylr.py -> build/lib/nnunetv2/training/lr_scheduler 2024-04-18T10:34:57,412 copying nnunetv2/training/lr_scheduler/__init__.py -> build/lib/nnunetv2/training/lr_scheduler 2024-04-18T10:34:57,414 creating build/lib/nnunetv2/training/loss 2024-04-18T10:34:57,414 copying nnunetv2/training/loss/deep_supervision.py -> build/lib/nnunetv2/training/loss 2024-04-18T10:34:57,416 copying nnunetv2/training/loss/robust_ce_loss.py -> build/lib/nnunetv2/training/loss 2024-04-18T10:34:57,418 copying nnunetv2/training/loss/dice.py -> build/lib/nnunetv2/training/loss 2024-04-18T10:34:57,420 copying nnunetv2/training/loss/compound_losses.py -> build/lib/nnunetv2/training/loss 2024-04-18T10:34:57,422 copying nnunetv2/training/loss/__init__.py -> build/lib/nnunetv2/training/loss 2024-04-18T10:34:57,424 creating build/lib/nnunetv2/training/logging 2024-04-18T10:34:57,425 copying nnunetv2/training/logging/__init__.py -> build/lib/nnunetv2/training/logging 2024-04-18T10:34:57,426 copying nnunetv2/training/logging/nnunet_logger.py -> build/lib/nnunetv2/training/logging 2024-04-18T10:34:57,429 creating build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,430 copying nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,431 copying nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,433 copying nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,435 copying nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,436 copying nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,438 copying nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,440 copying nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,442 copying nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,444 creating build/lib/nnunetv2/training/nnUNetTrainer/variants 2024-04-18T10:34:57,445 copying nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants 2024-04-18T10:34:57,447 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-18T10:34:57,448 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-18T10:34:57,450 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-18T10:34:57,451 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-18T10:34:57,453 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-18T10:34:57,455 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-18T10:34:57,458 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-18T10:34:57,458 copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-18T10:34:57,460 copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-18T10:34:57,462 copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-18T10:34:57,464 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-04-18T10:34:57,464 copying nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-04-18T10:34:57,467 copying nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-04-18T10:34:57,469 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-18T10:34:57,470 copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-18T10:34:57,471 copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-18T10:34:57,473 copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-18T10:34:57,475 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-18T10:34:57,476 copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-18T10:34:57,478 copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-18T10:34:57,480 copying nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-18T10:34:57,481 copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-18T10:34:57,483 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-18T10:34:57,484 copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-18T10:34:57,486 copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-18T10:34:57,488 copying nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-18T10:34:57,490 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-18T10:34:57,491 copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-18T10:34:57,493 copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-18T10:34:57,494 copying nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-18T10:34:57,496 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-04-18T10:34:57,497 copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-04-18T10:34:57,499 copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-04-18T10:34:57,500 creating build/lib/nnunetv2/preprocessing/resampling 2024-04-18T10:34:57,501 copying nnunetv2/preprocessing/resampling/utils.py -> build/lib/nnunetv2/preprocessing/resampling 2024-04-18T10:34:57,503 copying nnunetv2/preprocessing/resampling/default_resampling.py -> build/lib/nnunetv2/preprocessing/resampling 2024-04-18T10:34:57,505 copying nnunetv2/preprocessing/resampling/__init__.py -> build/lib/nnunetv2/preprocessing/resampling 2024-04-18T10:34:57,507 creating build/lib/nnunetv2/preprocessing/normalization 2024-04-18T10:34:57,508 copying nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/lib/nnunetv2/preprocessing/normalization 2024-04-18T10:34:57,510 copying nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/lib/nnunetv2/preprocessing/normalization 2024-04-18T10:34:57,512 copying nnunetv2/preprocessing/normalization/__init__.py -> build/lib/nnunetv2/preprocessing/normalization 2024-04-18T10:34:57,514 creating build/lib/nnunetv2/preprocessing/preprocessors 2024-04-18T10:34:57,515 copying nnunetv2/preprocessing/preprocessors/__init__.py -> build/lib/nnunetv2/preprocessing/preprocessors 2024-04-18T10:34:57,516 copying nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/lib/nnunetv2/preprocessing/preprocessors 2024-04-18T10:34:57,519 creating build/lib/nnunetv2/preprocessing/cropping 2024-04-18T10:34:57,520 copying nnunetv2/preprocessing/cropping/__init__.py -> build/lib/nnunetv2/preprocessing/cropping 2024-04-18T10:34:57,522 copying nnunetv2/preprocessing/cropping/cropping.py -> build/lib/nnunetv2/preprocessing/cropping 2024-04-18T10:34:57,524 creating build/lib/nnunetv2/batch_running/benchmarking 2024-04-18T10:34:57,525 copying nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/lib/nnunetv2/batch_running/benchmarking 2024-04-18T10:34:57,527 copying nnunetv2/batch_running/benchmarking/__init__.py -> build/lib/nnunetv2/batch_running/benchmarking 2024-04-18T10:34:57,528 copying nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/lib/nnunetv2/batch_running/benchmarking 2024-04-18T10:34:57,531 creating build/lib/nnunetv2/batch_running/release_trainings 2024-04-18T10:34:57,532 copying nnunetv2/batch_running/release_trainings/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings 2024-04-18T10:34:57,534 creating build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-18T10:34:57,535 copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-18T10:34:57,537 copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-18T10:34:57,539 copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-18T10:34:57,541 creating build/lib/nnunetv2/utilities/plans_handling 2024-04-18T10:34:57,542 copying nnunetv2/utilities/plans_handling/plans_handler.py -> build/lib/nnunetv2/utilities/plans_handling 2024-04-18T10:34:57,544 copying nnunetv2/utilities/plans_handling/__init__.py -> build/lib/nnunetv2/utilities/plans_handling 2024-04-18T10:34:57,546 creating build/lib/nnunetv2/utilities/label_handling 2024-04-18T10:34:57,547 copying nnunetv2/utilities/label_handling/label_handling.py -> build/lib/nnunetv2/utilities/label_handling 2024-04-18T10:34:57,549 copying nnunetv2/utilities/label_handling/__init__.py -> build/lib/nnunetv2/utilities/label_handling 2024-04-18T10:34:57,551 creating build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-18T10:34:57,552 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-18T10:34:57,554 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-18T10:34:57,555 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-18T10:34:57,557 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-18T10:34:57,558 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-18T10:34:57,560 running egg_info 2024-04-18T10:34:57,563 writing nnunetv2.egg-info/PKG-INFO 2024-04-18T10:34:57,568 writing dependency_links to nnunetv2.egg-info/dependency_links.txt 2024-04-18T10:34:57,571 writing entry points to nnunetv2.egg-info/entry_points.txt 2024-04-18T10:34:57,573 writing requirements to nnunetv2.egg-info/requires.txt 2024-04-18T10:34:57,574 writing top-level names to nnunetv2.egg-info/top_level.txt 2024-04-18T10:34:57,614 reading manifest file 'nnunetv2.egg-info/SOURCES.txt' 2024-04-18T10:34:57,619 adding license file 'LICENSE' 2024-04-18T10:34:57,628 writing manifest file 'nnunetv2.egg-info/SOURCES.txt' 2024-04-18T10:34:57,671 installing to build/bdist.linux-armv7l/wheel 2024-04-18T10:34:57,672 running install 2024-04-18T10:34:57,696 running install_lib 2024-04-18T10:34:57,700 creating build/bdist.linux-armv7l 2024-04-18T10:34:57,700 creating build/bdist.linux-armv7l/wheel 2024-04-18T10:34:57,702 creating build/bdist.linux-armv7l/wheel/nnunetv2 2024-04-18T10:34:57,703 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-04-18T10:34:57,704 copying build/lib/nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-04-18T10:34:57,707 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-04-18T10:34:57,708 copying build/lib/nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-04-18T10:34:57,711 copying build/lib/nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-04-18T10:34:57,714 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-04-18T10:34:57,715 copying build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets/residual_encoder_unet_planners.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-04-18T10:34:57,718 copying build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-04-18T10:34:57,720 copying build/lib/nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-04-18T10:34:57,722 copying build/lib/nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-04-18T10:34:57,723 copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-04-18T10:34:57,726 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining 2024-04-18T10:34:57,727 copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining 2024-04-18T10:34:57,729 copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining 2024-04-18T10:34:57,731 copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-04-18T10:34:57,733 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint 2024-04-18T10:34:57,734 copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint 2024-04-18T10:34:57,737 copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint 2024-04-18T10:34:57,738 copying build/lib/nnunetv2/experiment_planning/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-04-18T10:34:57,740 creating build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-04-18T10:34:57,741 copying build/lib/nnunetv2/model_sharing/model_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-04-18T10:34:57,744 copying build/lib/nnunetv2/model_sharing/model_download.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-04-18T10:34:57,745 copying build/lib/nnunetv2/model_sharing/entry_points.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-04-18T10:34:57,747 copying build/lib/nnunetv2/model_sharing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-04-18T10:34:57,749 copying build/lib/nnunetv2/model_sharing/model_import.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-04-18T10:34:57,751 creating build/bdist.linux-armv7l/wheel/nnunetv2/ensembling 2024-04-18T10:34:57,752 copying build/lib/nnunetv2/ensembling/ensemble.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling 2024-04-18T10:34:57,754 copying build/lib/nnunetv2/ensembling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling 2024-04-18T10:34:57,756 copying build/lib/nnunetv2/paths.py -> build/bdist.linux-armv7l/wheel/nnunetv2 2024-04-18T10:34:57,763 creating build/bdist.linux-armv7l/wheel/nnunetv2/run 2024-04-18T10:34:57,764 copying build/lib/nnunetv2/run/load_pretrained_weights.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run 2024-04-18T10:34:57,766 copying build/lib/nnunetv2/run/run_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run 2024-04-18T10:34:57,768 copying build/lib/nnunetv2/run/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run 2024-04-18T10:34:57,770 creating build/bdist.linux-armv7l/wheel/nnunetv2/tests 2024-04-18T10:34:57,772 creating build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-04-18T10:34:57,773 copying build/lib/nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-04-18T10:34:57,775 copying build/lib/nnunetv2/tests/integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-04-18T10:34:57,776 copying build/lib/nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-04-18T10:34:57,778 copying build/lib/nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-04-18T10:34:57,780 copying build/lib/nnunetv2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests 2024-04-18T10:34:57,782 creating build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-18T10:34:57,782 copying build/lib/nnunetv2/imageio/natural_image_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-18T10:34:57,784 copying build/lib/nnunetv2/imageio/reader_writer_registry.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-18T10:34:57,786 copying build/lib/nnunetv2/imageio/simpleitk_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-18T10:34:57,788 copying build/lib/nnunetv2/imageio/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-18T10:34:57,790 copying build/lib/nnunetv2/imageio/base_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-18T10:34:57,792 copying build/lib/nnunetv2/imageio/nibabel_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-18T10:34:57,794 copying build/lib/nnunetv2/imageio/tif_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-18T10:34:57,797 creating build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-04-18T10:34:57,798 copying build/lib/nnunetv2/evaluation/find_best_configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-04-18T10:34:57,800 copying build/lib/nnunetv2/evaluation/evaluate_predictions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-04-18T10:34:57,803 copying build/lib/nnunetv2/evaluation/accumulate_cv_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-04-18T10:34:57,805 copying build/lib/nnunetv2/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-04-18T10:34:57,806 creating build/bdist.linux-armv7l/wheel/nnunetv2/training 2024-04-18T10:34:57,808 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-18T10:34:57,809 copying build/lib/nnunetv2/training/dataloading/data_loader_3d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-18T10:34:57,811 copying build/lib/nnunetv2/training/dataloading/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-18T10:34:57,813 copying build/lib/nnunetv2/training/dataloading/base_data_loader.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-18T10:34:57,815 copying build/lib/nnunetv2/training/dataloading/nnunet_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-18T10:34:57,817 copying build/lib/nnunetv2/training/dataloading/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-18T10:34:57,819 copying build/lib/nnunetv2/training/dataloading/data_loader_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-18T10:34:57,821 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation 2024-04-18T10:34:57,822 copying build/lib/nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation 2024-04-18T10:34:57,824 copying build/lib/nnunetv2/training/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation 2024-04-18T10:34:57,826 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,827 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,829 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,831 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,833 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,834 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,836 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,838 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,840 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-18T10:34:57,842 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer 2024-04-18T10:34:57,843 copying build/lib/nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer 2024-04-18T10:34:57,847 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants 2024-04-18T10:34:57,849 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-18T10:34:57,850 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-18T10:34:57,851 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-18T10:34:57,853 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-18T10:34:57,856 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-18T10:34:57,858 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-18T10:34:57,861 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-18T10:34:57,862 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-18T10:34:57,863 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-18T10:34:57,865 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-18T10:34:57,867 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-04-18T10:34:57,868 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-04-18T10:34:57,871 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-04-18T10:34:57,873 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-18T10:34:57,874 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-18T10:34:57,875 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-18T10:34:57,877 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-18T10:34:57,879 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-18T10:34:57,880 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-18T10:34:57,882 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-18T10:34:57,884 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-18T10:34:57,885 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-18T10:34:57,887 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-18T10:34:57,888 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-18T10:34:57,890 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-18T10:34:57,892 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-18T10:34:57,894 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants 2024-04-18T10:34:57,896 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-18T10:34:57,897 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-18T10:34:57,899 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-18T10:34:57,901 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-18T10:34:57,903 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-04-18T10:34:57,904 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-04-18T10:34:57,906 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-04-18T10:34:57,908 copying build/lib/nnunetv2/training/nnUNetTrainer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer 2024-04-18T10:34:57,909 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler 2024-04-18T10:34:57,910 copying build/lib/nnunetv2/training/lr_scheduler/polylr.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler 2024-04-18T10:34:57,912 copying build/lib/nnunetv2/training/lr_scheduler/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler 2024-04-18T10:34:57,914 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-04-18T10:34:57,914 copying build/lib/nnunetv2/training/loss/deep_supervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-04-18T10:34:57,916 copying build/lib/nnunetv2/training/loss/robust_ce_loss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-04-18T10:34:57,918 copying build/lib/nnunetv2/training/loss/dice.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-04-18T10:34:57,920 copying build/lib/nnunetv2/training/loss/compound_losses.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-04-18T10:34:57,922 copying build/lib/nnunetv2/training/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-04-18T10:34:57,923 copying build/lib/nnunetv2/training/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training 2024-04-18T10:34:57,925 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/logging 2024-04-18T10:34:57,926 copying build/lib/nnunetv2/training/logging/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging 2024-04-18T10:34:57,927 copying build/lib/nnunetv2/training/logging/nnunet_logger.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging 2024-04-18T10:34:57,930 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing 2024-04-18T10:34:57,931 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-04-18T10:34:57,932 copying build/lib/nnunetv2/preprocessing/resampling/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-04-18T10:34:57,934 copying build/lib/nnunetv2/preprocessing/resampling/default_resampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-04-18T10:34:57,936 copying build/lib/nnunetv2/preprocessing/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-04-18T10:34:57,938 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2024-04-18T10:34:57,939 copying build/lib/nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2024-04-18T10:34:57,941 copying build/lib/nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2024-04-18T10:34:57,943 copying build/lib/nnunetv2/preprocessing/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2024-04-18T10:34:57,945 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors 2024-04-18T10:34:57,946 copying build/lib/nnunetv2/preprocessing/preprocessors/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors 2024-04-18T10:34:57,947 copying build/lib/nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors 2024-04-18T10:34:57,950 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping 2024-04-18T10:34:57,951 copying build/lib/nnunetv2/preprocessing/cropping/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping 2024-04-18T10:34:57,953 copying build/lib/nnunetv2/preprocessing/cropping/cropping.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping 2024-04-18T10:34:57,955 copying build/lib/nnunetv2/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing 2024-04-18T10:34:57,957 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-04-18T10:34:57,958 copying build/lib/nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-04-18T10:34:57,960 copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-04-18T10:34:57,962 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2024-04-18T10:34:57,963 copying build/lib/nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2024-04-18T10:34:57,965 copying build/lib/nnunetv2/batch_running/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2024-04-18T10:34:57,966 copying build/lib/nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2024-04-18T10:34:57,968 copying build/lib/nnunetv2/batch_running/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-04-18T10:34:57,970 copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-04-18T10:34:57,972 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings 2024-04-18T10:34:57,973 copying build/lib/nnunetv2/batch_running/release_trainings/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings 2024-04-18T10:34:57,974 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-18T10:34:57,975 copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-18T10:34:57,977 copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-18T10:34:57,980 copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-18T10:34:57,981 copying build/lib/nnunetv2/configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2 2024-04-18T10:34:57,983 creating build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing 2024-04-18T10:34:57,984 copying build/lib/nnunetv2/postprocessing/remove_connected_components.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing 2024-04-18T10:34:57,987 copying build/lib/nnunetv2/postprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing 2024-04-18T10:34:57,989 copying build/lib/nnunetv2/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2 2024-04-18T10:34:57,991 creating build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-18T10:34:57,992 copying build/lib/nnunetv2/inference/predict_from_raw_data.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-18T10:34:57,996 copying build/lib/nnunetv2/inference/examples.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-18T10:34:57,998 copying build/lib/nnunetv2/inference/sliding_window_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-18T10:34:58,000 copying build/lib/nnunetv2/inference/export_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-18T10:34:58,002 copying build/lib/nnunetv2/inference/data_iterators.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-18T10:34:58,004 copying build/lib/nnunetv2/inference/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-18T10:34:58,006 creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,007 copying build/lib/nnunetv2/utilities/ddp_allgather.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,009 copying build/lib/nnunetv2/utilities/overlay_plots.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,011 copying build/lib/nnunetv2/utilities/collate_outputs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,013 copying build/lib/nnunetv2/utilities/network_initialization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,015 creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling 2024-04-18T10:34:58,016 copying build/lib/nnunetv2/utilities/plans_handling/plans_handler.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling 2024-04-18T10:34:58,018 copying build/lib/nnunetv2/utilities/plans_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling 2024-04-18T10:34:58,020 copying build/lib/nnunetv2/utilities/crossval_split.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,021 copying build/lib/nnunetv2/utilities/get_network_from_plans.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,023 copying build/lib/nnunetv2/utilities/helpers.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,025 copying build/lib/nnunetv2/utilities/find_class_by_name.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,026 copying build/lib/nnunetv2/utilities/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,028 copying build/lib/nnunetv2/utilities/dataset_name_id_conversion.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,030 copying build/lib/nnunetv2/utilities/file_path_utilities.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,032 copying build/lib/nnunetv2/utilities/json_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,034 copying build/lib/nnunetv2/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,036 copying build/lib/nnunetv2/utilities/default_n_proc_DA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-18T10:34:58,038 creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling 2024-04-18T10:34:58,039 copying build/lib/nnunetv2/utilities/label_handling/label_handling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling 2024-04-18T10:34:58,041 copying build/lib/nnunetv2/utilities/label_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling 2024-04-18T10:34:58,043 creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,044 copying build/lib/nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,047 creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-18T10:34:58,048 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-18T10:34:58,050 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-18T10:34:58,051 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-18T10:34:58,053 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-18T10:34:58,055 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-18T10:34:58,057 copying build/lib/nnunetv2/dataset_conversion/Dataset223_AMOS2022postChallenge.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,059 copying build/lib/nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,061 copying build/lib/nnunetv2/dataset_conversion/Dataset027_ACDC.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,063 copying build/lib/nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,064 copying build/lib/nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,066 copying build/lib/nnunetv2/dataset_conversion/generate_dataset_json.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,068 copying build/lib/nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,070 copying build/lib/nnunetv2/dataset_conversion/Dataset114_MNMs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,072 copying build/lib/nnunetv2/dataset_conversion/Dataset115_EMIDEC.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,074 copying build/lib/nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,076 copying build/lib/nnunetv2/dataset_conversion/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,077 copying build/lib/nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,079 copying build/lib/nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,081 copying build/lib/nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,083 copying build/lib/nnunetv2/dataset_conversion/Dataset220_KiTS2023.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-18T10:34:58,085 running install_egg_info 2024-04-18T10:34:58,088 Copying nnunetv2.egg-info to build/bdist.linux-armv7l/wheel/nnunetv2-2.4-py3.11.egg-info 2024-04-18T10:34:58,102 running install_scripts 2024-04-18T10:34:58,124 creating build/bdist.linux-armv7l/wheel/nnunetv2-2.4.dist-info/WHEEL 2024-04-18T10:34:58,126 creating '/tmp/pip-wheel-wqlcr2yo/.tmp-47993exr/nnunetv2-2.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-18T10:34:58,128 adding 'nnunetv2/__init__.py' 2024-04-18T10:34:58,130 adding 'nnunetv2/configuration.py' 2024-04-18T10:34:58,131 adding 'nnunetv2/paths.py' 2024-04-18T10:34:58,133 adding 'nnunetv2/batch_running/__init__.py' 2024-04-18T10:34:58,134 adding 'nnunetv2/batch_running/collect_results_custom_Decathlon.py' 2024-04-18T10:34:58,135 adding 'nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py' 2024-04-18T10:34:58,137 adding 'nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py' 2024-04-18T10:34:58,139 adding 'nnunetv2/batch_running/benchmarking/__init__.py' 2024-04-18T10:34:58,140 adding 'nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py' 2024-04-18T10:34:58,141 adding 'nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py' 2024-04-18T10:34:58,143 adding 'nnunetv2/batch_running/release_trainings/__init__.py' 2024-04-18T10:34:58,145 adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py' 2024-04-18T10:34:58,146 adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py' 2024-04-18T10:34:58,147 adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py' 2024-04-18T10:34:58,150 adding 'nnunetv2/dataset_conversion/Dataset027_ACDC.py' 2024-04-18T10:34:58,151 adding 'nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py' 2024-04-18T10:34:58,153 adding 'nnunetv2/dataset_conversion/Dataset114_MNMs.py' 2024-04-18T10:34:58,154 adding 'nnunetv2/dataset_conversion/Dataset115_EMIDEC.py' 2024-04-18T10:34:58,155 adding 'nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py' 2024-04-18T10:34:58,157 adding 'nnunetv2/dataset_conversion/Dataset137_BraTS21.py' 2024-04-18T10:34:58,158 adding 'nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py' 2024-04-18T10:34:58,159 adding 'nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py' 2024-04-18T10:34:58,160 adding 'nnunetv2/dataset_conversion/Dataset220_KiTS2023.py' 2024-04-18T10:34:58,162 adding 'nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py' 2024-04-18T10:34:58,163 adding 'nnunetv2/dataset_conversion/Dataset223_AMOS2022postChallenge.py' 2024-04-18T10:34:58,164 adding 'nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py' 2024-04-18T10:34:58,165 adding 'nnunetv2/dataset_conversion/__init__.py' 2024-04-18T10:34:58,167 adding 'nnunetv2/dataset_conversion/convert_MSD_dataset.py' 2024-04-18T10:34:58,168 adding 'nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py' 2024-04-18T10:34:58,169 adding 'nnunetv2/dataset_conversion/generate_dataset_json.py' 2024-04-18T10:34:58,171 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py' 2024-04-18T10:34:58,173 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py' 2024-04-18T10:34:58,174 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py' 2024-04-18T10:34:58,175 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py' 2024-04-18T10:34:58,176 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py' 2024-04-18T10:34:58,178 adding 'nnunetv2/ensembling/__init__.py' 2024-04-18T10:34:58,180 adding 'nnunetv2/ensembling/ensemble.py' 2024-04-18T10:34:58,181 adding 'nnunetv2/evaluation/__init__.py' 2024-04-18T10:34:58,183 adding 'nnunetv2/evaluation/accumulate_cv_results.py' 2024-04-18T10:34:58,184 adding 'nnunetv2/evaluation/evaluate_predictions.py' 2024-04-18T10:34:58,187 adding 'nnunetv2/evaluation/find_best_configuration.py' 2024-04-18T10:34:58,189 adding 'nnunetv2/experiment_planning/__init__.py' 2024-04-18T10:34:58,190 adding 'nnunetv2/experiment_planning/plan_and_preprocess_api.py' 2024-04-18T10:34:58,192 adding 'nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py' 2024-04-18T10:34:58,194 adding 'nnunetv2/experiment_planning/verify_dataset_integrity.py' 2024-04-18T10:34:58,196 adding 'nnunetv2/experiment_planning/dataset_fingerprint/__init__.py' 2024-04-18T10:34:58,198 adding 'nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py' 2024-04-18T10:34:58,200 adding 'nnunetv2/experiment_planning/experiment_planners/__init__.py' 2024-04-18T10:34:58,204 adding 'nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py' 2024-04-18T10:34:58,205 adding 'nnunetv2/experiment_planning/experiment_planners/network_topology.py' 2024-04-18T10:34:58,207 adding 'nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py' 2024-04-18T10:34:58,209 adding 'nnunetv2/experiment_planning/experiment_planners/residual_unets/__init__.py' 2024-04-18T10:34:58,211 adding 'nnunetv2/experiment_planning/experiment_planners/residual_unets/residual_encoder_unet_planners.py' 2024-04-18T10:34:58,213 adding 'nnunetv2/experiment_planning/plans_for_pretraining/__init__.py' 2024-04-18T10:34:58,214 adding 'nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py' 2024-04-18T10:34:58,216 adding 'nnunetv2/imageio/__init__.py' 2024-04-18T10:34:58,217 adding 'nnunetv2/imageio/base_reader_writer.py' 2024-04-18T10:34:58,219 adding 'nnunetv2/imageio/natural_image_reader_writer.py' 2024-04-18T10:34:58,220 adding 'nnunetv2/imageio/nibabel_reader_writer.py' 2024-04-18T10:34:58,221 adding 'nnunetv2/imageio/reader_writer_registry.py' 2024-04-18T10:34:58,223 adding 'nnunetv2/imageio/simpleitk_reader_writer.py' 2024-04-18T10:34:58,224 adding 'nnunetv2/imageio/tif_reader_writer.py' 2024-04-18T10:34:58,226 adding 'nnunetv2/inference/__init__.py' 2024-04-18T10:34:58,228 adding 'nnunetv2/inference/data_iterators.py' 2024-04-18T10:34:58,229 adding 'nnunetv2/inference/examples.py' 2024-04-18T10:34:58,230 adding 'nnunetv2/inference/export_prediction.py' 2024-04-18T10:34:58,236 adding 'nnunetv2/inference/predict_from_raw_data.py' 2024-04-18T10:34:58,237 adding 'nnunetv2/inference/sliding_window_prediction.py' 2024-04-18T10:34:58,239 adding 'nnunetv2/model_sharing/__init__.py' 2024-04-18T10:34:58,240 adding 'nnunetv2/model_sharing/entry_points.py' 2024-04-18T10:34:58,241 adding 'nnunetv2/model_sharing/model_download.py' 2024-04-18T10:34:58,243 adding 'nnunetv2/model_sharing/model_export.py' 2024-04-18T10:34:58,244 adding 'nnunetv2/model_sharing/model_import.py' 2024-04-18T10:34:58,246 adding 'nnunetv2/postprocessing/__init__.py' 2024-04-18T10:34:58,248 adding 'nnunetv2/postprocessing/remove_connected_components.py' 2024-04-18T10:34:58,250 adding 'nnunetv2/preprocessing/__init__.py' 2024-04-18T10:34:58,251 adding 'nnunetv2/preprocessing/cropping/__init__.py' 2024-04-18T10:34:58,252 adding 'nnunetv2/preprocessing/cropping/cropping.py' 2024-04-18T10:34:58,254 adding 'nnunetv2/preprocessing/normalization/__init__.py' 2024-04-18T10:34:58,255 adding 'nnunetv2/preprocessing/normalization/default_normalization_schemes.py' 2024-04-18T10:34:58,257 adding 'nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py' 2024-04-18T10:34:58,258 adding 'nnunetv2/preprocessing/preprocessors/__init__.py' 2024-04-18T10:34:58,261 adding 'nnunetv2/preprocessing/preprocessors/default_preprocessor.py' 2024-04-18T10:34:58,262 adding 'nnunetv2/preprocessing/resampling/__init__.py' 2024-04-18T10:34:58,264 adding 'nnunetv2/preprocessing/resampling/default_resampling.py' 2024-04-18T10:34:58,265 adding 'nnunetv2/preprocessing/resampling/utils.py' 2024-04-18T10:34:58,267 adding 'nnunetv2/run/__init__.py' 2024-04-18T10:34:58,268 adding 'nnunetv2/run/load_pretrained_weights.py' 2024-04-18T10:34:58,270 adding 'nnunetv2/run/run_training.py' 2024-04-18T10:34:58,272 adding 'nnunetv2/tests/__init__.py' 2024-04-18T10:34:58,273 adding 'nnunetv2/tests/integration_tests/__init__.py' 2024-04-18T10:34:58,275 adding 'nnunetv2/tests/integration_tests/add_lowres_and_cascade.py' 2024-04-18T10:34:58,276 adding 'nnunetv2/tests/integration_tests/cleanup_integration_test.py' 2024-04-18T10:34:58,277 adding 'nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py' 2024-04-18T10:34:58,279 adding 'nnunetv2/training/__init__.py' 2024-04-18T10:34:58,281 adding 'nnunetv2/training/data_augmentation/__init__.py' 2024-04-18T10:34:58,282 adding 'nnunetv2/training/data_augmentation/compute_initial_patch_size.py' 2024-04-18T10:34:58,283 adding 'nnunetv2/training/data_augmentation/custom_transforms/__init__.py' 2024-04-18T10:34:58,285 adding 'nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py' 2024-04-18T10:34:58,286 adding 'nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py' 2024-04-18T10:34:58,288 adding 'nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py' 2024-04-18T10:34:58,289 adding 'nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py' 2024-04-18T10:34:58,290 adding 'nnunetv2/training/data_augmentation/custom_transforms/masking.py' 2024-04-18T10:34:58,291 adding 'nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py' 2024-04-18T10:34:58,293 adding 'nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py' 2024-04-18T10:34:58,294 adding 'nnunetv2/training/dataloading/__init__.py' 2024-04-18T10:34:58,296 adding 'nnunetv2/training/dataloading/base_data_loader.py' 2024-04-18T10:34:58,297 adding 'nnunetv2/training/dataloading/data_loader_2d.py' 2024-04-18T10:34:58,298 adding 'nnunetv2/training/dataloading/data_loader_3d.py' 2024-04-18T10:34:58,300 adding 'nnunetv2/training/dataloading/nnunet_dataset.py' 2024-04-18T10:34:58,301 adding 'nnunetv2/training/dataloading/utils.py' 2024-04-18T10:34:58,302 adding 'nnunetv2/training/logging/__init__.py' 2024-04-18T10:34:58,304 adding 'nnunetv2/training/logging/nnunet_logger.py' 2024-04-18T10:34:58,305 adding 'nnunetv2/training/loss/__init__.py' 2024-04-18T10:34:58,307 adding 'nnunetv2/training/loss/compound_losses.py' 2024-04-18T10:34:58,308 adding 'nnunetv2/training/loss/deep_supervision.py' 2024-04-18T10:34:58,310 adding 'nnunetv2/training/loss/dice.py' 2024-04-18T10:34:58,311 adding 'nnunetv2/training/loss/robust_ce_loss.py' 2024-04-18T10:34:58,312 adding 'nnunetv2/training/lr_scheduler/__init__.py' 2024-04-18T10:34:58,313 adding 'nnunetv2/training/lr_scheduler/polylr.py' 2024-04-18T10:34:58,315 adding 'nnunetv2/training/nnUNetTrainer/__init__.py' 2024-04-18T10:34:58,322 adding 'nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py' 2024-04-18T10:34:58,324 adding 'nnunetv2/training/nnUNetTrainer/variants/__init__.py' 2024-04-18T10:34:58,326 adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py' 2024-04-18T10:34:58,327 adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py' 2024-04-18T10:34:58,329 adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py' 2024-04-18T10:34:58,330 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py' 2024-04-18T10:34:58,333 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py' 2024-04-18T10:34:58,334 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py' 2024-04-18T10:34:58,335 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py' 2024-04-18T10:34:58,336 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py' 2024-04-18T10:34:58,338 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py' 2024-04-18T10:34:58,339 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py' 2024-04-18T10:34:58,341 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py' 2024-04-18T10:34:58,342 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py' 2024-04-18T10:34:58,343 adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py' 2024-04-18T10:34:58,345 adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py' 2024-04-18T10:34:58,346 adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py' 2024-04-18T10:34:58,347 adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py' 2024-04-18T10:34:58,349 adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py' 2024-04-18T10:34:58,350 adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py' 2024-04-18T10:34:58,352 adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py' 2024-04-18T10:34:58,353 adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py' 2024-04-18T10:34:58,354 adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py' 2024-04-18T10:34:58,356 adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py' 2024-04-18T10:34:58,357 adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py' 2024-04-18T10:34:58,359 adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py' 2024-04-18T10:34:58,360 adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py' 2024-04-18T10:34:58,362 adding 'nnunetv2/utilities/__init__.py' 2024-04-18T10:34:58,363 adding 'nnunetv2/utilities/collate_outputs.py' 2024-04-18T10:34:58,364 adding 'nnunetv2/utilities/crossval_split.py' 2024-04-18T10:34:58,365 adding 'nnunetv2/utilities/dataset_name_id_conversion.py' 2024-04-18T10:34:58,366 adding 'nnunetv2/utilities/ddp_allgather.py' 2024-04-18T10:34:58,367 adding 'nnunetv2/utilities/default_n_proc_DA.py' 2024-04-18T10:34:58,369 adding 'nnunetv2/utilities/file_path_utilities.py' 2024-04-18T10:34:58,370 adding 'nnunetv2/utilities/find_class_by_name.py' 2024-04-18T10:34:58,371 adding 'nnunetv2/utilities/get_network_from_plans.py' 2024-04-18T10:34:58,372 adding 'nnunetv2/utilities/helpers.py' 2024-04-18T10:34:58,374 adding 'nnunetv2/utilities/json_export.py' 2024-04-18T10:34:58,375 adding 'nnunetv2/utilities/network_initialization.py' 2024-04-18T10:34:58,377 adding 'nnunetv2/utilities/overlay_plots.py' 2024-04-18T10:34:58,378 adding 'nnunetv2/utilities/utils.py' 2024-04-18T10:34:58,380 adding 'nnunetv2/utilities/label_handling/__init__.py' 2024-04-18T10:34:58,382 adding 'nnunetv2/utilities/label_handling/label_handling.py' 2024-04-18T10:34:58,383 adding 'nnunetv2/utilities/plans_handling/__init__.py' 2024-04-18T10:34:58,385 adding 'nnunetv2/utilities/plans_handling/plans_handler.py' 2024-04-18T10:34:58,389 adding 'nnunetv2-2.4.dist-info/LICENSE' 2024-04-18T10:34:58,392 adding 'nnunetv2-2.4.dist-info/METADATA' 2024-04-18T10:34:58,393 adding 'nnunetv2-2.4.dist-info/WHEEL' 2024-04-18T10:34:58,394 adding 'nnunetv2-2.4.dist-info/entry_points.txt' 2024-04-18T10:34:58,395 adding 'nnunetv2-2.4.dist-info/top_level.txt' 2024-04-18T10:34:58,399 adding 'nnunetv2-2.4.dist-info/RECORD' 2024-04-18T10:34:58,404 removing build/bdist.linux-armv7l/wheel 2024-04-18T10:34:58,576 Building wheel for nnunetv2 (pyproject.toml): finished with status 'done' 2024-04-18T10:34:58,587 Created wheel for nnunetv2: filename=nnunetv2-2.4-py3-none-any.whl size=248776 sha256=ed3fa482926c65d5a852e31ad670a81f9f0298e88277533ed475de7552583f5c 2024-04-18T10:34:58,588 Stored in directory: /tmp/pip-ephem-wheel-cache-1c8a7nar/wheels/8b/14/9d/5d6bd5096ae133299081cb7f795dc70e150faa37f037175156 2024-04-18T10:34:58,612 Successfully built nnunetv2 2024-04-18T10:34:58,623 Removed build tracker: '/tmp/pip-build-tracker-vgzl15q0'