2024-04-18T13:28:56,886 Created temporary directory: /tmp/pip-build-tracker-i0mvzbr5 2024-04-18T13:28:56,887 Initialized build tracking at /tmp/pip-build-tracker-i0mvzbr5 2024-04-18T13:28:56,888 Created build tracker: /tmp/pip-build-tracker-i0mvzbr5 2024-04-18T13:28:56,888 Entered build tracker: /tmp/pip-build-tracker-i0mvzbr5 2024-04-18T13:28:56,889 Created temporary directory: /tmp/pip-wheel-86k3teh5 2024-04-18T13:28:56,893 Created temporary directory: /tmp/pip-ephem-wheel-cache-i0juvav0 2024-04-18T13:28:56,914 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-18T13:28:56,918 2 location(s) to search for versions of atlas-densities: 2024-04-18T13:28:56,918 * https://pypi.org/simple/atlas-densities/ 2024-04-18T13:28:56,918 * https://www.piwheels.org/simple/atlas-densities/ 2024-04-18T13:28:56,918 Fetching project page and analyzing links: https://pypi.org/simple/atlas-densities/ 2024-04-18T13:28:56,919 Getting page https://pypi.org/simple/atlas-densities/ 2024-04-18T13:28:56,921 Found index url https://pypi.org/simple/ 2024-04-18T13:28:57,136 Fetched page https://pypi.org/simple/atlas-densities/ as application/vnd.pypi.simple.v1+json 2024-04-18T13:28:57,140 Found link https://files.pythonhosted.org/packages/75/a0/31e863dae4118b005ede7f6d9098a6910b9864be8a7912235629124fd1fe/atlas-densities-0.1.1.dev1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1.dev1 2024-04-18T13:28:57,141 Found link https://files.pythonhosted.org/packages/de/06/e8be8865b4bd500f567d873b884c95bc950e82d6b629daf4d2b51feee07f/atlas-densities-0.1.1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1 2024-04-18T13:28:57,142 Found link https://files.pythonhosted.org/packages/1c/7f/424e4e2a31de90b29ad4b08c106a94110c84fd3472800a26707cb6793cda/atlas-densities-0.1.2.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.2 2024-04-18T13:28:57,142 Found link https://files.pythonhosted.org/packages/d4/ff/487cd59cb1c04b581dfba1c835112a7d148c70f90af88e968e5013cfd229/atlas-densities-0.1.3.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.3 2024-04-18T13:28:57,144 Found link https://files.pythonhosted.org/packages/86/f5/7c7feea0c4c3d9bed1be86bed2d079ec3d076053276e24de09639bf6c4dd/atlas-densities-0.1.4.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.4 2024-04-18T13:28:57,145 Found link https://files.pythonhosted.org/packages/2c/ed/41e6c8f2ff9247f7c5b77a43c28727bf4c9a70bf1e7d9b6d2683e02be24e/atlas-densities-0.1.5.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.5 2024-04-18T13:28:57,146 Found link https://files.pythonhosted.org/packages/21/c8/9e8d339c85e1dc6c8aa7150f71176e1c86465678e142550fc02ff9298e9b/atlas-densities-0.2.0.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.0 2024-04-18T13:28:57,147 Found link https://files.pythonhosted.org/packages/81/59/e8354e4210eca90f39bf76f7f85aa7bb627fe4fe13eaacd772f1069d7f9e/atlas-densities-0.2.1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.1 2024-04-18T13:28:57,148 Found link https://files.pythonhosted.org/packages/36/b2/076a51f33be3c6886d190364797e6a5abb670a031788ead6bdd23a64f4f0/atlas-densities-0.2.2.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.2 2024-04-18T13:28:57,149 Found link https://files.pythonhosted.org/packages/ab/8a/6fe71c5390bea9c0986738ac7216b6a7ea2719e3e68b2314dad3abd44f9b/atlas-densities-0.2.3.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.3 2024-04-18T13:28:57,150 Found link https://files.pythonhosted.org/packages/5b/b3/47076a1bc880f3dcfa3c42e0f1035d309317cb005e1ac829946a60b320e2/atlas-densities-0.2.4.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.4 2024-04-18T13:28:57,150 Fetching project page and analyzing links: https://www.piwheels.org/simple/atlas-densities/ 2024-04-18T13:28:57,151 Getting page https://www.piwheels.org/simple/atlas-densities/ 2024-04-18T13:28:57,153 Found index url https://www.piwheels.org/simple/ 2024-04-18T13:28:57,338 Fetched page https://www.piwheels.org/simple/atlas-densities/ as text/html 2024-04-18T13:28:57,342 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.2.3-py3-none-any.whl#sha256=12c86c3b2dd7f0853e20bd64def407cf9e52a465208037f252dd544f2de8e33b (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-04-18T13:28:57,343 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.2.2-py3-none-any.whl#sha256=6d563eb822c5ce0bf359464a96b5806b1d5221bdc69cc30d19d0e685368536ec (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-04-18T13:28:57,343 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.2.1-py3-none-any.whl#sha256=7b2fb4c8ebfb6deda2a12d883dbdfeb529aa0b2bfbc4034d0808edd6a289bcee (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-04-18T13:28:57,344 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.2.0-py3-none-any.whl#sha256=fb4c5d0d67c2e0fa95f43bf995117dc4d8958809fb8d795522e647de85a2e7e4 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-04-18T13:28:57,344 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.5-py3-none-any.whl#sha256=5fef5da80583667be561af3afe70062d015ef24da71c3bef176043bea603c2c6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-04-18T13:28:57,345 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.4-py3-none-any.whl#sha256=d4956925426510d1496ee873465e8178b2599c2fc5e1329503d8335ce50fd1c6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-04-18T13:28:57,345 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.3-py3-none-any.whl#sha256=e570061be8379bb89033a1cbbb97eb0754c41fe0214fa16447a01c7ec91a1a9f (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-04-18T13:28:57,346 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.2-py3-none-any.whl#sha256=8525ddeb5820cac5646a8e64609c379dfeda0ef3c1e0fddf611b904fe6717f9a (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-04-18T13:28:57,346 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1-py3-none-any.whl#sha256=0d8958b6a96c5a8bbb5f56954b074f97f56f62d4bf7d2feb02f324fdd9365ce4 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-04-18T13:28:57,347 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1.dev1-py3-none-any.whl#sha256=d5e13258a7e5662c891cc5061dc517d14138a9ea76e72ad43d422c688c5c73b6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-04-18T13:28:57,347 Skipping link: not a file: https://www.piwheels.org/simple/atlas-densities/ 2024-04-18T13:28:57,348 Skipping link: not a file: https://pypi.org/simple/atlas-densities/ 2024-04-18T13:28:57,367 Given no hashes to check 1 links for project 'atlas-densities': discarding no candidates 2024-04-18T13:28:57,385 Collecting atlas-densities==0.2.4 2024-04-18T13:28:57,387 Created temporary directory: /tmp/pip-unpack-k_ryq4z8 2024-04-18T13:28:57,603 Downloading atlas-densities-0.2.4.tar.gz (1.3 MB) 2024-04-18T13:28:58,232 Added atlas-densities==0.2.4 from https://files.pythonhosted.org/packages/5b/b3/47076a1bc880f3dcfa3c42e0f1035d309317cb005e1ac829946a60b320e2/atlas-densities-0.2.4.tar.gz to build tracker '/tmp/pip-build-tracker-i0mvzbr5' 2024-04-18T13:28:58,234 Running setup.py (path:/tmp/pip-wheel-86k3teh5/atlas-densities_7d9659eafcaf4c1a834c1173ff542535/setup.py) egg_info for package atlas-densities 2024-04-18T13:28:58,235 Created temporary directory: /tmp/pip-pip-egg-info-9_i9lkbh 2024-04-18T13:28:58,236 Preparing metadata (setup.py): started 2024-04-18T13:28:58,237 Running command python setup.py egg_info 2024-04-18T13:28:58,917 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-04-18T13:28:58,917 !! 2024-04-18T13:28:58,918 ******************************************************************************** 2024-04-18T13:28:58,918 Requirements should be satisfied by a PEP 517 installer. 2024-04-18T13:28:58,919 If you are using pip, you can try `pip install --use-pep517`. 2024-04-18T13:28:58,919 ******************************************************************************** 2024-04-18T13:28:58,920 !! 2024-04-18T13:28:58,921 dist.fetch_build_eggs(dist.setup_requires) 2024-04-18T13:29:02,007 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2024-04-18T13:29:02,115 running egg_info 2024-04-18T13:29:02,117 creating /tmp/pip-pip-egg-info-9_i9lkbh/atlas_densities.egg-info 2024-04-18T13:29:02,144 writing /tmp/pip-pip-egg-info-9_i9lkbh/atlas_densities.egg-info/PKG-INFO 2024-04-18T13:29:02,149 writing dependency_links to /tmp/pip-pip-egg-info-9_i9lkbh/atlas_densities.egg-info/dependency_links.txt 2024-04-18T13:29:02,150 writing entry points to /tmp/pip-pip-egg-info-9_i9lkbh/atlas_densities.egg-info/entry_points.txt 2024-04-18T13:29:02,152 writing requirements to /tmp/pip-pip-egg-info-9_i9lkbh/atlas_densities.egg-info/requires.txt 2024-04-18T13:29:02,153 writing top-level names to /tmp/pip-pip-egg-info-9_i9lkbh/atlas_densities.egg-info/top_level.txt 2024-04-18T13:29:02,154 writing manifest file '/tmp/pip-pip-egg-info-9_i9lkbh/atlas_densities.egg-info/SOURCES.txt' 2024-04-18T13:29:02,330 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-18T13:29:02,337 reading manifest file '/tmp/pip-pip-egg-info-9_i9lkbh/atlas_densities.egg-info/SOURCES.txt' 2024-04-18T13:29:02,339 reading manifest template 'MANIFEST.in' 2024-04-18T13:29:02,367 adding license file 'LICENSE.txt' 2024-04-18T13:29:02,368 adding license file 'AUTHORS.txt' 2024-04-18T13:29:02,373 writing manifest file '/tmp/pip-pip-egg-info-9_i9lkbh/atlas_densities.egg-info/SOURCES.txt' 2024-04-18T13:29:02,489 Preparing metadata (setup.py): finished with status 'done' 2024-04-18T13:29:02,494 Source in /tmp/pip-wheel-86k3teh5/atlas-densities_7d9659eafcaf4c1a834c1173ff542535 has version 0.2.4, which satisfies requirement atlas-densities==0.2.4 from https://files.pythonhosted.org/packages/5b/b3/47076a1bc880f3dcfa3c42e0f1035d309317cb005e1ac829946a60b320e2/atlas-densities-0.2.4.tar.gz 2024-04-18T13:29:02,495 Removed atlas-densities==0.2.4 from https://files.pythonhosted.org/packages/5b/b3/47076a1bc880f3dcfa3c42e0f1035d309317cb005e1ac829946a60b320e2/atlas-densities-0.2.4.tar.gz from build tracker '/tmp/pip-build-tracker-i0mvzbr5' 2024-04-18T13:29:02,502 Created temporary directory: /tmp/pip-unpack-tofz6yfy 2024-04-18T13:29:02,503 Created temporary directory: /tmp/pip-unpack-11h_c3e5 2024-04-18T13:29:02,524 Building wheels for collected packages: atlas-densities 2024-04-18T13:29:02,528 Created temporary directory: /tmp/pip-wheel-u5poiga1 2024-04-18T13:29:02,528 Building wheel for atlas-densities (setup.py): started 2024-04-18T13:29:02,529 Destination directory: /tmp/pip-wheel-u5poiga1 2024-04-18T13:29:02,530 Running command python setup.py bdist_wheel 2024-04-18T13:29:03,209 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-04-18T13:29:03,210 !! 2024-04-18T13:29:03,210 ******************************************************************************** 2024-04-18T13:29:03,211 Requirements should be satisfied by a PEP 517 installer. 2024-04-18T13:29:03,211 If you are using pip, you can try `pip install --use-pep517`. 2024-04-18T13:29:03,212 ******************************************************************************** 2024-04-18T13:29:03,213 !! 2024-04-18T13:29:03,213 dist.fetch_build_eggs(dist.setup_requires) 2024-04-18T13:29:03,770 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2024-04-18T13:29:03,868 running bdist_wheel 2024-04-18T13:29:03,974 running build 2024-04-18T13:29:03,974 running build_py 2024-04-18T13:29:04,004 creating build 2024-04-18T13:29:04,004 creating build/lib 2024-04-18T13:29:04,005 creating build/lib/tests 2024-04-18T13:29:04,006 copying tests/utils.py -> build/lib/tests 2024-04-18T13:29:04,007 copying tests/test_utils.py -> build/lib/tests 2024-04-18T13:29:04,010 copying tests/__init__.py -> build/lib/tests 2024-04-18T13:29:04,011 copying tests/mocking_tools.py -> build/lib/tests 2024-04-18T13:29:04,013 creating build/lib/atlas_densities 2024-04-18T13:29:04,014 copying atlas_densities/version.py -> build/lib/atlas_densities 2024-04-18T13:29:04,016 copying atlas_densities/utils.py -> build/lib/atlas_densities 2024-04-18T13:29:04,018 copying atlas_densities/exceptions.py -> build/lib/atlas_densities 2024-04-18T13:29:04,020 copying atlas_densities/__init__.py -> build/lib/atlas_densities 2024-04-18T13:29:04,022 creating build/lib/tests/densities 2024-04-18T13:29:04,023 copying tests/densities/test_cell_density.py -> build/lib/tests/densities 2024-04-18T13:29:04,025 copying tests/densities/test_mtype_densities_from_profiles.py -> build/lib/tests/densities 2024-04-18T13:29:04,027 copying tests/densities/test_refined_inhibitory_neuron_density.py -> build/lib/tests/densities 2024-04-18T13:29:04,029 copying tests/densities/test_excitatory_inhibitory_splitting.py -> build/lib/tests/densities 2024-04-18T13:29:04,031 copying tests/densities/test_inhibitory_neuron_density_optimization.py -> build/lib/tests/densities 2024-04-18T13:29:04,034 copying tests/densities/test_mtype_densities_from_composition.py -> build/lib/tests/densities 2024-04-18T13:29:04,036 copying tests/densities/test_optimization_initialization.py -> build/lib/tests/densities 2024-04-18T13:29:04,038 copying tests/densities/test_inhibitory_neuron_density.py -> build/lib/tests/densities 2024-04-18T13:29:04,040 copying tests/densities/test_utils.py -> build/lib/tests/densities 2024-04-18T13:29:04,043 copying tests/densities/test_glia_densities.py -> build/lib/tests/densities 2024-04-18T13:29:04,044 copying tests/densities/test_measurement_to_density.py -> build/lib/tests/densities 2024-04-18T13:29:04,047 copying tests/densities/test_mtype_densities_from_map.py -> build/lib/tests/densities 2024-04-18T13:29:04,049 copying tests/densities/__init__.py -> build/lib/tests/densities 2024-04-18T13:29:04,051 copying tests/densities/test_inhibitory_neuron_densities_helper.py -> build/lib/tests/densities 2024-04-18T13:29:04,052 copying tests/densities/test_excel_reader.py -> build/lib/tests/densities 2024-04-18T13:29:04,054 copying tests/densities/test_fitting.py -> build/lib/tests/densities 2024-04-18T13:29:04,057 copying tests/densities/test_cell_counts.py -> build/lib/tests/densities 2024-04-18T13:29:04,059 creating build/lib/tests/combination 2024-04-18T13:29:04,062 copying tests/combination/test_annotations_combinator.py -> build/lib/tests/combination 2024-04-18T13:29:04,065 copying tests/combination/test_markers_combinator.py -> build/lib/tests/combination 2024-04-18T13:29:04,066 copying tests/combination/__init__.py -> build/lib/tests/combination 2024-04-18T13:29:04,068 creating build/lib/tests/app 2024-04-18T13:29:04,069 copying tests/app/test_cell_densities.py -> build/lib/tests/app 2024-04-18T13:29:04,072 copying tests/app/test_refined_inhibitory_neuron_densities.py -> build/lib/tests/app 2024-04-18T13:29:04,073 copying tests/app/test_mtype_densities.py -> build/lib/tests/app 2024-04-18T13:29:04,075 copying tests/app/test_combination.py -> build/lib/tests/app 2024-04-18T13:29:04,077 copying tests/app/__init__.py -> build/lib/tests/app 2024-04-18T13:29:04,079 creating build/lib/atlas_densities/densities 2024-04-18T13:29:04,080 copying atlas_densities/densities/glia_densities.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,082 copying atlas_densities/densities/mtype_densities_from_composition.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,084 copying atlas_densities/densities/cell_density.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,085 copying atlas_densities/densities/cell_counts.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,087 copying atlas_densities/densities/utils.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,090 copying atlas_densities/densities/mtype_densities_from_profiles.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,092 copying atlas_densities/densities/inhibitory_neuron_density.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,094 copying atlas_densities/densities/fitting.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,097 copying atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,099 copying atlas_densities/densities/__init__.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,100 copying atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,103 copying atlas_densities/densities/excitatory_inhibitory_splitting.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,104 copying atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,107 copying atlas_densities/densities/excel_reader.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,109 copying atlas_densities/densities/measurement_to_density.py -> build/lib/atlas_densities/densities 2024-04-18T13:29:04,112 creating build/lib/atlas_densities/combination 2024-04-18T13:29:04,113 copying atlas_densities/combination/markers_combinator.py -> build/lib/atlas_densities/combination 2024-04-18T13:29:04,115 copying atlas_densities/combination/annotations_combinator.py -> build/lib/atlas_densities/combination 2024-04-18T13:29:04,117 copying atlas_densities/combination/__init__.py -> build/lib/atlas_densities/combination 2024-04-18T13:29:04,119 creating build/lib/atlas_densities/app 2024-04-18T13:29:04,120 copying atlas_densities/app/mtype_densities.py -> build/lib/atlas_densities/app 2024-04-18T13:29:04,123 copying atlas_densities/app/cli.py -> build/lib/atlas_densities/app 2024-04-18T13:29:04,124 copying atlas_densities/app/utils.py -> build/lib/atlas_densities/app 2024-04-18T13:29:04,126 copying atlas_densities/app/combination.py -> build/lib/atlas_densities/app 2024-04-18T13:29:04,128 copying atlas_densities/app/__init__.py -> build/lib/atlas_densities/app 2024-04-18T13:29:04,130 copying atlas_densities/app/cell_densities.py -> build/lib/atlas_densities/app 2024-04-18T13:29:04,133 creating build/lib/atlas_densities/densities/mtype_densities_from_map 2024-04-18T13:29:04,134 copying atlas_densities/densities/mtype_densities_from_map/utils.py -> build/lib/atlas_densities/densities/mtype_densities_from_map 2024-04-18T13:29:04,136 copying atlas_densities/densities/mtype_densities_from_map/__init__.py -> build/lib/atlas_densities/densities/mtype_densities_from_map 2024-04-18T13:29:04,137 copying atlas_densities/densities/mtype_densities_from_map/create.py -> build/lib/atlas_densities/densities/mtype_densities_from_map 2024-04-18T13:29:04,139 creating build/lib/atlas_densities/app/data 2024-04-18T13:29:04,140 copying atlas_densities/app/data/__init__.py -> build/lib/atlas_densities/app/data 2024-04-18T13:29:04,142 running egg_info 2024-04-18T13:29:04,196 writing atlas_densities.egg-info/PKG-INFO 2024-04-18T13:29:04,200 writing dependency_links to atlas_densities.egg-info/dependency_links.txt 2024-04-18T13:29:04,202 writing entry points to atlas_densities.egg-info/entry_points.txt 2024-04-18T13:29:04,204 writing requirements to atlas_densities.egg-info/requires.txt 2024-04-18T13:29:04,205 writing top-level names to atlas_densities.egg-info/top_level.txt 2024-04-18T13:29:04,303 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-18T13:29:04,306 reading manifest file 'atlas_densities.egg-info/SOURCES.txt' 2024-04-18T13:29:04,314 reading manifest template 'MANIFEST.in' 2024-04-18T13:29:04,340 adding license file 'LICENSE.txt' 2024-04-18T13:29:04,341 adding license file 'AUTHORS.txt' 2024-04-18T13:29:04,348 writing manifest file 'atlas_densities.egg-info/SOURCES.txt' 2024-04-18T13:29:04,351 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.markers' is absent from the `packages` configuration. 2024-04-18T13:29:04,352 !! 2024-04-18T13:29:04,353 ******************************************************************************** 2024-04-18T13:29:04,353 ############################ 2024-04-18T13:29:04,354 # Package would be ignored # 2024-04-18T13:29:04,354 ############################ 2024-04-18T13:29:04,355 Python recognizes 'atlas_densities.app.data.markers' as an importable package[^1], 2024-04-18T13:29:04,355 but it is absent from setuptools' `packages` configuration. 2024-04-18T13:29:04,357 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-18T13:29:04,357 package, please make sure that 'atlas_densities.app.data.markers' is explicitly added 2024-04-18T13:29:04,358 to the `packages` configuration field. 2024-04-18T13:29:04,359 Alternatively, you can also rely on setuptools' discovery methods 2024-04-18T13:29:04,360 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-18T13:29:04,360 instead of `find_packages(...)`/`find:`). 2024-04-18T13:29:04,362 You can read more about "package discovery" on setuptools documentation page: 2024-04-18T13:29:04,363 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-18T13:29:04,364 If you don't want 'atlas_densities.app.data.markers' to be distributed and are 2024-04-18T13:29:04,365 already explicitly excluding 'atlas_densities.app.data.markers' via 2024-04-18T13:29:04,365 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-18T13:29:04,366 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-18T13:29:04,366 combination with a more fine grained `package-data` configuration. 2024-04-18T13:29:04,368 You can read more about "package data files" on setuptools documentation page: 2024-04-18T13:29:04,369 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-18T13:29:04,370 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-18T13:29:04,371 even if it does not contain any `.py` files. 2024-04-18T13:29:04,372 On the other hand, currently there is no concept of package data 2024-04-18T13:29:04,372 directory, all directories are treated like packages. 2024-04-18T13:29:04,373 ******************************************************************************** 2024-04-18T13:29:04,374 !! 2024-04-18T13:29:04,374 check.warn(importable) 2024-04-18T13:29:04,375 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.measurements' is absent from the `packages` configuration. 2024-04-18T13:29:04,376 !! 2024-04-18T13:29:04,377 ******************************************************************************** 2024-04-18T13:29:04,380 ############################ 2024-04-18T13:29:04,385 # Package would be ignored # 2024-04-18T13:29:04,386 ############################ 2024-04-18T13:29:04,386 Python recognizes 'atlas_densities.app.data.measurements' as an importable package[^1], 2024-04-18T13:29:04,387 but it is absent from setuptools' `packages` configuration. 2024-04-18T13:29:04,387 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-18T13:29:04,388 package, please make sure that 'atlas_densities.app.data.measurements' is explicitly added 2024-04-18T13:29:04,388 to the `packages` configuration field. 2024-04-18T13:29:04,389 Alternatively, you can also rely on setuptools' discovery methods 2024-04-18T13:29:04,390 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-18T13:29:04,390 instead of `find_packages(...)`/`find:`). 2024-04-18T13:29:04,391 You can read more about "package discovery" on setuptools documentation page: 2024-04-18T13:29:04,392 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-18T13:29:04,393 If you don't want 'atlas_densities.app.data.measurements' to be distributed and are 2024-04-18T13:29:04,394 already explicitly excluding 'atlas_densities.app.data.measurements' via 2024-04-18T13:29:04,394 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-18T13:29:04,395 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-18T13:29:04,395 combination with a more fine grained `package-data` configuration. 2024-04-18T13:29:04,396 You can read more about "package data files" on setuptools documentation page: 2024-04-18T13:29:04,397 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-18T13:29:04,399 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-18T13:29:04,399 even if it does not contain any `.py` files. 2024-04-18T13:29:04,400 On the other hand, currently there is no concept of package data 2024-04-18T13:29:04,401 directory, all directories are treated like packages. 2024-04-18T13:29:04,402 ******************************************************************************** 2024-04-18T13:29:04,403 !! 2024-04-18T13:29:04,404 check.warn(importable) 2024-04-18T13:29:04,404 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.metadata' is absent from the `packages` configuration. 2024-04-18T13:29:04,405 !! 2024-04-18T13:29:04,406 ******************************************************************************** 2024-04-18T13:29:04,407 ############################ 2024-04-18T13:29:04,408 # Package would be ignored # 2024-04-18T13:29:04,408 ############################ 2024-04-18T13:29:04,409 Python recognizes 'atlas_densities.app.data.metadata' as an importable package[^1], 2024-04-18T13:29:04,410 but it is absent from setuptools' `packages` configuration. 2024-04-18T13:29:04,411 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-18T13:29:04,412 package, please make sure that 'atlas_densities.app.data.metadata' is explicitly added 2024-04-18T13:29:04,412 to the `packages` configuration field. 2024-04-18T13:29:04,414 Alternatively, you can also rely on setuptools' discovery methods 2024-04-18T13:29:04,414 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-18T13:29:04,415 instead of `find_packages(...)`/`find:`). 2024-04-18T13:29:04,417 You can read more about "package discovery" on setuptools documentation page: 2024-04-18T13:29:04,418 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-18T13:29:04,419 If you don't want 'atlas_densities.app.data.metadata' to be distributed and are 2024-04-18T13:29:04,420 already explicitly excluding 'atlas_densities.app.data.metadata' via 2024-04-18T13:29:04,420 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-18T13:29:04,421 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-18T13:29:04,422 combination with a more fine grained `package-data` configuration. 2024-04-18T13:29:04,429 You can read more about "package data files" on setuptools documentation page: 2024-04-18T13:29:04,432 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-18T13:29:04,433 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-18T13:29:04,434 even if it does not contain any `.py` files. 2024-04-18T13:29:04,434 On the other hand, currently there is no concept of package data 2024-04-18T13:29:04,435 directory, all directories are treated like packages. 2024-04-18T13:29:04,435 ******************************************************************************** 2024-04-18T13:29:04,436 !! 2024-04-18T13:29:04,437 check.warn(importable) 2024-04-18T13:29:04,437 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes' is absent from the `packages` configuration. 2024-04-18T13:29:04,438 !! 2024-04-18T13:29:04,439 ******************************************************************************** 2024-04-18T13:29:04,440 ############################ 2024-04-18T13:29:04,440 # Package would be ignored # 2024-04-18T13:29:04,441 ############################ 2024-04-18T13:29:04,441 Python recognizes 'atlas_densities.app.data.mtypes' as an importable package[^1], 2024-04-18T13:29:04,442 but it is absent from setuptools' `packages` configuration. 2024-04-18T13:29:04,443 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-18T13:29:04,445 package, please make sure that 'atlas_densities.app.data.mtypes' is explicitly added 2024-04-18T13:29:04,445 to the `packages` configuration field. 2024-04-18T13:29:04,446 Alternatively, you can also rely on setuptools' discovery methods 2024-04-18T13:29:04,447 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-18T13:29:04,447 instead of `find_packages(...)`/`find:`). 2024-04-18T13:29:04,448 You can read more about "package discovery" on setuptools documentation page: 2024-04-18T13:29:04,450 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-18T13:29:04,450 If you don't want 'atlas_densities.app.data.mtypes' to be distributed and are 2024-04-18T13:29:04,451 already explicitly excluding 'atlas_densities.app.data.mtypes' via 2024-04-18T13:29:04,452 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-18T13:29:04,452 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-18T13:29:04,453 combination with a more fine grained `package-data` configuration. 2024-04-18T13:29:04,454 You can read more about "package data files" on setuptools documentation page: 2024-04-18T13:29:04,455 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-18T13:29:04,457 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-18T13:29:04,458 even if it does not contain any `.py` files. 2024-04-18T13:29:04,458 On the other hand, currently there is no concept of package data 2024-04-18T13:29:04,458 directory, all directories are treated like packages. 2024-04-18T13:29:04,459 ******************************************************************************** 2024-04-18T13:29:04,460 !! 2024-04-18T13:29:04,460 check.warn(importable) 2024-04-18T13:29:04,461 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.composition' is absent from the `packages` configuration. 2024-04-18T13:29:04,461 !! 2024-04-18T13:29:04,462 ******************************************************************************** 2024-04-18T13:29:04,462 ############################ 2024-04-18T13:29:04,463 # Package would be ignored # 2024-04-18T13:29:04,465 ############################ 2024-04-18T13:29:04,467 Python recognizes 'atlas_densities.app.data.mtypes.composition' as an importable package[^1], 2024-04-18T13:29:04,469 but it is absent from setuptools' `packages` configuration. 2024-04-18T13:29:04,473 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-18T13:29:04,473 package, please make sure that 'atlas_densities.app.data.mtypes.composition' is explicitly added 2024-04-18T13:29:04,474 to the `packages` configuration field. 2024-04-18T13:29:04,477 Alternatively, you can also rely on setuptools' discovery methods 2024-04-18T13:29:04,479 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-18T13:29:04,480 instead of `find_packages(...)`/`find:`). 2024-04-18T13:29:04,481 You can read more about "package discovery" on setuptools documentation page: 2024-04-18T13:29:04,482 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-18T13:29:04,483 If you don't want 'atlas_densities.app.data.mtypes.composition' to be distributed and are 2024-04-18T13:29:04,484 already explicitly excluding 'atlas_densities.app.data.mtypes.composition' via 2024-04-18T13:29:04,484 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-18T13:29:04,485 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-18T13:29:04,486 combination with a more fine grained `package-data` configuration. 2024-04-18T13:29:04,487 You can read more about "package data files" on setuptools documentation page: 2024-04-18T13:29:04,488 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-18T13:29:04,490 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-18T13:29:04,490 even if it does not contain any `.py` files. 2024-04-18T13:29:04,491 On the other hand, currently there is no concept of package data 2024-04-18T13:29:04,491 directory, all directories are treated like packages. 2024-04-18T13:29:04,492 ******************************************************************************** 2024-04-18T13:29:04,493 !! 2024-04-18T13:29:04,493 check.warn(importable) 2024-04-18T13:29:04,494 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.density_profiles' is absent from the `packages` configuration. 2024-04-18T13:29:04,494 !! 2024-04-18T13:29:04,495 ******************************************************************************** 2024-04-18T13:29:04,496 ############################ 2024-04-18T13:29:04,496 # Package would be ignored # 2024-04-18T13:29:04,497 ############################ 2024-04-18T13:29:04,497 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles' as an importable package[^1], 2024-04-18T13:29:04,498 but it is absent from setuptools' `packages` configuration. 2024-04-18T13:29:04,500 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-18T13:29:04,501 package, please make sure that 'atlas_densities.app.data.mtypes.density_profiles' is explicitly added 2024-04-18T13:29:04,501 to the `packages` configuration field. 2024-04-18T13:29:04,502 Alternatively, you can also rely on setuptools' discovery methods 2024-04-18T13:29:04,503 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-18T13:29:04,504 instead of `find_packages(...)`/`find:`). 2024-04-18T13:29:04,505 You can read more about "package discovery" on setuptools documentation page: 2024-04-18T13:29:04,506 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-18T13:29:04,506 If you don't want 'atlas_densities.app.data.mtypes.density_profiles' to be distributed and are 2024-04-18T13:29:04,507 already explicitly excluding 'atlas_densities.app.data.mtypes.density_profiles' via 2024-04-18T13:29:04,507 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-18T13:29:04,508 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-18T13:29:04,508 combination with a more fine grained `package-data` configuration. 2024-04-18T13:29:04,509 You can read more about "package data files" on setuptools documentation page: 2024-04-18T13:29:04,510 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-18T13:29:04,511 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-18T13:29:04,512 even if it does not contain any `.py` files. 2024-04-18T13:29:04,512 On the other hand, currently there is no concept of package data 2024-04-18T13:29:04,513 directory, all directories are treated like packages. 2024-04-18T13:29:04,513 ******************************************************************************** 2024-04-18T13:29:04,514 !! 2024-04-18T13:29:04,515 check.warn(importable) 2024-04-18T13:29:04,515 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.density_profiles.meta' is absent from the `packages` configuration. 2024-04-18T13:29:04,516 !! 2024-04-18T13:29:04,517 ******************************************************************************** 2024-04-18T13:29:04,517 ############################ 2024-04-18T13:29:04,518 # Package would be ignored # 2024-04-18T13:29:04,518 ############################ 2024-04-18T13:29:04,519 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.meta' as an importable package[^1], 2024-04-18T13:29:04,519 but it is absent from setuptools' `packages` configuration. 2024-04-18T13:29:04,520 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-18T13:29:04,521 package, please make sure that 'atlas_densities.app.data.mtypes.density_profiles.meta' is explicitly added 2024-04-18T13:29:04,522 to the `packages` configuration field. 2024-04-18T13:29:04,523 Alternatively, you can also rely on setuptools' discovery methods 2024-04-18T13:29:04,524 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-18T13:29:04,524 instead of `find_packages(...)`/`find:`). 2024-04-18T13:29:04,525 You can read more about "package discovery" on setuptools documentation page: 2024-04-18T13:29:04,526 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-18T13:29:04,527 If you don't want 'atlas_densities.app.data.mtypes.density_profiles.meta' to be distributed and are 2024-04-18T13:29:04,528 already explicitly excluding 'atlas_densities.app.data.mtypes.density_profiles.meta' via 2024-04-18T13:29:04,529 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-18T13:29:04,529 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-18T13:29:04,530 combination with a more fine grained `package-data` configuration. 2024-04-18T13:29:04,531 You can read more about "package data files" on setuptools documentation page: 2024-04-18T13:29:04,532 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-18T13:29:04,533 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-18T13:29:04,533 even if it does not contain any `.py` files. 2024-04-18T13:29:04,534 On the other hand, currently there is no concept of package data 2024-04-18T13:29:04,534 directory, all directories are treated like packages. 2024-04-18T13:29:04,535 ******************************************************************************** 2024-04-18T13:29:04,536 !! 2024-04-18T13:29:04,536 check.warn(importable) 2024-04-18T13:29:04,537 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.density_profiles.profiles' is absent from the `packages` configuration. 2024-04-18T13:29:04,537 !! 2024-04-18T13:29:04,539 ******************************************************************************** 2024-04-18T13:29:04,539 ############################ 2024-04-18T13:29:04,540 # Package would be ignored # 2024-04-18T13:29:04,540 ############################ 2024-04-18T13:29:04,541 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.profiles' as an importable package[^1], 2024-04-18T13:29:04,541 but it is absent from setuptools' `packages` configuration. 2024-04-18T13:29:04,542 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-18T13:29:04,543 package, please make sure that 'atlas_densities.app.data.mtypes.density_profiles.profiles' is explicitly added 2024-04-18T13:29:04,543 to the `packages` configuration field. 2024-04-18T13:29:04,544 Alternatively, you can also rely on setuptools' discovery methods 2024-04-18T13:29:04,545 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-18T13:29:04,545 instead of `find_packages(...)`/`find:`). 2024-04-18T13:29:04,546 You can read more about "package discovery" on setuptools documentation page: 2024-04-18T13:29:04,547 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-18T13:29:04,548 If you don't want 'atlas_densities.app.data.mtypes.density_profiles.profiles' to be distributed and are 2024-04-18T13:29:04,549 already explicitly excluding 'atlas_densities.app.data.mtypes.density_profiles.profiles' via 2024-04-18T13:29:04,549 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-18T13:29:04,550 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-18T13:29:04,550 combination with a more fine grained `package-data` configuration. 2024-04-18T13:29:04,551 You can read more about "package data files" on setuptools documentation page: 2024-04-18T13:29:04,552 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-18T13:29:04,554 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-18T13:29:04,554 even if it does not contain any `.py` files. 2024-04-18T13:29:04,555 On the other hand, currently there is no concept of package data 2024-04-18T13:29:04,555 directory, all directories are treated like packages. 2024-04-18T13:29:04,556 ******************************************************************************** 2024-04-18T13:29:04,557 !! 2024-04-18T13:29:04,557 check.warn(importable) 2024-04-18T13:29:04,558 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.probability_map' is absent from the `packages` configuration. 2024-04-18T13:29:04,558 !! 2024-04-18T13:29:04,559 ******************************************************************************** 2024-04-18T13:29:04,559 ############################ 2024-04-18T13:29:04,560 # Package would be ignored # 2024-04-18T13:29:04,560 ############################ 2024-04-18T13:29:04,560 Python recognizes 'atlas_densities.app.data.mtypes.probability_map' as an importable package[^1], 2024-04-18T13:29:04,561 but it is absent from setuptools' `packages` configuration. 2024-04-18T13:29:04,562 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-18T13:29:04,562 package, please make sure that 'atlas_densities.app.data.mtypes.probability_map' is explicitly added 2024-04-18T13:29:04,563 to the `packages` configuration field. 2024-04-18T13:29:04,563 Alternatively, you can also rely on setuptools' discovery methods 2024-04-18T13:29:04,564 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-18T13:29:04,564 instead of `find_packages(...)`/`find:`). 2024-04-18T13:29:04,565 You can read more about "package discovery" on setuptools documentation page: 2024-04-18T13:29:04,566 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-18T13:29:04,567 If you don't want 'atlas_densities.app.data.mtypes.probability_map' to be distributed and are 2024-04-18T13:29:04,567 already explicitly excluding 'atlas_densities.app.data.mtypes.probability_map' via 2024-04-18T13:29:04,568 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-18T13:29:04,568 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-18T13:29:04,569 combination with a more fine grained `package-data` configuration. 2024-04-18T13:29:04,570 You can read more about "package data files" on setuptools documentation page: 2024-04-18T13:29:04,571 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-18T13:29:04,572 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-18T13:29:04,573 even if it does not contain any `.py` files. 2024-04-18T13:29:04,573 On the other hand, currently there is no concept of package data 2024-04-18T13:29:04,574 directory, all directories are treated like packages. 2024-04-18T13:29:04,574 ******************************************************************************** 2024-04-18T13:29:04,575 !! 2024-04-18T13:29:04,576 check.warn(importable) 2024-04-18T13:29:04,576 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'tests.densities.data.meta' is absent from the `packages` configuration. 2024-04-18T13:29:04,577 !! 2024-04-18T13:29:04,578 ******************************************************************************** 2024-04-18T13:29:04,578 ############################ 2024-04-18T13:29:04,579 # Package would be ignored # 2024-04-18T13:29:04,579 ############################ 2024-04-18T13:29:04,580 Python recognizes 'tests.densities.data.meta' as an importable package[^1], 2024-04-18T13:29:04,580 but it is absent from setuptools' `packages` configuration. 2024-04-18T13:29:04,581 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-18T13:29:04,582 package, please make sure that 'tests.densities.data.meta' is explicitly added 2024-04-18T13:29:04,582 to the `packages` configuration field. 2024-04-18T13:29:04,584 Alternatively, you can also rely on setuptools' discovery methods 2024-04-18T13:29:04,584 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-18T13:29:04,584 instead of `find_packages(...)`/`find:`). 2024-04-18T13:29:04,585 You can read more about "package discovery" on setuptools documentation page: 2024-04-18T13:29:04,586 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-18T13:29:04,587 If you don't want 'tests.densities.data.meta' to be distributed and are 2024-04-18T13:29:04,587 already explicitly excluding 'tests.densities.data.meta' via 2024-04-18T13:29:04,588 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-18T13:29:04,588 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-18T13:29:04,588 combination with a more fine grained `package-data` configuration. 2024-04-18T13:29:04,589 You can read more about "package data files" on setuptools documentation page: 2024-04-18T13:29:04,590 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-18T13:29:04,591 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-18T13:29:04,592 even if it does not contain any `.py` files. 2024-04-18T13:29:04,592 On the other hand, currently there is no concept of package data 2024-04-18T13:29:04,593 directory, all directories are treated like packages. 2024-04-18T13:29:04,593 ******************************************************************************** 2024-04-18T13:29:04,594 !! 2024-04-18T13:29:04,595 check.warn(importable) 2024-04-18T13:29:04,595 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'tests.densities.data.mtypes' is absent from the `packages` configuration. 2024-04-18T13:29:04,596 !! 2024-04-18T13:29:04,596 ******************************************************************************** 2024-04-18T13:29:04,597 ############################ 2024-04-18T13:29:04,597 # Package would be ignored # 2024-04-18T13:29:04,598 ############################ 2024-04-18T13:29:04,598 Python recognizes 'tests.densities.data.mtypes' as an importable package[^1], 2024-04-18T13:29:04,599 but it is absent from setuptools' `packages` configuration. 2024-04-18T13:29:04,600 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-18T13:29:04,600 package, please make sure that 'tests.densities.data.mtypes' is explicitly added 2024-04-18T13:29:04,601 to the `packages` configuration field. 2024-04-18T13:29:04,602 Alternatively, you can also rely on setuptools' discovery methods 2024-04-18T13:29:04,602 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-18T13:29:04,603 instead of `find_packages(...)`/`find:`). 2024-04-18T13:29:04,604 You can read more about "package discovery" on setuptools documentation page: 2024-04-18T13:29:04,605 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-18T13:29:04,606 If you don't want 'tests.densities.data.mtypes' to be distributed and are 2024-04-18T13:29:04,606 already explicitly excluding 'tests.densities.data.mtypes' via 2024-04-18T13:29:04,607 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-18T13:29:04,608 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-18T13:29:04,608 combination with a more fine grained `package-data` configuration. 2024-04-18T13:29:04,609 You can read more about "package data files" on setuptools documentation page: 2024-04-18T13:29:04,611 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-18T13:29:04,612 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-18T13:29:04,612 even if it does not contain any `.py` files. 2024-04-18T13:29:04,612 On the other hand, currently there is no concept of package data 2024-04-18T13:29:04,613 directory, all directories are treated like packages. 2024-04-18T13:29:04,613 ******************************************************************************** 2024-04-18T13:29:04,614 !! 2024-04-18T13:29:04,614 check.warn(importable) 2024-04-18T13:29:04,615 copying tests/1.json -> build/lib/tests 2024-04-18T13:29:04,615 copying tests/markers_config.yaml -> build/lib/tests 2024-04-18T13:29:04,616 creating build/lib/tests/densities/data 2024-04-18T13:29:04,616 creating build/lib/tests/densities/data/meta 2024-04-18T13:29:04,616 copying tests/densities/data/meta/layers.tsv -> build/lib/tests/densities/data/meta 2024-04-18T13:29:04,617 copying tests/densities/data/meta/mapping.tsv -> build/lib/tests/densities/data/meta 2024-04-18T13:29:04,617 copying tests/densities/data/meta/mapping_exc_only.tsv -> build/lib/tests/densities/data/meta 2024-04-18T13:29:04,618 creating build/lib/tests/densities/data/mtypes 2024-04-18T13:29:04,618 copying tests/densities/data/mtypes/BP.dat -> build/lib/tests/densities/data/mtypes 2024-04-18T13:29:04,619 copying tests/densities/data/mtypes/L2_IPC.dat -> build/lib/tests/densities/data/mtypes 2024-04-18T13:29:04,619 copying tests/densities/data/mtypes/L2_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2024-04-18T13:29:04,619 copying tests/densities/data/mtypes/L3_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2024-04-18T13:29:04,620 copying tests/densities/data/mtypes/L3_TPC-B.dat -> build/lib/tests/densities/data/mtypes 2024-04-18T13:29:04,620 copying tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/lib/tests/densities/data/mtypes 2024-04-18T13:29:04,621 copying atlas_densities/app/data/1.json -> build/lib/atlas_densities/app/data 2024-04-18T13:29:04,621 creating build/lib/atlas_densities/app/data/markers 2024-04-18T13:29:04,622 copying atlas_densities/app/data/markers/README.rst -> build/lib/atlas_densities/app/data/markers 2024-04-18T13:29:04,622 copying atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2024-04-18T13:29:04,623 copying atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2024-04-18T13:29:04,623 copying atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/lib/atlas_densities/app/data/markers 2024-04-18T13:29:04,624 copying atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/lib/atlas_densities/app/data/markers 2024-04-18T13:29:04,624 creating build/lib/atlas_densities/app/data/measurements 2024-04-18T13:29:04,625 copying atlas_densities/app/data/measurements/README.rst -> build/lib/atlas_densities/app/data/measurements 2024-04-18T13:29:04,625 copying atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/lib/atlas_densities/app/data/measurements 2024-04-18T13:29:04,626 copying atlas_densities/app/data/measurements/homogenous_regions.csv -> build/lib/atlas_densities/app/data/measurements 2024-04-18T13:29:04,626 copying atlas_densities/app/data/measurements/measurements.csv -> build/lib/atlas_densities/app/data/measurements 2024-04-18T13:29:04,627 copying atlas_densities/app/data/measurements/mmc1.xlsx -> build/lib/atlas_densities/app/data/measurements 2024-04-18T13:29:04,627 copying atlas_densities/app/data/measurements/mmc3.xlsx -> build/lib/atlas_densities/app/data/measurements 2024-04-18T13:29:04,628 copying atlas_densities/app/data/measurements/non_density_measurements.csv -> build/lib/atlas_densities/app/data/measurements 2024-04-18T13:29:04,628 copying atlas_densities/app/data/measurements/std_cells.json -> build/lib/atlas_densities/app/data/measurements 2024-04-18T13:29:04,629 creating build/lib/atlas_densities/app/data/metadata 2024-04-18T13:29:04,629 copying atlas_densities/app/data/metadata/README.txt -> build/lib/atlas_densities/app/data/metadata 2024-04-18T13:29:04,630 copying atlas_densities/app/data/metadata/ca1_metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-04-18T13:29:04,630 copying atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json -> build/lib/atlas_densities/app/data/metadata 2024-04-18T13:29:04,630 copying atlas_densities/app/data/metadata/group_ids.json -> build/lib/atlas_densities/app/data/metadata 2024-04-18T13:29:04,631 copying atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-04-18T13:29:04,631 copying atlas_densities/app/data/metadata/isocortex_metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-04-18T13:29:04,632 copying atlas_densities/app/data/metadata/metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-04-18T13:29:04,632 copying atlas_densities/app/data/metadata/thalamus_metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-04-18T13:29:04,632 creating build/lib/atlas_densities/app/data/mtypes 2024-04-18T13:29:04,633 copying atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv -> build/lib/atlas_densities/app/data/mtypes 2024-04-18T13:29:04,633 copying atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/lib/atlas_densities/app/data/mtypes 2024-04-18T13:29:04,634 creating build/lib/atlas_densities/app/data/mtypes/composition 2024-04-18T13:29:04,634 copying atlas_densities/app/data/mtypes/composition/README.rst -> build/lib/atlas_densities/app/data/mtypes/composition 2024-04-18T13:29:04,635 copying atlas_densities/app/data/mtypes/composition/composition.yaml -> build/lib/atlas_densities/app/data/mtypes/composition 2024-04-18T13:29:04,635 copying atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/lib/atlas_densities/app/data/mtypes/composition 2024-04-18T13:29:04,636 creating build/lib/atlas_densities/app/data/mtypes/density_profiles 2024-04-18T13:29:04,636 copying atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/lib/atlas_densities/app/data/mtypes/density_profiles 2024-04-18T13:29:04,636 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2024-04-18T13:29:04,637 copying atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2024-04-18T13:29:04,637 copying atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2024-04-18T13:29:04,638 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,638 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,639 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,639 copying atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,640 copying atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,640 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,641 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,641 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,642 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,643 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,643 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,643 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,644 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,644 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,645 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,645 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,645 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,646 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,646 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,647 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,647 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,648 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,649 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,649 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,650 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,651 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,651 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,652 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,652 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,653 copying atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,654 copying atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,654 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,655 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,656 copying atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:04,656 creating build/lib/atlas_densities/app/data/mtypes/probability_map 2024-04-18T13:29:04,657 copying atlas_densities/app/data/mtypes/probability_map/README.rst -> build/lib/atlas_densities/app/data/mtypes/probability_map 2024-04-18T13:29:04,657 copying atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/lib/atlas_densities/app/data/mtypes/probability_map 2024-04-18T13:29:04,704 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-04-18T13:29:04,705 !! 2024-04-18T13:29:04,706 ******************************************************************************** 2024-04-18T13:29:04,706 Please avoid running ``setup.py`` directly. 2024-04-18T13:29:04,707 Instead, use pypa/build, pypa/installer or other 2024-04-18T13:29:04,707 standards-based tools. 2024-04-18T13:29:04,708 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-04-18T13:29:04,708 ******************************************************************************** 2024-04-18T13:29:04,709 !! 2024-04-18T13:29:04,710 self.initialize_options() 2024-04-18T13:29:04,733 installing to build/bdist.linux-armv7l/wheel 2024-04-18T13:29:04,734 running install 2024-04-18T13:29:04,758 running install_lib 2024-04-18T13:29:04,785 creating build/bdist.linux-armv7l 2024-04-18T13:29:04,786 creating build/bdist.linux-armv7l/wheel 2024-04-18T13:29:04,787 creating build/bdist.linux-armv7l/wheel/tests 2024-04-18T13:29:04,788 copying build/lib/tests/1.json -> build/bdist.linux-armv7l/wheel/tests 2024-04-18T13:29:04,805 copying build/lib/tests/utils.py -> build/bdist.linux-armv7l/wheel/tests 2024-04-18T13:29:04,807 creating build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,808 creating build/bdist.linux-armv7l/wheel/tests/densities/data 2024-04-18T13:29:04,810 creating build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-04-18T13:29:04,811 copying build/lib/tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-04-18T13:29:04,813 copying build/lib/tests/densities/data/mtypes/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-04-18T13:29:04,815 copying build/lib/tests/densities/data/mtypes/BP.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-04-18T13:29:04,816 copying build/lib/tests/densities/data/mtypes/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-04-18T13:29:04,818 copying build/lib/tests/densities/data/mtypes/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-04-18T13:29:04,820 copying build/lib/tests/densities/data/mtypes/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-04-18T13:29:04,822 creating build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2024-04-18T13:29:04,823 copying build/lib/tests/densities/data/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2024-04-18T13:29:04,825 copying build/lib/tests/densities/data/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2024-04-18T13:29:04,827 copying build/lib/tests/densities/data/meta/mapping_exc_only.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2024-04-18T13:29:04,834 copying build/lib/tests/densities/test_cell_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,836 copying build/lib/tests/densities/test_mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,839 copying build/lib/tests/densities/test_refined_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,841 copying build/lib/tests/densities/test_excitatory_inhibitory_splitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,844 copying build/lib/tests/densities/test_inhibitory_neuron_density_optimization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,846 copying build/lib/tests/densities/test_mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,848 copying build/lib/tests/densities/test_optimization_initialization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,851 copying build/lib/tests/densities/test_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,853 copying build/lib/tests/densities/test_utils.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,855 copying build/lib/tests/densities/test_glia_densities.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,857 copying build/lib/tests/densities/test_measurement_to_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,859 copying build/lib/tests/densities/test_mtype_densities_from_map.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,862 copying build/lib/tests/densities/__init__.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,863 copying build/lib/tests/densities/test_inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,865 copying build/lib/tests/densities/test_excel_reader.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,867 copying build/lib/tests/densities/test_fitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,870 copying build/lib/tests/densities/test_cell_counts.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-04-18T13:29:04,872 copying build/lib/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/tests 2024-04-18T13:29:04,874 creating build/bdist.linux-armv7l/wheel/tests/combination 2024-04-18T13:29:04,875 copying build/lib/tests/combination/test_annotations_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2024-04-18T13:29:04,877 copying build/lib/tests/combination/test_markers_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2024-04-18T13:29:04,879 copying build/lib/tests/combination/__init__.py -> build/bdist.linux-armv7l/wheel/tests/combination 2024-04-18T13:29:04,881 copying build/lib/tests/markers_config.yaml -> build/bdist.linux-armv7l/wheel/tests 2024-04-18T13:29:04,883 creating build/bdist.linux-armv7l/wheel/tests/app 2024-04-18T13:29:04,884 copying build/lib/tests/app/test_cell_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-04-18T13:29:04,886 copying build/lib/tests/app/test_refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-04-18T13:29:04,888 copying build/lib/tests/app/test_mtype_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-04-18T13:29:04,890 copying build/lib/tests/app/test_combination.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-04-18T13:29:04,893 copying build/lib/tests/app/__init__.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-04-18T13:29:04,894 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2024-04-18T13:29:04,895 copying build/lib/tests/mocking_tools.py -> build/bdist.linux-armv7l/wheel/tests 2024-04-18T13:29:04,898 creating build/bdist.linux-armv7l/wheel/atlas_densities 2024-04-18T13:29:04,899 copying build/lib/atlas_densities/version.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2024-04-18T13:29:04,901 copying build/lib/atlas_densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2024-04-18T13:29:04,903 creating build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,904 copying build/lib/atlas_densities/densities/glia_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,906 copying build/lib/atlas_densities/densities/mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,908 copying build/lib/atlas_densities/densities/cell_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,910 copying build/lib/atlas_densities/densities/cell_counts.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,913 copying build/lib/atlas_densities/densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,915 copying build/lib/atlas_densities/densities/mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,918 copying build/lib/atlas_densities/densities/inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,921 creating build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2024-04-18T13:29:04,921 copying build/lib/atlas_densities/densities/mtype_densities_from_map/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2024-04-18T13:29:04,923 copying build/lib/atlas_densities/densities/mtype_densities_from_map/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2024-04-18T13:29:04,925 copying build/lib/atlas_densities/densities/mtype_densities_from_map/create.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2024-04-18T13:29:04,927 copying build/lib/atlas_densities/densities/fitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,930 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,932 copying build/lib/atlas_densities/densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,933 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,936 copying build/lib/atlas_densities/densities/excitatory_inhibitory_splitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,938 copying build/lib/atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,941 copying build/lib/atlas_densities/densities/excel_reader.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,944 copying build/lib/atlas_densities/densities/measurement_to_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-04-18T13:29:04,947 creating build/bdist.linux-armv7l/wheel/atlas_densities/combination 2024-04-18T13:29:04,948 copying build/lib/atlas_densities/combination/markers_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2024-04-18T13:29:04,950 copying build/lib/atlas_densities/combination/annotations_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2024-04-18T13:29:04,952 copying build/lib/atlas_densities/combination/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2024-04-18T13:29:04,954 copying build/lib/atlas_densities/exceptions.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2024-04-18T13:29:04,956 creating build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-04-18T13:29:04,957 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2024-04-18T13:29:04,959 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-04-18T13:29:04,960 copying build/lib/atlas_densities/app/data/metadata/group_ids.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-04-18T13:29:04,962 copying build/lib/atlas_densities/app/data/metadata/thalamus_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-04-18T13:29:04,963 copying build/lib/atlas_densities/app/data/metadata/ca1_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-04-18T13:29:04,965 copying build/lib/atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-04-18T13:29:04,966 copying build/lib/atlas_densities/app/data/metadata/isocortex_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-04-18T13:29:04,968 copying build/lib/atlas_densities/app/data/metadata/README.txt -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-04-18T13:29:04,970 copying build/lib/atlas_densities/app/data/metadata/metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-04-18T13:29:04,971 copying build/lib/atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-04-18T13:29:04,973 copying build/lib/atlas_densities/app/data/1.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2024-04-18T13:29:04,985 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-04-18T13:29:04,986 copying build/lib/atlas_densities/app/data/measurements/measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-04-18T13:29:05,000 copying build/lib/atlas_densities/app/data/measurements/homogenous_regions.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-04-18T13:29:05,002 copying build/lib/atlas_densities/app/data/measurements/mmc3.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-04-18T13:29:05,010 copying build/lib/atlas_densities/app/data/measurements/non_density_measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-04-18T13:29:05,012 copying build/lib/atlas_densities/app/data/measurements/mmc1.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-04-18T13:29:05,020 copying build/lib/atlas_densities/app/data/measurements/std_cells.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-04-18T13:29:05,025 copying build/lib/atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-04-18T13:29:05,029 copying build/lib/atlas_densities/app/data/measurements/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-04-18T13:29:05,031 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2024-04-18T13:29:05,033 copying build/lib/atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2024-04-18T13:29:05,035 copying build/lib/atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2024-04-18T13:29:05,037 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2024-04-18T13:29:05,039 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,040 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,042 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,044 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,046 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,048 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,050 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,052 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,054 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,055 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,057 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,059 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,062 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,064 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,066 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,068 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,070 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,072 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,074 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,077 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,080 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,082 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,084 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,086 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,089 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,091 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,093 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,095 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,097 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,099 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,101 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,103 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,105 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,107 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-04-18T13:29:05,109 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2024-04-18T13:29:05,110 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2024-04-18T13:29:05,113 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2024-04-18T13:29:05,115 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2024-04-18T13:29:05,117 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2024-04-18T13:29:05,118 copying build/lib/atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2024-04-18T13:29:05,137 copying build/lib/atlas_densities/app/data/mtypes/probability_map/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2024-04-18T13:29:05,140 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2024-04-18T13:29:05,141 copying build/lib/atlas_densities/app/data/mtypes/composition/composition.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2024-04-18T13:29:05,143 copying build/lib/atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2024-04-18T13:29:05,145 copying build/lib/atlas_densities/app/data/mtypes/composition/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2024-04-18T13:29:05,147 copying build/lib/atlas_densities/app/data/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2024-04-18T13:29:05,150 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-04-18T13:29:05,151 copying build/lib/atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-04-18T13:29:05,153 copying build/lib/atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-04-18T13:29:05,155 copying build/lib/atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-04-18T13:29:05,157 copying build/lib/atlas_densities/app/data/markers/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-04-18T13:29:05,159 copying build/lib/atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-04-18T13:29:05,162 copying build/lib/atlas_densities/app/mtype_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-04-18T13:29:05,165 copying build/lib/atlas_densities/app/cli.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-04-18T13:29:05,167 copying build/lib/atlas_densities/app/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-04-18T13:29:05,169 copying build/lib/atlas_densities/app/combination.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-04-18T13:29:05,171 copying build/lib/atlas_densities/app/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-04-18T13:29:05,173 copying build/lib/atlas_densities/app/cell_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-04-18T13:29:05,177 copying build/lib/atlas_densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2024-04-18T13:29:05,178 running install_egg_info 2024-04-18T13:29:05,208 Copying atlas_densities.egg-info to build/bdist.linux-armv7l/wheel/atlas_densities-0.2.4-py3.11.egg-info 2024-04-18T13:29:05,221 running install_scripts 2024-04-18T13:29:05,243 creating build/bdist.linux-armv7l/wheel/atlas_densities-0.2.4.dist-info/WHEEL 2024-04-18T13:29:05,245 creating '/tmp/pip-wheel-u5poiga1/atlas_densities-0.2.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-18T13:29:05,248 adding 'atlas_densities/__init__.py' 2024-04-18T13:29:05,250 adding 'atlas_densities/exceptions.py' 2024-04-18T13:29:05,252 adding 'atlas_densities/utils.py' 2024-04-18T13:29:05,254 adding 'atlas_densities/version.py' 2024-04-18T13:29:05,256 adding 'atlas_densities/app/__init__.py' 2024-04-18T13:29:05,262 adding 'atlas_densities/app/cell_densities.py' 2024-04-18T13:29:05,264 adding 'atlas_densities/app/cli.py' 2024-04-18T13:29:05,266 adding 'atlas_densities/app/combination.py' 2024-04-18T13:29:05,269 adding 'atlas_densities/app/mtype_densities.py' 2024-04-18T13:29:05,271 adding 'atlas_densities/app/utils.py' 2024-04-18T13:29:05,300 adding 'atlas_densities/app/data/1.json' 2024-04-18T13:29:05,306 adding 'atlas_densities/app/data/__init__.py' 2024-04-18T13:29:05,308 adding 'atlas_densities/app/data/markers/README.rst' 2024-04-18T13:29:05,310 adding 'atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml' 2024-04-18T13:29:05,312 adding 'atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml' 2024-04-18T13:29:05,314 adding 'atlas_densities/app/data/markers/realigned_slices_bbp.json' 2024-04-18T13:29:05,316 adding 'atlas_densities/app/data/markers/realigned_slices_ccfv2.json' 2024-04-18T13:29:05,319 adding 'atlas_densities/app/data/measurements/README.rst' 2024-04-18T13:29:05,328 adding 'atlas_densities/app/data/measurements/gaba_papers.xlsx' 2024-04-18T13:29:05,331 adding 'atlas_densities/app/data/measurements/homogenous_regions.csv' 2024-04-18T13:29:05,392 adding 'atlas_densities/app/data/measurements/measurements.csv' 2024-04-18T13:29:05,449 adding 'atlas_densities/app/data/measurements/mmc1.xlsx' 2024-04-18T13:29:05,487 adding 'atlas_densities/app/data/measurements/mmc3.xlsx' 2024-04-18T13:29:05,491 adding 'atlas_densities/app/data/measurements/non_density_measurements.csv' 2024-04-18T13:29:05,505 adding 'atlas_densities/app/data/measurements/std_cells.json' 2024-04-18T13:29:05,509 adding 'atlas_densities/app/data/metadata/README.txt' 2024-04-18T13:29:05,510 adding 'atlas_densities/app/data/metadata/ca1_metadata.json' 2024-04-18T13:29:05,512 adding 'atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json' 2024-04-18T13:29:05,514 adding 'atlas_densities/app/data/metadata/group_ids.json' 2024-04-18T13:29:05,515 adding 'atlas_densities/app/data/metadata/isocortex_23_metadata.json' 2024-04-18T13:29:05,517 adding 'atlas_densities/app/data/metadata/isocortex_metadata.json' 2024-04-18T13:29:05,518 adding 'atlas_densities/app/data/metadata/metadata.json' 2024-04-18T13:29:05,520 adding 'atlas_densities/app/data/metadata/thalamus_metadata.json' 2024-04-18T13:29:05,522 adding 'atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv' 2024-04-18T13:29:05,523 adding 'atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml' 2024-04-18T13:29:05,525 adding 'atlas_densities/app/data/mtypes/composition/README.rst' 2024-04-18T13:29:05,527 adding 'atlas_densities/app/data/mtypes/composition/composition.yaml' 2024-04-18T13:29:05,529 adding 'atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv' 2024-04-18T13:29:05,531 adding 'atlas_densities/app/data/mtypes/density_profiles/README.rst' 2024-04-18T13:29:05,532 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv' 2024-04-18T13:29:05,533 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv' 2024-04-18T13:29:05,536 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat' 2024-04-18T13:29:05,537 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat' 2024-04-18T13:29:05,538 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat' 2024-04-18T13:29:05,539 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat' 2024-04-18T13:29:05,540 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat' 2024-04-18T13:29:05,541 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat' 2024-04-18T13:29:05,543 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat' 2024-04-18T13:29:05,544 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat' 2024-04-18T13:29:05,545 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat' 2024-04-18T13:29:05,546 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat' 2024-04-18T13:29:05,547 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat' 2024-04-18T13:29:05,548 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat' 2024-04-18T13:29:05,549 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat' 2024-04-18T13:29:05,551 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat' 2024-04-18T13:29:05,552 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat' 2024-04-18T13:29:05,553 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat' 2024-04-18T13:29:05,554 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat' 2024-04-18T13:29:05,556 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat' 2024-04-18T13:29:05,557 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat' 2024-04-18T13:29:05,558 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat' 2024-04-18T13:29:05,559 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat' 2024-04-18T13:29:05,561 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat' 2024-04-18T13:29:05,562 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat' 2024-04-18T13:29:05,563 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat' 2024-04-18T13:29:05,564 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat' 2024-04-18T13:29:05,565 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat' 2024-04-18T13:29:05,566 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat' 2024-04-18T13:29:05,567 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat' 2024-04-18T13:29:05,569 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat' 2024-04-18T13:29:05,570 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat' 2024-04-18T13:29:05,571 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat' 2024-04-18T13:29:05,572 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat' 2024-04-18T13:29:05,573 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat' 2024-04-18T13:29:05,575 adding 'atlas_densities/app/data/mtypes/probability_map/README.rst' 2024-04-18T13:29:05,600 adding 'atlas_densities/app/data/mtypes/probability_map/probability_map.csv' 2024-04-18T13:29:05,607 adding 'atlas_densities/combination/__init__.py' 2024-04-18T13:29:05,608 adding 'atlas_densities/combination/annotations_combinator.py' 2024-04-18T13:29:05,610 adding 'atlas_densities/combination/markers_combinator.py' 2024-04-18T13:29:05,612 adding 'atlas_densities/densities/__init__.py' 2024-04-18T13:29:05,614 adding 'atlas_densities/densities/cell_counts.py' 2024-04-18T13:29:05,615 adding 'atlas_densities/densities/cell_density.py' 2024-04-18T13:29:05,619 adding 'atlas_densities/densities/excel_reader.py' 2024-04-18T13:29:05,620 adding 'atlas_densities/densities/excitatory_inhibitory_splitting.py' 2024-04-18T13:29:05,624 adding 'atlas_densities/densities/fitting.py' 2024-04-18T13:29:05,626 adding 'atlas_densities/densities/glia_densities.py' 2024-04-18T13:29:05,628 adding 'atlas_densities/densities/inhibitory_neuron_densities_helper.py' 2024-04-18T13:29:05,632 adding 'atlas_densities/densities/inhibitory_neuron_densities_optimization.py' 2024-04-18T13:29:05,634 adding 'atlas_densities/densities/inhibitory_neuron_density.py' 2024-04-18T13:29:05,637 adding 'atlas_densities/densities/measurement_to_density.py' 2024-04-18T13:29:05,638 adding 'atlas_densities/densities/mtype_densities_from_composition.py' 2024-04-18T13:29:05,641 adding 'atlas_densities/densities/mtype_densities_from_profiles.py' 2024-04-18T13:29:05,644 adding 'atlas_densities/densities/refined_inhibitory_neuron_densities.py' 2024-04-18T13:29:05,647 adding 'atlas_densities/densities/utils.py' 2024-04-18T13:29:05,649 adding 'atlas_densities/densities/mtype_densities_from_map/__init__.py' 2024-04-18T13:29:05,651 adding 'atlas_densities/densities/mtype_densities_from_map/create.py' 2024-04-18T13:29:05,652 adding 'atlas_densities/densities/mtype_densities_from_map/utils.py' 2024-04-18T13:29:05,682 adding 'tests/1.json' 2024-04-18T13:29:05,687 adding 'tests/__init__.py' 2024-04-18T13:29:05,688 adding 'tests/markers_config.yaml' 2024-04-18T13:29:05,690 adding 'tests/mocking_tools.py' 2024-04-18T13:29:05,691 adding 'tests/test_utils.py' 2024-04-18T13:29:05,693 adding 'tests/utils.py' 2024-04-18T13:29:05,694 adding 'tests/app/__init__.py' 2024-04-18T13:29:05,696 adding 'tests/app/test_cell_densities.py' 2024-04-18T13:29:05,698 adding 'tests/app/test_combination.py' 2024-04-18T13:29:05,700 adding 'tests/app/test_mtype_densities.py' 2024-04-18T13:29:05,702 adding 'tests/app/test_refined_inhibitory_neuron_densities.py' 2024-04-18T13:29:05,703 adding 'tests/combination/__init__.py' 2024-04-18T13:29:05,705 adding 'tests/combination/test_annotations_combinator.py' 2024-04-18T13:29:05,706 adding 'tests/combination/test_markers_combinator.py' 2024-04-18T13:29:05,708 adding 'tests/densities/__init__.py' 2024-04-18T13:29:05,710 adding 'tests/densities/test_cell_counts.py' 2024-04-18T13:29:05,711 adding 'tests/densities/test_cell_density.py' 2024-04-18T13:29:05,713 adding 'tests/densities/test_excel_reader.py' 2024-04-18T13:29:05,715 adding 'tests/densities/test_excitatory_inhibitory_splitting.py' 2024-04-18T13:29:05,717 adding 'tests/densities/test_fitting.py' 2024-04-18T13:29:05,719 adding 'tests/densities/test_glia_densities.py' 2024-04-18T13:29:05,720 adding 'tests/densities/test_inhibitory_neuron_densities_helper.py' 2024-04-18T13:29:05,722 adding 'tests/densities/test_inhibitory_neuron_density.py' 2024-04-18T13:29:05,723 adding 'tests/densities/test_inhibitory_neuron_density_optimization.py' 2024-04-18T13:29:05,725 adding 'tests/densities/test_measurement_to_density.py' 2024-04-18T13:29:05,727 adding 'tests/densities/test_mtype_densities_from_composition.py' 2024-04-18T13:29:05,729 adding 'tests/densities/test_mtype_densities_from_map.py' 2024-04-18T13:29:05,730 adding 'tests/densities/test_mtype_densities_from_profiles.py' 2024-04-18T13:29:05,733 adding 'tests/densities/test_optimization_initialization.py' 2024-04-18T13:29:05,734 adding 'tests/densities/test_refined_inhibitory_neuron_density.py' 2024-04-18T13:29:05,736 adding 'tests/densities/test_utils.py' 2024-04-18T13:29:05,738 adding 'tests/densities/data/meta/layers.tsv' 2024-04-18T13:29:05,739 adding 'tests/densities/data/meta/mapping.tsv' 2024-04-18T13:29:05,740 adding 'tests/densities/data/meta/mapping_exc_only.tsv' 2024-04-18T13:29:05,742 adding 'tests/densities/data/mtypes/BP.dat' 2024-04-18T13:29:05,743 adding 'tests/densities/data/mtypes/L2_IPC.dat' 2024-04-18T13:29:05,744 adding 'tests/densities/data/mtypes/L2_TPC-A.dat' 2024-04-18T13:29:05,745 adding 'tests/densities/data/mtypes/L3_TPC-A.dat' 2024-04-18T13:29:05,746 adding 'tests/densities/data/mtypes/L3_TPC-B.dat' 2024-04-18T13:29:05,747 adding 'tests/densities/data/mtypes/mtype-taxonomy.tsv' 2024-04-18T13:29:05,748 adding 'atlas_densities-0.2.4.dist-info/AUTHORS.txt' 2024-04-18T13:29:05,750 adding 'atlas_densities-0.2.4.dist-info/LICENSE.txt' 2024-04-18T13:29:05,753 adding 'atlas_densities-0.2.4.dist-info/METADATA' 2024-04-18T13:29:05,754 adding 'atlas_densities-0.2.4.dist-info/WHEEL' 2024-04-18T13:29:05,755 adding 'atlas_densities-0.2.4.dist-info/entry_points.txt' 2024-04-18T13:29:05,756 adding 'atlas_densities-0.2.4.dist-info/top_level.txt' 2024-04-18T13:29:05,758 adding 'atlas_densities-0.2.4.dist-info/RECORD' 2024-04-18T13:29:05,773 removing build/bdist.linux-armv7l/wheel 2024-04-18T13:29:05,928 Building wheel for atlas-densities (setup.py): finished with status 'done' 2024-04-18T13:29:05,941 Created wheel for atlas-densities: filename=atlas_densities-0.2.4-py3-none-any.whl size=1074123 sha256=933b5e71dd470df8321b0a6c40150393e042b958bd61b12707c5f37413232d52 2024-04-18T13:29:05,942 Stored in directory: /tmp/pip-ephem-wheel-cache-i0juvav0/wheels/92/cc/1b/1d6bc665247a4ad686dacbd90afe225c2725192d1ea1e1a03c 2024-04-18T13:29:05,961 Successfully built atlas-densities 2024-04-18T13:29:05,992 Removed build tracker: '/tmp/pip-build-tracker-i0mvzbr5'