2024-04-18T19:05:05,114 Created temporary directory: /tmp/pip-build-tracker-lc389rl6 2024-04-18T19:05:05,115 Initialized build tracking at /tmp/pip-build-tracker-lc389rl6 2024-04-18T19:05:05,115 Created build tracker: /tmp/pip-build-tracker-lc389rl6 2024-04-18T19:05:05,116 Entered build tracker: /tmp/pip-build-tracker-lc389rl6 2024-04-18T19:05:05,116 Created temporary directory: /tmp/pip-wheel-34615exf 2024-04-18T19:05:05,121 Created temporary directory: /tmp/pip-ephem-wheel-cache-xj80hmre 2024-04-18T19:05:05,144 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-18T19:05:05,148 2 location(s) to search for versions of pyjess: 2024-04-18T19:05:05,148 * https://pypi.org/simple/pyjess/ 2024-04-18T19:05:05,148 * https://www.piwheels.org/simple/pyjess/ 2024-04-18T19:05:05,149 Fetching project page and analyzing links: https://pypi.org/simple/pyjess/ 2024-04-18T19:05:05,149 Getting page https://pypi.org/simple/pyjess/ 2024-04-18T19:05:05,151 Found index url https://pypi.org/simple/ 2024-04-18T19:05:05,244 Fetched page https://pypi.org/simple/pyjess/ as application/vnd.pypi.simple.v1+json 2024-04-18T19:05:05,258 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/f7/30/5e78014d6334257c5769c3404317240f3b33109c3bf0763e2c6846a636af/pyjess-0.1.0-cp310-cp310-macosx_10_12_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,258 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/4b/a1/ae3808dd9d957f1c67d915fb46ca8979c5387cb7528b1f31c2d4b53de9a5/pyjess-0.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,259 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/9b/8d/15b77c22301389b8b8dcf96ce0ac0f9b0ca9b664bd0426da4bca35a11929/pyjess-0.1.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,259 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/b9/ab/fb9fa464e8d1352a4b11eab0c426a4a33e79f0cb2a7eaa78a052dfa49af5/pyjess-0.1.0-cp311-cp311-macosx_10_12_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,259 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/c8/6b/e041f9e89157bcf9d01b0e39c12e88e7e6d50b096011e1481f135c71c33a/pyjess-0.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,259 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/5c/1d/3eb3effb9d0b17c5c59cd2b375279251172e95c7b3d6528ab0611b6d748f/pyjess-0.1.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,259 Skipping link: No binaries permitted for pyjess: 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https://files.pythonhosted.org/packages/c1/89/85a1236838afbfa612573d8138cb792d9775f1111eadd1fbfd36a8cf4af6/pyjess-0.1.0-cp38-cp38-macosx_10_12_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,261 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/f0/8b/c76fc7ce0c3e8d0b86267de24c422158f16f6137a3834bf091656af2fcbc/pyjess-0.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,262 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/73/65/4d6e670cd5a80a8b77b07b78f2a6bae303e0d622143c3e83d895d9520a1c/pyjess-0.1.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,262 Skipping link: No binaries permitted for pyjess: 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No binaries permitted for pyjess: https://files.pythonhosted.org/packages/29/81/37698e83c2dce41587a91b147bc30ce2f477a6be35f13a690cc12c071c65/pyjess-0.1.1-cp311-cp311-macosx_10_12_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,266 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/92/45/f7f8a1ed0ba5382f5585d48bf58526eeb8420f3ec2a3e881c73ec06bb0f9/pyjess-0.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,267 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/6b/88/136ee209f710392529318f9cc6c57ce82d3759a7b4aa561fadf907913b9a/pyjess-0.1.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,267 Skipping link: No binaries permitted for pyjess: 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https://files.pythonhosted.org/packages/14/17/c51b7908ea6c540710ff3554a9d2cf6f9ba59a421e1049766581c2f6dc8c/pyjess-0.1.1-pp310-pypy310_pp73-macosx_10_12_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,270 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/e5/5c/0acf017a6888816bfb09cbff43a1b7958144d721ea69adbdb239eb84e123/pyjess-0.1.1-pp310-pypy310_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,270 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/2e/67/d9c5498e6645ff54bd164635f0011471f510683ffef81fa11074088ac78d/pyjess-0.1.1-pp310-pypy310_pp73-win_amd64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,270 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/20/42/04e8408b1876c386fb382c20545f70cf79929fa0181ae1a0318f63268768/pyjess-0.1.1-pp37-pypy37_pp73-macosx_10_12_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,270 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/1d/1c/750d71c9293c5f5ff44f2a37d4ba4f407eac75fa3977f48523f44b3cee6b/pyjess-0.1.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,271 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/69/4b/f39bdd406041b8e1ccd153f2ba5083fbbe7fbd7787c8710153b0c737d853/pyjess-0.1.1-pp37-pypy37_pp73-win_amd64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,271 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/cd/32/482e8be3e8cd0320cf49ff701daf03f8d09fff90ec8914d6ee395d23bb60/pyjess-0.1.1-pp38-pypy38_pp73-macosx_10_12_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,271 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/e8/5a/53d9d88de9a38d59cbf4f665f8c6bd108c2c8786d22e6a534c272f41387b/pyjess-0.1.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,271 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/80/fc/98b2d9ec6dc47929b0002a847810be3e06db680e357181cabb175a6fa7f0/pyjess-0.1.1-pp38-pypy38_pp73-win_amd64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,271 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/65/86/2068c9aac9f4e2ff8c9c7788a61139fa60823d37a71b38f88c9169440a06/pyjess-0.1.1-pp39-pypy39_pp73-macosx_10_12_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,272 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/cf/bd/f012a5fc1ca0b925b0bfd51acad4001c23f58ceaccc335faeec65b76978f/pyjess-0.1.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,272 Skipping link: No binaries permitted for pyjess: https://files.pythonhosted.org/packages/df/44/b7f6606cd9703020b2f22e5a5f2640bfcdc2102360d9b5436064c1ddcef1/pyjess-0.1.1-pp39-pypy39_pp73-win_amd64.whl (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,272 Found link https://files.pythonhosted.org/packages/1d/d4/4374349932734d317397c78495ed2fce3616fde434956fe74efdb60d1442/pyjess-0.1.1.tar.gz (from https://pypi.org/simple/pyjess/) (requires-python:>=3.5), version: 0.1.1 2024-04-18T19:05:05,273 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyjess/ 2024-04-18T19:05:05,273 Getting page https://www.piwheels.org/simple/pyjess/ 2024-04-18T19:05:05,274 Found index url https://www.piwheels.org/simple/ 2024-04-18T19:05:05,468 Fetched page https://www.piwheels.org/simple/pyjess/ as text/html 2024-04-18T19:05:05,477 Skipping link: No binaries permitted for pyjess: https://www.piwheels.org/simple/pyjess/pyjess-0.1.1-cp311-cp311-linux_armv6l.whl#sha256=3fc5aa74ab276ac3738c745f60ca351065d23477ebb01382b3057633e0f7fe8b (from https://www.piwheels.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,477 Skipping link: No binaries permitted for pyjess: https://www.piwheels.org/simple/pyjess/pyjess-0.1.1-cp311-cp311-linux_armv7l.whl#sha256=3fc5aa74ab276ac3738c745f60ca351065d23477ebb01382b3057633e0f7fe8b (from https://www.piwheels.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,478 Skipping link: No binaries permitted for pyjess: https://www.piwheels.org/simple/pyjess/pyjess-0.1.1-cp37-cp37m-linux_armv6l.whl#sha256=a3ab7d921a87d94d18092c8fb3b4c53f50c4bb04e8e54727448408b2c09a7b89 (from https://www.piwheels.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,478 Skipping link: No binaries permitted for pyjess: https://www.piwheels.org/simple/pyjess/pyjess-0.1.1-cp37-cp37m-linux_armv7l.whl#sha256=a3ab7d921a87d94d18092c8fb3b4c53f50c4bb04e8e54727448408b2c09a7b89 (from https://www.piwheels.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,479 Skipping link: No binaries permitted for pyjess: https://www.piwheels.org/simple/pyjess/pyjess-0.1.0-cp311-cp311-linux_armv6l.whl#sha256=13f5fa70d82a5119953407d64045630eb94daa1235e792dacb3d24645a3d9927 (from https://www.piwheels.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,479 Skipping link: No binaries permitted for pyjess: https://www.piwheels.org/simple/pyjess/pyjess-0.1.0-cp311-cp311-linux_armv7l.whl#sha256=13f5fa70d82a5119953407d64045630eb94daa1235e792dacb3d24645a3d9927 (from https://www.piwheels.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,480 Skipping link: No binaries permitted for pyjess: https://www.piwheels.org/simple/pyjess/pyjess-0.1.0-cp37-cp37m-linux_armv6l.whl#sha256=2986707bf88e6fd7d09c9e0d646da94bc3c6c6ee931b1281e4a0efd94a2a614c (from https://www.piwheels.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,480 Skipping link: No binaries permitted for pyjess: https://www.piwheels.org/simple/pyjess/pyjess-0.1.0-cp37-cp37m-linux_armv7l.whl#sha256=2986707bf88e6fd7d09c9e0d646da94bc3c6c6ee931b1281e4a0efd94a2a614c (from https://www.piwheels.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,481 Skipping link: No binaries permitted for pyjess: https://www.piwheels.org/simple/pyjess/pyjess-0.1.0-cp39-cp39-linux_armv6l.whl#sha256=7b40916b8bd3ea61ed8dbb6a4618b9d67b3691d69e88bb9f633600b8d24a6e9c (from https://www.piwheels.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,481 Skipping link: No binaries permitted for pyjess: https://www.piwheels.org/simple/pyjess/pyjess-0.1.0-cp39-cp39-linux_armv7l.whl#sha256=7b40916b8bd3ea61ed8dbb6a4618b9d67b3691d69e88bb9f633600b8d24a6e9c (from https://www.piwheels.org/simple/pyjess/) (requires-python:>=3.5) 2024-04-18T19:05:05,482 Skipping link: not a file: https://www.piwheels.org/simple/pyjess/ 2024-04-18T19:05:05,482 Skipping link: not a file: https://pypi.org/simple/pyjess/ 2024-04-18T19:05:05,525 Given no hashes to check 1 links for project 'pyjess': discarding no candidates 2024-04-18T19:05:05,550 Collecting pyjess==0.1.1 2024-04-18T19:05:05,552 Created temporary directory: /tmp/pip-unpack-9ygmgx8p 2024-04-18T19:05:05,596 Downloading pyjess-0.1.1.tar.gz (210 kB) 2024-04-18T19:05:05,805 Added pyjess==0.1.1 from https://files.pythonhosted.org/packages/1d/d4/4374349932734d317397c78495ed2fce3616fde434956fe74efdb60d1442/pyjess-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-lc389rl6' 2024-04-18T19:05:05,809 Created temporary directory: /tmp/pip-build-env-jnpqwnk9 2024-04-18T19:05:05,819 Installing build dependencies: started 2024-04-18T19:05:05,820 Running command pip subprocess to install build dependencies 2024-04-18T19:05:06,965 Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2024-04-18T19:05:07,489 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-18T19:05:09,159 Collecting setuptools>=46.4 2024-04-18T19:05:09,175 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-04-18T19:05:10,553 Collecting cython~=3.0 2024-04-18T19:05:10,571 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp39-cp39-linux_armv7l.whl (10.7 MB) 2024-04-18T19:05:12,697 Installing collected packages: setuptools, cython 2024-04-18T19:05:18,326 Creating /tmp/pip-build-env-jnpqwnk9/overlay/bin 2024-04-18T19:05:18,328 changing mode of /tmp/pip-build-env-jnpqwnk9/overlay/bin/cygdb to 755 2024-04-18T19:05:18,331 changing mode of /tmp/pip-build-env-jnpqwnk9/overlay/bin/cython to 755 2024-04-18T19:05:18,333 changing mode of /tmp/pip-build-env-jnpqwnk9/overlay/bin/cythonize to 755 2024-04-18T19:05:18,353 Successfully installed cython-3.0.10 setuptools-69.5.1 2024-04-18T19:05:18,911 Installing build dependencies: finished with status 'done' 2024-04-18T19:05:18,916 Getting requirements to build wheel: started 2024-04-18T19:05:18,917 Running command Getting requirements to build wheel 2024-04-18T19:05:19,898 Getting requirements to build wheel: finished with status 'done' 2024-04-18T19:05:19,912 Installing backend dependencies: started 2024-04-18T19:05:19,913 Running command pip subprocess to install backend dependencies 2024-04-18T19:05:21,137 Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2024-04-18T19:05:21,685 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-18T19:05:22,095 Collecting wheel 2024-04-18T19:05:22,111 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-18T19:05:23,595 Installing collected packages: wheel 2024-04-18T19:05:23,813 Creating /tmp/pip-build-env-jnpqwnk9/normal/bin 2024-04-18T19:05:23,815 changing mode of /tmp/pip-build-env-jnpqwnk9/normal/bin/wheel to 755 2024-04-18T19:05:23,827 Successfully installed wheel-0.43.0 2024-04-18T19:05:24,231 Installing backend dependencies: finished with status 'done' 2024-04-18T19:05:24,233 Created temporary directory: /tmp/pip-modern-metadata-srgujgzv 2024-04-18T19:05:24,236 Preparing metadata (pyproject.toml): started 2024-04-18T19:05:24,237 Running command Preparing metadata (pyproject.toml) 2024-04-18T19:05:25,122 running dist_info 2024-04-18T19:05:25,131 creating /tmp/pip-modern-metadata-srgujgzv/pyjess.egg-info 2024-04-18T19:05:25,135 writing /tmp/pip-modern-metadata-srgujgzv/pyjess.egg-info/PKG-INFO 2024-04-18T19:05:25,139 writing dependency_links to /tmp/pip-modern-metadata-srgujgzv/pyjess.egg-info/dependency_links.txt 2024-04-18T19:05:25,141 writing top-level names to /tmp/pip-modern-metadata-srgujgzv/pyjess.egg-info/top_level.txt 2024-04-18T19:05:25,142 writing manifest file '/tmp/pip-modern-metadata-srgujgzv/pyjess.egg-info/SOURCES.txt' 2024-04-18T19:05:25,169 reading manifest file '/tmp/pip-modern-metadata-srgujgzv/pyjess.egg-info/SOURCES.txt' 2024-04-18T19:05:25,171 reading manifest template 'MANIFEST.in' 2024-04-18T19:05:25,202 warning: no files found matching '*.pxi' under directory 'pyjess' 2024-04-18T19:05:25,215 warning: no files found matching '*.pxd' under directory 'pyjess' 2024-04-18T19:05:25,222 warning: no files found matching '*.h' under directory 'pyjess' 2024-04-18T19:05:25,240 warning: no files found matching 'LICENSE' under directory 'vendor/jess' 2024-04-18T19:05:25,245 warning: no files found matching 'AUTHORS' under directory 'vendor/jess' 2024-04-18T19:05:25,250 warning: no files found matching 'CHANGELOG' under directory 'vendor/jess' 2024-04-18T19:05:25,268 no previously-included directories found matching 'vendor/sword/vendor' 2024-04-18T19:05:25,288 warning: no files found matching '*.pxi' under directory 'pyjess' 2024-04-18T19:05:25,301 warning: no files found matching '*.pxd' under directory 'pyjess' 2024-04-18T19:05:25,307 warning: no files found matching '*.h' under directory 'pyjess' 2024-04-18T19:05:25,312 warning: no previously-included files matching '*.cpp' found under directory 'pyjess' 2024-04-18T19:05:25,313 warning: no previously-included files matching '*.html' found under directory 'pyjess' 2024-04-18T19:05:25,313 adding license file 'COPYING' 2024-04-18T19:05:25,317 writing manifest file '/tmp/pip-modern-metadata-srgujgzv/pyjess.egg-info/SOURCES.txt' 2024-04-18T19:05:25,318 creating '/tmp/pip-modern-metadata-srgujgzv/pyjess-0.1.1.dist-info' 2024-04-18T19:05:25,491 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-18T19:05:25,498 Source in /tmp/pip-wheel-34615exf/pyjess_ed34d8c5c79f44e58923201579af93ec has version 0.1.1, which satisfies requirement pyjess==0.1.1 from https://files.pythonhosted.org/packages/1d/d4/4374349932734d317397c78495ed2fce3616fde434956fe74efdb60d1442/pyjess-0.1.1.tar.gz 2024-04-18T19:05:25,499 Removed pyjess==0.1.1 from https://files.pythonhosted.org/packages/1d/d4/4374349932734d317397c78495ed2fce3616fde434956fe74efdb60d1442/pyjess-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-lc389rl6' 2024-04-18T19:05:25,505 Created temporary directory: /tmp/pip-unpack-b2bk3fjz 2024-04-18T19:05:25,506 Created temporary directory: /tmp/pip-unpack-8ltcb1su 2024-04-18T19:05:25,509 Building wheels for collected packages: pyjess 2024-04-18T19:05:25,513 Created temporary directory: /tmp/pip-wheel-sepzhkqi 2024-04-18T19:05:25,513 Destination directory: /tmp/pip-wheel-sepzhkqi 2024-04-18T19:05:25,515 Building wheel for pyjess (pyproject.toml): started 2024-04-18T19:05:25,516 Running command Building wheel for pyjess (pyproject.toml) 2024-04-18T19:05:26,434 running bdist_wheel 2024-04-18T19:05:26,464 running build 2024-04-18T19:05:26,465 running build_py 2024-04-18T19:05:26,473 creating build 2024-04-18T19:05:26,474 creating build/lib.linux-armv7l-cpython-39 2024-04-18T19:05:26,474 creating build/lib.linux-armv7l-cpython-39/pyjess 2024-04-18T19:05:26,475 copying pyjess/__init__.py -> build/lib.linux-armv7l-cpython-39/pyjess 2024-04-18T19:05:26,478 creating build/lib.linux-armv7l-cpython-39/pyjess/tests 2024-04-18T19:05:26,478 copying pyjess/tests/test_template_atom.py -> build/lib.linux-armv7l-cpython-39/pyjess/tests 2024-04-18T19:05:26,480 copying pyjess/tests/test_template.py -> build/lib.linux-armv7l-cpython-39/pyjess/tests 2024-04-18T19:05:26,482 copying pyjess/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/pyjess/tests 2024-04-18T19:05:26,483 copying pyjess/tests/test_jess.py -> build/lib.linux-armv7l-cpython-39/pyjess/tests 2024-04-18T19:05:26,485 copying pyjess/tests/utils.py -> build/lib.linux-armv7l-cpython-39/pyjess/tests 2024-04-18T19:05:26,487 copying pyjess/tests/test_atom.py -> build/lib.linux-armv7l-cpython-39/pyjess/tests 2024-04-18T19:05:26,489 copying pyjess/tests/test_molecule.py -> build/lib.linux-armv7l-cpython-39/pyjess/tests 2024-04-18T19:05:26,491 creating build/lib.linux-armv7l-cpython-39/pyjess/tests/data 2024-04-18T19:05:26,492 copying pyjess/tests/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pyjess/tests/data 2024-04-18T19:05:26,497 copying pyjess/_jess.pyi -> build/lib.linux-armv7l-cpython-39/pyjess 2024-04-18T19:05:26,499 copying pyjess/py.typed -> build/lib.linux-armv7l-cpython-39/pyjess 2024-04-18T19:05:26,501 copying pyjess/tests/data/1.3.3.tpl -> build/lib.linux-armv7l-cpython-39/pyjess/tests/data 2024-04-18T19:05:26,502 copying pyjess/tests/data/1AMY+1.3.3.txt -> build/lib.linux-armv7l-cpython-39/pyjess/tests/data 2024-04-18T19:05:26,507 copying pyjess/tests/data/1AMY.pdb -> build/lib.linux-armv7l-cpython-39/pyjess/tests/data 2024-04-18T19:05:26,514 copying pyjess/tests/data/template_01.qry -> build/lib.linux-armv7l-cpython-39/pyjess/tests/data 2024-04-18T19:05:26,516 copying pyjess/tests/data/pdb1lnb.pdb -> build/lib.linux-armv7l-cpython-39/pyjess/tests/data 2024-04-18T19:05:26,524 copying pyjess/tests/data/template_02.qry -> build/lib.linux-armv7l-cpython-39/pyjess/tests/data 2024-04-18T19:05:26,527 running build_clib 2024-04-18T19:05:26,535 creating build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,536 generating build/temp.linux-armv7l-cpython-39/libjess.a from vendor/jess/src/Annulus.c, vendor/jess/src/Atom.c, vendor/jess/src/Jess.c, vendor/jess/src/Join.c, vendor/jess/src/KdTree.c, vendor/jess/src/Molecule.c, vendor/jess/src/Region.c, vendor/jess/src/Scanner.c, vendor/jess/src/Super.c, vendor/jess/src/TessAtom.c, vendor/jess/src/TessTemplate.c 2024-04-18T19:05:26,536 building jess with unix compiler 2024-04-18T19:05:26,537 generating build/temp.linux-armv7l-cpython-39/Annulus.h from vendor/jess/src/Annulus.h 2024-04-18T19:05:26,537 copying vendor/jess/src/Annulus.h -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,539 generating build/temp.linux-armv7l-cpython-39/Atom.h from vendor/jess/src/Atom.h 2024-04-18T19:05:26,540 patching vendor/jess/src/Atom.h with patches/Atom.h.patch 2024-04-18T19:05:26,542 generating build/temp.linux-armv7l-cpython-39/Jess.h from vendor/jess/src/Jess.h 2024-04-18T19:05:26,543 copying vendor/jess/src/Jess.h -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,545 generating build/temp.linux-armv7l-cpython-39/Join.h from vendor/jess/src/Join.h 2024-04-18T19:05:26,545 copying vendor/jess/src/Join.h -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,547 generating build/temp.linux-armv7l-cpython-39/KdTree.h from vendor/jess/src/KdTree.h 2024-04-18T19:05:26,548 copying vendor/jess/src/KdTree.h -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,550 generating build/temp.linux-armv7l-cpython-39/Molecule.h from vendor/jess/src/Molecule.h 2024-04-18T19:05:26,550 patching vendor/jess/src/Molecule.h with patches/Molecule.h.patch 2024-04-18T19:05:26,552 generating build/temp.linux-armv7l-cpython-39/Region.h from vendor/jess/src/Region.h 2024-04-18T19:05:26,553 copying vendor/jess/src/Region.h -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,554 generating build/temp.linux-armv7l-cpython-39/Scanner.h from vendor/jess/src/Scanner.h 2024-04-18T19:05:26,555 copying vendor/jess/src/Scanner.h -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,557 generating build/temp.linux-armv7l-cpython-39/Super.h from vendor/jess/src/Super.h 2024-04-18T19:05:26,558 copying vendor/jess/src/Super.h -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,559 generating build/temp.linux-armv7l-cpython-39/Template.h from vendor/jess/src/Template.h 2024-04-18T19:05:26,560 patching vendor/jess/src/Template.h with patches/Template.h.patch 2024-04-18T19:05:26,562 generating build/temp.linux-armv7l-cpython-39/TessAtom.h from vendor/jess/src/TessAtom.h 2024-04-18T19:05:26,562 patching vendor/jess/src/TessAtom.h with patches/TessAtom.h.patch 2024-04-18T19:05:26,565 generating build/temp.linux-armv7l-cpython-39/TessTemplate.h from vendor/jess/src/TessTemplate.h 2024-04-18T19:05:26,565 patching vendor/jess/src/TessTemplate.h with patches/TessTemplate.h.patch 2024-04-18T19:05:26,567 generating build/temp.linux-armv7l-cpython-39/Annulus.c from vendor/jess/src/Annulus.c 2024-04-18T19:05:26,568 copying vendor/jess/src/Annulus.c -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,570 generating build/temp.linux-armv7l-cpython-39/Atom.c from vendor/jess/src/Atom.c 2024-04-18T19:05:26,571 copying vendor/jess/src/Atom.c -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,573 generating build/temp.linux-armv7l-cpython-39/Jess.c from vendor/jess/src/Jess.c 2024-04-18T19:05:26,573 patching vendor/jess/src/Jess.c with patches/Jess.c.patch 2024-04-18T19:05:26,576 generating build/temp.linux-armv7l-cpython-39/Join.c from vendor/jess/src/Join.c 2024-04-18T19:05:26,577 copying vendor/jess/src/Join.c -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,579 generating build/temp.linux-armv7l-cpython-39/KdTree.c from vendor/jess/src/KdTree.c 2024-04-18T19:05:26,579 copying vendor/jess/src/KdTree.c -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,581 generating build/temp.linux-armv7l-cpython-39/Molecule.c from vendor/jess/src/Molecule.c 2024-04-18T19:05:26,582 patching vendor/jess/src/Molecule.c with patches/Molecule.c.patch 2024-04-18T19:05:26,584 generating build/temp.linux-armv7l-cpython-39/Region.c from vendor/jess/src/Region.c 2024-04-18T19:05:26,585 copying vendor/jess/src/Region.c -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,587 generating build/temp.linux-armv7l-cpython-39/Scanner.c from vendor/jess/src/Scanner.c 2024-04-18T19:05:26,587 copying vendor/jess/src/Scanner.c -> build/temp.linux-armv7l-cpython-39 2024-04-18T19:05:26,590 generating build/temp.linux-armv7l-cpython-39/Super.c from vendor/jess/src/Super.c 2024-04-18T19:05:26,590 patching vendor/jess/src/Super.c with patches/Super.c.patch 2024-04-18T19:05:26,593 generating build/temp.linux-armv7l-cpython-39/TessAtom.c from vendor/jess/src/TessAtom.c 2024-04-18T19:05:26,594 patching vendor/jess/src/TessAtom.c with patches/TessAtom.c.patch 2024-04-18T19:05:26,597 generating build/temp.linux-armv7l-cpython-39/TessTemplate.c from vendor/jess/src/TessTemplate.c 2024-04-18T19:05:26,597 patching vendor/jess/src/TessTemplate.c with patches/TessTemplate.c.patch 2024-04-18T19:05:26,610 generating build/temp.linux-armv7l-cpython-39/Annulus.o from build/temp.linux-armv7l-cpython-39/Annulus.c 2024-04-18T19:05:26,611 generating build/temp.linux-armv7l-cpython-39/Atom.o from build/temp.linux-armv7l-cpython-39/Atom.c 2024-04-18T19:05:26,612 generating build/temp.linux-armv7l-cpython-39/Jess.o from build/temp.linux-armv7l-cpython-39/Jess.c 2024-04-18T19:05:26,613 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/jess -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Annulus.c -o build/temp.linux-armv7l-cpython-39/Annulus.o 2024-04-18T19:05:26,613 generating build/temp.linux-armv7l-cpython-39/Join.o from build/temp.linux-armv7l-cpython-39/Join.c 2024-04-18T19:05:26,613 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/jess -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Atom.c -o build/temp.linux-armv7l-cpython-39/Atom.o 2024-04-18T19:05:26,614 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/jess -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Join.c -o build/temp.linux-armv7l-cpython-39/Join.o 2024-04-18T19:05:26,615 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/jess -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Jess.c -o build/temp.linux-armv7l-cpython-39/Jess.o 2024-04-18T19:05:26,757 build/temp.linux-armv7l-cpython-39/Annulus.c: In function ‘Annulus_ro’: 2024-04-18T19:05:26,758 build/temp.linux-armv7l-cpython-39/Annulus.c:66:12: warning: unused variable ‘t4’ [-Wunused-variable] 2024-04-18T19:05:26,758 66 | double t3,t4; 2024-04-18T19:05:26,759 | ^~ 2024-04-18T19:05:26,760 build/temp.linux-armv7l-cpython-39/Annulus.c:66:9: warning: unused variable ‘t3’ [-Wunused-variable] 2024-04-18T19:05:26,760 66 | double t3,t4; 2024-04-18T19:05:26,761 | ^~ 2024-04-18T19:05:26,767 build/temp.linux-armv7l-cpython-39/Jess.c: In function ‘JessQuery_next’: 2024-04-18T19:05:26,768 build/temp.linux-armv7l-cpython-39/Jess.c:180:12: warning: variable ‘T’ set but not used [-Wunused-but-set-variable] 2024-04-18T19:05:26,769 180 | Template *T; 2024-04-18T19:05:26,769 | ^ 2024-04-18T19:05:26,894 generating build/temp.linux-armv7l-cpython-39/KdTree.o from build/temp.linux-armv7l-cpython-39/KdTree.c 2024-04-18T19:05:26,895 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/jess -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/KdTree.c -o build/temp.linux-armv7l-cpython-39/KdTree.o 2024-04-18T19:05:26,903 generating build/temp.linux-armv7l-cpython-39/Molecule.o from build/temp.linux-armv7l-cpython-39/Molecule.c 2024-04-18T19:05:26,904 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/jess -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Molecule.c -o build/temp.linux-armv7l-cpython-39/Molecule.o 2024-04-18T19:05:26,916 generating build/temp.linux-armv7l-cpython-39/Region.o from build/temp.linux-armv7l-cpython-39/Region.c 2024-04-18T19:05:26,916 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/jess -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Region.c -o build/temp.linux-armv7l-cpython-39/Region.o 2024-04-18T19:05:26,929 generating build/temp.linux-armv7l-cpython-39/Scanner.o from build/temp.linux-armv7l-cpython-39/Scanner.c 2024-04-18T19:05:26,930 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/jess -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Scanner.c -o build/temp.linux-armv7l-cpython-39/Scanner.o 2024-04-18T19:05:27,035 build/temp.linux-armv7l-cpython-39/KdTree.c: In function ‘KdTree_create’: 2024-04-18T19:05:27,036 build/temp.linux-armv7l-cpython-39/KdTree.c:125:8: warning: unused variable ‘j’ [-Wunused-variable] 2024-04-18T19:05:27,036 125 | int i,j; 2024-04-18T19:05:27,036 | ^ 2024-04-18T19:05:27,037 build/temp.linux-armv7l-cpython-39/KdTree.c: In function ‘KdTree_free’: 2024-04-18T19:05:27,038 build/temp.linux-armv7l-cpython-39/KdTree.c:154:6: warning: unused variable ‘i’ [-Wunused-variable] 2024-04-18T19:05:27,038 154 | int i; 2024-04-18T19:05:27,039 | ^ 2024-04-18T19:05:27,039 build/temp.linux-armv7l-cpython-39/Scanner.c: In function ‘Scanner_create’: 2024-04-18T19:05:27,040 build/temp.linux-armv7l-cpython-39/Scanner.c:82:6: warning: unused variable ‘m’ [-Wunused-variable] 2024-04-18T19:05:27,040 82 | int m; 2024-04-18T19:05:27,040 | ^ 2024-04-18T19:05:27,049 At top level: 2024-04-18T19:05:27,049 build/temp.linux-armv7l-cpython-39/KdTree.c:108:12: warning: ‘imin’ defined but not used [-Wunused-function] 2024-04-18T19:05:27,050 108 | static int imin(int x, int y) 2024-04-18T19:05:27,050 | ^~~~ 2024-04-18T19:05:27,107 generating build/temp.linux-armv7l-cpython-39/Super.o from build/temp.linux-armv7l-cpython-39/Super.c 2024-04-18T19:05:27,108 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/jess -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Super.c -o build/temp.linux-armv7l-cpython-39/Super.o 2024-04-18T19:05:27,189 generating build/temp.linux-armv7l-cpython-39/TessAtom.o from build/temp.linux-armv7l-cpython-39/TessAtom.c 2024-04-18T19:05:27,190 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/jess -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/TessAtom.c -o build/temp.linux-armv7l-cpython-39/TessAtom.o 2024-04-18T19:05:27,242 build/temp.linux-armv7l-cpython-39/Super.c: In function ‘Superposition_compute’: 2024-04-18T19:05:27,242 build/temp.linux-armv7l-cpython-39/Super.c:146:13: warning: unused variable ‘tst’ [-Wunused-variable] 2024-04-18T19:05:27,243 146 | double tmp,tst; 2024-04-18T19:05:27,243 | ^~~ 2024-04-18T19:05:27,243 build/temp.linux-armv7l-cpython-39/Super.c:146:9: warning: unused variable ‘tmp’ [-Wunused-variable] 2024-04-18T19:05:27,244 146 | double tmp,tst; 2024-04-18T19:05:27,244 | ^~~ 2024-04-18T19:05:27,244 build/temp.linux-armv7l-cpython-39/Super.c:143:9: warning: unused variable ‘v’ [-Wunused-variable] 2024-04-18T19:05:27,244 143 | double v[3]; 2024-04-18T19:05:27,245 | ^ 2024-04-18T19:05:27,247 build/temp.linux-armv7l-cpython-39/Super.c: In function ‘superpose’: 2024-04-18T19:05:27,248 build/temp.linux-armv7l-cpython-39/Super.c:412:9: warning: unused variable ‘Q’ [-Wunused-variable] 2024-04-18T19:05:27,249 412 | double Q[9]; 2024-04-18T19:05:27,250 | ^ 2024-04-18T19:05:27,320 generating build/temp.linux-armv7l-cpython-39/TessTemplate.o from build/temp.linux-armv7l-cpython-39/TessTemplate.c 2024-04-18T19:05:27,320 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/jess -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/TessTemplate.c -o build/temp.linux-armv7l-cpython-39/TessTemplate.o 2024-04-18T19:05:27,353 build/temp.linux-armv7l-cpython-39/TessAtom.c: In function ‘TessAtom_create’: 2024-04-18T19:05:27,353 build/temp.linux-armv7l-cpython-39/TessAtom.c:152:3: warning: assignment to ‘char *’ from incompatible pointer type ‘TessAtom *’ {aka ‘struct _TessAtom *’} [-Wincompatible-pointer-types] 2024-04-18T19:05:27,353 152 | p=&A[1]; 2024-04-18T19:05:27,354 | ^ 2024-04-18T19:05:27,354 build/temp.linux-armv7l-cpython-39/TessAtom.c:153:9: warning: assignment to ‘char **’ from incompatible pointer type ‘char *’ [-Wincompatible-pointer-types] 2024-04-18T19:05:27,354 153 | A->name=p; 2024-04-18T19:05:27,354 | ^ 2024-04-18T19:05:27,354 build/temp.linux-armv7l-cpython-39/TessAtom.c:161:12: warning: assignment to ‘char **’ from incompatible pointer type ‘char *’ [-Wincompatible-pointer-types] 2024-04-18T19:05:27,355 161 | A->resName=p; 2024-04-18T19:05:27,355 | ^ 2024-04-18T19:05:27,355 build/temp.linux-armv7l-cpython-39/TessAtom.c: In function ‘TessAtom_copy’: 2024-04-18T19:05:27,355 build/temp.linux-armv7l-cpython-39/TessAtom.c:276:3: warning: assignment to ‘char *’ from incompatible pointer type ‘TessAtom *’ {aka ‘struct _TessAtom *’} [-Wincompatible-pointer-types] 2024-04-18T19:05:27,356 276 | p=&B[1]; 2024-04-18T19:05:27,356 | ^ 2024-04-18T19:05:27,356 build/temp.linux-armv7l-cpython-39/TessAtom.c:277:9: warning: assignment to ‘char **’ from incompatible pointer type ‘char *’ [-Wincompatible-pointer-types] 2024-04-18T19:05:27,356 277 | B->name=p; 2024-04-18T19:05:27,357 | ^ 2024-04-18T19:05:27,357 build/temp.linux-armv7l-cpython-39/TessAtom.c:285:12: warning: assignment to ‘char **’ from incompatible pointer type ‘char *’ [-Wincompatible-pointer-types] 2024-04-18T19:05:27,358 285 | B->resName=p; 2024-04-18T19:05:27,358 | ^ 2024-04-18T19:05:27,479 build/temp.linux-armv7l-cpython-39/TessTemplate.c: In function ‘TessTemplate_check’: 2024-04-18T19:05:27,479 build/temp.linux-armv7l-cpython-39/TessTemplate.c:85:16: warning: unused variable ‘f’ [-Wunused-variable] 2024-04-18T19:05:27,479 85 | int a,b,c,d,e,f; 2024-04-18T19:05:27,480 | ^ 2024-04-18T19:05:27,480 build/temp.linux-armv7l-cpython-39/TessTemplate.c:85:14: warning: unused variable ‘e’ [-Wunused-variable] 2024-04-18T19:05:27,480 85 | int a,b,c,d,e,f; 2024-04-18T19:05:27,480 | ^ 2024-04-18T19:05:27,501 build/temp.linux-armv7l-cpython-39/TessAtom.c: In function ‘TessAtom_create’: 2024-04-18T19:05:27,501 build/temp.linux-armv7l-cpython-39/TessAtom.c:172:2: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 4 [-Wstringop-truncation] 2024-04-18T19:05:27,501 172 | strncpy(A->name[0],a.name,4); 2024-04-18T19:05:27,502 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-18T19:05:27,502 build/temp.linux-armv7l-cpython-39/TessAtom.c:173:2: warning: ‘strncpy’ output may be truncated copying 3 bytes from a string of length 3 [-Wstringop-truncation] 2024-04-18T19:05:27,502 173 | strncpy(A->resName[0],a.resName,3); 2024-04-18T19:05:27,502 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-18T19:05:27,930 generating build/temp.linux-armv7l-cpython-39/libjess.a from build/temp.linux-armv7l-cpython-39/Annulus.o, build/temp.linux-armv7l-cpython-39/Atom.o, build/temp.linux-armv7l-cpython-39/Jess.o, build/temp.linux-armv7l-cpython-39/Join.o, build/temp.linux-armv7l-cpython-39/KdTree.o, build/temp.linux-armv7l-cpython-39/Molecule.o, build/temp.linux-armv7l-cpython-39/Region.o, build/temp.linux-armv7l-cpython-39/Scanner.o, build/temp.linux-armv7l-cpython-39/Super.o, build/temp.linux-armv7l-cpython-39/TessAtom.o, build/temp.linux-armv7l-cpython-39/TessTemplate.o 2024-04-18T19:05:27,930 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libjess.a build/temp.linux-armv7l-cpython-39/Annulus.o build/temp.linux-armv7l-cpython-39/Atom.o build/temp.linux-armv7l-cpython-39/Jess.o build/temp.linux-armv7l-cpython-39/Join.o build/temp.linux-armv7l-cpython-39/KdTree.o build/temp.linux-armv7l-cpython-39/Molecule.o build/temp.linux-armv7l-cpython-39/Region.o build/temp.linux-armv7l-cpython-39/Scanner.o build/temp.linux-armv7l-cpython-39/Super.o build/temp.linux-armv7l-cpython-39/TessAtom.o build/temp.linux-armv7l-cpython-39/TessTemplate.o 2024-04-18T19:05:27,961 running build_ext 2024-04-18T19:05:31,324 Compiling pyjess/_jess.pyx because it changed. 2024-04-18T19:05:31,325 [1/1] Cythonizing pyjess/_jess.pyx 2024-04-18T19:05:31,325 building pyjess._jess with unix compiler for platform linux-armv7l 2024-04-18T19:05:31,325 checking whether `PyInterpreterState_GetID` is available 2024-04-18T19:05:31,326 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-armv7l-cpython-39/have_getid.c -o build/temp.linux-armv7l-cpython-39/have_getid.o -Werror=implicit-function-declaration 2024-04-18T19:05:31,623 yes 2024-04-18T19:05:31,628 building 'pyjess._jess' extension 2024-04-18T19:05:31,629 creating build/temp.linux-armv7l-cpython-39/pyjess 2024-04-18T19:05:31,629 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DCYTHON_WITHOUT_ASSERTIONS=1 -DHAS_PYINTERPRETERSTATE_GETID=1 -Ipyjess -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -I/usr/include/python3.9 -c pyjess/_jess.c -o build/temp.linux-armv7l-cpython-39/pyjess/_jess.o 2024-04-18T19:05:32,031 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_8Molecule_10__len__’: 2024-04-18T19:05:32,035 pyjess/_jess.c:6547:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,035 6547 | int __pyx_t_1; 2024-04-18T19:05:32,035 | ^~~~~~~~~ 2024-04-18T19:05:32,042 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_8Molecule_14__sizeof__’: 2024-04-18T19:05:32,045 pyjess/_jess.c:6906:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,046 6906 | int __pyx_t_1; 2024-04-18T19:05:32,046 | ^~~~~~~~~ 2024-04-18T19:05:32,151 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_6serial___get__’: 2024-04-18T19:05:32,156 pyjess/_jess.c:10074:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,156 10074 | int __pyx_t_1; 2024-04-18T19:05:32,156 | ^~~~~~~~~ 2024-04-18T19:05:32,158 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_6altloc___get__’: 2024-04-18T19:05:32,163 pyjess/_jess.c:10164:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,163 10164 | int __pyx_t_1; 2024-04-18T19:05:32,163 | ^~~~~~~~~ 2024-04-18T19:05:32,166 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_4name___get__’: 2024-04-18T19:05:32,171 pyjess/_jess.c:10259:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,171 10259 | int __pyx_t_1; 2024-04-18T19:05:32,171 | ^~~~~~~~~ 2024-04-18T19:05:32,174 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_12residue_name___get__’: 2024-04-18T19:05:32,179 pyjess/_jess.c:10379:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,179 10379 | int __pyx_t_1; 2024-04-18T19:05:32,179 | ^~~~~~~~~ 2024-04-18T19:05:32,181 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_14residue_number___get__’: 2024-04-18T19:05:32,186 pyjess/_jess.c:10499:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,186 10499 | int __pyx_t_1; 2024-04-18T19:05:32,186 | ^~~~~~~~~ 2024-04-18T19:05:32,189 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_7segment___get__’: 2024-04-18T19:05:32,194 pyjess/_jess.c:10589:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,194 10589 | int __pyx_t_1; 2024-04-18T19:05:32,194 | ^~~~~~~~~ 2024-04-18T19:05:32,197 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_7element___get__’: 2024-04-18T19:05:32,202 pyjess/_jess.c:10709:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,202 10709 | int __pyx_t_1; 2024-04-18T19:05:32,202 | ^~~~~~~~~ 2024-04-18T19:05:32,204 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_14insertion_code___get__’: 2024-04-18T19:05:32,209 pyjess/_jess.c:10829:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,210 10829 | int __pyx_t_1; 2024-04-18T19:05:32,210 | ^~~~~~~~~ 2024-04-18T19:05:32,214 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_8chain_id___get__’: 2024-04-18T19:05:32,219 pyjess/_jess.c:10924:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,219 10924 | int __pyx_t_1; 2024-04-18T19:05:32,219 | ^~~~~~~~~ 2024-04-18T19:05:32,221 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_9occupancy___get__’: 2024-04-18T19:05:32,226 pyjess/_jess.c:11084:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,226 11084 | int __pyx_t_1; 2024-04-18T19:05:32,227 | ^~~~~~~~~ 2024-04-18T19:05:32,228 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_18temperature_factor___get__’: 2024-04-18T19:05:32,233 pyjess/_jess.c:11174:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,234 11174 | int __pyx_t_1; 2024-04-18T19:05:32,234 | ^~~~~~~~~ 2024-04-18T19:05:32,236 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_6charge___get__’: 2024-04-18T19:05:32,241 pyjess/_jess.c:11264:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,241 11264 | int __pyx_t_1; 2024-04-18T19:05:32,241 | ^~~~~~~~~ 2024-04-18T19:05:32,243 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_1x___get__’: 2024-04-18T19:05:32,248 pyjess/_jess.c:11354:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,249 11354 | int __pyx_t_1; 2024-04-18T19:05:32,249 | ^~~~~~~~~ 2024-04-18T19:05:32,250 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_1y___get__’: 2024-04-18T19:05:32,256 pyjess/_jess.c:11444:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,256 11444 | int __pyx_t_1; 2024-04-18T19:05:32,256 | ^~~~~~~~~ 2024-04-18T19:05:32,258 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_4Atom_1z___get__’: 2024-04-18T19:05:32,263 pyjess/_jess.c:11534:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,264 11534 | int __pyx_t_1; 2024-04-18T19:05:32,264 | ^~~~~~~~~ 2024-04-18T19:05:32,361 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_12TemplateAtom_10match_mode___get__’: 2024-04-18T19:05:32,368 pyjess/_jess.c:14262:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,369 14262 | int __pyx_t_1; 2024-04-18T19:05:32,369 | ^~~~~~~~~ 2024-04-18T19:05:32,370 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_12TemplateAtom_14residue_number___get__’: 2024-04-18T19:05:32,377 pyjess/_jess.c:14352:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,377 14352 | int __pyx_t_1; 2024-04-18T19:05:32,378 | ^~~~~~~~~ 2024-04-18T19:05:32,382 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_12TemplateAtom_8chain_id___get__’: 2024-04-18T19:05:32,389 pyjess/_jess.c:14444:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,389 14444 | int __pyx_t_1; 2024-04-18T19:05:32,389 | ^~~~~~~~~ 2024-04-18T19:05:32,391 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_12TemplateAtom_1x___get__’: 2024-04-18T19:05:32,398 pyjess/_jess.c:14624:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,398 14624 | int __pyx_t_1; 2024-04-18T19:05:32,398 | ^~~~~~~~~ 2024-04-18T19:05:32,400 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_12TemplateAtom_1y___get__’: 2024-04-18T19:05:32,407 pyjess/_jess.c:14714:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,407 14714 | int __pyx_t_1; 2024-04-18T19:05:32,407 | ^~~~~~~~~ 2024-04-18T19:05:32,409 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_12TemplateAtom_1z___get__’: 2024-04-18T19:05:32,416 pyjess/_jess.c:14804:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,416 14804 | int __pyx_t_1; 2024-04-18T19:05:32,416 | ^~~~~~~~~ 2024-04-18T19:05:32,420 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_12TemplateAtom_10atom_names___get__’: 2024-04-18T19:05:32,427 pyjess/_jess.c:14896:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,427 14896 | int __pyx_t_1; 2024-04-18T19:05:32,427 | ^~~~~~~~~ 2024-04-18T19:05:32,431 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_12TemplateAtom_13residue_names___get__’: 2024-04-18T19:05:32,438 pyjess/_jess.c:15067:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,438 15067 | int __pyx_t_1; 2024-04-18T19:05:32,438 | ^~~~~~~~~ 2024-04-18T19:05:32,440 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_12TemplateAtom_15distance_weight___get__’: 2024-04-18T19:05:32,447 pyjess/_jess.c:15236:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,448 15236 | int __pyx_t_1; 2024-04-18T19:05:32,448 | ^~~~~~~~~ 2024-04-18T19:05:32,502 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_8Template_10__len__’: 2024-04-18T19:05:32,510 pyjess/_jess.c:17331:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,510 17331 | int __pyx_t_1; 2024-04-18T19:05:32,511 | ^~~~~~~~~ 2024-04-18T19:05:32,520 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_8Template_14__sizeof__’: 2024-04-18T19:05:32,528 pyjess/_jess.c:17758:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-04-18T19:05:32,529 17758 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { 2024-04-18T19:05:32,529 | ^ 2024-04-18T19:05:32,540 pyjess/_jess.c:17695:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,540 17695 | int __pyx_t_1; 2024-04-18T19:05:32,541 | ^~~~~~~~~ 2024-04-18T19:05:32,544 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_8Template_9dimension___get__’: 2024-04-18T19:05:32,553 pyjess/_jess.c:18001:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,553 18001 | int __pyx_t_1; 2024-04-18T19:05:32,554 | ^~~~~~~~~ 2024-04-18T19:05:32,602 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_3Hit_11determinant___get__’: 2024-04-18T19:05:32,612 pyjess/_jess.c:19415:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,612 19415 | int __pyx_t_1; 2024-04-18T19:05:32,612 | ^~~~~~~~~ 2024-04-18T19:05:32,614 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_3Hit_10log_evalue___get__’: 2024-04-18T19:05:32,623 pyjess/_jess.c:19556:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,624 19556 | int __pyx_t_1; 2024-04-18T19:05:32,624 | ^~~~~~~~~ 2024-04-18T19:05:32,625 pyjess/_jess.c: In function ‘__pyx_pf_6pyjess_5_jess_3Hit_6evalue___get__’: 2024-04-18T19:05:32,635 pyjess/_jess.c:19657:7: warning: unused variable ‘__pyx_t_1’ [-Wunused-variable] 2024-04-18T19:05:32,635 19657 | int __pyx_t_1; 2024-04-18T19:05:32,635 | ^~~~~~~~~ 2024-04-18T19:05:32,641 pyjess/_jess.c: In function ‘__pyx_f_6pyjess_5_jess_3Hit_atoms’: 2024-04-18T19:05:32,651 pyjess/_jess.c:19765:7: warning: unused variable ‘__pyx_t_7’ [-Wunused-variable] 2024-04-18T19:05:32,651 19765 | int __pyx_t_7; 2024-04-18T19:05:32,651 | ^~~~~~~~~ 2024-04-18T19:06:04,312 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pyjess/_jess.o build/temp.linux-armv7l-cpython-39/libjess.a -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-39 -ljess -ljess -o build/lib.linux-armv7l-cpython-39/pyjess/_jess.cpython-39-arm-linux-gnueabihf.so 2024-04-18T19:06:04,536 installing to build/bdist.linux-armv7l/wheel 2024-04-18T19:06:04,537 running install 2024-04-18T19:06:04,563 running install_lib 2024-04-18T19:06:04,571 creating build/bdist.linux-armv7l 2024-04-18T19:06:04,571 creating build/bdist.linux-armv7l/wheel 2024-04-18T19:06:04,573 creating build/bdist.linux-armv7l/wheel/pyjess 2024-04-18T19:06:04,574 creating build/bdist.linux-armv7l/wheel/pyjess/tests 2024-04-18T19:06:04,576 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/test_template_atom.py -> build/bdist.linux-armv7l/wheel/pyjess/tests 2024-04-18T19:06:04,578 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/test_template.py -> build/bdist.linux-armv7l/wheel/pyjess/tests 2024-04-18T19:06:04,580 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/__init__.py -> build/bdist.linux-armv7l/wheel/pyjess/tests 2024-04-18T19:06:04,582 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/test_jess.py -> build/bdist.linux-armv7l/wheel/pyjess/tests 2024-04-18T19:06:04,584 creating build/bdist.linux-armv7l/wheel/pyjess/tests/data 2024-04-18T19:06:04,585 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/data/1.3.3.tpl -> build/bdist.linux-armv7l/wheel/pyjess/tests/data 2024-04-18T19:06:04,587 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/data/1AMY+1.3.3.txt -> build/bdist.linux-armv7l/wheel/pyjess/tests/data 2024-04-18T19:06:04,591 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/data/__init__.py -> build/bdist.linux-armv7l/wheel/pyjess/tests/data 2024-04-18T19:06:04,592 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/data/1AMY.pdb -> build/bdist.linux-armv7l/wheel/pyjess/tests/data 2024-04-18T19:06:04,600 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/data/template_01.qry -> build/bdist.linux-armv7l/wheel/pyjess/tests/data 2024-04-18T19:06:04,602 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/data/pdb1lnb.pdb -> build/bdist.linux-armv7l/wheel/pyjess/tests/data 2024-04-18T19:06:04,608 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/data/template_02.qry -> build/bdist.linux-armv7l/wheel/pyjess/tests/data 2024-04-18T19:06:04,610 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/utils.py -> build/bdist.linux-armv7l/wheel/pyjess/tests 2024-04-18T19:06:04,611 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/test_atom.py -> build/bdist.linux-armv7l/wheel/pyjess/tests 2024-04-18T19:06:04,613 copying build/lib.linux-armv7l-cpython-39/pyjess/tests/test_molecule.py -> build/bdist.linux-armv7l/wheel/pyjess/tests 2024-04-18T19:06:04,615 copying build/lib.linux-armv7l-cpython-39/pyjess/__init__.py -> build/bdist.linux-armv7l/wheel/pyjess 2024-04-18T19:06:04,617 copying build/lib.linux-armv7l-cpython-39/pyjess/py.typed -> build/bdist.linux-armv7l/wheel/pyjess 2024-04-18T19:06:04,618 copying build/lib.linux-armv7l-cpython-39/pyjess/_jess.pyi -> build/bdist.linux-armv7l/wheel/pyjess 2024-04-18T19:06:04,620 copying build/lib.linux-armv7l-cpython-39/pyjess/_jess.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pyjess 2024-04-18T19:06:04,645 running install_egg_info 2024-04-18T19:06:04,657 running egg_info 2024-04-18T19:06:04,662 writing pyjess.egg-info/PKG-INFO 2024-04-18T19:06:04,666 writing dependency_links to pyjess.egg-info/dependency_links.txt 2024-04-18T19:06:04,669 writing top-level names to pyjess.egg-info/top_level.txt 2024-04-18T19:06:04,685 reading manifest file 'pyjess.egg-info/SOURCES.txt' 2024-04-18T19:06:04,694 reading manifest template 'MANIFEST.in' 2024-04-18T19:06:04,726 warning: no files found matching '*.pxi' under directory 'pyjess' 2024-04-18T19:06:04,740 warning: no files found matching '*.pxd' under directory 'pyjess' 2024-04-18T19:06:04,748 warning: no files found matching '*.h' under directory 'pyjess' 2024-04-18T19:06:04,765 warning: no files found matching 'LICENSE' under directory 'vendor/jess' 2024-04-18T19:06:04,771 warning: no files found matching 'AUTHORS' under directory 'vendor/jess' 2024-04-18T19:06:04,776 warning: no files found matching 'CHANGELOG' under directory 'vendor/jess' 2024-04-18T19:06:04,796 no previously-included directories found matching 'vendor/sword/vendor' 2024-04-18T19:06:04,818 warning: no files found matching '*.pxi' under directory 'pyjess' 2024-04-18T19:06:04,832 warning: no files found matching '*.pxd' under directory 'pyjess' 2024-04-18T19:06:04,839 warning: no files found matching '*.h' under directory 'pyjess' 2024-04-18T19:06:04,845 warning: no previously-included files matching '*.cpp' found under directory 'pyjess' 2024-04-18T19:06:04,846 warning: no previously-included files matching '*.html' found under directory 'pyjess' 2024-04-18T19:06:04,846 adding license file 'COPYING' 2024-04-18T19:06:04,852 writing manifest file 'pyjess.egg-info/SOURCES.txt' 2024-04-18T19:06:04,854 Copying pyjess.egg-info to build/bdist.linux-armv7l/wheel/pyjess-0.1.1-py3.9.egg-info 2024-04-18T19:06:04,865 running install_scripts 2024-04-18T19:06:04,913 creating build/bdist.linux-armv7l/wheel/pyjess-0.1.1.dist-info/WHEEL 2024-04-18T19:06:04,916 creating '/tmp/pip-wheel-sepzhkqi/.tmp-q7sk9yp5/pyjess-0.1.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-18T19:06:04,918 adding 'pyjess/__init__.py' 2024-04-18T19:06:05,228 adding 'pyjess/_jess.cpython-39-arm-linux-gnueabihf.so' 2024-04-18T19:06:05,240 adding 'pyjess/_jess.pyi' 2024-04-18T19:06:05,241 adding 'pyjess/py.typed' 2024-04-18T19:06:05,243 adding 'pyjess/tests/__init__.py' 2024-04-18T19:06:05,245 adding 'pyjess/tests/test_atom.py' 2024-04-18T19:06:05,247 adding 'pyjess/tests/test_jess.py' 2024-04-18T19:06:05,248 adding 'pyjess/tests/test_molecule.py' 2024-04-18T19:06:05,250 adding 'pyjess/tests/test_template.py' 2024-04-18T19:06:05,251 adding 'pyjess/tests/test_template_atom.py' 2024-04-18T19:06:05,253 adding 'pyjess/tests/utils.py' 2024-04-18T19:06:05,255 adding 'pyjess/tests/data/1.3.3.tpl' 2024-04-18T19:06:05,267 adding 'pyjess/tests/data/1AMY+1.3.3.txt' 2024-04-18T19:06:05,321 adding 'pyjess/tests/data/1AMY.pdb' 2024-04-18T19:06:05,325 adding 'pyjess/tests/data/__init__.py' 2024-04-18T19:06:05,369 adding 'pyjess/tests/data/pdb1lnb.pdb' 2024-04-18T19:06:05,372 adding 'pyjess/tests/data/template_01.qry' 2024-04-18T19:06:05,374 adding 'pyjess/tests/data/template_02.qry' 2024-04-18T19:06:05,376 adding 'pyjess-0.1.1.dist-info/COPYING' 2024-04-18T19:06:05,378 adding 'pyjess-0.1.1.dist-info/METADATA' 2024-04-18T19:06:05,380 adding 'pyjess-0.1.1.dist-info/WHEEL' 2024-04-18T19:06:05,381 adding 'pyjess-0.1.1.dist-info/top_level.txt' 2024-04-18T19:06:05,382 adding 'pyjess-0.1.1.dist-info/RECORD' 2024-04-18T19:06:05,394 removing build/bdist.linux-armv7l/wheel 2024-04-18T19:06:05,684 Building wheel for pyjess (pyproject.toml): finished with status 'done' 2024-04-18T19:06:05,705 Created wheel for pyjess: filename=pyjess-0.1.1-cp39-cp39-linux_armv7l.whl size=739595 sha256=fad8b8d6b9fc0e97b8f4e3b3a415848eccd46d20e48c6f8115fb31d8a57c7feb 2024-04-18T19:06:05,706 Stored in directory: /tmp/pip-ephem-wheel-cache-xj80hmre/wheels/1d/b4/3a/764376c6933dbcdd115d4e364dd27d3010babf65edb4b3775f 2024-04-18T19:06:05,719 Successfully built pyjess 2024-04-18T19:06:05,741 Removed build tracker: '/tmp/pip-build-tracker-lc389rl6'