2024-04-19T13:38:58,804 Created temporary directory: /tmp/pip-build-tracker-znftg8qa
2024-04-19T13:38:58,806 Initialized build tracking at /tmp/pip-build-tracker-znftg8qa
2024-04-19T13:38:58,806 Created build tracker: /tmp/pip-build-tracker-znftg8qa
2024-04-19T13:38:58,806 Entered build tracker: /tmp/pip-build-tracker-znftg8qa
2024-04-19T13:38:58,807 Created temporary directory: /tmp/pip-wheel-8uy7da0i
2024-04-19T13:38:58,811 Created temporary directory: /tmp/pip-ephem-wheel-cache-fofh34iu
2024-04-19T13:38:58,844 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-04-19T13:38:58,849 2 location(s) to search for versions of moleculekit:
2024-04-19T13:38:58,849 * https://pypi.org/simple/moleculekit/
2024-04-19T13:38:58,849 * https://www.piwheels.org/simple/moleculekit/
2024-04-19T13:38:58,849 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-04-19T13:38:58,850 Getting page https://pypi.org/simple/moleculekit/
2024-04-19T13:38:58,852 Found index url https://pypi.org/simple/
2024-04-19T13:38:58,928 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-04-19T13:38:58,971   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,972   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-04-19T13:38:58,972   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,972   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-04-19T13:38:58,973   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,973   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-04-19T13:38:58,973   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,973   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-04-19T13:38:58,974   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,974   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-04-19T13:38:58,974   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,974   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-04-19T13:38:58,975   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,975   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-04-19T13:38:58,975   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,975   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-04-19T13:38:58,976   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,976   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-04-19T13:38:58,976   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,976   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-04-19T13:38:58,977   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,977   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-04-19T13:38:58,977   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,977   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-04-19T13:38:58,977   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,978   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-04-19T13:38:58,978   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,978   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-04-19T13:38:58,978   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,979   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-04-19T13:38:58,979   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,979   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-04-19T13:38:58,979   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,980   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-04-19T13:38:58,980   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,980   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-04-19T13:38:58,980   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,980   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-04-19T13:38:58,981   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,981   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-04-19T13:38:58,981   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,981   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-04-19T13:38:58,982   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,982   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-04-19T13:38:58,982   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,982   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-04-19T13:38:58,983   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,983   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-04-19T13:38:58,983   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,983   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-04-19T13:38:58,983   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,984   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-04-19T13:38:58,984   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,984   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-04-19T13:38:58,984   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,985   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-04-19T13:38:58,985   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,985   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-04-19T13:38:58,985   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,985   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-04-19T13:38:58,986   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,986   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-04-19T13:38:58,986   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,986   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-04-19T13:38:58,987   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,987   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2024-04-19T13:38:58,987   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,987   Found link https://files.pythonhosted.org/packages/13/f9/af3d7677c2eb61bb310ddad301ab47b9c1db2f923b0efad9ce605112aafb/moleculekit-0.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.1
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2024-04-19T13:38:58,988   Found link https://files.pythonhosted.org/packages/0d/3f/7743a3ec8c6ed58c5f0c12bf19654ba6275d473044861d9479ff346f8859/moleculekit-0.3.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.2
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2024-04-19T13:38:58,988   Found link https://files.pythonhosted.org/packages/a1/bf/2b3762bf7738dd1850a06eb6330cd8d17c49acaa272d43fc80c7c9c44a04/moleculekit-0.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.3
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2024-04-19T13:38:58,989   Found link https://files.pythonhosted.org/packages/7e/e0/d4abeaf42102abf8d132168518d29b8fec430608a3bb484a3254b63e9d37/moleculekit-0.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.4
2024-04-19T13:38:58,989   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/94/5a/b800d3737fc73a0197bf983ce179f8bedaa71a331029a733aefedc2a8a0c/moleculekit-0.3.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,989   Found link https://files.pythonhosted.org/packages/18/8a/a376ec94bd0c414528774a510846e3a34afec6356cda3d31d3a044a74a15/moleculekit-0.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.5
2024-04-19T13:38:58,989   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ee/c1/d073c238d26f3e4aaec53de003bc232d6758dbfd334f0f0af7aa2b50f941/moleculekit-0.3.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,990   Found link https://files.pythonhosted.org/packages/29/c4/2af9ce826d6a8d2327401dd1a05b3beff8e1f96911d0e334db20410975ee/moleculekit-0.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.7
2024-04-19T13:38:58,990   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e3/2d/da6853b8eb526f2a035e5996ae697422594832d9f890a66977981d46edec/moleculekit-0.3.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,990   Found link https://files.pythonhosted.org/packages/b0/8f/652d19d5bd69898632ed95d0a37095d2a1ed754d4147d20e1076d0b88e87/moleculekit-0.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.8
2024-04-19T13:38:58,990   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1f/d2/4da1254f5b07bedf974fdb9f19ab694a6cf553dc50ab700e3b09ec000031/moleculekit-0.3.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,991   Found link https://files.pythonhosted.org/packages/ac/14/2cef434c3bdc911ca4e7aabce48b50f869cf8f829f24958037f9dbb6521e/moleculekit-0.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.9
2024-04-19T13:38:58,991   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/18/d2/3565f29e52927e9cc0e9a6e77908f7bcd39bb25cc6a953ef326ebb0b920f/moleculekit-0.4.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,991   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
2024-04-19T13:38:58,991   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/45/48/d6f7e3ff07d4e04aced25dc1e28790e8d1d2aa95ccd0db0f0043e354f0de/moleculekit-0.4.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,991   Found link https://files.pythonhosted.org/packages/5c/8c/e37b37f907a6d009fbc458764ab561b9fe758cf0e0d349b7d19908820ab1/moleculekit-0.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.2
2024-04-19T13:38:58,992   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ed/8c/cf4a2f026f7b867bcc33cfac6c1fede5ee244c962112f0dc245fcac0939b/moleculekit-0.4.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,992   Found link https://files.pythonhosted.org/packages/40/e2/a9ce14fedc2bf7c9b1678a21e860878b5ea4f37b9820ef299ccc70634094/moleculekit-0.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.3
2024-04-19T13:38:58,992   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4b/f0/8b8df48948c27171f2db632801a49bd08f3f222d1c6e69abc9281962eb29/moleculekit-0.4.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,992   Found link https://files.pythonhosted.org/packages/a4/6d/cdf319e5cf1cbe68e02ce15c36001cf739b9ca932fcafa2bff354c581560/moleculekit-0.4.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.4
2024-04-19T13:38:58,993   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/26/45/55b970222953abfaff88d3ee5bbe64b544af8e686254b80f9dbcdc027754/moleculekit-0.4.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,993   Found link https://files.pythonhosted.org/packages/8f/22/90193aaf5014419463425cf48b2857ffb08d1a85df3af6407f370ea39358/moleculekit-0.4.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.6
2024-04-19T13:38:58,993   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/24/38/72e6ecc3ee5ad4463161bfbba8c4ee06716a2d393eee3dfcbecfc6566ad4/moleculekit-0.4.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,993   Found link https://files.pythonhosted.org/packages/eb/7f/e4e084eaf2a6e4af0d1ce91c0b210836fc244592155000f92383528d20e4/moleculekit-0.4.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.7
2024-04-19T13:38:58,994   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3f/a5/68b5af554f766d3dceef94275a75af28358200e0f741a86d38db878c60e1/moleculekit-0.4.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,994   Found link https://files.pythonhosted.org/packages/e1/2c/f4b752620b3f00be07e0f661bb3364e220e8b26bb0ce59e95aab7809b0a8/moleculekit-0.4.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.8
2024-04-19T13:38:58,994   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5c/75/2a9151eb7a9fbbd8b36c5283452449e596f081188d25c07f33a176783e8e/moleculekit-0.5.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,994   Found link https://files.pythonhosted.org/packages/31/e6/a052ad91265d7e72fcf32d9335d746bba3c06b23fc5a163960bd36e6dde6/moleculekit-0.5.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.2
2024-04-19T13:38:58,994   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/b0/15/bc106c1d99e2b235c80427b4d70f6392bf76a9fe17d2c8df562a03a79aaf/moleculekit-0.5.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,995   Found link https://files.pythonhosted.org/packages/16/e8/a60ecf23c91f1248aaeca4c5a3aacb14887fa3785e061ab5e225e06d7de3/moleculekit-0.5.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.3
2024-04-19T13:38:58,995   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/11/34/1eef198a596de2bbe11b5d156183d4e8853296cee4f6eccb1e93f1acfe6b/moleculekit-0.5.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,995   Found link https://files.pythonhosted.org/packages/b1/30/da12019468d39b9fc72b300f6bc0cbc4045ad8ccc1b8f25aa9fb7dced289/moleculekit-0.5.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.4
2024-04-19T13:38:58,995   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/c2/ae/6dcb36295ba009458f4ac17d3099f65f30ef7b52ee289ce857eaa09901e9/moleculekit-0.5.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,996   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5e/49/34aa32d017a3ff0c43e9743813fb882a1b2f4721a6429a14d3974d30b013/moleculekit-0.5.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,996   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3a/53/7ae8cc33411c0f5f83d245abfeabfd81ed123a3cfbf8a500ec4d96648275/moleculekit-0.5.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-04-19T13:38:58,996   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/13/6a/e73e6d343e35473a200e0744ab09efaa39adeebbbe191f752bc23d7a9b3a/moleculekit-0.5.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,996   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ee/29/022155d624fde59e89cecd4a7f95e2a183d3ec0a12251cf730661ae38179/moleculekit-0.6.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,997   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/65/8e/ec9922bc8930ae3a78e0a98af4fe053e8c359ccedceb54ced12bb1954815/moleculekit-0.6.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-04-19T13:38:58,997   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4e/11/e6c8a945d9e7bc12d1829930ad91a9ee548611b7c26387a5bb7bfc3f10f9/moleculekit-0.6.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-04-19T13:38:58,998   Found link https://files.pythonhosted.org/packages/17/1c/02715b1ba7af95549df42e637af515cc5f062c0a6fb8bdeca03404949043/moleculekit-0.7.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.7.0
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2024-04-19T13:38:59,004   Found link https://files.pythonhosted.org/packages/c7/e6/72a4be7c3db86704ca264e68de620327a6c292f01b2fb9a9a186e0909622/moleculekit-0.9.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.6
2024-04-19T13:38:59,004   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-04-19T13:38:59,004   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-04-19T13:38:59,005   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-04-19T13:38:59,005   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-04-19T13:38:59,005   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-04-19T13:38:59,005   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-04-19T13:38:59,006   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-04-19T13:38:59,006   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-04-19T13:38:59,006   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-04-19T13:38:59,006   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-04-19T13:38:59,007   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-04-19T13:38:59,007   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-04-19T13:38:59,007   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-04-19T13:38:59,007   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-04-19T13:38:59,008   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-04-19T13:38:59,008   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-04-19T13:38:59,008   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-04-19T13:38:59,009   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-04-19T13:38:59,009   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-04-19T13:38:59,009   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-04-19T13:38:59,009   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-04-19T13:38:59,010   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-04-19T13:38:59,010   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-04-19T13:38:59,010   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-04-19T13:38:59,010   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-04-19T13:38:59,011   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-04-19T13:38:59,011   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-04-19T13:38:59,011   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-04-19T13:38:59,011   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-04-19T13:38:59,012   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-04-19T13:38:59,012   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-04-19T13:38:59,012   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-04-19T13:38:59,013   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-04-19T13:38:59,013   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-04-19T13:38:59,013   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-04-19T13:38:59,013   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-04-19T13:38:59,014   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-04-19T13:38:59,014   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-04-19T13:38:59,014   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-04-19T13:38:59,014   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-04-19T13:38:59,015   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-04-19T13:38:59,015   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-04-19T13:38:59,015   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-04-19T13:38:59,016   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-04-19T13:38:59,016   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-04-19T13:38:59,016   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-04-19T13:38:59,016   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-04-19T13:38:59,017   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-04-19T13:38:59,018   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-04-19T13:38:59,018   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-04-19T13:38:59,019   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-04-19T13:38:59,019   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-04-19T13:38:59,020   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-04-19T13:38:59,020   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-04-19T13:38:59,021   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-04-19T13:38:59,021   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-04-19T13:38:59,022   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-04-19T13:38:59,023   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-04-19T13:38:59,023   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-04-19T13:38:59,024   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-04-19T13:38:59,024   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-04-19T13:38:59,025   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-04-19T13:38:59,025   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-04-19T13:38:59,026   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-04-19T13:38:59,026   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-04-19T13:38:59,027   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-04-19T13:38:59,028   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-04-19T13:38:59,028   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2024-04-19T13:38:59,029   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-04-19T13:38:59,029   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-04-19T13:38:59,030   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-04-19T13:38:59,030   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-04-19T13:38:59,031   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-04-19T13:38:59,031   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-04-19T13:38:59,032   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-04-19T13:38:59,033   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-04-19T13:38:59,033   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-04-19T13:38:59,034   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-04-19T13:38:59,034   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-04-19T13:38:59,035   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-04-19T13:38:59,035   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-04-19T13:38:59,036   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-04-19T13:38:59,036   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-04-19T13:38:59,037   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-04-19T13:38:59,037   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-04-19T13:38:59,038   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-04-19T13:38:59,039   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-04-19T13:38:59,039   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-04-19T13:38:59,040   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-04-19T13:38:59,040   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-04-19T13:38:59,041   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-04-19T13:38:59,041   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-04-19T13:38:59,042   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-04-19T13:38:59,043   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-04-19T13:38:59,043   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-04-19T13:38:59,044   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-04-19T13:38:59,044   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-04-19T13:38:59,045   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-04-19T13:38:59,045   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-04-19T13:38:59,046   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-04-19T13:38:59,047   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-04-19T13:38:59,047   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-04-19T13:38:59,048   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-04-19T13:38:59,048   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-04-19T13:38:59,049   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-04-19T13:38:59,049   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-04-19T13:38:59,050   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-04-19T13:38:59,050   Found link https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.31
2024-04-19T13:38:59,051 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-04-19T13:38:59,051 Getting page https://www.piwheels.org/simple/moleculekit/
2024-04-19T13:38:59,052 Found index url https://www.piwheels.org/simple/
2024-04-19T13:38:59,161 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-04-19T13:38:59,256   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp311-cp311-linux_armv6l.whl#sha256=218f8197ef61b4d204fdf063e6c7161b0c1cada6b9072a80ed32467b83651997 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,256   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp311-cp311-linux_armv7l.whl#sha256=218f8197ef61b4d204fdf063e6c7161b0c1cada6b9072a80ed32467b83651997 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,256   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp311-cp311-linux_armv6l.whl#sha256=ba84e1392124eb438846b78998fb0f26e8d9942c644dd5574f49d9eb9b0f6a87 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,256   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp311-cp311-linux_armv7l.whl#sha256=ba84e1392124eb438846b78998fb0f26e8d9942c644dd5574f49d9eb9b0f6a87 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,257   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp39-cp39-linux_armv6l.whl#sha256=44fb6340ac1ed849bf5c52a43b7b0334c3869777bcdec4444fc6ac0303a7d18b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,257   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp39-cp39-linux_armv7l.whl#sha256=44fb6340ac1ed849bf5c52a43b7b0334c3869777bcdec4444fc6ac0303a7d18b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,257   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv6l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,257   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv7l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,257   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv6l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,258   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv7l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,258   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv6l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,258   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv7l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,258   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp39-cp39-linux_armv6l.whl#sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,258   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp39-cp39-linux_armv7l.whl#sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,259   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv6l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,259   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv7l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,259   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp39-cp39-linux_armv6l.whl#sha256=383042586b9089491f7fb534cdbcab48294ebddbd0a60b4a87bd929a5a47d553 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,259   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp39-cp39-linux_armv7l.whl#sha256=383042586b9089491f7fb534cdbcab48294ebddbd0a60b4a87bd929a5a47d553 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,259   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv6l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-04-19T13:38:59,260   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv7l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-04-19T13:38:59,292   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv6l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,292   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv7l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,293   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv6l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,293   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,293   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv6l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,293   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv7l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,293   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,294   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,294   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,294   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,294   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,294   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,294   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,295   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,295   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,295   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,295   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,295   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,296   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,296   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,296   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,296   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,296   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,297   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,297   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,297   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,297   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,297   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
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2024-04-19T13:38:59,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
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2024-04-19T13:38:59,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
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2024-04-19T13:38:59,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,314   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,314   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,314   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
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2024-04-19T13:38:59,318   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
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2024-04-19T13:38:59,320   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
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2024-04-19T13:38:59,320   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-04-19T13:38:59,321 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-04-19T13:38:59,321 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-04-19T13:38:59,364 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-04-19T13:38:59,382 Collecting moleculekit==1.8.31
2024-04-19T13:38:59,384   Created temporary directory: /tmp/pip-unpack-et58aldz
2024-04-19T13:38:59,428   Downloading moleculekit-1.8.31.tar.gz (6.8 MB)
2024-04-19T13:39:01,691   Added moleculekit==1.8.31 from https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz to build tracker '/tmp/pip-build-tracker-znftg8qa'
2024-04-19T13:39:01,700   Created temporary directory: /tmp/pip-build-env-2wlektvw
2024-04-19T13:39:01,710   Installing build dependencies: started
2024-04-19T13:39:01,711   Running command pip subprocess to install build dependencies
2024-04-19T13:39:02,901   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-04-19T13:39:03,440   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-04-19T13:39:05,067   Collecting setuptools
2024-04-19T13:39:05,084     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB)
2024-04-19T13:39:06,224   Collecting numpy>=1.18.5
2024-04-19T13:39:06,275     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB)
2024-04-19T13:39:07,896   Collecting Cython>=0.29.21
2024-04-19T13:39:07,915     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-04-19T13:39:08,310   Collecting toml
2024-04-19T13:39:08,327     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-04-19T13:39:08,435   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-04-19T13:39:08,448     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-04-19T13:39:08,469        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 3.3 MB/s eta 0:00:00
2024-04-19T13:39:08,599   Collecting tomli (from versioneer[toml]==0.28)
2024-04-19T13:39:08,615     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-04-19T13:39:10,596   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-04-19T13:39:10,631     Creating /tmp/pip-build-env-2wlektvw/overlay/bin
2024-04-19T13:39:10,633     changing mode of /tmp/pip-build-env-2wlektvw/overlay/bin/versioneer to 755
2024-04-19T13:39:21,212     changing mode of /tmp/pip-build-env-2wlektvw/overlay/bin/f2py to 755
2024-04-19T13:39:24,656     changing mode of /tmp/pip-build-env-2wlektvw/overlay/bin/cygdb to 755
2024-04-19T13:39:24,658     changing mode of /tmp/pip-build-env-2wlektvw/overlay/bin/cython to 755
2024-04-19T13:39:24,660     changing mode of /tmp/pip-build-env-2wlektvw/overlay/bin/cythonize to 755
2024-04-19T13:39:24,685   Successfully installed Cython-3.0.10 numpy-1.26.4 setuptools-69.5.1 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2024-04-19T13:39:25,351   Installing build dependencies: finished with status 'done'
2024-04-19T13:39:25,356   Getting requirements to build wheel: started
2024-04-19T13:39:25,357   Running command Getting requirements to build wheel
2024-04-19T13:40:04,135   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-04-19T13:40:13,119   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-04-19T13:40:13,119   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-04-19T13:40:13,119   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-04-19T13:40:13,119   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-04-19T13:40:13,119   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-04-19T13:40:13,120   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-04-19T13:40:13,120   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-04-19T13:40:13,120   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-04-19T13:40:13,120   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-04-19T13:40:13,120   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-04-19T13:40:13,120   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-04-19T13:40:13,120   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-04-19T13:40:13,120   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-04-19T13:40:13,121   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-04-19T13:40:13,121   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-04-19T13:40:13,121   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-04-19T13:40:13,121   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-04-19T13:40:13,121   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-04-19T13:40:13,121   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-04-19T13:40:13,121   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-04-19T13:40:13,121   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-04-19T13:40:13,121   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-04-19T13:40:13,122   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-04-19T13:40:13,122   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-04-19T13:40:13,122   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-04-19T13:40:13,122   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-04-19T13:40:13,122   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-04-19T13:40:13,122   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-04-19T13:40:13,122   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-04-19T13:40:13,122   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-04-19T13:40:13,423   running egg_info
2024-04-19T13:40:13,429   writing moleculekit.egg-info/PKG-INFO
2024-04-19T13:40:13,433   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-04-19T13:40:13,436   writing requirements to moleculekit.egg-info/requires.txt
2024-04-19T13:40:13,437   writing top-level names to moleculekit.egg-info/top_level.txt
2024-04-19T13:40:13,469   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,469   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,470   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,470   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,471   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,471   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,471   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,472   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,472   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,472   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,473   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,473   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,473   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,474   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,474   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,474   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,475   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,475   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,475   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,476   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,476   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,476   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,477   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,477   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,477   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,478   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,478   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,478   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,479   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,479   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,479   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,480   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,480   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,480   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,481   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,481   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,481   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,482   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,482   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,482   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,483   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,483   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,483   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,484   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,484   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,484   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,485   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,485   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,485   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,486   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,486   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,486   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,487   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,487   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,487   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,488   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,489   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,489   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,489   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,490   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,492   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,492   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,492   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,493   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,493   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,494   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,495   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,495   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,495   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,496   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,497   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,497   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,498   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,498   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,498   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:13,510   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-04-19T13:40:13,545   reading manifest template 'MANIFEST.in'
2024-04-19T13:40:13,801   no previously-included directories found matching 'moleculekit/test-data'
2024-04-19T13:40:13,803   no previously-included directories found matching 'moleculekit/tests'
2024-04-19T13:40:13,804   no previously-included directories found matching 'package'
2024-04-19T13:40:13,804   adding license file 'LICENSE'
2024-04-19T13:40:13,824   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-04-19T13:40:15,208   Getting requirements to build wheel: finished with status 'done'
2024-04-19T13:40:15,224   Installing backend dependencies: started
2024-04-19T13:40:15,225   Running command pip subprocess to install backend dependencies
2024-04-19T13:40:16,480   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-04-19T13:40:17,062   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-04-19T13:40:17,441   Collecting wheel
2024-04-19T13:40:17,459     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-04-19T13:40:19,031   Installing collected packages: wheel
2024-04-19T13:40:19,262     Creating /tmp/pip-build-env-2wlektvw/normal/bin
2024-04-19T13:40:19,264     changing mode of /tmp/pip-build-env-2wlektvw/normal/bin/wheel to 755
2024-04-19T13:40:19,277   Successfully installed wheel-0.43.0
2024-04-19T13:40:19,678   Installing backend dependencies: finished with status 'done'
2024-04-19T13:40:19,680   Created temporary directory: /tmp/pip-modern-metadata-oeow4nif
2024-04-19T13:40:19,683   Preparing metadata (pyproject.toml): started
2024-04-19T13:40:19,684   Running command Preparing metadata (pyproject.toml)
2024-04-19T13:40:22,165   running dist_info
2024-04-19T13:40:22,166   creating /tmp/pip-modern-metadata-oeow4nif/moleculekit.egg-info
2024-04-19T13:40:22,173   writing /tmp/pip-modern-metadata-oeow4nif/moleculekit.egg-info/PKG-INFO
2024-04-19T13:40:22,177   writing dependency_links to /tmp/pip-modern-metadata-oeow4nif/moleculekit.egg-info/dependency_links.txt
2024-04-19T13:40:22,179   writing requirements to /tmp/pip-modern-metadata-oeow4nif/moleculekit.egg-info/requires.txt
2024-04-19T13:40:22,180   writing top-level names to /tmp/pip-modern-metadata-oeow4nif/moleculekit.egg-info/top_level.txt
2024-04-19T13:40:22,181   writing manifest file '/tmp/pip-modern-metadata-oeow4nif/moleculekit.egg-info/SOURCES.txt'
2024-04-19T13:40:22,212   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,213   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,213   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,213   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,213   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,213   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,213   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,214   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,214   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,214   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,214   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,214   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,214   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,214   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,214   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-04-19T13:40:22,215   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,215   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,215   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,215   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,215   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,215   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,216   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,216   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,216   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,216   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,216   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,216   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,216   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,217   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,217   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,217   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,217   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,217   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,217   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,217   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,217   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,218   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,218   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,218   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,218   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,218   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,218   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,218   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,218   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,219   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,219   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,219   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,219   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,219   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,219   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,219   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,219   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,220   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,220   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,220   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,220   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,220   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,220   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,222   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,222   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,222   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,222   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,222   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,223   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,223   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,223   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,223   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,223   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,224   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,224   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,224   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,225   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,225   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:22,232   reading manifest file '/tmp/pip-modern-metadata-oeow4nif/moleculekit.egg-info/SOURCES.txt'
2024-04-19T13:40:22,234   reading manifest template 'MANIFEST.in'
2024-04-19T13:40:22,496   no previously-included directories found matching 'moleculekit/test-data'
2024-04-19T13:40:22,497   no previously-included directories found matching 'moleculekit/tests'
2024-04-19T13:40:22,498   no previously-included directories found matching 'package'
2024-04-19T13:40:22,498   adding license file 'LICENSE'
2024-04-19T13:40:22,512   writing manifest file '/tmp/pip-modern-metadata-oeow4nif/moleculekit.egg-info/SOURCES.txt'
2024-04-19T13:40:22,521   creating '/tmp/pip-modern-metadata-oeow4nif/moleculekit-1.8.31.dist-info'
2024-04-19T13:40:22,724   Preparing metadata (pyproject.toml): finished with status 'done'
2024-04-19T13:40:22,731   Source in /tmp/pip-wheel-8uy7da0i/moleculekit_9e4db06d053c44eba1cf322007670544 has version 1.8.31, which satisfies requirement moleculekit==1.8.31 from https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz
2024-04-19T13:40:22,731   Removed moleculekit==1.8.31 from https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz from build tracker '/tmp/pip-build-tracker-znftg8qa'
2024-04-19T13:40:22,738 Created temporary directory: /tmp/pip-unpack-4ms4v_v1
2024-04-19T13:40:22,739 Created temporary directory: /tmp/pip-unpack-soffurql
2024-04-19T13:40:22,747 Building wheels for collected packages: moleculekit
2024-04-19T13:40:22,751   Created temporary directory: /tmp/pip-wheel-j5l6h4wf
2024-04-19T13:40:22,751   Destination directory: /tmp/pip-wheel-j5l6h4wf
2024-04-19T13:40:22,753   Building wheel for moleculekit (pyproject.toml): started
2024-04-19T13:40:22,754   Running command Building wheel for moleculekit (pyproject.toml)
2024-04-19T13:40:25,067   running bdist_wheel
2024-04-19T13:40:25,083   running build
2024-04-19T13:40:25,083   running build_py
2024-04-19T13:40:25,091   creating build
2024-04-19T13:40:25,091   creating build/lib.linux-armv7l-cpython-39
2024-04-19T13:40:25,092   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,093   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,095   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,098   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,100   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,102   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,105   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,109   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,111   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,113   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,115   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,117   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,119   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,121   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,122   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,127   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,129   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,131   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,133   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,134   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,136   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,138   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,140   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-04-19T13:40:25,141   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-04-19T13:40:25,143   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-04-19T13:40:25,145   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-04-19T13:40:25,147   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-04-19T13:40:25,148   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-04-19T13:40:25,151   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,151   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,154   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,157   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,159   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,161   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,163   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,165   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,167   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,170   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,171   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,174   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,176   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,177   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,179   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-04-19T13:40:25,183   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,184   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,187   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,189   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,191   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,193   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,195   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,197   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,200   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,202   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,204   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,206   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,208   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,211   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,213   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,214   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-04-19T13:40:25,218   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-04-19T13:40:25,218   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-04-19T13:40:25,220   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-04-19T13:40:25,223   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-04-19T13:40:25,224   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-04-19T13:40:25,227   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-04-19T13:40:25,229   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-04-19T13:40:25,230   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-04-19T13:40:25,233   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-04-19T13:40:25,233   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-04-19T13:40:25,238   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-04-19T13:40:25,239   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-04-19T13:40:25,242   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-04-19T13:40:25,243   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-04-19T13:40:25,246   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-04-19T13:40:25,248   copying moleculekit/smallmol/smallmolcdp.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-04-19T13:40:25,250   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-04-19T13:40:25,252   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-04-19T13:40:25,254   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-04-19T13:40:25,257   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-04-19T13:40:25,259   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-04-19T13:40:25,260   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-04-19T13:40:25,262   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-04-19T13:40:25,263   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-04-19T13:40:25,266   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-04-19T13:40:25,269   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-04-19T13:40:25,270   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-04-19T13:40:25,271   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-04-19T13:40:25,274   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-04-19T13:40:25,275   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-04-19T13:40:25,277   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-04-19T13:40:25,279   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-04-19T13:40:25,281   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-04-19T13:40:25,283   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-04-19T13:40:25,284   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-04-19T13:40:25,285   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-04-19T13:40:25,288   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-04-19T13:40:25,289   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-04-19T13:40:25,291   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-04-19T13:40:25,293   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-04-19T13:40:25,294   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-04-19T13:40:25,296   running egg_info
2024-04-19T13:40:25,301   writing moleculekit.egg-info/PKG-INFO
2024-04-19T13:40:25,304   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-04-19T13:40:25,306   writing requirements to moleculekit.egg-info/requires.txt
2024-04-19T13:40:25,307   writing top-level names to moleculekit.egg-info/top_level.txt
2024-04-19T13:40:25,325   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,326   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,326   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,326   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,326   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,326   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,326   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,327   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,327   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,327   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,327   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,327   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,327   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,327   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,328   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,328   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,328   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,328   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,328   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,328   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,328   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,328   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,329   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,329   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,329   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,329   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,329   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,329   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,329   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,329   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,330   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,330   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,330   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,330   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,330   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,330   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,330   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,330   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,331   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,331   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,331   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,331   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,331   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,331   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,331   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,332   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,332   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,332   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,332   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,332   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,332   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,332   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,332   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,332   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,333   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,333   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,333   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,333   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,333   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,333   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,337   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,337   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,337   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,338   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,338   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,338   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,338   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,339   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,339   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,339   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,340   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,340   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,340   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,340   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,340   dependency /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-04-19T13:40:25,346   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-04-19T13:40:25,356   reading manifest template 'MANIFEST.in'
2024-04-19T13:40:25,598   no previously-included directories found matching 'moleculekit/test-data'
2024-04-19T13:40:25,600   no previously-included directories found matching 'moleculekit/tests'
2024-04-19T13:40:25,601   no previously-included directories found matching 'package'
2024-04-19T13:40:25,601   adding license file 'LICENSE'
2024-04-19T13:40:25,619   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-04-19T13:40:25,630   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-04-19T13:40:25,630   !!

2024-04-19T13:40:25,630           ********************************************************************************
2024-04-19T13:40:25,630           ############################
2024-04-19T13:40:25,630           # Package would be ignored #
2024-04-19T13:40:25,630           ############################
2024-04-19T13:40:25,631           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-04-19T13:40:25,631           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,631           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,631           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-04-19T13:40:25,631           to the `packages` configuration field.

2024-04-19T13:40:25,631           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,631           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,632           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,632           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,632           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,632           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-04-19T13:40:25,632           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-04-19T13:40:25,633           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,633           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,633           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,633           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,633           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,634           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,634                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,634                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,634                 directory, all directories are treated like packages.
2024-04-19T13:40:25,634           ********************************************************************************

2024-04-19T13:40:25,634   !!
2024-04-19T13:40:25,634     check.warn(importable)
2024-04-19T13:40:25,635   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-04-19T13:40:25,635   !!

2024-04-19T13:40:25,635           ********************************************************************************
2024-04-19T13:40:25,635           ############################
2024-04-19T13:40:25,635           # Package would be ignored #
2024-04-19T13:40:25,635           ############################
2024-04-19T13:40:25,635           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-04-19T13:40:25,636           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,636           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,636           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-04-19T13:40:25,636           to the `packages` configuration field.

2024-04-19T13:40:25,636           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,636           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,637           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,637           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,637           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,637           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-04-19T13:40:25,637           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-04-19T13:40:25,637           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,638           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,638           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,638           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,638           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,638           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,639                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,639                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,639                 directory, all directories are treated like packages.
2024-04-19T13:40:25,639           ********************************************************************************

2024-04-19T13:40:25,639   !!
2024-04-19T13:40:25,639     check.warn(importable)
2024-04-19T13:40:25,639   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-04-19T13:40:25,639   !!

2024-04-19T13:40:25,640           ********************************************************************************
2024-04-19T13:40:25,640           ############################
2024-04-19T13:40:25,640           # Package would be ignored #
2024-04-19T13:40:25,640           ############################
2024-04-19T13:40:25,640           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-04-19T13:40:25,640           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,640           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,641           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-04-19T13:40:25,641           to the `packages` configuration field.

2024-04-19T13:40:25,641           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,641           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,641           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,641           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,642           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,642           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-04-19T13:40:25,642           already explicitly excluding 'moleculekit.cython_utils' via
2024-04-19T13:40:25,642           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,642           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,642           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,642           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,643           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,643           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,643                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,643                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,643                 directory, all directories are treated like packages.
2024-04-19T13:40:25,643           ********************************************************************************

2024-04-19T13:40:25,644   !!
2024-04-19T13:40:25,644     check.warn(importable)
2024-04-19T13:40:25,644   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-04-19T13:40:25,644   !!

2024-04-19T13:40:25,644           ********************************************************************************
2024-04-19T13:40:25,644           ############################
2024-04-19T13:40:25,644           # Package would be ignored #
2024-04-19T13:40:25,644           ############################
2024-04-19T13:40:25,645           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-04-19T13:40:25,645           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,645           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,645           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-04-19T13:40:25,645           to the `packages` configuration field.

2024-04-19T13:40:25,645           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,645           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,645           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,646           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,646           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,646           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-04-19T13:40:25,646           already explicitly excluding 'moleculekit.distance_utils' via
2024-04-19T13:40:25,646           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,646           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,647           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,647           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,647           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,647           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,647                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,647                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,648                 directory, all directories are treated like packages.
2024-04-19T13:40:25,648           ********************************************************************************

2024-04-19T13:40:25,648   !!
2024-04-19T13:40:25,648     check.warn(importable)
2024-04-19T13:40:25,648   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-04-19T13:40:25,648   !!

2024-04-19T13:40:25,648           ********************************************************************************
2024-04-19T13:40:25,649           ############################
2024-04-19T13:40:25,649           # Package would be ignored #
2024-04-19T13:40:25,649           ############################
2024-04-19T13:40:25,649           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-04-19T13:40:25,649           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,649           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,649           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-04-19T13:40:25,649           to the `packages` configuration field.

2024-04-19T13:40:25,650           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,650           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,650           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,650           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,650           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,650           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-04-19T13:40:25,651           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-04-19T13:40:25,651           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,651           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,651           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,651           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,651           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,652           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,652                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,652                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,652                 directory, all directories are treated like packages.
2024-04-19T13:40:25,652           ********************************************************************************

2024-04-19T13:40:25,652   !!
2024-04-19T13:40:25,652     check.warn(importable)
2024-04-19T13:40:25,653   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-04-19T13:40:25,653   !!

2024-04-19T13:40:25,653           ********************************************************************************
2024-04-19T13:40:25,653           ############################
2024-04-19T13:40:25,653           # Package would be ignored #
2024-04-19T13:40:25,653           ############################
2024-04-19T13:40:25,653           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-04-19T13:40:25,653           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,654           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,654           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-04-19T13:40:25,654           to the `packages` configuration field.

2024-04-19T13:40:25,654           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,654           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,654           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,655           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,655           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,655           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-04-19T13:40:25,655           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-04-19T13:40:25,655           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,655           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,655           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,656           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,656           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,656           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,656                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,656                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,657                 directory, all directories are treated like packages.
2024-04-19T13:40:25,657           ********************************************************************************

2024-04-19T13:40:25,657   !!
2024-04-19T13:40:25,657     check.warn(importable)
2024-04-19T13:40:25,657   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-04-19T13:40:25,657   !!

2024-04-19T13:40:25,657           ********************************************************************************
2024-04-19T13:40:25,658           ############################
2024-04-19T13:40:25,658           # Package would be ignored #
2024-04-19T13:40:25,658           ############################
2024-04-19T13:40:25,658           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-04-19T13:40:25,658           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,658           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,658           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-04-19T13:40:25,658           to the `packages` configuration field.

2024-04-19T13:40:25,659           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,659           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,659           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,659           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,659           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,659           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-04-19T13:40:25,660           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-04-19T13:40:25,660           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,660           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,660           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,660           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,660           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,661           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,661                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,661                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,661                 directory, all directories are treated like packages.
2024-04-19T13:40:25,661           ********************************************************************************

2024-04-19T13:40:25,661   !!
2024-04-19T13:40:25,661     check.warn(importable)
2024-04-19T13:40:25,662   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-04-19T13:40:25,662   !!

2024-04-19T13:40:25,662           ********************************************************************************
2024-04-19T13:40:25,662           ############################
2024-04-19T13:40:25,662           # Package would be ignored #
2024-04-19T13:40:25,662           ############################
2024-04-19T13:40:25,662           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-04-19T13:40:25,662           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,663           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,663           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-04-19T13:40:25,663           to the `packages` configuration field.

2024-04-19T13:40:25,663           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,663           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,663           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,663           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,664           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,664           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-04-19T13:40:25,664           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-04-19T13:40:25,664           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,664           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,664           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,665           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,665           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,665           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,665                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,665                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,665                 directory, all directories are treated like packages.
2024-04-19T13:40:25,665           ********************************************************************************

2024-04-19T13:40:25,666   !!
2024-04-19T13:40:25,666     check.warn(importable)
2024-04-19T13:40:25,666   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-04-19T13:40:25,666   !!

2024-04-19T13:40:25,666           ********************************************************************************
2024-04-19T13:40:25,666           ############################
2024-04-19T13:40:25,667           # Package would be ignored #
2024-04-19T13:40:25,667           ############################
2024-04-19T13:40:25,667           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-04-19T13:40:25,667           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,667           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,667           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-04-19T13:40:25,667           to the `packages` configuration field.

2024-04-19T13:40:25,667           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,668           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,668           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,668           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,668           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,668           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-04-19T13:40:25,669           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-04-19T13:40:25,669           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,669           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,669           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,669           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,669           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,670           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,670                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,670                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,670                 directory, all directories are treated like packages.
2024-04-19T13:40:25,670           ********************************************************************************

2024-04-19T13:40:25,670   !!
2024-04-19T13:40:25,671     check.warn(importable)
2024-04-19T13:40:25,671   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-04-19T13:40:25,671   !!

2024-04-19T13:40:25,671           ********************************************************************************
2024-04-19T13:40:25,671           ############################
2024-04-19T13:40:25,671           # Package would be ignored #
2024-04-19T13:40:25,671           ############################
2024-04-19T13:40:25,671           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-04-19T13:40:25,672           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,672           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,672           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-04-19T13:40:25,672           to the `packages` configuration field.

2024-04-19T13:40:25,672           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,672           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,672           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,673           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,673           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,673           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-04-19T13:40:25,673           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-04-19T13:40:25,673           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,673           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,673           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,674           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,674           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,674           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,674                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,674                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,675                 directory, all directories are treated like packages.
2024-04-19T13:40:25,675           ********************************************************************************

2024-04-19T13:40:25,675   !!
2024-04-19T13:40:25,675     check.warn(importable)
2024-04-19T13:40:25,675   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-04-19T13:40:25,675   !!

2024-04-19T13:40:25,675           ********************************************************************************
2024-04-19T13:40:25,676           ############################
2024-04-19T13:40:25,676           # Package would be ignored #
2024-04-19T13:40:25,676           ############################
2024-04-19T13:40:25,676           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-04-19T13:40:25,676           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,676           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,676           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-04-19T13:40:25,676           to the `packages` configuration field.

2024-04-19T13:40:25,677           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,677           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,677           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,677           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,677           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,677           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-04-19T13:40:25,678           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-04-19T13:40:25,678           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,678           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,678           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,678           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,678           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,679           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,679                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,679                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,679                 directory, all directories are treated like packages.
2024-04-19T13:40:25,679           ********************************************************************************

2024-04-19T13:40:25,679   !!
2024-04-19T13:40:25,679     check.warn(importable)
2024-04-19T13:40:25,680   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-04-19T13:40:25,680   !!

2024-04-19T13:40:25,680           ********************************************************************************
2024-04-19T13:40:25,680           ############################
2024-04-19T13:40:25,680           # Package would be ignored #
2024-04-19T13:40:25,680           ############################
2024-04-19T13:40:25,680           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-04-19T13:40:25,680           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,681           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,681           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-04-19T13:40:25,681           to the `packages` configuration field.

2024-04-19T13:40:25,681           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,681           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,681           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,681           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,682           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,682           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-04-19T13:40:25,682           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-04-19T13:40:25,682           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,682           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,682           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,683           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,683           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,683           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,683                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,683                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,683                 directory, all directories are treated like packages.
2024-04-19T13:40:25,684           ********************************************************************************

2024-04-19T13:40:25,684   !!
2024-04-19T13:40:25,684     check.warn(importable)
2024-04-19T13:40:25,684   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-04-19T13:40:25,684   !!

2024-04-19T13:40:25,684           ********************************************************************************
2024-04-19T13:40:25,684           ############################
2024-04-19T13:40:25,685           # Package would be ignored #
2024-04-19T13:40:25,685           ############################
2024-04-19T13:40:25,685           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-04-19T13:40:25,685           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,685           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,685           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-04-19T13:40:25,685           to the `packages` configuration field.

2024-04-19T13:40:25,685           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,686           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,686           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,686           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,686           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,686           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-04-19T13:40:25,687           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-04-19T13:40:25,687           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,687           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,687           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,687           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,688           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,688           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,688                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,688                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,688                 directory, all directories are treated like packages.
2024-04-19T13:40:25,688           ********************************************************************************

2024-04-19T13:40:25,689   !!
2024-04-19T13:40:25,689     check.warn(importable)
2024-04-19T13:40:25,689   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-04-19T13:40:25,689   !!

2024-04-19T13:40:25,689           ********************************************************************************
2024-04-19T13:40:25,689           ############################
2024-04-19T13:40:25,689           # Package would be ignored #
2024-04-19T13:40:25,690           ############################
2024-04-19T13:40:25,690           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-04-19T13:40:25,690           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,690           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,690           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-04-19T13:40:25,690           to the `packages` configuration field.

2024-04-19T13:40:25,691           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,691           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,691           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,691           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,691           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,692           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-04-19T13:40:25,692           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-04-19T13:40:25,692           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,692           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,692           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,692           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,693           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,693           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,693                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,693                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,693                 directory, all directories are treated like packages.
2024-04-19T13:40:25,693           ********************************************************************************

2024-04-19T13:40:25,694   !!
2024-04-19T13:40:25,694     check.warn(importable)
2024-04-19T13:40:25,694   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-04-19T13:40:25,694   !!

2024-04-19T13:40:25,694           ********************************************************************************
2024-04-19T13:40:25,694           ############################
2024-04-19T13:40:25,695           # Package would be ignored #
2024-04-19T13:40:25,695           ############################
2024-04-19T13:40:25,695           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-04-19T13:40:25,695           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,695           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,695           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-04-19T13:40:25,695           to the `packages` configuration field.

2024-04-19T13:40:25,696           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,696           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,696           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,696           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,697           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,697           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-04-19T13:40:25,697           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-04-19T13:40:25,697           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,697           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,697           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,698           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,698           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,698           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,698                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,698                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,698                 directory, all directories are treated like packages.
2024-04-19T13:40:25,699           ********************************************************************************

2024-04-19T13:40:25,699   !!
2024-04-19T13:40:25,699     check.warn(importable)
2024-04-19T13:40:25,699   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-04-19T13:40:25,699   !!

2024-04-19T13:40:25,699           ********************************************************************************
2024-04-19T13:40:25,700           ############################
2024-04-19T13:40:25,700           # Package would be ignored #
2024-04-19T13:40:25,700           ############################
2024-04-19T13:40:25,700           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-04-19T13:40:25,700           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,700           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,700           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-04-19T13:40:25,700           to the `packages` configuration field.

2024-04-19T13:40:25,701           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,701           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,701           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,701           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,701           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,702           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-04-19T13:40:25,702           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-04-19T13:40:25,702           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,702           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,702           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,702           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,703           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,703           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,703                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,703                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,703                 directory, all directories are treated like packages.
2024-04-19T13:40:25,703           ********************************************************************************

2024-04-19T13:40:25,704   !!
2024-04-19T13:40:25,704     check.warn(importable)
2024-04-19T13:40:25,704   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-04-19T13:40:25,704   !!

2024-04-19T13:40:25,704           ********************************************************************************
2024-04-19T13:40:25,704           ############################
2024-04-19T13:40:25,704           # Package would be ignored #
2024-04-19T13:40:25,705           ############################
2024-04-19T13:40:25,705           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-04-19T13:40:25,705           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,705           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,705           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-04-19T13:40:25,705           to the `packages` configuration field.

2024-04-19T13:40:25,706           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,706           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,706           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,706           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,707           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,707           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-04-19T13:40:25,707           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-04-19T13:40:25,707           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,707           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,707           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,708           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,708           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,708           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,709                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,709                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,709                 directory, all directories are treated like packages.
2024-04-19T13:40:25,709           ********************************************************************************

2024-04-19T13:40:25,709   !!
2024-04-19T13:40:25,709     check.warn(importable)
2024-04-19T13:40:25,710   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-04-19T13:40:25,710   !!

2024-04-19T13:40:25,710           ********************************************************************************
2024-04-19T13:40:25,710           ############################
2024-04-19T13:40:25,710           # Package would be ignored #
2024-04-19T13:40:25,710           ############################
2024-04-19T13:40:25,710           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-04-19T13:40:25,711           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,711           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,711           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-04-19T13:40:25,711           to the `packages` configuration field.

2024-04-19T13:40:25,711           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,712           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,712           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,712           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,712           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,713           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-04-19T13:40:25,713           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-04-19T13:40:25,713           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,713           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,713           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,713           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,714           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,714           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,714                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,714                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,714                 directory, all directories are treated like packages.
2024-04-19T13:40:25,715           ********************************************************************************

2024-04-19T13:40:25,715   !!
2024-04-19T13:40:25,715     check.warn(importable)
2024-04-19T13:40:25,715   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-04-19T13:40:25,715   !!

2024-04-19T13:40:25,715           ********************************************************************************
2024-04-19T13:40:25,716           ############################
2024-04-19T13:40:25,716           # Package would be ignored #
2024-04-19T13:40:25,716           ############################
2024-04-19T13:40:25,716           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-04-19T13:40:25,716           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,716           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,717           package, please make sure that 'moleculekit.share' is explicitly added
2024-04-19T13:40:25,717           to the `packages` configuration field.

2024-04-19T13:40:25,717           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,717           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,717           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,718           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,718           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,718           If you don't want 'moleculekit.share' to be distributed and are
2024-04-19T13:40:25,718           already explicitly excluding 'moleculekit.share' via
2024-04-19T13:40:25,718           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,719           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,719           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,719           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,719           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,720           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,720                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,720                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,720                 directory, all directories are treated like packages.
2024-04-19T13:40:25,720           ********************************************************************************

2024-04-19T13:40:25,720   !!
2024-04-19T13:40:25,720     check.warn(importable)
2024-04-19T13:40:25,721   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-04-19T13:40:25,721   !!

2024-04-19T13:40:25,721           ********************************************************************************
2024-04-19T13:40:25,721           ############################
2024-04-19T13:40:25,721           # Package would be ignored #
2024-04-19T13:40:25,721           ############################
2024-04-19T13:40:25,722           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-04-19T13:40:25,722           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,722           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,722           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-04-19T13:40:25,722           to the `packages` configuration field.

2024-04-19T13:40:25,723           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,723           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,723           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,723           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,723           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,724           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-04-19T13:40:25,724           already explicitly excluding 'moleculekit.share.atomselect' via
2024-04-19T13:40:25,724           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,724           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,724           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,724           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,725           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,725           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,725                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,725                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,726                 directory, all directories are treated like packages.
2024-04-19T13:40:25,726           ********************************************************************************

2024-04-19T13:40:25,726   !!
2024-04-19T13:40:25,726     check.warn(importable)
2024-04-19T13:40:25,727   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-04-19T13:40:25,728   !!

2024-04-19T13:40:25,728           ********************************************************************************
2024-04-19T13:40:25,728           ############################
2024-04-19T13:40:25,729           # Package would be ignored #
2024-04-19T13:40:25,729           ############################
2024-04-19T13:40:25,729           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-04-19T13:40:25,729           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,729           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,730           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-04-19T13:40:25,730           to the `packages` configuration field.

2024-04-19T13:40:25,730           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,730           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,730           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,730           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,731           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,731           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-04-19T13:40:25,731           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-04-19T13:40:25,731           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,731           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,731           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,732           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,732           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,732           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,732                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,732                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,732                 directory, all directories are treated like packages.
2024-04-19T13:40:25,733           ********************************************************************************

2024-04-19T13:40:25,733   !!
2024-04-19T13:40:25,733     check.warn(importable)
2024-04-19T13:40:25,733   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-04-19T13:40:25,733   !!

2024-04-19T13:40:25,733           ********************************************************************************
2024-04-19T13:40:25,734           ############################
2024-04-19T13:40:25,734           # Package would be ignored #
2024-04-19T13:40:25,734           ############################
2024-04-19T13:40:25,734           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-04-19T13:40:25,734           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,734           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,735           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-04-19T13:40:25,735           to the `packages` configuration field.

2024-04-19T13:40:25,735           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,735           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,735           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,735           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,736           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,736           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-04-19T13:40:25,736           already explicitly excluding 'moleculekit.tmalign' via
2024-04-19T13:40:25,736           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,736           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,736           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,737           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,737           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,737           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,737                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,738                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,738                 directory, all directories are treated like packages.
2024-04-19T13:40:25,738           ********************************************************************************

2024-04-19T13:40:25,738   !!
2024-04-19T13:40:25,738     check.warn(importable)
2024-04-19T13:40:25,738   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-04-19T13:40:25,738   !!

2024-04-19T13:40:25,739           ********************************************************************************
2024-04-19T13:40:25,739           ############################
2024-04-19T13:40:25,739           # Package would be ignored #
2024-04-19T13:40:25,739           ############################
2024-04-19T13:40:25,739           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-04-19T13:40:25,739           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,739           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,740           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-04-19T13:40:25,740           to the `packages` configuration field.

2024-04-19T13:40:25,740           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,740           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,740           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,740           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,741           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,741           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-04-19T13:40:25,741           already explicitly excluding 'moleculekit.tmalign.include' via
2024-04-19T13:40:25,741           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,741           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,741           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,742           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,742           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,743           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,744                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,745                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,745                 directory, all directories are treated like packages.
2024-04-19T13:40:25,748           ********************************************************************************

2024-04-19T13:40:25,752   !!
2024-04-19T13:40:25,753     check.warn(importable)
2024-04-19T13:40:25,754   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-04-19T13:40:25,754   !!

2024-04-19T13:40:25,754           ********************************************************************************
2024-04-19T13:40:25,754           ############################
2024-04-19T13:40:25,754           # Package would be ignored #
2024-04-19T13:40:25,755           ############################
2024-04-19T13:40:25,755           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-04-19T13:40:25,755           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,755           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,755           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-04-19T13:40:25,756           to the `packages` configuration field.

2024-04-19T13:40:25,756           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,756           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,756           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,756           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,757           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,757           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-04-19T13:40:25,757           already explicitly excluding 'moleculekit.tmalign.src' via
2024-04-19T13:40:25,758           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,758           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,758           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,758           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,758           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,759           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,759                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,759                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,759                 directory, all directories are treated like packages.
2024-04-19T13:40:25,760           ********************************************************************************

2024-04-19T13:40:25,760   !!
2024-04-19T13:40:25,760     check.warn(importable)
2024-04-19T13:40:25,760   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-04-19T13:40:25,760   !!

2024-04-19T13:40:25,761           ********************************************************************************
2024-04-19T13:40:25,761           ############################
2024-04-19T13:40:25,761           # Package would be ignored #
2024-04-19T13:40:25,761           ############################
2024-04-19T13:40:25,761           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-04-19T13:40:25,761           but it is absent from setuptools' `packages` configuration.

2024-04-19T13:40:25,761           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-19T13:40:25,761           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-04-19T13:40:25,762           to the `packages` configuration field.

2024-04-19T13:40:25,762           Alternatively, you can also rely on setuptools' discovery methods
2024-04-19T13:40:25,762           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-19T13:40:25,762           instead of `find_packages(...)`/`find:`).

2024-04-19T13:40:25,762           You can read more about "package discovery" on setuptools documentation page:

2024-04-19T13:40:25,763           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-19T13:40:25,763           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-04-19T13:40:25,763           already explicitly excluding 'moleculekit.wrapping' via
2024-04-19T13:40:25,763           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-19T13:40:25,763           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-19T13:40:25,763           combination with a more fine grained `package-data` configuration.

2024-04-19T13:40:25,763           You can read more about "package data files" on setuptools documentation page:

2024-04-19T13:40:25,764           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-19T13:40:25,764           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-19T13:40:25,764                 even if it does not contain any `.py` files.
2024-04-19T13:40:25,764                 On the other hand, currently there is no concept of package data
2024-04-19T13:40:25,764                 directory, all directories are treated like packages.
2024-04-19T13:40:25,765           ********************************************************************************

2024-04-19T13:40:25,766   !!
2024-04-19T13:40:25,766     check.warn(importable)
2024-04-19T13:40:25,766   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,766   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:25,767   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-04-19T13:40:25,767   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-04-19T13:40:25,771   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-04-19T13:40:25,773   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-04-19T13:40:25,774   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-04-19T13:40:25,776   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-04-19T13:40:25,776   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-04-19T13:40:25,776   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-04-19T13:40:25,778   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-04-19T13:40:25,780   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-04-19T13:40:25,781   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-04-19T13:40:25,803   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-04-19T13:40:25,806   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-04-19T13:40:25,806   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-04-19T13:40:25,824   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-04-19T13:40:25,826   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-04-19T13:40:25,827   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-04-19T13:40:25,829   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-04-19T13:40:25,831   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-04-19T13:40:26,033   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-04-19T13:40:26,033   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-04-19T13:40:26,035   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-04-19T13:40:26,036   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,037   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,039   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,040   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,042   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,044   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,046   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,048   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,050   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,052   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,054   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,055   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,058   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,059   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,061   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,063   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,065   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,067   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,069   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,071   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,073   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,074   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,077   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,079   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,081   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,082   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,084   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,086   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,088   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,090   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,092   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,094   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,095   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,098   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,099   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,101   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,103   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,105   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,107   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,109   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,111   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,113   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,114   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,116   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,118   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,120   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,122   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,124   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,126   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,128   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,130   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,132   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,134   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,135   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,137   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,139   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,141   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,143   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,145   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,147   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,149   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,150   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,152   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,154   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,156   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,158   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,160   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,162   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,164   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,165   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,167   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,169   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,171   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,173   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,175   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,177   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,179   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,180   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,182   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,184   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,186   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,188   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,190   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,191   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,193   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,195   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,197   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,199   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,201   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,203   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,204   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,206   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,208   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,210   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,212   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,214   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,216   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,217   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,219   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,221   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,223   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,225   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,227   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,229   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,231   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,232   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,234   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,236   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,238   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,240   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,242   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,243   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,245   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,247   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,249   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,251   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,253   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,255   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,257   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,259   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,261   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,262   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,264   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,266   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,268   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,270   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,272   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,274   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,276   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,278   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,280   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,281   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,283   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,285   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,287   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,289   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,291   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,293   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,295   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,297   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,298   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,300   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,303   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,304   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,307   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,309   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,311   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,313   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,315   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,317   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,320   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,322   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,324   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,326   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,329   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,331   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,333   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,335   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,338   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,340   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,342   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,345   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,347   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,349   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,352   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,354   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,356   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,358   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,360   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,362   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,365   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,367   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,369   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,371   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,373   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,375   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-04-19T13:40:26,378   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-04-19T13:40:26,379   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-04-19T13:40:26,399   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-04-19T13:40:26,401   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-04-19T13:40:26,403   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-04-19T13:40:26,405   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-04-19T13:40:26,407   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-04-19T13:40:26,408   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-04-19T13:40:26,414   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-04-19T13:40:26,415   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-04-19T13:40:26,438   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-04-19T13:40:26,440   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-04-19T13:40:26,441   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-04-19T13:40:26,454   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-04-19T13:40:26,456   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-04-19T13:40:26,458   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-04-19T13:40:26,459   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-04-19T13:40:26,461   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-04-19T13:40:26,463   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-04-19T13:40:26,466   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-04-19T13:40:26,466   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-04-19T13:40:26,469   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-04-19T13:40:26,469   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-04-19T13:40:26,483   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-04-19T13:40:26,486   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-04-19T13:40:26,488   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-04-19T13:40:26,489   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-04-19T13:40:26,491   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-04-19T13:40:26,494   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-04-19T13:40:26,496   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-04-19T13:40:26,498   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-04-19T13:40:26,501   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-04-19T13:40:26,502   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-04-19T13:40:26,505   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-04-19T13:40:26,506   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-04-19T13:40:26,526   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-04-19T13:40:26,529   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-04-19T13:40:26,531   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-04-19T13:40:26,532   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-04-19T13:40:26,552   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-04-19T13:40:26,554   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-04-19T13:40:26,556   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-04-19T13:40:26,558   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-04-19T13:40:26,560   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-04-19T13:40:26,562   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-04-19T13:40:26,565   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-04-19T13:40:26,568   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-04-19T13:40:26,570   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-04-19T13:40:26,572   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-04-19T13:40:26,573   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-04-19T13:40:26,575   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-04-19T13:40:26,579   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-04-19T13:40:26,582   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-04-19T13:40:26,584   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-04-19T13:40:26,587   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-04-19T13:40:26,588   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-04-19T13:40:26,614   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-04-19T13:40:26,616   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-04-19T13:40:26,617   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-04-19T13:40:26,635   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-04-19T13:40:26,637   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-04-19T13:40:26,638   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-04-19T13:40:26,658   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-04-19T13:40:26,661   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-04-19T13:40:26,661   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-04-19T13:40:26,681   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-04-19T13:40:26,693   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-04-19T13:40:26,694   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.31'
2024-04-19T13:40:26,694   running build_ext
2024-04-19T13:40:26,708   building 'moleculekit.interactions.hbonds' extension
2024-04-19T13:40:26,708   creating build/temp.linux-armv7l-cpython-39
2024-04-19T13:40:26,709   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-04-19T13:40:26,710   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-04-19T13:40:26,710   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-04-19T13:40:26,711   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-04-19T13:40:27,025   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:40:27,025                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:40:27,026                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:40:27,026                    from moleculekit/interactions/hbonds/hbonds.cpp:1265:
2024-04-19T13:40:27,026   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:40:27,026      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:40:27,027         |  ^~~~~~~
2024-04-19T13:40:50,172   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-04-19T13:40:50,172   moleculekit/interactions/hbonds/hbonds.cpp:21019:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:40:50,173   21019 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-04-19T13:40:50,173         |                                                    ^~~~~~~~~~~~~~~
2024-04-19T13:40:50,173   moleculekit/interactions/hbonds/hbonds.cpp:20032:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-04-19T13:40:50,173   20032 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-04-19T13:40:50,173         |                                                         ^~~~~~~~~~~~~~~
2024-04-19T13:40:53,326   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:40:53,653   building 'moleculekit.interactions.pipi' extension
2024-04-19T13:40:53,654   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-04-19T13:40:53,655   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-04-19T13:40:53,885   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:40:53,885                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:40:53,885                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:40:53,886                    from moleculekit/interactions/pipi/pipi.cpp:1265:
2024-04-19T13:40:53,886   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:40:53,886      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:40:53,886         |  ^~~~~~~
2024-04-19T13:41:24,279   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:41:24,684   building 'moleculekit.interactions.cationpi' extension
2024-04-19T13:41:24,685   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-04-19T13:41:24,686   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-04-19T13:41:26,416   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:41:26,417                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:41:26,417                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:41:26,417                    from moleculekit/interactions/cationpi/cationpi.cpp:1265:
2024-04-19T13:41:26,417   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:41:26,417      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:41:26,417         |  ^~~~~~~
2024-04-19T13:41:57,387   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:41:57,707   building 'moleculekit.interactions.sigmahole' extension
2024-04-19T13:41:57,708   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-04-19T13:41:57,709   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-04-19T13:41:57,945   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:41:57,945                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:41:57,945                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:41:57,945                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1265:
2024-04-19T13:41:57,946   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:41:57,946      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:41:57,946         |  ^~~~~~~
2024-04-19T13:42:25,534   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:42:25,851   building 'moleculekit.wrapping' extension
2024-04-19T13:42:25,851   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-04-19T13:42:25,852   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-04-19T13:42:26,086   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:42:26,086                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:42:26,086                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:42:26,086                    from moleculekit/wrapping/wrapping.cpp:1265:
2024-04-19T13:42:26,087   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:42:26,087      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:42:26,087         |  ^~~~~~~
2024-04-19T13:42:52,006   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:42:52,223   building 'moleculekit.bondguesser_utils' extension
2024-04-19T13:42:52,224   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-04-19T13:42:52,224   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-04-19T13:42:52,457   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:42:52,457                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:42:52,457                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:42:52,458                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1265:
2024-04-19T13:42:52,458   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:42:52,458      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:42:52,458         |  ^~~~~~~
2024-04-19T13:42:54,007   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-04-19T13:42:54,007   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19801:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-04-19T13:42:54,007   19801 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-04-19T13:42:54,007         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-04-19T13:42:54,007   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19813:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-04-19T13:42:54,008   19813 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-04-19T13:42:54,008         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-04-19T13:42:54,008   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19825:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-04-19T13:42:54,008   19825 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-04-19T13:42:54,008         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-04-19T13:42:54,008   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19864:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,008   19864 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-04-19T13:42:54,009         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,009   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19903:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,009   19903 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-04-19T13:42:54,009         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,009   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19942:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,009   19942 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-04-19T13:42:54,009         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,010   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19981:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,010   19981 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-04-19T13:42:54,010         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,010   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19987:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,010   19987 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-04-19T13:42:54,010         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,010   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20028:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,011   20028 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-04-19T13:42:54,011         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,011   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20034:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,011   20034 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-04-19T13:42:54,011         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,011   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20075:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,011   20075 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-04-19T13:42:54,012         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,012   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20081:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,012   20081 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-04-19T13:42:54,012         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,012   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20122:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,012   20122 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-04-19T13:42:54,012         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,013   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20175:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,013   20175 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-04-19T13:42:54,013         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,013   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20222:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,013   20222 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-04-19T13:42:54,013         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,013   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20263:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,014   20263 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-04-19T13:42:54,014         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,014   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20269:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,014   20269 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-04-19T13:42:54,014         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,014   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20275:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,014   20275 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-04-19T13:42:54,015         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,015   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20322:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,015   20322 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-04-19T13:42:54,015         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,015   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20328:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,015   20328 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-04-19T13:42:54,015         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,016   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20369:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,016   20369 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-04-19T13:42:54,016         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,016   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20381:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,016   20381 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-04-19T13:42:54,016         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,016   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20434:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-04-19T13:42:54,017   20434 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-04-19T13:42:54,017         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,036   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-04-19T13:42:54,036   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21056:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-04-19T13:42:54,036   21056 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-04-19T13:42:54,036         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-04-19T13:42:54,036   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21093:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-04-19T13:42:54,037   21093 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-04-19T13:42:54,037         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-04-19T13:43:17,099   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:43:17,404   building 'moleculekit.atomselect_utils' extension
2024-04-19T13:43:17,404   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-04-19T13:43:17,405   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-04-19T13:43:17,867   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:43:17,868                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:43:17,868                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:43:17,868                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1282:
2024-04-19T13:43:17,868   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:43:17,868      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:43:17,868         |  ^~~~~~~
2024-04-19T13:43:19,617   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-04-19T13:43:19,617   moleculekit/atomselect_utils/atomselect_utils.cpp:23255:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-04-19T13:43:19,618   23255 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-04-19T13:43:19,618         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-04-19T13:43:19,623   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-04-19T13:43:19,623   moleculekit/atomselect_utils/atomselect_utils.cpp:23507:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-04-19T13:43:19,623   23507 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-04-19T13:43:19,623         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-04-19T13:43:19,628   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-04-19T13:43:19,628   moleculekit/atomselect_utils/atomselect_utils.cpp:23774:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-04-19T13:43:19,628   23774 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-04-19T13:43:19,629         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-04-19T13:43:49,947   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:43:50,280   building 'moleculekit.distance_utils' extension
2024-04-19T13:43:50,281   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-04-19T13:43:50,282   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-04-19T13:43:50,515   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:43:50,516                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:43:50,516                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:43:50,516                    from moleculekit/distance_utils/distance_utils.cpp:1265:
2024-04-19T13:43:50,516   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:43:50,516      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:43:50,516         |  ^~~~~~~
2024-04-19T13:43:52,163   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-04-19T13:43:52,163   moleculekit/distance_utils/distance_utils.cpp:21359:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-04-19T13:43:52,164   21359 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-04-19T13:43:52,164         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-04-19T13:43:52,164   moleculekit/distance_utils/distance_utils.cpp:21371:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-04-19T13:43:52,164   21371 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-04-19T13:43:52,164         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-04-19T13:44:25,278   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:44:25,619   building 'moleculekit.occupancy_utils' extension
2024-04-19T13:44:25,619   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-04-19T13:44:25,620   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-04-19T13:44:25,859   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:44:25,859                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:44:25,859                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:44:25,859                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1265:
2024-04-19T13:44:25,860   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:44:25,860      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:44:25,860         |  ^~~~~~~
2024-04-19T13:44:48,915   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:44:49,128   building 'moleculekit.cython_utils' extension
2024-04-19T13:44:49,129   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-04-19T13:44:49,130   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-04-19T13:44:49,368   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:44:49,368                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:44:49,369                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:44:49,369                    from moleculekit/cython_utils/cython_utils.cpp:1265:
2024-04-19T13:44:49,369   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:44:49,369      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:44:49,369         |  ^~~~~~~
2024-04-19T13:45:14,854   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:45:15,169   building 'moleculekit.xtc' extension
2024-04-19T13:45:15,170   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-04-19T13:45:15,170   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-04-19T13:45:15,171   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-04-19T13:45:15,172   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-04-19T13:45:15,412   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,413      66 |  "OK",
2024-04-19T13:45:15,413         |  ^~~~
2024-04-19T13:45:15,413   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,413      67 |  "Header",
2024-04-19T13:45:15,413         |  ^~~~~~~~
2024-04-19T13:45:15,413   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,414      68 |  "String",
2024-04-19T13:45:15,414         |  ^~~~~~~~
2024-04-19T13:45:15,414   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,414      69 |  "Double",
2024-04-19T13:45:15,414         |  ^~~~~~~~
2024-04-19T13:45:15,414   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,414      70 |  "Integer",
2024-04-19T13:45:15,414         |  ^~~~~~~~~
2024-04-19T13:45:15,415   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,415      71 |  "Float",
2024-04-19T13:45:15,415         |  ^~~~~~~
2024-04-19T13:45:15,415   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,415      72 |  "Unsigned integer",
2024-04-19T13:45:15,415         |  ^~~~~~~~~~~~~~~~~~
2024-04-19T13:45:15,415   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,416      73 |  "Compressed 3D coordinate",
2024-04-19T13:45:15,416         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:45:15,416   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,416      74 |  "Closing file",
2024-04-19T13:45:15,416         |  ^~~~~~~~~~~~~~
2024-04-19T13:45:15,416   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,416      75 |  "Magic number",
2024-04-19T13:45:15,417         |  ^~~~~~~~~~~~~~
2024-04-19T13:45:15,417   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,417      76 |  "Not enough memory",
2024-04-19T13:45:15,417         |  ^~~~~~~~~~~~~~~~~~~
2024-04-19T13:45:15,417   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,417      77 |  "End of file",
2024-04-19T13:45:15,417         |  ^~~~~~~~~~~~~
2024-04-19T13:45:15,418   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:15,418      78 |  "File not found"
2024-04-19T13:45:15,418         |  ^~~~~~~~~~~~~~~~
2024-04-19T13:45:15,422   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-04-19T13:45:15,422   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,422     459 |     while (size >= num && num_of_bits < 32)
2024-04-19T13:45:15,422         |            ~~~~~^~~~~~
2024-04-19T13:45:15,423   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-04-19T13:45:15,423   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:15,423     505 |     while (bytes[num_of_bytes] >= num)
2024-04-19T13:45:15,423         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-04-19T13:45:15,425   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-04-19T13:45:15,425   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,426     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-04-19T13:45:15,426         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-04-19T13:45:15,426   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,426     616 |   for (i = 0; i < num_of_bytes; i++)
2024-04-19T13:45:15,426         |               ~~^~~~~~~~~~~~~~
2024-04-19T13:45:15,426   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,426     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-04-19T13:45:15,427         |               ~~^~~~~~~~~~~~~~~~
2024-04-19T13:45:15,427   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-04-19T13:45:15,427   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:15,427     664 |   if (lastbits < num_of_bits)
2024-04-19T13:45:15,427         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-04-19T13:45:15,430   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-04-19T13:45:15,431   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:15,431     785 |  if(size3>xfp->buf1size)
2024-04-19T13:45:15,431         |     ~~~~~^~~~~~~~~~~~~~
2024-04-19T13:45:15,432   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:15,432     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-04-19T13:45:15,433         |                   ^
2024-04-19T13:45:15,435   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,435     932 |     if(countmjh >= size3 ) { return -1; }
2024-04-19T13:45:15,435         |        ~~~~~~~~~^~~~~~~~
2024-04-19T13:45:15,435   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,436     935 |     if(countmjh >= size3 ) { return -1; }
2024-04-19T13:45:15,436         |        ~~~~~~~~~^~~~~~~~
2024-04-19T13:45:15,436   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,436     938 |     if(countmjh >= size3 ) { return -1; }
2024-04-19T13:45:15,436         |        ~~~~~~~~~^~~~~~~~
2024-04-19T13:45:15,436   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,437     945 |     if(countmjh >= size3 ) { return -1; }
2024-04-19T13:45:15,437         |        ~~~~~~~~~^~~~~~~~
2024-04-19T13:45:15,437   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,437     948 |     if(countmjh >= size3 ) { return -1; }
2024-04-19T13:45:15,437         |        ~~~~~~~~~^~~~~~~~
2024-04-19T13:45:15,437   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,437     951 |     if(countmjh >= size3 ) { return -1; }
2024-04-19T13:45:15,437         |        ~~~~~~~~~^~~~~~~~
2024-04-19T13:45:15,438   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-04-19T13:45:15,438     756 |  int smallidx,  minidx, maxidx;
2024-04-19T13:45:15,438         |                 ^~~~~~
2024-04-19T13:45:15,438   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-04-19T13:45:15,438     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-04-19T13:45:15,438         |                         ^~~~~~
2024-04-19T13:45:15,438   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-04-19T13:45:15,438     763 |  int errval=1;
2024-04-19T13:45:15,439         |      ^~~~~~
2024-04-19T13:45:15,439   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-04-19T13:45:15,440   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:15,440    1011 |  if(size3>xfp->buf1size)
2024-04-19T13:45:15,440         |     ~~~~~^~~~~~~~~~~~~~
2024-04-19T13:45:15,441   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,442    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-04-19T13:45:15,442         |                     ~~~~~~~~^~~~~~~
2024-04-19T13:45:15,442   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,442    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-04-19T13:45:15,442         |                    ~~~~~~~~^~~~~~~
2024-04-19T13:45:15,443   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,443    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-04-19T13:45:15,443         |                    ~~~~~~~~^~~~~~~
2024-04-19T13:45:15,444   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,445    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-04-19T13:45:15,445         |                  ^
2024-04-19T13:45:15,445   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:15,445    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-04-19T13:45:15,445         |                   ^
2024-04-19T13:45:15,449   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,449    1275 |  if(tmp==(unsigned int)buf2[0])
2024-04-19T13:45:15,449         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:45:15,449   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-04-19T13:45:15,449    1001 |  int errval;
2024-04-19T13:45:15,449         |      ^~~~~~
2024-04-19T13:45:15,452   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-04-19T13:45:15,452   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:15,452    1316 |  if(size3>xfp->buf1size)
2024-04-19T13:45:15,452         |     ~~~~~^~~~~~~~~~~~~~
2024-04-19T13:45:15,454   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:15,454    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-04-19T13:45:15,454         |                   ^
2024-04-19T13:45:15,457   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-04-19T13:45:15,457    1289 |  int smallidx,  maxidx, minidx;
2024-04-19T13:45:15,457         |                         ^~~~~~
2024-04-19T13:45:15,457   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-04-19T13:45:15,458    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-04-19T13:45:15,458         |                         ^~~~~~
2024-04-19T13:45:15,458   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-04-19T13:45:15,458    1297 |  int errval=1;
2024-04-19T13:45:15,458         |      ^~~~~~
2024-04-19T13:45:15,459   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-04-19T13:45:15,459   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:15,460    1513 |  if(size3>xfp->buf1size) {
2024-04-19T13:45:15,460         |     ~~~~~^~~~~~~~~~~~~~
2024-04-19T13:45:15,464   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,464    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-04-19T13:45:15,464         |                  ^
2024-04-19T13:45:15,464   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:15,464    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-04-19T13:45:15,464         |                   ^
2024-04-19T13:45:15,468   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:15,468    1743 |  if(tmp==(unsigned int)buf2[0])
2024-04-19T13:45:15,468         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:45:15,468   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-04-19T13:45:15,469    1504 |  int errval=1;
2024-04-19T13:45:15,469         |      ^~~~~~
2024-04-19T13:45:17,710   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-04-19T13:45:17,971   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-04-19T13:45:18,550   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-04-19T13:45:18,550   moleculekit/fileformats/xtc/src/xtc.cpp:234:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-04-19T13:45:18,550     234 |   for (aidx = 0; aidx < natoms; aidx++)
2024-04-19T13:45:18,550         |                  ~~~~~^~~~~~~~
2024-04-19T13:45:18,556   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-04-19T13:45:18,557   moleculekit/fileformats/xtc/src/xtc.cpp:436:16: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-04-19T13:45:18,557     436 |  for (f = 0; f < nframes; f++)
2024-04-19T13:45:18,557         |              ~~^~~~~~~~~
2024-04-19T13:45:18,557   moleculekit/fileformats/xtc/src/xtc.cpp:451:17: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-04-19T13:45:18,557     451 |   for (i = 0; i < natoms; i++)
2024-04-19T13:45:18,557         |               ~~^~~~~~~~
2024-04-19T13:45:18,560   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-04-19T13:45:18,560   moleculekit/fileformats/xtc/src/xtc.cpp:541:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-04-19T13:45:18,560     541 |    for (aidx = 0; aidx < natoms; aidx++)
2024-04-19T13:45:18,560         |                   ~~~~~^~~~~~~~
2024-04-19T13:45:18,562   moleculekit/fileformats/xtc/src/xtc.cpp:610:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-04-19T13:45:18,562     610 |    for (aidx = 0; aidx < natoms; aidx++)
2024-04-19T13:45:18,563         |                   ~~~~~^~~~~~~~
2024-04-19T13:45:19,346   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-04-19T13:45:19,593   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:45:19,593                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:45:19,593                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:45:19,593                    from moleculekit/fileformats/xtc/xtc.cpp:1269:
2024-04-19T13:45:19,594   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:45:19,594      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:45:19,594         |  ^~~~~~~
2024-04-19T13:45:39,646   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:45:39,965   building 'moleculekit.trr' extension
2024-04-19T13:45:39,966   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-04-19T13:45:40,086   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-04-19T13:45:40,316   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,316      66 |  "OK",
2024-04-19T13:45:40,316         |  ^~~~
2024-04-19T13:45:40,317   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,317      67 |  "Header",
2024-04-19T13:45:40,317         |  ^~~~~~~~
2024-04-19T13:45:40,317   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,317      68 |  "String",
2024-04-19T13:45:40,317         |  ^~~~~~~~
2024-04-19T13:45:40,318   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,318      69 |  "Double",
2024-04-19T13:45:40,318         |  ^~~~~~~~
2024-04-19T13:45:40,318   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,318      70 |  "Integer",
2024-04-19T13:45:40,318         |  ^~~~~~~~~
2024-04-19T13:45:40,319   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,319      71 |  "Float",
2024-04-19T13:45:40,319         |  ^~~~~~~
2024-04-19T13:45:40,319   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,319      72 |  "Unsigned integer",
2024-04-19T13:45:40,319         |  ^~~~~~~~~~~~~~~~~~
2024-04-19T13:45:40,320   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,320      73 |  "Compressed 3D coordinate",
2024-04-19T13:45:40,320         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:45:40,320   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,320      74 |  "Closing file",
2024-04-19T13:45:40,320         |  ^~~~~~~~~~~~~~
2024-04-19T13:45:40,320   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,321      75 |  "Magic number",
2024-04-19T13:45:40,321         |  ^~~~~~~~~~~~~~
2024-04-19T13:45:40,321   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,321      76 |  "Not enough memory",
2024-04-19T13:45:40,321         |  ^~~~~~~~~~~~~~~~~~~
2024-04-19T13:45:40,321   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,322      77 |  "End of file",
2024-04-19T13:45:40,322         |  ^~~~~~~~~~~~~
2024-04-19T13:45:40,322   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-04-19T13:45:40,322      78 |  "File not found"
2024-04-19T13:45:40,322         |  ^~~~~~~~~~~~~~~~
2024-04-19T13:45:40,330   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-04-19T13:45:40,331   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,331     459 |     while (size >= num && num_of_bits < 32)
2024-04-19T13:45:40,331         |            ~~~~~^~~~~~
2024-04-19T13:45:40,332   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-04-19T13:45:40,332   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:40,332     505 |     while (bytes[num_of_bytes] >= num)
2024-04-19T13:45:40,332         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-04-19T13:45:40,335   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-04-19T13:45:40,335   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,335     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-04-19T13:45:40,335         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-04-19T13:45:40,336   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,336     616 |   for (i = 0; i < num_of_bytes; i++)
2024-04-19T13:45:40,336         |               ~~^~~~~~~~~~~~~~
2024-04-19T13:45:40,337   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,337     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-04-19T13:45:40,337         |               ~~^~~~~~~~~~~~~~~~
2024-04-19T13:45:40,338   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-04-19T13:45:40,339   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:40,339     664 |   if (lastbits < num_of_bits)
2024-04-19T13:45:40,339         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-04-19T13:45:40,343   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-04-19T13:45:40,343   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:40,343     785 |  if(size3>xfp->buf1size)
2024-04-19T13:45:40,343         |     ~~~~~^~~~~~~~~~~~~~
2024-04-19T13:45:40,345   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:40,346     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-04-19T13:45:40,346         |                   ^
2024-04-19T13:45:40,349   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,349     932 |     if(countmjh >= size3 ) { return -1; }
2024-04-19T13:45:40,349         |        ~~~~~~~~~^~~~~~~~
2024-04-19T13:45:40,349   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,350     935 |     if(countmjh >= size3 ) { return -1; }
2024-04-19T13:45:40,350         |        ~~~~~~~~~^~~~~~~~
2024-04-19T13:45:40,350   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,350     938 |     if(countmjh >= size3 ) { return -1; }
2024-04-19T13:45:40,350         |        ~~~~~~~~~^~~~~~~~
2024-04-19T13:45:40,351   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,351     945 |     if(countmjh >= size3 ) { return -1; }
2024-04-19T13:45:40,351         |        ~~~~~~~~~^~~~~~~~
2024-04-19T13:45:40,352   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,352     948 |     if(countmjh >= size3 ) { return -1; }
2024-04-19T13:45:40,352         |        ~~~~~~~~~^~~~~~~~
2024-04-19T13:45:40,352   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,352     951 |     if(countmjh >= size3 ) { return -1; }
2024-04-19T13:45:40,353         |        ~~~~~~~~~^~~~~~~~
2024-04-19T13:45:40,353   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-04-19T13:45:40,354     756 |  int smallidx,  minidx, maxidx;
2024-04-19T13:45:40,354         |                 ^~~~~~
2024-04-19T13:45:40,354   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-04-19T13:45:40,354     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-04-19T13:45:40,354         |                         ^~~~~~
2024-04-19T13:45:40,354   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-04-19T13:45:40,355     763 |  int errval=1;
2024-04-19T13:45:40,355         |      ^~~~~~
2024-04-19T13:45:40,357   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-04-19T13:45:40,358   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:40,358    1011 |  if(size3>xfp->buf1size)
2024-04-19T13:45:40,358         |     ~~~~~^~~~~~~~~~~~~~
2024-04-19T13:45:40,360   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,360    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-04-19T13:45:40,360         |                     ~~~~~~~~^~~~~~~
2024-04-19T13:45:40,361   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,362    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-04-19T13:45:40,362         |                    ~~~~~~~~^~~~~~~
2024-04-19T13:45:40,363   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,363    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-04-19T13:45:40,363         |                    ~~~~~~~~^~~~~~~
2024-04-19T13:45:40,365   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,365    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-04-19T13:45:40,365         |                  ^
2024-04-19T13:45:40,366   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:40,366    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-04-19T13:45:40,366         |                   ^
2024-04-19T13:45:40,370   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,370    1275 |  if(tmp==(unsigned int)buf2[0])
2024-04-19T13:45:40,371         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:45:40,371   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-04-19T13:45:40,371    1001 |  int errval;
2024-04-19T13:45:40,371         |      ^~~~~~
2024-04-19T13:45:40,374   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-04-19T13:45:40,375   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:40,375    1316 |  if(size3>xfp->buf1size)
2024-04-19T13:45:40,375         |     ~~~~~^~~~~~~~~~~~~~
2024-04-19T13:45:40,377   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:40,377    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-04-19T13:45:40,378         |                   ^
2024-04-19T13:45:40,381   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-04-19T13:45:40,381    1289 |  int smallidx,  maxidx, minidx;
2024-04-19T13:45:40,381         |                         ^~~~~~
2024-04-19T13:45:40,381   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-04-19T13:45:40,381    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-04-19T13:45:40,381         |                         ^~~~~~
2024-04-19T13:45:40,382   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-04-19T13:45:40,382    1297 |  int errval=1;
2024-04-19T13:45:40,382         |      ^~~~~~
2024-04-19T13:45:40,384   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-04-19T13:45:40,385   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:40,385    1513 |  if(size3>xfp->buf1size) {
2024-04-19T13:45:40,385         |     ~~~~~^~~~~~~~~~~~~~
2024-04-19T13:45:40,389   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,390    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-04-19T13:45:40,390         |                  ^
2024-04-19T13:45:40,390   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:45:40,391    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-04-19T13:45:40,391         |                   ^
2024-04-19T13:45:40,395   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:45:40,395    1743 |  if(tmp==(unsigned int)buf2[0])
2024-04-19T13:45:40,395         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:45:40,395   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-04-19T13:45:40,396    1504 |  int errval=1;
2024-04-19T13:45:40,396         |      ^~~~~~
2024-04-19T13:45:42,666   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-04-19T13:45:42,757   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-04-19T13:45:42,757   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-04-19T13:45:42,757     111 |         if (slen != strlen(version)+1)
2024-04-19T13:45:42,758         |                  ^~
2024-04-19T13:45:42,758   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-04-19T13:45:42,758     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-04-19T13:45:42,758         |                                              ^~
2024-04-19T13:45:43,326   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-04-19T13:45:43,643   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:45:43,643                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:45:43,643                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:45:43,644                    from moleculekit/fileformats/xtc/trr.c:1261:
2024-04-19T13:45:43,644   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:45:43,644      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:45:43,644         |  ^~~~~~~
2024-04-19T13:45:44,267   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-04-19T13:45:44,275   moleculekit/fileformats/xtc/trr.c:16352:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-04-19T13:45:44,276   16352 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-04-19T13:45:44,276         |                                     ^~
2024-04-19T13:46:04,648   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-04-19T13:46:04,649   moleculekit/fileformats/xtc/trr.c:1163:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:04,649    1163 |   #define PyInt_FromLong               PyLong_FromLong
2024-04-19T13:46:04,649         |                                        ^~~~~~~~~~~~~~~
2024-04-19T13:46:04,658   moleculekit/fileformats/xtc/trr.c:14260:7: note: ‘__pyx_v_status’ was declared here
2024-04-19T13:46:04,658   14260 |   int __pyx_v_status;
2024-04-19T13:46:04,658         |       ^~~~~~~~~~~~~~
2024-04-19T13:46:15,052   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-04-19T13:46:15,059   moleculekit/fileformats/xtc/trr.c:11559:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,059   11559 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-04-19T13:46:15,059         |                   ^
2024-04-19T13:46:15,067   moleculekit/fileformats/xtc/trr.c:11555:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,067   11555 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-04-19T13:46:15,067         |                   ^
2024-04-19T13:46:15,068   moleculekit/fileformats/xtc/trr.c:2509:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,069    2509 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-04-19T13:46:15,069         |                                                                                               ^
2024-04-19T13:46:15,075   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-04-19T13:46:15,075   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-04-19T13:46:15,075         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-04-19T13:46:15,081   moleculekit/fileformats/xtc/trr.c:11549:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,082   11549 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-04-19T13:46:15,082         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-04-19T13:46:15,089   moleculekit/fileformats/xtc/trr.c:11502:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,089   11502 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-04-19T13:46:15,089         |                   ^
2024-04-19T13:46:15,097   moleculekit/fileformats/xtc/trr.c:11498:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,097   11498 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-04-19T13:46:15,097         |                   ^
2024-04-19T13:46:15,098   moleculekit/fileformats/xtc/trr.c:2509:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,098    2509 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-04-19T13:46:15,099         |                                                                                               ^
2024-04-19T13:46:15,104   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-04-19T13:46:15,105   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-04-19T13:46:15,105         |                     ^~~~~~~~~~~~~~~~~~~~
2024-04-19T13:46:15,111   moleculekit/fileformats/xtc/trr.c:11492:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,111   11492 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-04-19T13:46:15,112         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-04-19T13:46:15,118   moleculekit/fileformats/xtc/trr.c:11891:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,118   11891 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-04-19T13:46:15,118         |                 ^
2024-04-19T13:46:15,126   moleculekit/fileformats/xtc/trr.c:11887:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,126   11887 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-04-19T13:46:15,126         |                 ^
2024-04-19T13:46:15,133   moleculekit/fileformats/xtc/trr.c:11732:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,133   11732 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-04-19T13:46:15,133         |                   ^
2024-04-19T13:46:15,140   moleculekit/fileformats/xtc/trr.c:11728:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,140   11728 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-04-19T13:46:15,140         |                   ^
2024-04-19T13:46:15,146   moleculekit/fileformats/xtc/trr.c:11784:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,146   11784 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-04-19T13:46:15,146         |                   ^
2024-04-19T13:46:15,153   moleculekit/fileformats/xtc/trr.c:11780:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:15,153   11780 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-04-19T13:46:15,154         |                   ^
2024-04-19T13:46:21,623   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:46:21,808   building 'moleculekit.dcd' extension
2024-04-19T13:46:21,809   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-04-19T13:46:21,810   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-04-19T13:46:21,811   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-04-19T13:46:22,138   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:46:22,138                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:46:22,138                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:46:22,138                    from moleculekit/fileformats/dcd/dcd.c:1256:
2024-04-19T13:46:22,138   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:46:22,138      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:46:22,139         |  ^~~~~~~
2024-04-19T13:46:23,166   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-04-19T13:46:23,166                    from moleculekit/fileformats/dcd/dcd.c:1262:
2024-04-19T13:46:23,167   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-04-19T13:46:23,167     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-04-19T13:46:23,167         |            ^~~~~~~~~~~~~
2024-04-19T13:46:23,167   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-04-19T13:46:23,167     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-04-19T13:46:23,167         |            ^~~~~~~~~~~~~~
2024-04-19T13:46:23,167   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-04-19T13:46:23,168     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-04-19T13:46:23,168         |            ^~~~~~~~~~~~~~~
2024-04-19T13:46:23,168   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-04-19T13:46:23,168     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-04-19T13:46:23,168         |                   ^~~~~~~~~
2024-04-19T13:46:23,168   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-04-19T13:46:23,168     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-04-19T13:46:23,168         |                   ^~~~~~~~~
2024-04-19T13:46:23,169   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-04-19T13:46:23,169     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-04-19T13:46:23,169         |                   ^~~~~~~~~
2024-04-19T13:46:23,169   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-04-19T13:46:23,169     394 | static int fio_fclose(fio_fd fd) {
2024-04-19T13:46:23,169         |            ^~~~~~~~~~
2024-04-19T13:46:23,169   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-04-19T13:46:23,169     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-04-19T13:46:23,170         |            ^~~~~~~~
2024-04-19T13:46:35,924   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-04-19T13:46:35,924   moleculekit/fileformats/dcd/dcd.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:35,925    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-04-19T13:46:35,925         |                                        ^~~~~~~~~~~~~~~
2024-04-19T13:46:35,929   moleculekit/fileformats/dcd/dcd.c:8022:7: note: ‘__pyx_v_i’ was declared here
2024-04-19T13:46:35,930    8022 |   int __pyx_v_i;
2024-04-19T13:46:35,930         |       ^~~~~~~~~
2024-04-19T13:46:39,171   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-04-19T13:46:39,357   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-04-19T13:46:39,357   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:46:39,357     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-04-19T13:46:39,358         |                                                       ^~
2024-04-19T13:46:39,358   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:46:39,358     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-04-19T13:46:39,358         |                                                      ^~
2024-04-19T13:46:39,358   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:46:39,358     194 |     if (input_integer[0] != dcdcordmagic)
2024-04-19T13:46:39,359         |                          ^~
2024-04-19T13:46:39,361   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:46:39,362     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-04-19T13:46:39,362         |                                               ^~
2024-04-19T13:46:39,362   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-04-19T13:46:39,362     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-04-19T13:46:39,362         |                                               ^~
2024-04-19T13:46:39,366   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-04-19T13:46:39,366   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:46:39,366     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-04-19T13:46:39,366         |                       ^~
2024-04-19T13:46:39,367   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-04-19T13:46:39,367     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-04-19T13:46:39,367         |                                                 ^~
2024-04-19T13:46:39,389   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-04-19T13:46:39,390   At top level:
2024-04-19T13:46:39,390   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-04-19T13:46:39,390      96 | static void swap2_aligned(void *v, long ndata) {
2024-04-19T13:46:39,390         |             ^~~~~~~~~~~~~
2024-04-19T13:46:39,390   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-04-19T13:46:39,390      32 | static void swap2_unaligned(void *v, long ndata) {
2024-04-19T13:46:39,390         |             ^~~~~~~~~~~~~~~
2024-04-19T13:46:39,391   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-04-19T13:46:39,391   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-04-19T13:46:39,391     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-04-19T13:46:39,391         |            ^~~~~~~~~~~~~
2024-04-19T13:46:39,391   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-04-19T13:46:39,391     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-04-19T13:46:39,392         |            ^~~~~~~~~~~~~~
2024-04-19T13:46:40,529   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:46:40,673   building 'moleculekit.binpos' extension
2024-04-19T13:46:40,674   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-04-19T13:46:40,675   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-04-19T13:46:40,677   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-04-19T13:46:41,011   In file included from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-04-19T13:46:41,012                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-04-19T13:46:41,012                    from /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-04-19T13:46:41,012                    from moleculekit/fileformats/binpos/binpos.c:1256:
2024-04-19T13:46:41,012   /tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-04-19T13:46:41,012      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-04-19T13:46:41,012         |  ^~~~~~~
2024-04-19T13:46:54,457   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-04-19T13:46:54,461   moleculekit/fileformats/binpos/binpos.c:8045:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:54,461    8045 |   if (__pyx_t_1) {
2024-04-19T13:46:54,462         |      ^
2024-04-19T13:46:54,465   moleculekit/fileformats/binpos/binpos.c:7522:7: note: ‘__pyx_v_status’ was declared here
2024-04-19T13:46:54,466    7522 |   int __pyx_v_status;
2024-04-19T13:46:54,466         |       ^~~~~~~~~~~~~~
2024-04-19T13:46:54,466   moleculekit/fileformats/binpos/binpos.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-04-19T13:46:54,466    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-04-19T13:46:54,466         |                                        ^~~~~~~~~~~~~~~
2024-04-19T13:46:54,470   moleculekit/fileformats/binpos/binpos.c:7519:7: note: ‘__pyx_v_i’ was declared here
2024-04-19T13:46:54,470    7519 |   int __pyx_v_i;
2024-04-19T13:46:54,471         |       ^~~~~~~~~
2024-04-19T13:46:56,703   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-04-19T13:46:57,000   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:46:57,139   building 'moleculekit.tmalign' extension
2024-04-19T13:46:57,140   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-04-19T13:46:57,141   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-04-19T13:46:57,142   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-04-19T13:47:26,716   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-2wlektvw/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-04-19T13:47:45,203   In file included from /usr/include/c++/10/vector:72,
2024-04-19T13:47:45,203                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-04-19T13:47:45,203   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-04-19T13:47:45,203   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-04-19T13:47:45,203     426 |       vector<_Tp, _Alloc>::
2024-04-19T13:47:45,203         |       ^~~~~~~~~~~~~~~~~~~
2024-04-19T13:47:45,782   In file included from /usr/include/c++/10/vector:67,
2024-04-19T13:47:45,782                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-04-19T13:47:45,782   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-04-19T13:47:45,783   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-04-19T13:47:45,783    1198 |    _M_realloc_insert(end(), __x);
2024-04-19T13:47:45,783         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-04-19T13:47:45,783   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-04-19T13:47:45,783    1198 |    _M_realloc_insert(end(), __x);
2024-04-19T13:47:45,783         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-04-19T13:47:45,784   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-04-19T13:47:45,784    1198 |    _M_realloc_insert(end(), __x);
2024-04-19T13:47:45,784         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-04-19T13:47:48,209   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-04-19T13:47:48,654   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-04-19T13:47:48,654   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.31'
2024-04-19T13:47:48,654   installing to build/bdist.linux-armv7l/wheel
2024-04-19T13:47:48,654   running install
2024-04-19T13:47:48,679   running install_lib
2024-04-19T13:47:48,686   creating build/bdist.linux-armv7l
2024-04-19T13:47:48,686   creating build/bdist.linux-armv7l/wheel
2024-04-19T13:47:48,688   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:48,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:48,691   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:48,694   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:48,697   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-04-19T13:47:48,698   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-04-19T13:47:48,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-04-19T13:47:48,718   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-04-19T13:47:48,721   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-04-19T13:47:48,744   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-04-19T13:47:48,746   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-04-19T13:47:48,748   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-04-19T13:47:48,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-04-19T13:47:48,751   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-04-19T13:47:48,752   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-04-19T13:47:48,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-04-19T13:47:48,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-04-19T13:47:48,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-04-19T13:47:48,760   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-04-19T13:47:48,761   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-04-19T13:47:48,763   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-04-19T13:47:48,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-04-19T13:47:48,769   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-04-19T13:47:48,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-04-19T13:47:48,772   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-04-19T13:47:48,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-04-19T13:47:48,776   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-04-19T13:47:48,779   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-04-19T13:47:48,780   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-04-19T13:47:48,782   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-04-19T13:47:48,803   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-04-19T13:47:48,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-04-19T13:47:48,806   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-04-19T13:47:48,808   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-04-19T13:47:48,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-04-19T13:47:48,813   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-04-19T13:47:48,815   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-04-19T13:47:48,818   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-04-19T13:47:48,819   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-04-19T13:47:48,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-04-19T13:47:48,824   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-04-19T13:47:48,825   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-04-19T13:47:48,827   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-04-19T13:47:48,829   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-04-19T13:47:48,830   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-04-19T13:47:48,832   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-04-19T13:47:48,834   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-04-19T13:47:48,837   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-04-19T13:47:48,838   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-04-19T13:47:48,840   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-04-19T13:47:48,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-04-19T13:47:48,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:48,857   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-04-19T13:47:48,858   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-04-19T13:47:48,860   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-04-19T13:47:48,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:48,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:48,912   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-04-19T13:47:48,913   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-04-19T13:47:48,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-04-19T13:47:48,939   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:48,944   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-04-19T13:47:48,945   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-04-19T13:47:48,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-04-19T13:47:48,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-04-19T13:47:48,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-04-19T13:47:48,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-04-19T13:47:48,955   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-04-19T13:47:48,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-04-19T13:47:48,957   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-04-19T13:47:48,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-04-19T13:47:48,961   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-04-19T13:47:48,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-04-19T13:47:48,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-04-19T13:47:48,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-04-19T13:47:48,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-04-19T13:47:48,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:48,972   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,025   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-04-19T13:47:49,026   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-04-19T13:47:49,029   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-04-19T13:47:49,032   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,047   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,052   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,055   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,057   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,059   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,062   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,064   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,065   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,067   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,071   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,075   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,101   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,106   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,112   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,114   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,116   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,118   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,140   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,142   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,155   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,160   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,168   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,171   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,173   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,178   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,180   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,182   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,195   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,200   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,202   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,212   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,218   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,223   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,232   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,235   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,237   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,240   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,244   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,246   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,247   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,256   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,267   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,269   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,271   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,274   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,281   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,283   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,290   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,293   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,301   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,307   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,309   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,312   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,314   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,319   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,329   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,331   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,334   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,336   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,339   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,342   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,349   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,352   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,354   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,357   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,360   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,362   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,367   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,370   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-04-19T13:47:49,402   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-04-19T13:47:49,403   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-04-19T13:47:49,405   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-04-19T13:47:49,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-04-19T13:47:49,611   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,639   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,643   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,647   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,650   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,659   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,661   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,666   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-04-19T13:47:49,672   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-04-19T13:47:49,672   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-04-19T13:47:49,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-04-19T13:47:49,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,740   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,742   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-04-19T13:47:49,743   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-04-19T13:47:49,745   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-04-19T13:47:49,746   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-04-19T13:47:49,768   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-04-19T13:47:49,769   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-04-19T13:47:49,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-04-19T13:47:49,776   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-04-19T13:47:49,778   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,780   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,781   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,783   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,786   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,788   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,789   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,792   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,794   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,797   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,800   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,802   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,805   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,811   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,813   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-04-19T13:47:49,815   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,842   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:49,845   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-04-19T13:47:49,846   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-04-19T13:47:49,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-04-19T13:47:49,867   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-04-19T13:47:49,869   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-04-19T13:47:49,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-04-19T13:47:49,919   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-04-19T13:47:49,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-04-19T13:47:49,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-04-19T13:47:49,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-04-19T13:47:49,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-04-19T13:47:49,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-04-19T13:47:49,973   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-04-19T13:47:49,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-04-19T13:47:49,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-04-19T13:47:50,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-04-19T13:47:50,025   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-04-19T13:47:50,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-04-19T13:47:50,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-04-19T13:47:50,047   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-04-19T13:47:50,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-04-19T13:47:50,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-04-19T13:47:50,077   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-04-19T13:47:50,078   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-04-19T13:47:50,080   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-04-19T13:47:50,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-04-19T13:47:50,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-04-19T13:47:50,088   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:50,094   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:50,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:50,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:50,157   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-04-19T13:47:50,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-04-19T13:47:50,164   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-04-19T13:47:50,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-04-19T13:47:50,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:50,172   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:50,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:50,223   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-04-19T13:47:50,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-04-19T13:47:50,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-04-19T13:47:50,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:50,260   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-04-19T13:47:50,262   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-04-19T13:47:50,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-04-19T13:47:50,297   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-04-19T13:47:50,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-04-19T13:47:50,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-04-19T13:47:50,332   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:50,334   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:50,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:50,339   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-04-19T13:47:50,340   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-04-19T13:47:50,342   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-04-19T13:47:50,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmolcdp.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-04-19T13:47:50,347   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-04-19T13:47:50,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-04-19T13:47:50,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-04-19T13:47:50,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-04-19T13:47:50,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-04-19T13:47:50,357   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-04-19T13:47:50,359   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-04-19T13:47:50,361   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-04-19T13:47:50,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-04-19T13:47:50,366   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-04-19T13:47:50,399   running install_egg_info
2024-04-19T13:47:50,404   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.31-py3.9.egg-info
2024-04-19T13:47:50,417   running install_scripts
2024-04-19T13:47:50,465   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.31.dist-info/WHEEL
2024-04-19T13:47:50,468   creating '/tmp/pip-wheel-j5l6h4wf/.tmp-gjzc2vlu/moleculekit-1.8.31-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-04-19T13:47:50,471   adding 'moleculekit/__init__.py'
2024-04-19T13:47:50,473   adding 'moleculekit/_version.py'
2024-04-19T13:47:50,474   adding 'moleculekit/align.py'
2024-04-19T13:47:50,790   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:50,954   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:50,960   adding 'moleculekit/bondguesser.py'
2024-04-19T13:47:51,206   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:51,215   adding 'moleculekit/config.py'
2024-04-19T13:47:51,475   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:51,649   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:51,656   adding 'moleculekit/dihedral.py'
2024-04-19T13:47:51,657   adding 'moleculekit/distance.py'
2024-04-19T13:47:51,990   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:52,003   adding 'moleculekit/home.py'
2024-04-19T13:47:52,004   adding 'moleculekit/logging.ini'
2024-04-19T13:47:52,019   adding 'moleculekit/molecule.py'
2024-04-19T13:47:52,247   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:52,256   adding 'moleculekit/opm.py'
2024-04-19T13:47:52,258   adding 'moleculekit/periodictable.py'
2024-04-19T13:47:52,259   adding 'moleculekit/pymolgraphics.py'
2024-04-19T13:47:52,261   adding 'moleculekit/rcsb.py'
2024-04-19T13:47:52,262   adding 'moleculekit/rdkitintegration.py'
2024-04-19T13:47:52,276   adding 'moleculekit/readers.py'
2024-04-19T13:47:52,889   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:53,206   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:53,218   adding 'moleculekit/util.py'
2024-04-19T13:47:53,219   adding 'moleculekit/version.py'
2024-04-19T13:47:53,221   adding 'moleculekit/viewer.py'
2024-04-19T13:47:53,222   adding 'moleculekit/vmd_wrapper'
2024-04-19T13:47:53,224   adding 'moleculekit/vmdgraphics.py'
2024-04-19T13:47:53,226   adding 'moleculekit/vmdviewer.py'
2024-04-19T13:47:53,482   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:53,496   adding 'moleculekit/writers.py'
2024-04-19T13:47:53,767   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:53,776   adding 'moleculekit/atomselect/__init__.py'
2024-04-19T13:47:53,778   adding 'moleculekit/atomselect/analyze.py'
2024-04-19T13:47:53,780   adding 'moleculekit/atomselect/atomselect.py'
2024-04-19T13:47:53,782   adding 'moleculekit/atomselect/languageparser.py'
2024-04-19T13:47:53,887   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-04-19T13:47:53,898   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-04-19T13:47:53,991   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-04-19T13:47:54,000   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-04-19T13:47:54,091   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-04-19T13:47:54,099   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-04-19T13:47:54,204   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-04-19T13:47:54,214   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-04-19T13:47:54,216   adding 'moleculekit/fileformats/__init__.py'
2024-04-19T13:47:54,221   adding 'moleculekit/fileformats/netcdf.py'
2024-04-19T13:47:54,223   adding 'moleculekit/fileformats/utils.py'
2024-04-19T13:47:54,296   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-04-19T13:47:54,303   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-04-19T13:47:54,304   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-04-19T13:47:54,306   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-04-19T13:47:54,307   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-04-19T13:47:54,312   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-04-19T13:47:54,315   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-04-19T13:47:54,379   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-04-19T13:47:54,386   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-04-19T13:47:54,388   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-04-19T13:47:54,390   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-04-19T13:47:54,391   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-04-19T13:47:54,393   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-04-19T13:47:54,394   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-04-19T13:47:54,399   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-04-19T13:47:54,405   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-04-19T13:47:54,501   adding 'moleculekit/fileformats/xtc/trr.c'
2024-04-19T13:47:54,513   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-04-19T13:47:54,514   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-04-19T13:47:54,515   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-04-19T13:47:54,606   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-04-19T13:47:54,615   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-04-19T13:47:54,616   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-04-19T13:47:54,617   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-04-19T13:47:54,619   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-04-19T13:47:54,621   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-04-19T13:47:54,623   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-04-19T13:47:54,624   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-04-19T13:47:54,625   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-04-19T13:47:54,627   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-04-19T13:47:54,634   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-04-19T13:47:54,636   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-04-19T13:47:54,638   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-04-19T13:47:54,640   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-04-19T13:47:54,642   adding 'moleculekit/interactions/__init__.py'
2024-04-19T13:47:54,930   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:55,203   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:55,215   adding 'moleculekit/interactions/interactions.py'
2024-04-19T13:47:55,502   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:55,793   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-04-19T13:47:55,896   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-04-19T13:47:55,905   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-04-19T13:47:55,998   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-04-19T13:47:56,006   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-04-19T13:47:56,100   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-04-19T13:47:56,109   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-04-19T13:47:56,202   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-04-19T13:47:56,211   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-04-19T13:47:56,300   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-04-19T13:47:56,308   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-04-19T13:47:56,310   adding 'moleculekit/pdbx/__init__.py'
2024-04-19T13:47:56,313   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-04-19T13:47:56,316   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-04-19T13:47:56,319   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-04-19T13:47:56,320   adding 'moleculekit/pdbx/reader/__init__.py'
2024-04-19T13:47:56,322   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-04-19T13:47:56,324   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-04-19T13:47:56,325   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-04-19T13:47:56,326   adding 'moleculekit/pdbx/tests/__init__.py'
2024-04-19T13:47:56,328   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-04-19T13:47:56,329   adding 'moleculekit/pdbx/writer/__init__.py'
2024-04-19T13:47:56,331   adding 'moleculekit/ply/__init__.py'
2024-04-19T13:47:56,335   adding 'moleculekit/ply/lex.py'
2024-04-19T13:47:56,347   adding 'moleculekit/ply/yacc.py'
2024-04-19T13:47:56,349   adding 'moleculekit/projections/__init__.py'
2024-04-19T13:47:56,351   adding 'moleculekit/projections/metriccoordinate.py'
2024-04-19T13:47:56,355   adding 'moleculekit/projections/metricdihedral.py'
2024-04-19T13:47:56,359   adding 'moleculekit/projections/metricdistance.py'
2024-04-19T13:47:56,361   adding 'moleculekit/projections/metricfluctuation.py'
2024-04-19T13:47:56,363   adding 'moleculekit/projections/metricgyration.py'
2024-04-19T13:47:56,366   adding 'moleculekit/projections/metricplumed2.py'
2024-04-19T13:47:56,368   adding 'moleculekit/projections/metricrmsd.py'
2024-04-19T13:47:56,370   adding 'moleculekit/projections/metricsasa.py'
2024-04-19T13:47:56,372   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-04-19T13:47:56,374   adding 'moleculekit/projections/metricshell.py'
2024-04-19T13:47:56,376   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-04-19T13:47:56,377   adding 'moleculekit/projections/metrictmscore.py'
2024-04-19T13:47:56,379   adding 'moleculekit/projections/projection.py'
2024-04-19T13:47:56,380   adding 'moleculekit/projections/util.py'
2024-04-19T13:47:56,382   adding 'moleculekit/share/ALA.cif'
2024-04-19T13:47:56,384   adding 'moleculekit/share/backbone.cif'
2024-04-19T13:47:57,689   adding 'moleculekit/share/opm_sequences.json'
2024-04-19T13:47:57,775   adding 'moleculekit/share/atomselect/atomselect.json'
2024-04-19T13:47:57,781   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-04-19T13:47:57,782   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-04-19T13:47:57,783   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-04-19T13:47:57,784   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-04-19T13:47:57,785   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-04-19T13:47:57,786   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-04-19T13:47:57,788   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-04-19T13:47:57,789   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-04-19T13:47:57,790   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-04-19T13:47:57,791   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-04-19T13:47:57,793   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-04-19T13:47:57,794   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-04-19T13:47:57,795   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-04-19T13:47:57,797   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-04-19T13:47:57,799   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-04-19T13:47:57,800   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-04-19T13:47:57,801   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-04-19T13:47:57,803   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-04-19T13:47:57,804   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-04-19T13:47:57,805   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-04-19T13:47:57,806   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-04-19T13:47:57,808   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-04-19T13:47:57,809   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-04-19T13:47:57,810   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-04-19T13:47:57,811   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-04-19T13:47:57,812   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-04-19T13:47:57,814   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-04-19T13:47:57,815   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-04-19T13:47:57,816   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-04-19T13:47:57,818   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-04-19T13:47:57,819   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-04-19T13:47:57,820   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-04-19T13:47:57,822   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-04-19T13:47:57,823   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-04-19T13:47:57,824   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-04-19T13:47:57,826   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-04-19T13:47:57,828   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-04-19T13:47:57,829   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-04-19T13:47:57,830   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-04-19T13:47:57,832   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-04-19T13:47:57,834   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-04-19T13:47:57,835   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-04-19T13:47:57,837   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-04-19T13:47:57,839   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-04-19T13:47:57,840   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-04-19T13:47:57,842   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-04-19T13:47:57,844   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-04-19T13:47:57,845   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-04-19T13:47:57,847   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-04-19T13:47:57,848   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-04-19T13:47:57,849   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-04-19T13:47:57,850   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-04-19T13:47:57,852   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-04-19T13:47:57,854   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-04-19T13:47:57,856   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-04-19T13:47:57,857   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-04-19T13:47:57,859   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-04-19T13:47:57,860   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-04-19T13:47:57,863   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-04-19T13:47:57,864   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-04-19T13:47:57,866   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-04-19T13:47:57,867   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-04-19T13:47:57,868   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-04-19T13:47:57,869   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-04-19T13:47:57,871   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-04-19T13:47:57,872   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-04-19T13:47:57,874   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-04-19T13:47:57,875   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-04-19T13:47:57,876   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-04-19T13:47:57,878   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-04-19T13:47:57,879   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-04-19T13:47:57,880   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-04-19T13:47:57,881   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-04-19T13:47:57,883   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-04-19T13:47:57,884   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-04-19T13:47:57,886   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-04-19T13:47:57,889   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-04-19T13:47:57,890   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-04-19T13:47:57,891   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-04-19T13:47:57,893   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-04-19T13:47:57,895   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-04-19T13:47:57,896   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-04-19T13:47:57,898   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-04-19T13:47:57,899   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-04-19T13:47:57,901   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-04-19T13:47:57,902   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-04-19T13:47:57,903   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-04-19T13:47:57,905   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-04-19T13:47:57,906   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-04-19T13:47:57,907   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-04-19T13:47:57,909   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-04-19T13:47:57,910   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-04-19T13:47:57,911   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-04-19T13:47:57,913   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-04-19T13:47:57,914   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-04-19T13:47:57,916   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-04-19T13:47:57,918   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-04-19T13:47:57,919   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-04-19T13:47:57,921   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-04-19T13:47:57,922   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-04-19T13:47:57,923   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-04-19T13:47:57,925   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-04-19T13:47:57,926   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-04-19T13:47:57,928   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-04-19T13:47:57,929   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-04-19T13:47:57,932   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-04-19T13:47:57,934   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-04-19T13:47:57,935   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-04-19T13:47:57,940   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-04-19T13:47:57,941   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-04-19T13:47:57,943   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-04-19T13:47:57,948   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-04-19T13:47:57,950   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-04-19T13:47:57,951   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-04-19T13:47:57,952   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-04-19T13:47:57,954   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-04-19T13:47:57,955   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-04-19T13:47:57,956   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-04-19T13:47:57,957   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-04-19T13:47:57,959   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-04-19T13:47:57,960   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-04-19T13:47:57,961   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-04-19T13:47:57,962   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-04-19T13:47:57,963   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-04-19T13:47:57,965   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-04-19T13:47:57,966   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-04-19T13:47:57,967   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-04-19T13:47:57,968   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-04-19T13:47:57,970   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-04-19T13:47:57,971   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-04-19T13:47:57,972   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-04-19T13:47:57,973   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-04-19T13:47:57,975   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-04-19T13:47:57,976   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-04-19T13:47:57,977   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-04-19T13:47:57,978   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-04-19T13:47:57,979   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-04-19T13:47:57,981   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-04-19T13:47:57,982   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-04-19T13:47:57,983   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-04-19T13:47:57,985   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-04-19T13:47:57,986   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-04-19T13:47:57,987   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-04-19T13:47:57,988   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-04-19T13:47:57,989   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-04-19T13:47:57,990   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-04-19T13:47:57,992   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-04-19T13:47:57,993   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-04-19T13:47:57,994   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-04-19T13:47:57,995   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-04-19T13:47:57,997   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-04-19T13:47:57,998   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-04-19T13:47:58,000   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-04-19T13:47:58,001   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-04-19T13:47:58,002   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-04-19T13:47:58,003   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-04-19T13:47:58,005   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-04-19T13:47:58,006   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-04-19T13:47:58,007   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-04-19T13:47:58,009   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-04-19T13:47:58,010   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-04-19T13:47:58,011   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-04-19T13:47:58,012   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-04-19T13:47:58,013   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-04-19T13:47:58,016   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-04-19T13:47:58,018   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-04-19T13:47:58,020   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-04-19T13:47:58,021   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-04-19T13:47:58,023   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-04-19T13:47:58,025   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-04-19T13:47:58,026   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-04-19T13:47:58,027   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-04-19T13:47:58,029   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-04-19T13:47:58,030   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-04-19T13:47:58,031   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-04-19T13:47:58,034   adding 'moleculekit/smallmol/__init__.py'
2024-04-19T13:47:58,039   adding 'moleculekit/smallmol/smallmol.py'
2024-04-19T13:47:58,041   adding 'moleculekit/smallmol/smallmolcdp.py'
2024-04-19T13:47:58,044   adding 'moleculekit/smallmol/smallmollib.py'
2024-04-19T13:47:58,046   adding 'moleculekit/smallmol/test_smallmol.py'
2024-04-19T13:47:58,048   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-04-19T13:47:58,050   adding 'moleculekit/smallmol/util.py'
2024-04-19T13:47:58,051   adding 'moleculekit/smallmol/tools/__init__.py'
2024-04-19T13:47:58,053   adding 'moleculekit/smallmol/tools/clustering.py'
2024-04-19T13:47:58,055   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-04-19T13:47:58,056   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-04-19T13:47:58,148   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-04-19T13:47:58,156   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-04-19T13:47:58,158   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-04-19T13:47:58,159   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-04-19T13:47:58,177   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-04-19T13:47:58,180   adding 'moleculekit/tools/__init__.py'
2024-04-19T13:47:58,182   adding 'moleculekit/tools/atomtyper.py'
2024-04-19T13:47:58,184   adding 'moleculekit/tools/autosegment.py'
2024-04-19T13:47:58,186   adding 'moleculekit/tools/crystalpacking.py'
2024-04-19T13:47:58,190   adding 'moleculekit/tools/detect.py'
2024-04-19T13:47:58,192   adding 'moleculekit/tools/docking.py'
2024-04-19T13:47:58,194   adding 'moleculekit/tools/graphalignment.py'
2024-04-19T13:47:58,195   adding 'moleculekit/tools/hhblitsprofile.py'
2024-04-19T13:47:58,197   adding 'moleculekit/tools/modelling.py'
2024-04-19T13:47:58,198   adding 'moleculekit/tools/moleculechecks.py'
2024-04-19T13:47:58,205   adding 'moleculekit/tools/preparation.py'
2024-04-19T13:47:58,207   adding 'moleculekit/tools/preparation_customres.py'
2024-04-19T13:47:58,210   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-04-19T13:47:58,212   adding 'moleculekit/tools/voxeldescriptors.py'
2024-04-19T13:47:58,214   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-04-19T13:47:58,216   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-04-19T13:47:58,309   adding 'moleculekit/wrapping/wrapping.cpp'
2024-04-19T13:47:58,318   adding 'moleculekit/wrapping/wrapping.pyx'
2024-04-19T13:47:58,320   adding 'moleculekit-1.8.31.dist-info/LICENSE'
2024-04-19T13:47:58,321   adding 'moleculekit-1.8.31.dist-info/METADATA'
2024-04-19T13:47:58,322   adding 'moleculekit-1.8.31.dist-info/WHEEL'
2024-04-19T13:47:58,323   adding 'moleculekit-1.8.31.dist-info/top_level.txt'
2024-04-19T13:47:58,329   adding 'moleculekit-1.8.31.dist-info/RECORD'
2024-04-19T13:47:58,497   removing build/bdist.linux-armv7l/wheel
2024-04-19T13:47:58,793   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-04-19T13:47:59,134   Created wheel for moleculekit: filename=moleculekit-1.8.31-cp39-cp39-linux_armv7l.whl size=14905233 sha256=0f5cd707ec1b6d1a5e86c8fb1763866bc13d430d94662be1dfa4d74044bfe743
2024-04-19T13:47:59,135   Stored in directory: /tmp/pip-ephem-wheel-cache-fofh34iu/wheels/6b/63/0e/9a3962bbb46bbfa9b881d69030bc60ced9e61a733df1eda892
2024-04-19T13:47:59,163 Successfully built moleculekit
2024-04-19T13:47:59,549 Removed build tracker: '/tmp/pip-build-tracker-znftg8qa'