2024-04-20T23:12:05,004 Created temporary directory: /tmp/pip-build-tracker-bgvyy0hc
2024-04-20T23:12:05,006 Initialized build tracking at /tmp/pip-build-tracker-bgvyy0hc
2024-04-20T23:12:05,006 Created build tracker: /tmp/pip-build-tracker-bgvyy0hc
2024-04-20T23:12:05,006 Entered build tracker: /tmp/pip-build-tracker-bgvyy0hc
2024-04-20T23:12:05,007 Created temporary directory: /tmp/pip-wheel-yfvvcqj_
2024-04-20T23:12:05,011 Created temporary directory: /tmp/pip-ephem-wheel-cache-u29_1k0k
2024-04-20T23:12:05,033 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-04-20T23:12:05,036 2 location(s) to search for versions of pub-worm:
2024-04-20T23:12:05,036 * https://pypi.org/simple/pub-worm/
2024-04-20T23:12:05,036 * https://www.piwheels.org/simple/pub-worm/
2024-04-20T23:12:05,037 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/
2024-04-20T23:12:05,038 Getting page https://pypi.org/simple/pub-worm/
2024-04-20T23:12:05,039 Found index url https://pypi.org/simple/
2024-04-20T23:12:05,252 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json
2024-04-20T23:12:05,256   Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1
2024-04-20T23:12:05,257   Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1
2024-04-20T23:12:05,258   Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2
2024-04-20T23:12:05,258   Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3
2024-04-20T23:12:05,259   Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4
2024-04-20T23:12:05,260   Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5
2024-04-20T23:12:05,260   Found link https://files.pythonhosted.org/packages/80/a0/1ce94f51ef16d83a09dea4f1985b068452c7880801597bd3eb82efd056fc/pub_worm-0.1.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.6
2024-04-20T23:12:05,261   Found link https://files.pythonhosted.org/packages/a3/21/a1cd9d1377b513ca7bb426346eb849aa4c84f3b3a3e1d80c0c7b05585d92/pub_worm-0.1.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.7
2024-04-20T23:12:05,262   Found link https://files.pythonhosted.org/packages/8f/fc/a0c2da18b286317e2843459c01336317cfeaa46efe28b278201968d1176d/pub_worm-0.1.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.8
2024-04-20T23:12:05,262   Found link https://files.pythonhosted.org/packages/05/8b/338f3714f1fa9c96e6eb4161453ee1686e7e852c3e568f53de43d9181cba/pub_worm-0.1.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.9
2024-04-20T23:12:05,263   Found link https://files.pythonhosted.org/packages/97/77/c5713bb989282f6cc978673a6444be453c991049862f200a583aae8061de/pub_worm-0.2.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.0
2024-04-20T23:12:05,263   Found link https://files.pythonhosted.org/packages/ba/54/2d9a593a5d99fea472983a809a8764698e89d7e9336eb4dece805bb685d1/pub_worm-0.2.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.1
2024-04-20T23:12:05,264   Found link https://files.pythonhosted.org/packages/da/24/bc0ded99393b36c2a10169df8df556b1ffa4efbcb6cc88c6d0d1245a4490/pub_worm-0.2.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.2
2024-04-20T23:12:05,265   Found link https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.3
2024-04-20T23:12:05,265   Found link https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.4
2024-04-20T23:12:05,266   Found link https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.5
2024-04-20T23:12:05,267   Found link https://files.pythonhosted.org/packages/7d/07/f0b969d2ecfe9daa5682c4565ed168d28aa1e45dff044a102bdb549c2cba/pub_worm-0.2.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.6
2024-04-20T23:12:05,268 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/
2024-04-20T23:12:05,268 Getting page https://www.piwheels.org/simple/pub-worm/
2024-04-20T23:12:05,269 Found index url https://www.piwheels.org/simple/
2024-04-20T23:12:05,430 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html
2024-04-20T23:12:05,435   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.5-py3-none-any.whl#sha256=6372364213ad9038155851d20d7145b7fa44b8664abf2d718da4c2377fc3b56e (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,435   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.4-py3-none-any.whl#sha256=d426fb6e260eb1588f75b25281a6d726d740a9c88f34e8ffd0f0bbcd1e98acbc (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,436   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.3-py3-none-any.whl#sha256=08bbce548fac3ce388fa51fdcbf0a4b59a27180b5871a37d0bf5ced9c84e903a (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,436   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.2-py3-none-any.whl#sha256=1f5f09a3598f66e5a30431d4c93cd6b581049d7829a791820ecb783ddad91c19 (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,437   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.1-py3-none-any.whl#sha256=2cd541418ccbf9158ab7e18b187c7d7bc297928fbb5f4817f84f67552fd20c2a (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,437   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.0-py3-none-any.whl#sha256=0fe4aa97fb602755d99717699395e7014f676d4ee4572930652a00f5b0407400 (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,438   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.9-py3-none-any.whl#sha256=d36153a6672446b80a3ad4a128123f60f80f8f1444122936363fa80165d19f7a (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,438   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.8-py3-none-any.whl#sha256=ad3c0117baeaa8c04f86149fa0dd71f6ea65d60213da6d6b570d0157572afe2c (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,439   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.7-py3-none-any.whl#sha256=5b88eaacc4effbdf9cc173c4732a2ac60eac0a420ccac19ba626a2be72b7f12a (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,439   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.6-py3-none-any.whl#sha256=b18fb87705630077e0c3647f52c14b61e3b0ced91b1628a96bd5406c384f38ea (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,440   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.5-py3-none-any.whl#sha256=194f3e97c1023b9ba1e3ada69ff1de5c0883d9bf2e6c11d2b6173cf86f7d23ec (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,441   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.4-py3-none-any.whl#sha256=84de546e9b8e73c3cdbccb497a05d28c60537eda48d1b1fdb879be94e3fe3f27 (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,441   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.3-py3-none-any.whl#sha256=c93d251f88dea0862a7a5878ea9d242ca2a3dfc38922c876268f91def0e576c1 (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,442   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.2-py3-none-any.whl#sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,442   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,443   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/)
2024-04-20T23:12:05,443 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/
2024-04-20T23:12:05,444 Skipping link: not a file: https://pypi.org/simple/pub-worm/
2024-04-20T23:12:05,464 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates
2024-04-20T23:12:05,482 Collecting pub-worm==0.2.6
2024-04-20T23:12:05,484   Created temporary directory: /tmp/pip-unpack-v2nf09gl
2024-04-20T23:12:05,697   Downloading pub_worm-0.2.6.tar.gz (390 kB)
2024-04-20T23:12:05,898   Added pub-worm==0.2.6 from https://files.pythonhosted.org/packages/7d/07/f0b969d2ecfe9daa5682c4565ed168d28aa1e45dff044a102bdb549c2cba/pub_worm-0.2.6.tar.gz to build tracker '/tmp/pip-build-tracker-bgvyy0hc'
2024-04-20T23:12:05,900   Running setup.py (path:/tmp/pip-wheel-yfvvcqj_/pub-worm_9a235d50c15742f996a2aee5db24f70c/setup.py) egg_info for package pub-worm
2024-04-20T23:12:05,901   Created temporary directory: /tmp/pip-pip-egg-info-yaz_204v
2024-04-20T23:12:05,902   Preparing metadata (setup.py): started
2024-04-20T23:12:05,903   Running command python setup.py egg_info
2024-04-20T23:12:06,962   running egg_info
2024-04-20T23:12:06,964   creating /tmp/pip-pip-egg-info-yaz_204v/pub_worm.egg-info
2024-04-20T23:12:06,989   writing /tmp/pip-pip-egg-info-yaz_204v/pub_worm.egg-info/PKG-INFO
2024-04-20T23:12:06,994   writing dependency_links to /tmp/pip-pip-egg-info-yaz_204v/pub_worm.egg-info/dependency_links.txt
2024-04-20T23:12:06,996   writing requirements to /tmp/pip-pip-egg-info-yaz_204v/pub_worm.egg-info/requires.txt
2024-04-20T23:12:06,998   writing top-level names to /tmp/pip-pip-egg-info-yaz_204v/pub_worm.egg-info/top_level.txt
2024-04-20T23:12:06,999   writing manifest file '/tmp/pip-pip-egg-info-yaz_204v/pub_worm.egg-info/SOURCES.txt'
2024-04-20T23:12:07,084   reading manifest file '/tmp/pip-pip-egg-info-yaz_204v/pub_worm.egg-info/SOURCES.txt'
2024-04-20T23:12:07,086   reading manifest template 'MANIFEST.in'
2024-04-20T23:12:07,088   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-04-20T23:12:07,089   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-04-20T23:12:07,090   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-04-20T23:12:07,092   writing manifest file '/tmp/pip-pip-egg-info-yaz_204v/pub_worm.egg-info/SOURCES.txt'
2024-04-20T23:12:07,199   Preparing metadata (setup.py): finished with status 'done'
2024-04-20T23:12:07,203   Source in /tmp/pip-wheel-yfvvcqj_/pub-worm_9a235d50c15742f996a2aee5db24f70c has version 0.2.6, which satisfies requirement pub-worm==0.2.6 from https://files.pythonhosted.org/packages/7d/07/f0b969d2ecfe9daa5682c4565ed168d28aa1e45dff044a102bdb549c2cba/pub_worm-0.2.6.tar.gz
2024-04-20T23:12:07,204   Removed pub-worm==0.2.6 from https://files.pythonhosted.org/packages/7d/07/f0b969d2ecfe9daa5682c4565ed168d28aa1e45dff044a102bdb549c2cba/pub_worm-0.2.6.tar.gz from build tracker '/tmp/pip-build-tracker-bgvyy0hc'
2024-04-20T23:12:07,209 Created temporary directory: /tmp/pip-unpack-d6ebp3oi
2024-04-20T23:12:07,209 Created temporary directory: /tmp/pip-unpack-kjot0n1u
2024-04-20T23:12:07,213 Building wheels for collected packages: pub-worm
2024-04-20T23:12:07,217   Created temporary directory: /tmp/pip-wheel-wv3mzxqg
2024-04-20T23:12:07,218   Building wheel for pub-worm (setup.py): started
2024-04-20T23:12:07,219   Destination directory: /tmp/pip-wheel-wv3mzxqg
2024-04-20T23:12:07,219   Running command python setup.py bdist_wheel
2024-04-20T23:12:08,256   running bdist_wheel
2024-04-20T23:12:08,354   running build
2024-04-20T23:12:08,355   running build_py
2024-04-20T23:12:08,383   creating build
2024-04-20T23:12:08,383   creating build/lib
2024-04-20T23:12:08,384   creating build/lib/tests
2024-04-20T23:12:08,385   copying tests/__init__.py -> build/lib/tests
2024-04-20T23:12:08,387   creating build/lib/pub_worm
2024-04-20T23:12:08,388   copying pub_worm/__init__.py -> build/lib/pub_worm
2024-04-20T23:12:08,390   creating build/lib/tests/ncbi
2024-04-20T23:12:08,391   copying tests/ncbi/test_entreze_api.py -> build/lib/tests/ncbi
2024-04-20T23:12:08,393   copying tests/ncbi/__init__.py -> build/lib/tests/ncbi
2024-04-20T23:12:08,395   creating build/lib/tests/impact_factor
2024-04-20T23:12:08,396   copying tests/impact_factor/test_get_impact_factor.py -> build/lib/tests/impact_factor
2024-04-20T23:12:08,398   copying tests/impact_factor/__init__.py -> build/lib/tests/impact_factor
2024-04-20T23:12:08,400   creating build/lib/tests/wormbase
2024-04-20T23:12:08,401   copying tests/wormbase/test_wormbase_api.py -> build/lib/tests/wormbase
2024-04-20T23:12:08,403   copying tests/wormbase/__init__.py -> build/lib/tests/wormbase
2024-04-20T23:12:08,405   creating build/lib/pub_worm/ncbi
2024-04-20T23:12:08,405   copying pub_worm/ncbi/entreze_post.py -> build/lib/pub_worm/ncbi
2024-04-20T23:12:08,408   copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi
2024-04-20T23:12:08,410   copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi
2024-04-20T23:12:08,412   creating build/lib/pub_worm/impact_factor
2024-04-20T23:12:08,413   copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor
2024-04-20T23:12:08,415   copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor
2024-04-20T23:12:08,417   creating build/lib/pub_worm/wormbase
2024-04-20T23:12:08,418   copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase
2024-04-20T23:12:08,420   copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase
2024-04-20T23:12:08,421   copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase
2024-04-20T23:12:08,423   running egg_info
2024-04-20T23:12:08,480   writing pub_worm.egg-info/PKG-INFO
2024-04-20T23:12:08,483   writing dependency_links to pub_worm.egg-info/dependency_links.txt
2024-04-20T23:12:08,484   writing requirements to pub_worm.egg-info/requires.txt
2024-04-20T23:12:08,485   writing top-level names to pub_worm.egg-info/top_level.txt
2024-04-20T23:12:08,518   reading manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-04-20T23:12:08,521   reading manifest template 'MANIFEST.in'
2024-04-20T23:12:08,522   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-04-20T23:12:08,522   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-04-20T23:12:08,523   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-04-20T23:12:08,525   writing manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-04-20T23:12:08,527   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration.
2024-04-20T23:12:08,528   !!

2024-04-20T23:12:08,529           ********************************************************************************
2024-04-20T23:12:08,530           ############################
2024-04-20T23:12:08,530           # Package would be ignored #
2024-04-20T23:12:08,530           ############################
2024-04-20T23:12:08,531           Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1],
2024-04-20T23:12:08,531           but it is absent from setuptools' `packages` configuration.

2024-04-20T23:12:08,532           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-20T23:12:08,533           package, please make sure that 'pub_worm.impact_factor.data' is explicitly added
2024-04-20T23:12:08,533           to the `packages` configuration field.

2024-04-20T23:12:08,534           Alternatively, you can also rely on setuptools' discovery methods
2024-04-20T23:12:08,534           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-20T23:12:08,535           instead of `find_packages(...)`/`find:`).

2024-04-20T23:12:08,536           You can read more about "package discovery" on setuptools documentation page:

2024-04-20T23:12:08,537           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-20T23:12:08,537           If you don't want 'pub_worm.impact_factor.data' to be distributed and are
2024-04-20T23:12:08,538           already explicitly excluding 'pub_worm.impact_factor.data' via
2024-04-20T23:12:08,538           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-20T23:12:08,539           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-20T23:12:08,539           combination with a more fine grained `package-data` configuration.

2024-04-20T23:12:08,540           You can read more about "package data files" on setuptools documentation page:

2024-04-20T23:12:08,541           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-20T23:12:08,543           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-20T23:12:08,543                 even if it does not contain any `.py` files.
2024-04-20T23:12:08,544                 On the other hand, currently there is no concept of package data
2024-04-20T23:12:08,545                 directory, all directories are treated like packages.
2024-04-20T23:12:08,545           ********************************************************************************

2024-04-20T23:12:08,547   !!
2024-04-20T23:12:08,547     check.warn(importable)
2024-04-20T23:12:08,548   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration.
2024-04-20T23:12:08,549   !!

2024-04-20T23:12:08,550           ********************************************************************************
2024-04-20T23:12:08,551           ############################
2024-04-20T23:12:08,552           # Package would be ignored #
2024-04-20T23:12:08,552           ############################
2024-04-20T23:12:08,553           Python recognizes 'pub_worm.wormbase.data' as an importable package[^1],
2024-04-20T23:12:08,554           but it is absent from setuptools' `packages` configuration.

2024-04-20T23:12:08,555           This leads to an ambiguous overall configuration. If you want to distribute this
2024-04-20T23:12:08,555           package, please make sure that 'pub_worm.wormbase.data' is explicitly added
2024-04-20T23:12:08,556           to the `packages` configuration field.

2024-04-20T23:12:08,557           Alternatively, you can also rely on setuptools' discovery methods
2024-04-20T23:12:08,558           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-04-20T23:12:08,559           instead of `find_packages(...)`/`find:`).

2024-04-20T23:12:08,560           You can read more about "package discovery" on setuptools documentation page:

2024-04-20T23:12:08,561           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-04-20T23:12:08,567           If you don't want 'pub_worm.wormbase.data' to be distributed and are
2024-04-20T23:12:08,568           already explicitly excluding 'pub_worm.wormbase.data' via
2024-04-20T23:12:08,572           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-04-20T23:12:08,575           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-04-20T23:12:08,576           combination with a more fine grained `package-data` configuration.

2024-04-20T23:12:08,577           You can read more about "package data files" on setuptools documentation page:

2024-04-20T23:12:08,578           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-04-20T23:12:08,579           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-04-20T23:12:08,580                 even if it does not contain any `.py` files.
2024-04-20T23:12:08,580                 On the other hand, currently there is no concept of package data
2024-04-20T23:12:08,581                 directory, all directories are treated like packages.
2024-04-20T23:12:08,581           ********************************************************************************

2024-04-20T23:12:08,582   !!
2024-04-20T23:12:08,582     check.warn(importable)
2024-04-20T23:12:08,583   creating build/lib/pub_worm/impact_factor/data
2024-04-20T23:12:08,583   copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data
2024-04-20T23:12:08,584   creating build/lib/pub_worm/wormbase/data
2024-04-20T23:12:08,584   copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data
2024-04-20T23:12:08,585   copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data
2024-04-20T23:12:08,586   copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data
2024-04-20T23:12:08,612   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-04-20T23:12:08,613   !!

2024-04-20T23:12:08,614           ********************************************************************************
2024-04-20T23:12:08,614           Please avoid running ``setup.py`` directly.
2024-04-20T23:12:08,615           Instead, use pypa/build, pypa/installer or other
2024-04-20T23:12:08,615           standards-based tools.

2024-04-20T23:12:08,616           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-04-20T23:12:08,617           ********************************************************************************

2024-04-20T23:12:08,618   !!
2024-04-20T23:12:08,618     self.initialize_options()
2024-04-20T23:12:08,638   installing to build/bdist.linux-armv7l/wheel
2024-04-20T23:12:08,639   running install
2024-04-20T23:12:08,662   running install_lib
2024-04-20T23:12:08,688   creating build/bdist.linux-armv7l
2024-04-20T23:12:08,688   creating build/bdist.linux-armv7l/wheel
2024-04-20T23:12:08,690   creating build/bdist.linux-armv7l/wheel/tests
2024-04-20T23:12:08,691   creating build/bdist.linux-armv7l/wheel/tests/ncbi
2024-04-20T23:12:08,692   copying build/lib/tests/ncbi/test_entreze_api.py -> build/bdist.linux-armv7l/wheel/tests/ncbi
2024-04-20T23:12:08,694   copying build/lib/tests/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/tests/ncbi
2024-04-20T23:12:08,697   creating build/bdist.linux-armv7l/wheel/tests/impact_factor
2024-04-20T23:12:08,698   copying build/lib/tests/impact_factor/test_get_impact_factor.py -> build/bdist.linux-armv7l/wheel/tests/impact_factor
2024-04-20T23:12:08,700   copying build/lib/tests/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/tests/impact_factor
2024-04-20T23:12:08,702   creating build/bdist.linux-armv7l/wheel/tests/wormbase
2024-04-20T23:12:08,703   copying build/lib/tests/wormbase/test_wormbase_api.py -> build/bdist.linux-armv7l/wheel/tests/wormbase
2024-04-20T23:12:08,705   copying build/lib/tests/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/tests/wormbase
2024-04-20T23:12:08,707   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2024-04-20T23:12:08,709   creating build/bdist.linux-armv7l/wheel/pub_worm
2024-04-20T23:12:08,710   creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-04-20T23:12:08,711   copying build/lib/pub_worm/ncbi/entreze_post.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-04-20T23:12:08,713   copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-04-20T23:12:08,715   copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-04-20T23:12:08,717   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor
2024-04-20T23:12:08,718   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data
2024-04-20T23:12:08,719   copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data
2024-04-20T23:12:08,748   copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor
2024-04-20T23:12:08,750   copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor
2024-04-20T23:12:08,752   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-04-20T23:12:08,754   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-04-20T23:12:08,755   copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-04-20T23:12:08,757   copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-04-20T23:12:08,758   copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-04-20T23:12:08,760   copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-04-20T23:12:08,762   copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-04-20T23:12:08,763   copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-04-20T23:12:08,766   copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm
2024-04-20T23:12:08,767   running install_egg_info
2024-04-20T23:12:08,798   Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/pub_worm-0.2.6-py3.11.egg-info
2024-04-20T23:12:08,809   running install_scripts
2024-04-20T23:12:08,821   creating build/bdist.linux-armv7l/wheel/pub_worm-0.2.6.dist-info/WHEEL
2024-04-20T23:12:08,823   creating '/tmp/pip-wheel-wv3mzxqg/pub_worm-0.2.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-04-20T23:12:08,826   adding 'pub_worm/__init__.py'
2024-04-20T23:12:08,827   adding 'pub_worm/impact_factor/__init__.py'
2024-04-20T23:12:08,829   adding 'pub_worm/impact_factor/impact_factor_lookup.py'
2024-04-20T23:12:08,993   adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv'
2024-04-20T23:12:09,003   adding 'pub_worm/ncbi/__init__.py'
2024-04-20T23:12:09,005   adding 'pub_worm/ncbi/entreze_api.py'
2024-04-20T23:12:09,007   adding 'pub_worm/ncbi/entreze_post.py'
2024-04-20T23:12:09,009   adding 'pub_worm/wormbase/__init__.py'
2024-04-20T23:12:09,010   adding 'pub_worm/wormbase/to_csv_helpers.py'
2024-04-20T23:12:09,012   adding 'pub_worm/wormbase/wormbase_api.py'
2024-04-20T23:12:09,014   adding 'pub_worm/wormbase/data/wormbase_field_gene.json'
2024-04-20T23:12:09,015   adding 'pub_worm/wormbase/data/wormbase_field_paper.json'
2024-04-20T23:12:09,016   adding 'pub_worm/wormbase/data/wormbase_widget_gene.json'
2024-04-20T23:12:09,018   adding 'tests/__init__.py'
2024-04-20T23:12:09,020   adding 'tests/impact_factor/__init__.py'
2024-04-20T23:12:09,021   adding 'tests/impact_factor/test_get_impact_factor.py'
2024-04-20T23:12:09,023   adding 'tests/ncbi/__init__.py'
2024-04-20T23:12:09,024   adding 'tests/ncbi/test_entreze_api.py'
2024-04-20T23:12:09,026   adding 'tests/wormbase/__init__.py'
2024-04-20T23:12:09,027   adding 'tests/wormbase/test_wormbase_api.py'
2024-04-20T23:12:09,028   adding 'pub_worm-0.2.6.dist-info/METADATA'
2024-04-20T23:12:09,029   adding 'pub_worm-0.2.6.dist-info/WHEEL'
2024-04-20T23:12:09,030   adding 'pub_worm-0.2.6.dist-info/top_level.txt'
2024-04-20T23:12:09,031   adding 'pub_worm-0.2.6.dist-info/RECORD'
2024-04-20T23:12:09,037   removing build/bdist.linux-armv7l/wheel
2024-04-20T23:12:09,157   Building wheel for pub-worm (setup.py): finished with status 'done'
2024-04-20T23:12:09,164   Created wheel for pub-worm: filename=pub_worm-0.2.6-py3-none-any.whl size=395251 sha256=79f23813bcf27f437dd33b20d97761a1124ac1aa5aa80ff78557d4a6d78d0ff4
2024-04-20T23:12:09,165   Stored in directory: /tmp/pip-ephem-wheel-cache-u29_1k0k/wheels/ba/d5/f5/8767dd57961e2bfb38861f1191e1eb345c59d5e2002d6cb20b
2024-04-20T23:12:09,175 Successfully built pub-worm
2024-04-20T23:12:09,187 Removed build tracker: '/tmp/pip-build-tracker-bgvyy0hc'