2024-04-21T18:42:26,350 Created temporary directory: /tmp/pip-build-tracker-_hf7kxzk 2024-04-21T18:42:26,351 Initialized build tracking at /tmp/pip-build-tracker-_hf7kxzk 2024-04-21T18:42:26,352 Created build tracker: /tmp/pip-build-tracker-_hf7kxzk 2024-04-21T18:42:26,352 Entered build tracker: /tmp/pip-build-tracker-_hf7kxzk 2024-04-21T18:42:26,353 Created temporary directory: /tmp/pip-wheel-lurs_vxf 2024-04-21T18:42:26,356 Created temporary directory: /tmp/pip-ephem-wheel-cache-s626rnk7 2024-04-21T18:42:26,381 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-21T18:42:26,385 2 location(s) to search for versions of mddtoolkit: 2024-04-21T18:42:26,385 * https://pypi.org/simple/mddtoolkit/ 2024-04-21T18:42:26,385 * https://www.piwheels.org/simple/mddtoolkit/ 2024-04-21T18:42:26,386 Fetching project page and analyzing links: https://pypi.org/simple/mddtoolkit/ 2024-04-21T18:42:26,386 Getting page https://pypi.org/simple/mddtoolkit/ 2024-04-21T18:42:26,388 Found index url https://pypi.org/simple/ 2024-04-21T18:42:26,599 Fetched page https://pypi.org/simple/mddtoolkit/ as application/vnd.pypi.simple.v1+json 2024-04-21T18:42:26,601 Skipping link: No binaries permitted for mddtoolkit: https://files.pythonhosted.org/packages/de/36/2d2deb556fef208190efd07de1d1d132d077ed1b4e4d98ce12c82e00f5a0/mddtoolkit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/mddtoolkit/) (requires-python:>=3.9) 2024-04-21T18:42:26,602 Found link https://files.pythonhosted.org/packages/d8/2f/86ce1747cfbe633e9a702c4791b55084f4297dc2088b4b7eaa661e3c4831/mddtoolkit-0.2.0.tar.gz (from https://pypi.org/simple/mddtoolkit/) (requires-python:>=3.9), version: 0.2.0 2024-04-21T18:42:26,603 Skipping link: No binaries permitted for mddtoolkit: https://files.pythonhosted.org/packages/78/2a/52a27e0ae1756d65f7fc1ef0adf59f459bf71ac69fab39a3ef265397eb9d/mddtoolkit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/mddtoolkit/) (requires-python:>=3.9) 2024-04-21T18:42:26,604 Found link https://files.pythonhosted.org/packages/b4/8f/477cc9a3e7ca95c915aa8b47d8ef13cdcef407d6a5c740c0ed9db3779c5b/mddtoolkit-0.3.0.tar.gz (from https://pypi.org/simple/mddtoolkit/) (requires-python:>=3.9), version: 0.3.0 2024-04-21T18:42:26,605 Fetching project page and analyzing links: https://www.piwheels.org/simple/mddtoolkit/ 2024-04-21T18:42:26,605 Getting page https://www.piwheels.org/simple/mddtoolkit/ 2024-04-21T18:42:26,607 Found index url https://www.piwheels.org/simple/ 2024-04-21T18:42:26,798 Fetched page https://www.piwheels.org/simple/mddtoolkit/ as text/html 2024-04-21T18:42:26,832 Skipping link: No binaries permitted for mddtoolkit: https://www.piwheels.org/simple/mddtoolkit/mddtoolkit-0.2.0-py3-none-any.whl#sha256=9c531691318200ce1c3fbaff2ca1cbe70683c2ced4c1a19b447377745fd3b18e (from https://www.piwheels.org/simple/mddtoolkit/) (requires-python:>=3.9) 2024-04-21T18:42:26,833 Skipping link: not a file: https://www.piwheels.org/simple/mddtoolkit/ 2024-04-21T18:42:26,834 Skipping link: not a file: https://pypi.org/simple/mddtoolkit/ 2024-04-21T18:42:26,852 Given no hashes to check 1 links for project 'mddtoolkit': discarding no candidates 2024-04-21T18:42:26,869 Collecting mddtoolkit==0.3.0 2024-04-21T18:42:26,872 Created temporary directory: /tmp/pip-unpack-j6wogkgm 2024-04-21T18:42:27,080 Downloading mddtoolkit-0.3.0.tar.gz (30 kB) 2024-04-21T18:42:27,177 Added mddtoolkit==0.3.0 from https://files.pythonhosted.org/packages/b4/8f/477cc9a3e7ca95c915aa8b47d8ef13cdcef407d6a5c740c0ed9db3779c5b/mddtoolkit-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-_hf7kxzk' 2024-04-21T18:42:27,180 Created temporary directory: /tmp/pip-build-env-avjbbcyq 2024-04-21T18:42:27,185 Installing build dependencies: started 2024-04-21T18:42:27,186 Running command pip subprocess to install build dependencies 2024-04-21T18:42:28,383 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-21T18:42:28,927 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-21T18:42:30,551 Collecting setuptools 2024-04-21T18:42:30,566 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-04-21T18:42:33,246 Installing collected packages: setuptools 2024-04-21T18:42:36,295 Successfully installed setuptools-69.5.1 2024-04-21T18:42:36,861 Installing build dependencies: finished with status 'done' 2024-04-21T18:42:36,864 Getting requirements to build wheel: started 2024-04-21T18:42:36,865 Running command Getting requirements to build wheel 2024-04-21T18:42:37,912 running egg_info 2024-04-21T18:42:37,915 writing src/mddtoolkit.egg-info/PKG-INFO 2024-04-21T18:42:37,919 writing dependency_links to src/mddtoolkit.egg-info/dependency_links.txt 2024-04-21T18:42:37,922 writing entry points to src/mddtoolkit.egg-info/entry_points.txt 2024-04-21T18:42:37,924 writing requirements to src/mddtoolkit.egg-info/requires.txt 2024-04-21T18:42:37,926 writing top-level names to src/mddtoolkit.egg-info/top_level.txt 2024-04-21T18:42:37,947 reading manifest file 'src/mddtoolkit.egg-info/SOURCES.txt' 2024-04-21T18:42:37,952 writing manifest file 'src/mddtoolkit.egg-info/SOURCES.txt' 2024-04-21T18:42:38,066 Getting requirements to build wheel: finished with status 'done' 2024-04-21T18:42:38,075 Installing backend dependencies: started 2024-04-21T18:42:38,077 Running command pip subprocess to install backend dependencies 2024-04-21T18:42:39,482 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-21T18:42:40,031 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-21T18:42:40,730 Collecting wheel 2024-04-21T18:42:40,763 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-21T18:42:43,277 Installing collected packages: wheel 2024-04-21T18:42:43,527 Creating /tmp/pip-build-env-avjbbcyq/normal/local/bin 2024-04-21T18:42:43,530 changing mode of /tmp/pip-build-env-avjbbcyq/normal/local/bin/wheel to 755 2024-04-21T18:42:43,544 Successfully installed wheel-0.43.0 2024-04-21T18:42:44,076 Installing backend dependencies: finished with status 'done' 2024-04-21T18:42:44,078 Created temporary directory: /tmp/pip-modern-metadata-m8helk89 2024-04-21T18:42:44,081 Preparing metadata (pyproject.toml): started 2024-04-21T18:42:44,082 Running command Preparing metadata (pyproject.toml) 2024-04-21T18:42:44,933 running dist_info 2024-04-21T18:42:44,938 creating /tmp/pip-modern-metadata-m8helk89/mddtoolkit.egg-info 2024-04-21T18:42:44,942 writing /tmp/pip-modern-metadata-m8helk89/mddtoolkit.egg-info/PKG-INFO 2024-04-21T18:42:44,946 writing dependency_links to /tmp/pip-modern-metadata-m8helk89/mddtoolkit.egg-info/dependency_links.txt 2024-04-21T18:42:44,948 writing entry points to /tmp/pip-modern-metadata-m8helk89/mddtoolkit.egg-info/entry_points.txt 2024-04-21T18:42:44,949 writing requirements to /tmp/pip-modern-metadata-m8helk89/mddtoolkit.egg-info/requires.txt 2024-04-21T18:42:44,951 writing top-level names to /tmp/pip-modern-metadata-m8helk89/mddtoolkit.egg-info/top_level.txt 2024-04-21T18:42:44,952 writing manifest file '/tmp/pip-modern-metadata-m8helk89/mddtoolkit.egg-info/SOURCES.txt' 2024-04-21T18:42:44,971 reading manifest file '/tmp/pip-modern-metadata-m8helk89/mddtoolkit.egg-info/SOURCES.txt' 2024-04-21T18:42:44,976 writing manifest file '/tmp/pip-modern-metadata-m8helk89/mddtoolkit.egg-info/SOURCES.txt' 2024-04-21T18:42:44,977 creating '/tmp/pip-modern-metadata-m8helk89/mddtoolkit-0.3.0.dist-info' 2024-04-21T18:42:45,133 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-21T18:42:45,139 Source in /tmp/pip-wheel-lurs_vxf/mddtoolkit_834cd6156b7140edaf00e611ccc14efb has version 0.3.0, which satisfies requirement mddtoolkit==0.3.0 from https://files.pythonhosted.org/packages/b4/8f/477cc9a3e7ca95c915aa8b47d8ef13cdcef407d6a5c740c0ed9db3779c5b/mddtoolkit-0.3.0.tar.gz 2024-04-21T18:42:45,140 Removed mddtoolkit==0.3.0 from https://files.pythonhosted.org/packages/b4/8f/477cc9a3e7ca95c915aa8b47d8ef13cdcef407d6a5c740c0ed9db3779c5b/mddtoolkit-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-_hf7kxzk' 2024-04-21T18:42:45,146 Created temporary directory: /tmp/pip-unpack-jxyay8kx 2024-04-21T18:42:45,147 Created temporary directory: /tmp/pip-unpack-ue0_4m78 2024-04-21T18:42:45,157 Building wheels for collected packages: mddtoolkit 2024-04-21T18:42:45,162 Created temporary directory: /tmp/pip-wheel-uh4_6d28 2024-04-21T18:42:45,162 Destination directory: /tmp/pip-wheel-uh4_6d28 2024-04-21T18:42:45,164 Building wheel for mddtoolkit (pyproject.toml): started 2024-04-21T18:42:45,165 Running command Building wheel for mddtoolkit (pyproject.toml) 2024-04-21T18:42:45,933 running bdist_wheel 2024-04-21T18:42:45,949 running build 2024-04-21T18:42:45,950 running build_py 2024-04-21T18:42:45,954 creating build 2024-04-21T18:42:45,955 creating build/lib 2024-04-21T18:42:45,956 creating build/lib/diffusion_kinetics 2024-04-21T18:42:45,957 copying src/diffusion_kinetics/cli.py -> build/lib/diffusion_kinetics 2024-04-21T18:42:45,960 creating build/lib/diffusion_kinetics/pipeline 2024-04-21T18:42:45,961 copying src/diffusion_kinetics/pipeline/multi_pipeline.py -> build/lib/diffusion_kinetics/pipeline 2024-04-21T18:42:45,964 copying src/diffusion_kinetics/pipeline/__init__.py -> build/lib/diffusion_kinetics/pipeline 2024-04-21T18:42:45,965 copying src/diffusion_kinetics/pipeline/pipeline_config.py -> build/lib/diffusion_kinetics/pipeline 2024-04-21T18:42:45,968 copying src/diffusion_kinetics/pipeline/base_pipeline.py -> build/lib/diffusion_kinetics/pipeline 2024-04-21T18:42:45,970 copying src/diffusion_kinetics/pipeline/pipeline_output.py -> build/lib/diffusion_kinetics/pipeline 2024-04-21T18:42:45,971 copying src/diffusion_kinetics/pipeline/single_pipeline.py -> build/lib/diffusion_kinetics/pipeline 2024-04-21T18:42:45,974 creating build/lib/diffusion_kinetics/preprocessing 2024-04-21T18:42:45,975 copying src/diffusion_kinetics/preprocessing/calculate_experimental_results.py -> build/lib/diffusion_kinetics/preprocessing 2024-04-21T18:42:45,977 copying src/diffusion_kinetics/preprocessing/generate_inputs.py -> build/lib/diffusion_kinetics/preprocessing 2024-04-21T18:42:45,980 creating build/lib/diffusion_kinetics/utils 2024-04-21T18:42:45,981 copying src/diffusion_kinetics/utils/plot_results.py -> build/lib/diffusion_kinetics/utils 2024-04-21T18:42:45,984 copying src/diffusion_kinetics/utils/organize_x.py -> build/lib/diffusion_kinetics/utils 2024-04-21T18:42:45,986 copying src/diffusion_kinetics/utils/kinetics_dataframe.py -> build/lib/diffusion_kinetics/utils 2024-04-21T18:42:45,988 creating build/lib/diffusion_kinetics/optimization 2024-04-21T18:42:45,989 copying src/diffusion_kinetics/optimization/__init__.py -> build/lib/diffusion_kinetics/optimization 2024-04-21T18:42:45,991 copying src/diffusion_kinetics/optimization/diffusion_objective.py -> build/lib/diffusion_kinetics/optimization 2024-04-21T18:42:45,994 copying src/diffusion_kinetics/optimization/dataset.py -> build/lib/diffusion_kinetics/optimization 2024-04-21T18:42:45,996 copying src/diffusion_kinetics/optimization/diffusion_optimizer.py -> build/lib/diffusion_kinetics/optimization 2024-04-21T18:42:45,998 copying src/diffusion_kinetics/optimization/forward_model_kinetics.py -> build/lib/diffusion_kinetics/optimization 2024-04-21T18:42:46,001 copying src/diffusion_kinetics/optimization/conHe_Param.py -> build/lib/diffusion_kinetics/optimization 2024-04-21T18:42:46,002 running egg_info 2024-04-21T18:42:46,006 writing src/mddtoolkit.egg-info/PKG-INFO 2024-04-21T18:42:46,010 writing dependency_links to src/mddtoolkit.egg-info/dependency_links.txt 2024-04-21T18:42:46,012 writing entry points to src/mddtoolkit.egg-info/entry_points.txt 2024-04-21T18:42:46,013 writing requirements to src/mddtoolkit.egg-info/requires.txt 2024-04-21T18:42:46,014 writing top-level names to src/mddtoolkit.egg-info/top_level.txt 2024-04-21T18:42:46,026 reading manifest file 'src/mddtoolkit.egg-info/SOURCES.txt' 2024-04-21T18:42:46,031 writing manifest file 'src/mddtoolkit.egg-info/SOURCES.txt' 2024-04-21T18:42:46,044 installing to build/bdist.linux-armv7l/wheel 2024-04-21T18:42:46,045 running install 2024-04-21T18:42:46,069 running install_lib 2024-04-21T18:42:46,074 creating build/bdist.linux-armv7l 2024-04-21T18:42:46,074 creating build/bdist.linux-armv7l/wheel 2024-04-21T18:42:46,076 creating build/bdist.linux-armv7l/wheel/diffusion_kinetics 2024-04-21T18:42:46,078 creating build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-04-21T18:42:46,079 copying build/lib/diffusion_kinetics/pipeline/multi_pipeline.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-04-21T18:42:46,082 copying build/lib/diffusion_kinetics/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-04-21T18:42:46,085 copying build/lib/diffusion_kinetics/pipeline/pipeline_config.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-04-21T18:42:46,087 copying build/lib/diffusion_kinetics/pipeline/base_pipeline.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-04-21T18:42:46,090 copying build/lib/diffusion_kinetics/pipeline/pipeline_output.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-04-21T18:42:46,092 copying build/lib/diffusion_kinetics/pipeline/single_pipeline.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-04-21T18:42:46,095 creating build/bdist.linux-armv7l/wheel/diffusion_kinetics/preprocessing 2024-04-21T18:42:46,096 copying build/lib/diffusion_kinetics/preprocessing/calculate_experimental_results.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/preprocessing 2024-04-21T18:42:46,098 copying build/lib/diffusion_kinetics/preprocessing/generate_inputs.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/preprocessing 2024-04-21T18:42:46,101 creating build/bdist.linux-armv7l/wheel/diffusion_kinetics/utils 2024-04-21T18:42:46,102 copying build/lib/diffusion_kinetics/utils/plot_results.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/utils 2024-04-21T18:42:46,105 copying build/lib/diffusion_kinetics/utils/organize_x.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/utils 2024-04-21T18:42:46,107 copying build/lib/diffusion_kinetics/utils/kinetics_dataframe.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/utils 2024-04-21T18:42:46,110 creating build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-04-21T18:42:46,111 copying build/lib/diffusion_kinetics/optimization/__init__.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-04-21T18:42:46,114 copying build/lib/diffusion_kinetics/optimization/diffusion_objective.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-04-21T18:42:46,117 copying build/lib/diffusion_kinetics/optimization/dataset.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-04-21T18:42:46,119 copying build/lib/diffusion_kinetics/optimization/diffusion_optimizer.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-04-21T18:42:46,121 copying build/lib/diffusion_kinetics/optimization/forward_model_kinetics.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-04-21T18:42:46,124 copying build/lib/diffusion_kinetics/optimization/conHe_Param.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-04-21T18:42:46,126 copying build/lib/diffusion_kinetics/cli.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics 2024-04-21T18:42:46,127 running install_egg_info 2024-04-21T18:42:46,131 Copying src/mddtoolkit.egg-info to build/bdist.linux-armv7l/wheel/mddtoolkit-0.3.0-py3.11.egg-info 2024-04-21T18:42:46,143 running install_scripts 2024-04-21T18:42:46,160 creating build/bdist.linux-armv7l/wheel/mddtoolkit-0.3.0.dist-info/WHEEL 2024-04-21T18:42:46,163 creating '/tmp/pip-wheel-uh4_6d28/.tmp-1lnhcivv/mddtoolkit-0.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-21T18:42:46,165 adding 'diffusion_kinetics/cli.py' 2024-04-21T18:42:46,168 adding 'diffusion_kinetics/optimization/__init__.py' 2024-04-21T18:42:46,169 adding 'diffusion_kinetics/optimization/conHe_Param.py' 2024-04-21T18:42:46,170 adding 'diffusion_kinetics/optimization/dataset.py' 2024-04-21T18:42:46,172 adding 'diffusion_kinetics/optimization/diffusion_objective.py' 2024-04-21T18:42:46,174 adding 'diffusion_kinetics/optimization/diffusion_optimizer.py' 2024-04-21T18:42:46,175 adding 'diffusion_kinetics/optimization/forward_model_kinetics.py' 2024-04-21T18:42:46,177 adding 'diffusion_kinetics/pipeline/__init__.py' 2024-04-21T18:42:46,178 adding 'diffusion_kinetics/pipeline/base_pipeline.py' 2024-04-21T18:42:46,180 adding 'diffusion_kinetics/pipeline/multi_pipeline.py' 2024-04-21T18:42:46,182 adding 'diffusion_kinetics/pipeline/pipeline_config.py' 2024-04-21T18:42:46,183 adding 'diffusion_kinetics/pipeline/pipeline_output.py' 2024-04-21T18:42:46,185 adding 'diffusion_kinetics/pipeline/single_pipeline.py' 2024-04-21T18:42:46,187 adding 'diffusion_kinetics/preprocessing/calculate_experimental_results.py' 2024-04-21T18:42:46,188 adding 'diffusion_kinetics/preprocessing/generate_inputs.py' 2024-04-21T18:42:46,190 adding 'diffusion_kinetics/utils/kinetics_dataframe.py' 2024-04-21T18:42:46,191 adding 'diffusion_kinetics/utils/organize_x.py' 2024-04-21T18:42:46,193 adding 'diffusion_kinetics/utils/plot_results.py' 2024-04-21T18:42:46,196 adding 'mddtoolkit-0.3.0.dist-info/METADATA' 2024-04-21T18:42:46,197 adding 'mddtoolkit-0.3.0.dist-info/WHEEL' 2024-04-21T18:42:46,198 adding 'mddtoolkit-0.3.0.dist-info/entry_points.txt' 2024-04-21T18:42:46,199 adding 'mddtoolkit-0.3.0.dist-info/top_level.txt' 2024-04-21T18:42:46,201 adding 'mddtoolkit-0.3.0.dist-info/RECORD' 2024-04-21T18:42:46,203 removing build/bdist.linux-armv7l/wheel 2024-04-21T18:42:46,332 Building wheel for mddtoolkit (pyproject.toml): finished with status 'done' 2024-04-21T18:42:46,337 Created wheel for mddtoolkit: filename=mddtoolkit-0.3.0-py3-none-any.whl size=31139 sha256=00cfcc8a8801043dfeb93c3337a4f2fcb09852c1ed142ea28c8935a2dd7a5d3a 2024-04-21T18:42:46,338 Stored in directory: /tmp/pip-ephem-wheel-cache-s626rnk7/wheels/32/75/21/4a209839272bae559ac480fe7b3ea0502a4dd35f8c86a89c2f 2024-04-21T18:42:46,350 Successfully built mddtoolkit 2024-04-21T18:42:46,356 Removed build tracker: '/tmp/pip-build-tracker-_hf7kxzk'