2024-04-24T03:07:19,684 Created temporary directory: /tmp/pip-build-tracker-1rc9ldnz
2024-04-24T03:07:19,688 Initialized build tracking at /tmp/pip-build-tracker-1rc9ldnz
2024-04-24T03:07:19,688 Created build tracker: /tmp/pip-build-tracker-1rc9ldnz
2024-04-24T03:07:19,689 Entered build tracker: /tmp/pip-build-tracker-1rc9ldnz
2024-04-24T03:07:19,690 Created temporary directory: /tmp/pip-wheel-krup5pzm
2024-04-24T03:07:19,700 Created temporary directory: /tmp/pip-ephem-wheel-cache-13blyxdm
2024-04-24T03:07:19,756 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-04-24T03:07:19,770 2 location(s) to search for versions of gtdbtk:
2024-04-24T03:07:19,770 * https://pypi.org/simple/gtdbtk/
2024-04-24T03:07:19,770 * https://www.piwheels.org/simple/gtdbtk/
2024-04-24T03:07:19,771 Fetching project page and analyzing links: https://pypi.org/simple/gtdbtk/
2024-04-24T03:07:19,772 Getting page https://pypi.org/simple/gtdbtk/
2024-04-24T03:07:19,776 Found index url https://pypi.org/simple/
2024-04-24T03:07:19,891 Fetched page https://pypi.org/simple/gtdbtk/ as application/vnd.pypi.simple.v1+json
2024-04-24T03:07:19,926   Found link https://files.pythonhosted.org/packages/77/1d/a47e727062761ea6108b1be340d24c711131df11415d82cdb30bcb51738b/gtdbtk-0.0.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.1
2024-04-24T03:07:19,927   Found link https://files.pythonhosted.org/packages/78/fc/021b3e4fc9fc1a8d8596ccf703ee4f5abd97b496bc714a9bfc69332e913e/gtdbtk-0.0.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.2
2024-04-24T03:07:19,927   Found link https://files.pythonhosted.org/packages/b8/55/a62d05d6a2d35a6e9f2247586a77f8033eaeeffb8e8d4db6511252c8a59b/gtdbtk-0.0.3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.3
2024-04-24T03:07:19,928   Found link https://files.pythonhosted.org/packages/88/3d/2dedbfdce682d2c73aebb1182835889222aecefac4072e205e885b601be5/gtdbtk-0.0.4b0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b0
2024-04-24T03:07:19,929   Found link https://files.pythonhosted.org/packages/e7/21/7b30d68267c9ed81610a37c8fdac4b53f7090f9511d963a54754ec49d521/gtdbtk-0.0.4b1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b1
2024-04-24T03:07:19,930   Found link https://files.pythonhosted.org/packages/d1/f0/970559d46438a2004ccaa4199491188afc1bb13304fb899b26a3530ed841/gtdbtk-0.0.4b2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b2
2024-04-24T03:07:19,930   Found link https://files.pythonhosted.org/packages/e0/47/a9610df19e2bcf2782fc1ee29e5f85452b20a22d6f80581a23e3c0111c52/gtdbtk-0.0.4b3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b3
2024-04-24T03:07:19,931   Found link https://files.pythonhosted.org/packages/bf/f1/ebd7ba5d9ac68fc00ec0f7a69b52111d945a70f836dd4ba975600b088a98/gtdbtk-0.0.5.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.5
2024-04-24T03:07:19,932   Found link https://files.pythonhosted.org/packages/ca/7c/fc51570da6722bd31e310bb1ac218cb9d839dfae5d5e94d0ea3666402812/gtdbtk-0.0.6.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.6
2024-04-24T03:07:19,932   Found link https://files.pythonhosted.org/packages/68/72/fdfc81336d6a94e8f286f562bc265e5d215f653f5d08d91689b6cb69a6cb/gtdbtk-0.0.7.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.7
2024-04-24T03:07:19,933   Found link https://files.pythonhosted.org/packages/00/bb/2c2c4a00d4ca637be0daa7ac6bca99011afa8c42de7148c4e5dd6fc28141/gtdbtk-0.0.8b1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.8b1
2024-04-24T03:07:19,934   Found link https://files.pythonhosted.org/packages/c0/3e/4a7f207340198fb69fe0764236f9cfb562840796cca457317024f1bcfb65/gtdbtk-0.1.0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.0
2024-04-24T03:07:19,935   Found link https://files.pythonhosted.org/packages/5f/c1/f028b36863e2b27d0a4191f4033eec25cfff898abceb97b0ccfa1352e1f0/gtdbtk-0.1.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.1
2024-04-24T03:07:19,935   Found link https://files.pythonhosted.org/packages/1f/40/6a7cae5b58902ff5add1db17bf0dd24857bfedacd73f47096e3ef5789899/gtdbtk-0.1.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.2
2024-04-24T03:07:19,936   Found link https://files.pythonhosted.org/packages/e4/e7/481464381afdf57da5e920a1713a73627373583c57d292ad7155e8b4f32c/gtdbtk-0.1.3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.3
2024-04-24T03:07:19,937   Found link https://files.pythonhosted.org/packages/29/6d/e9dc39898e8cc79fe54b5109ca7ed03842bcab51368cc6dbf05c2b2c6f39/gtdbtk-0.1.6.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.1.6
2024-04-24T03:07:19,937   Found link https://files.pythonhosted.org/packages/db/c8/b052434152065efc0d209401041a7f7ba51c153832f4fe0a424fe0990cfa/gtdbtk-0.2.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.2.1
2024-04-24T03:07:19,938   Found link https://files.pythonhosted.org/packages/0a/74/8cbe8afea3aa0f7d6b948210b8937f3edcf541b3212cae2ce6aa560276a9/gtdbtk-0.2.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.2.2
2024-04-24T03:07:19,939   Found link https://files.pythonhosted.org/packages/45/de/019db6634299b4086a49646891c9e99347e2908713baa14641e15687e4af/gtdbtk-0.3.0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.0
2024-04-24T03:07:19,939   Found link https://files.pythonhosted.org/packages/6e/46/14181ed7f443fd8f70353250d09c94d2a2d867e68cc687167a8546ef4926/gtdbtk-0.3.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.1
2024-04-24T03:07:19,940   Found link https://files.pythonhosted.org/packages/91/64/06be7ada30b1895a1205feac310a92929a5e135b5821036632aa36d1354c/gtdbtk-0.3.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.2
2024-04-24T03:07:19,941   Found link https://files.pythonhosted.org/packages/7d/90/a62620e2c5c5799d0271f097a83c356dd7d458bf85651da24a353e93d669/gtdbtk-0.3.3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.3
2024-04-24T03:07:19,942   Found link https://files.pythonhosted.org/packages/48/b3/ce025d246df8196fbb18ac4ef9b3f09b430d8a71627b3b49dd7f33647b95/gtdbtk-1.0.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.0.0
2024-04-24T03:07:19,944   Found link https://files.pythonhosted.org/packages/87/bc/dcfb65d65adda7952adf9251cb7e86c2cc3143804932d2a6cbdc04f4249e/gtdbtk-1.0.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.0.1
2024-04-24T03:07:19,945   Found link https://files.pythonhosted.org/packages/cd/3b/c70443baef1058d1955bfe476d521a4ad423958bf349527cf75cb3e892a5/gtdbtk-1.0.2.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.0.2
2024-04-24T03:07:19,947   Found link https://files.pythonhosted.org/packages/f0/28/78411977ec02799a3a16a08ba9ea036851fd23d26126a583d7a4dbd7e129/gtdbtk-1.1.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.1.0
2024-04-24T03:07:19,948   Found link https://files.pythonhosted.org/packages/68/d0/bcdb38880ed7e0d0ae563c62b1f192b1d77a35a0d00b193f9e5a01817454/gtdbtk-1.1.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.1.1
2024-04-24T03:07:19,949   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/f3/56/60ff2a296580b4e5741592ad17ca874ba024f7f5c9c225d7cadfb9cfd54f/gtdbtk-1.2.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,950   Found link https://files.pythonhosted.org/packages/fd/9d/2060d8cdefde94050a969360e8b1343d6c441b35f57ca3000ec2b8c0c950/gtdbtk-1.2.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.2.0
2024-04-24T03:07:19,951   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/ef/47/293fd1fa9548d876d0da7f2a99a3784614850d84f9667dc08c1d28a50737/gtdbtk-1.3.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,952   Found link https://files.pythonhosted.org/packages/f0/bf/775eb9ba5e42ab33977228a3121db7f66c8b8ac422e0c8df7a51e14410b3/gtdbtk-1.3.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.3.0
2024-04-24T03:07:19,953   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/b9/4c/21a649b385d9c95f1da010261b1160334907d6192248b5b42ff2ebdafeb7/gtdbtk-1.4.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,954   Found link https://files.pythonhosted.org/packages/b7/6e/ff1416c31ab6b7034ac774ebe49b840e10f5ca1fd6469dc2e6b784718aeb/gtdbtk-1.4.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.4.0
2024-04-24T03:07:19,955   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/57/13/fc0f865fde7d1732821f7fde3f5ba91081128691bfb31420e1cc580f4cef/gtdbtk-1.4.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,956   Found link https://files.pythonhosted.org/packages/a0/e4/c7425e61d690b4eb1d04b586a76b760b11e1be576d0d2baacf0d7b341d21/gtdbtk-1.4.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.4.1
2024-04-24T03:07:19,957   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/50/13/0a4cca6299f809c1c0e760c735053137c3a4aff2b646b91b121e203203ee/gtdbtk-1.5.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,958   Found link https://files.pythonhosted.org/packages/e7/df/64901f44cf635a6bbed28f66a13c7dbe0ac4c29afc28e07cd5d9b1730efe/gtdbtk-1.5.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.5.0
2024-04-24T03:07:19,959   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/f3/17/383985ce3c67ab7c7d83753cc6792f4ddbce4c7bc5728765c9000b116962/gtdbtk-1.5.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,960   Found link https://files.pythonhosted.org/packages/46/7d/42643d2bed1eb3406a32c8cedd4be15aa03a47a29d09c2be1498b0602428/gtdbtk-1.5.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.5.1
2024-04-24T03:07:19,961   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/34/43/30519d579e26c5b2bf8370bcdc49e4b7805bf0445b766f54459e2fa1560c/gtdbtk-1.6.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,962   Found link https://files.pythonhosted.org/packages/e5/0b/c809fdd5da93a76edcb388c8ce5bf0f9836df548fb5e73c1bd4a90de0c3c/gtdbtk-1.6.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.6.0
2024-04-24T03:07:19,963   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/4a/cc/631e798a8f921fc6c504591472e34a04c2868f7ce7fdfc1b3c1cb5a81c05/gtdbtk-1.7.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,964   Found link https://files.pythonhosted.org/packages/a0/eb/859b20c3adeb96ca72f242bc31cd30319c2bd6e4d130c13aba0b76d2fe34/gtdbtk-1.7.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.7.0
2024-04-24T03:07:19,965   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/c5/ac/fd59f08a268eab7c094ee1e9b14004c591c3477b11628c9e08aaad2bbaa6/gtdbtk-2.0.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,966   Found link https://files.pythonhosted.org/packages/7e/43/9b3c861f07fa420e9595fdf5f2261c0d1519a01f9e994b6445fb2e263d98/gtdbtk-2.0.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.0.0
2024-04-24T03:07:19,967   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/b8/78/853a62dd98c99a31191df3f6d130834cad0ae00c5159d32cb9667af48943/gtdbtk-2.1.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,968   Found link https://files.pythonhosted.org/packages/5b/b7/6bc0bb66462d3b669ee1e5d39234efec662eed17ea2afa11df918dbe2552/gtdbtk-2.1.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.1.0
2024-04-24T03:07:19,969   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/b9/f4/afbebf8c28c3717584100d8d8d924259314c972abb581d2eb0424a021517/gtdbtk-2.1.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,970   Found link https://files.pythonhosted.org/packages/71/9a/ae98b3aca31a1106fbcf01b4567184e6a8fa5abbb74749e287c3f5238ad8/gtdbtk-2.1.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.1.1
2024-04-24T03:07:19,971   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/30/e5/e497c084510ce4c0898ddb2df2f7d938b5d63de0e26cb42f11600c0c9559/gtdbtk-2.2.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,972   Found link https://files.pythonhosted.org/packages/6d/d7/60f98a610b01d35736088897697c538bbe2f83aa091e6d5cca1a84122ad0/gtdbtk-2.2.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.0
2024-04-24T03:07:19,973   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/3c/ad/d6016544dd8d2dc164569b328307dc09e7029112016b87941180cd3fd3e3/gtdbtk-2.2.1-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,974   Found link https://files.pythonhosted.org/packages/9c/ce/b46fe9815e149aa238471118f5ffb50d67eab2b4c8a94d1fe3a480052166/gtdbtk-2.2.1.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.1
2024-04-24T03:07:19,975   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/48/bc/6f4c477f7fe9d4d67abd5a2843c88533570cd482a63e35c1f2589393126f/gtdbtk-2.2.2-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,976   Found link https://files.pythonhosted.org/packages/ee/bb/539be0884928b9906f9a4ffb0118e4501f6f203afda9fe1a5c40b231d150/gtdbtk-2.2.2.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.2
2024-04-24T03:07:19,977   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/02/43/0ba90c5591bea3ec5f2340724f0b5a12da4fe2cebe5a79022be66b406917/gtdbtk-2.2.3-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,978   Found link https://files.pythonhosted.org/packages/51/6d/8a161d447e0d3db86dffe2c684272be3969254b056ef819a270a10e5bdbd/gtdbtk-2.2.3.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.3
2024-04-24T03:07:19,979   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/a5/32/24f75f992865e4e5c761bb04a48ebc510dd91b9f04d5f1424eb5e4161ac4/gtdbtk-2.2.4-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,980   Found link https://files.pythonhosted.org/packages/70/ee/8ae2325f1f084a901575e9dffe8c8e7dae4bb89df809858983281177c0d1/gtdbtk-2.2.4.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.4
2024-04-24T03:07:19,981   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/55/a0/82538604d4f39129c5632cf6d8b26a4b2993e9fd4fecc5f8ca6f0a118be0/gtdbtk-2.2.5-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,982   Found link https://files.pythonhosted.org/packages/29/7b/3aed07a21e615b1b3f0a2fbcf8c7032ffe50d45fd4ffba50f59a12aab20f/gtdbtk-2.2.5.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.5
2024-04-24T03:07:19,983   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/f6/a2/877a99121b5cc2071ef2cff154c037418df0dce5d4512ed5eebcac3adff1/gtdbtk-2.2.6-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,984   Found link https://files.pythonhosted.org/packages/43/1d/f650449e249a128023732c98dc8f570d4033d52b81d64e442c0ea49175cc/gtdbtk-2.2.6.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.6
2024-04-24T03:07:19,985   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/4e/be/72ff9d9e718e08898e8f9817ae91d06c8364b288d3c082026ddab01ba4e0/gtdbtk-2.3.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,986   Found link https://files.pythonhosted.org/packages/17/7f/8e724eb5b29d4a3d73d4530e8c9f18296a1f69fde82d634772ed6f0a267a/gtdbtk-2.3.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.3.0
2024-04-24T03:07:19,987   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/34/25/c0306cf86abfa667f94f0d7591b251977b7f7af57ce613217873398bc0e5/gtdbtk-2.3.2-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,988   Found link https://files.pythonhosted.org/packages/5a/4b/2ed5ee6a35a0f9b4ec896e0b796aeb931824d82b9ca236665e5839b9a7a7/gtdbtk-2.3.2.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.3.2
2024-04-24T03:07:19,989   Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/3e/df/7409603fc08d111a48ed3399f1f895e7c6929e295d5b1eac44fab61c8990/gtdbtk-2.4.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:19,990   Found link https://files.pythonhosted.org/packages/c6/bd/b66510b12e1b143fcd6fd45a78a8c50cf8750e95d98ebcb5b496421ab279/gtdbtk-2.4.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.4.0
2024-04-24T03:07:19,991 Fetching project page and analyzing links: https://www.piwheels.org/simple/gtdbtk/
2024-04-24T03:07:19,992 Getting page https://www.piwheels.org/simple/gtdbtk/
2024-04-24T03:07:19,994 Found index url https://www.piwheels.org/simple/
2024-04-24T03:07:20,160 Fetched page https://www.piwheels.org/simple/gtdbtk/ as text/html
2024-04-24T03:07:20,196   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.3.2-py3-none-any.whl#sha256=1351c330c45bcc527bfc545253f4671fc8d4e0a5b5ab94387910c7016b52b9ab (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,196   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.3.0-py3-none-any.whl#sha256=c67a62ad20275141b009be21cc871ec657a8ad737c61d0e6866b1b0b25778f2f (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,197   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.6-py3-none-any.whl#sha256=6f7c68179bd28368cf55f8f05f578c9690148531b6f2bba8106f0a7ff5705bc5 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,197   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.5-py3-none-any.whl#sha256=373f24c03ca4a533fc30378cc753ef810c9943df2fe1f361d39b11133869f81e (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,198   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.4-py3-none-any.whl#sha256=f20682a7cd468122eebde8ada2d62256fda4c792fb24359eb3cec4802065cfb3 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,199   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.3-py3-none-any.whl#sha256=06f93a7c81ad0d432168b3c6813c6b41c6c62c8c772d3f5a3f7a07026002e417 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,199   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.2-py3-none-any.whl#sha256=b2a2470befeb113d05b7e439d383b55fa4a7bf604d4de4b947eceb0cdd11feb9 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,200   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.1-py3-none-any.whl#sha256=2cf336d7981cf9e722bb1ab210ad70a0fdc421364d66f121ba0ed2764f49d831 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,200   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.0-py3-none-any.whl#sha256=5c45fb62612730c01589d011786f7b5c8250979d050974c445f554e96c0032fc (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,201   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.1.1-py3-none-any.whl#sha256=9ab09353c8901bf41d042f5dd678b8e4a0b44bd88b9edf99c113095e719fa689 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,201   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.1.0-py3-none-any.whl#sha256=1a3aba4f0aa3916d66fa1b335bc75f3e4275f208aabcf8f52b16cc31c8a28251 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,202   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.0.0-py3-none-any.whl#sha256=3f62231589bd3b33d50492de0f098ded08e2d24736ebe3517140beffd23c6095 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,202   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.7.0-py3-none-any.whl#sha256=1cec9664f2cdcf1d97bc8eb584bfc3973bd54674846aa4af6320e2db8866e97d (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,203   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.6.0-py3-none-any.whl#sha256=b5a207597ad94381e816d097e1e1925df4e5570643272ed7b76db5dd3001ebde (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,203   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.5.1-py3-none-any.whl#sha256=ed5d3a99e31ba670781bfdc0b376d6269e1d683d7385d3508bdfd574f1a16b5c (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,204   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.5.0-py3-none-any.whl#sha256=4d5f2ecca5c2f1e7b279ff1bba63edd378e64f1195c8da6f8d2fe1c37bb1a02e (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,204   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.4.1-py3-none-any.whl#sha256=5bf60e34c9532ee96689ca34330f5f4ad6d344bac28ebdd1925ee4d0326e4345 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,205   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.4.0-py3-none-any.whl#sha256=ead9eb6d9df9b31e5b067e8f9993ef52975d454ab8685e1df66d9e201ac5c596 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,205   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.3.0-py3-none-any.whl#sha256=d7e3fccd83e155a4c737695d252e66a9076b236bed81fc4c193646bd2888ea79 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,206   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.2.0-py3-none-any.whl#sha256=6f16eed44889ee0d388564ccd30cce43c7059cb71fea4178339085d5cda33d84 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,206   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.1.1-py3-none-any.whl#sha256=6015c83a790205e33f5f1a6b18e6dc3f59ed21785e21e2335e333d2a0c2b6149 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,207   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.1.0-py3-none-any.whl#sha256=74644ddd23fa626c60834924b75ff2461cfe146825dfe8cb56ba7aa87f80065c (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,207   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.2-py3-none-any.whl#sha256=bcb2aff77a5de8e7ee657b155c07cef65e54ed4c69e75f792746eeb1a116d7d8 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,208   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.1-py3-none-any.whl#sha256=4f17b5e884096c03286b38720b63f262572ca3f8c6fcce36fb3a543aa1c45840 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,208   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.0-py3-none-any.whl#sha256=3206ab5f69c97d1c89cea39475c4e02c9af7414d02575fde530a36c099cb8f23 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6)
2024-04-24T03:07:20,209   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.3-py3-none-any.whl#sha256=053ec454ce316e998d7be98ccd60e1e66e3a77dec93328e15b07f05ad137b0a6 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,209   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.2-py3-none-any.whl#sha256=083ef29deb14040d3795f158fa610a234aabb50077070bbe5a4f4daf32ba70a7 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,210   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.1-py3-none-any.whl#sha256=7c6b5d5774b8c786683f0843a0d30b610640a0ae08e45dac6d1ee6a6145ea7ba (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,210   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.3.0-py3-none-any.whl#sha256=967042d7d0fb425c296cb4370268936f5efab1086c93bba32aa75b05eb61d5eb (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,211   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.2.2-py3-none-any.whl#sha256=0f2f51b4c73c58071c0e693201460c6b3d67d4a956368ed7b2df1555a9a2d5e3 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,211   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.2.1-py3-none-any.whl#sha256=c3dda689b923a8788e648223335928c657b054fecd8eeb78e5e48e7be5cd3df4 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,212   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.6-py3-none-any.whl#sha256=dd5a03ce2b22ffe66b776fb405e95f4f7a70fed4ba1a7087db1de973f4e22fef (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,212   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.3-py3-none-any.whl#sha256=02c694c6199f0c5db1056131515f4272e703ea6beceffb16678ad3eb24358d8d (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,213   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.2-py3-none-any.whl#sha256=4b75117a7c332187dfb858bffe54fbadf2a9f39960fcc21d2bce0db59b6e114d (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,213   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.1-py3-none-any.whl#sha256=c971843754fb3c11f48ead52c04bc7bd86ddeab289fd362e9e24a9c0fd1f2879 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,214   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.0-py3-none-any.whl#sha256=3133231730578803c78146b89d575c44b9ac4419b598cbb7a3178c13e5175428 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,214   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.8b1-py3-none-any.whl#sha256=f8404616952a9ef6a46543f35e0263365db7dde0f1010383871c30b5db9fc8db (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,215   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.7-py3-none-any.whl#sha256=ff0ee32028021f53551b42ec4d3ddd9e5f3f046795606fc0612f232672e7bbf4 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,215   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.6-py3-none-any.whl#sha256=ed899d29852d0a5921b1d5319f20e5f5b827f30d0a14fd5afa37e9a4eb02f745 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,216   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.5-py3-none-any.whl#sha256=ae582d50ba58fd74c73ec1a0a37f427d3343e9f20fe45389ee098ed5ef99e3f4 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,216   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b3-py3-none-any.whl#sha256=2d5b93346985d7186695de6a4dc010b9abf4e108ec438f449b74705eb7191fc1 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,217   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b2-py3-none-any.whl#sha256=177fdc2bb5e28ee60a931441956acff6b853871395a611bc1404c7f78a2a3f85 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,217   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b1-py3-none-any.whl#sha256=cffebc36f92b7947522a0e8d0fe11d9a7051a036352eb036ca90db5a14e591e1 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,218   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b0-py3-none-any.whl#sha256=1a96ec79753b589c69bb9c881bdedfc0aef683779cb926da47f22e85e77bb203 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,218   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.3-py3-none-any.whl#sha256=6670c151da83c393482600e07c463c74de77ab5776f88a4978d1b7defa71f852 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,219   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.2-py3-none-any.whl#sha256=dac945e10b775b7c8ab5f5b16635bd016d17aacb8a4ad77708ce67dc1b3f3ed6 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,219   Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.1-py3-none-any.whl#sha256=05d5353a17e20d9bc2a38528bb3b2e2e28d3188d4ebf69192793cd3e0d5199e6 (from https://www.piwheels.org/simple/gtdbtk/)
2024-04-24T03:07:20,220 Skipping link: not a file: https://www.piwheels.org/simple/gtdbtk/
2024-04-24T03:07:20,220 Skipping link: not a file: https://pypi.org/simple/gtdbtk/
2024-04-24T03:07:20,273 Given no hashes to check 1 links for project 'gtdbtk': discarding no candidates
2024-04-24T03:07:20,306 Collecting gtdbtk==2.4.0
2024-04-24T03:07:20,310   Created temporary directory: /tmp/pip-unpack-hb5k99k0
2024-04-24T03:07:20,407   Downloading gtdbtk-2.4.0.tar.gz (1.7 MB)
2024-04-24T03:07:21,957   Added gtdbtk==2.4.0 from https://files.pythonhosted.org/packages/c6/bd/b66510b12e1b143fcd6fd45a78a8c50cf8750e95d98ebcb5b496421ab279/gtdbtk-2.4.0.tar.gz to build tracker '/tmp/pip-build-tracker-1rc9ldnz'
2024-04-24T03:07:21,961   Running setup.py (path:/tmp/pip-wheel-krup5pzm/gtdbtk_e5874075630846b5ab98924806eec06c/setup.py) egg_info for package gtdbtk
2024-04-24T03:07:21,962   Created temporary directory: /tmp/pip-pip-egg-info-memff3ii
2024-04-24T03:07:21,963   Preparing metadata (setup.py): started
2024-04-24T03:07:21,965   Running command python setup.py egg_info
2024-04-24T03:07:24,641   running egg_info
2024-04-24T03:07:24,644   creating /tmp/pip-pip-egg-info-memff3ii/gtdbtk.egg-info
2024-04-24T03:07:24,710   writing /tmp/pip-pip-egg-info-memff3ii/gtdbtk.egg-info/PKG-INFO
2024-04-24T03:07:24,715   writing dependency_links to /tmp/pip-pip-egg-info-memff3ii/gtdbtk.egg-info/dependency_links.txt
2024-04-24T03:07:24,718   writing entry points to /tmp/pip-pip-egg-info-memff3ii/gtdbtk.egg-info/entry_points.txt
2024-04-24T03:07:24,721   writing requirements to /tmp/pip-pip-egg-info-memff3ii/gtdbtk.egg-info/requires.txt
2024-04-24T03:07:24,723   writing top-level names to /tmp/pip-pip-egg-info-memff3ii/gtdbtk.egg-info/top_level.txt
2024-04-24T03:07:24,726   writing manifest file '/tmp/pip-pip-egg-info-memff3ii/gtdbtk.egg-info/SOURCES.txt'
2024-04-24T03:07:25,130   listing git files failed - pretending there aren't any
2024-04-24T03:07:25,152   reading manifest file '/tmp/pip-pip-egg-info-memff3ii/gtdbtk.egg-info/SOURCES.txt'
2024-04-24T03:07:25,156   adding license file 'LICENSE'
2024-04-24T03:07:25,171   writing manifest file '/tmp/pip-pip-egg-info-memff3ii/gtdbtk.egg-info/SOURCES.txt'
2024-04-24T03:07:25,362   Preparing metadata (setup.py): finished with status 'done'
2024-04-24T03:07:25,376   Source in /tmp/pip-wheel-krup5pzm/gtdbtk_e5874075630846b5ab98924806eec06c has version 2.4.0, which satisfies requirement gtdbtk==2.4.0 from https://files.pythonhosted.org/packages/c6/bd/b66510b12e1b143fcd6fd45a78a8c50cf8750e95d98ebcb5b496421ab279/gtdbtk-2.4.0.tar.gz
2024-04-24T03:07:25,378   Removed gtdbtk==2.4.0 from https://files.pythonhosted.org/packages/c6/bd/b66510b12e1b143fcd6fd45a78a8c50cf8750e95d98ebcb5b496421ab279/gtdbtk-2.4.0.tar.gz from build tracker '/tmp/pip-build-tracker-1rc9ldnz'
2024-04-24T03:07:25,394 Created temporary directory: /tmp/pip-unpack-92ku8adb
2024-04-24T03:07:25,396 Created temporary directory: /tmp/pip-unpack-4kw29vou
2024-04-24T03:07:25,414 Building wheels for collected packages: gtdbtk
2024-04-24T03:07:25,423   Created temporary directory: /tmp/pip-wheel-yjuyqrij
2024-04-24T03:07:25,424   Building wheel for gtdbtk (setup.py): started
2024-04-24T03:07:25,426   Destination directory: /tmp/pip-wheel-yjuyqrij
2024-04-24T03:07:25,426   Running command python setup.py bdist_wheel
2024-04-24T03:07:28,139   running bdist_wheel
2024-04-24T03:07:28,349   running build
2024-04-24T03:07:28,349   running build_py
2024-04-24T03:07:28,425   creating build
2024-04-24T03:07:28,425   creating build/lib
2024-04-24T03:07:28,427   creating build/lib/gtdbtk
2024-04-24T03:07:28,430   copying gtdbtk/ani_screen.py -> build/lib/gtdbtk
2024-04-24T03:07:28,435   copying gtdbtk/exceptions.py -> build/lib/gtdbtk
2024-04-24T03:07:28,440   copying gtdbtk/main.py -> build/lib/gtdbtk
2024-04-24T03:07:28,447   copying gtdbtk/classify.py -> build/lib/gtdbtk
2024-04-24T03:07:28,457   copying gtdbtk/misc.py -> build/lib/gtdbtk
2024-04-24T03:07:28,462   copying gtdbtk/tools.py -> build/lib/gtdbtk
2024-04-24T03:07:28,467   copying gtdbtk/ani_rep.py -> build/lib/gtdbtk
2024-04-24T03:07:28,472   copying gtdbtk/infer_ranks.py -> build/lib/gtdbtk
2024-04-24T03:07:28,477   copying gtdbtk/__main__.py -> build/lib/gtdbtk
2024-04-24T03:07:28,482   copying gtdbtk/split.py -> build/lib/gtdbtk
2024-04-24T03:07:28,488   copying gtdbtk/relative_distance.py -> build/lib/gtdbtk
2024-04-24T03:07:28,494   copying gtdbtk/decorate.py -> build/lib/gtdbtk
2024-04-24T03:07:28,500   copying gtdbtk/trim_msa.py -> build/lib/gtdbtk
2024-04-24T03:07:28,506   copying gtdbtk/reroot_tree.py -> build/lib/gtdbtk
2024-04-24T03:07:28,511   copying gtdbtk/markers.py -> build/lib/gtdbtk
2024-04-24T03:07:28,517   copying gtdbtk/cli.py -> build/lib/gtdbtk
2024-04-24T03:07:28,522   copying gtdbtk/__init__.py -> build/lib/gtdbtk
2024-04-24T03:07:28,527   creating build/lib/tests
2024-04-24T03:07:28,528   copying tests/test_cli.py -> build/lib/tests
2024-04-24T03:07:28,534   copying tests/test_classify.py -> build/lib/tests
2024-04-24T03:07:28,538   copying tests/common.py -> build/lib/tests
2024-04-24T03:07:28,541   copying tests/__init__.py -> build/lib/tests
2024-04-24T03:07:28,545   creating build/lib/gtdbtk/config
2024-04-24T03:07:28,547   copying gtdbtk/config/output.py -> build/lib/gtdbtk/config
2024-04-24T03:07:28,552   copying gtdbtk/config/common.py -> build/lib/gtdbtk/config
2024-04-24T03:07:28,556   copying gtdbtk/config/__init__.py -> build/lib/gtdbtk/config
2024-04-24T03:07:28,561   creating build/lib/gtdbtk/pipeline
2024-04-24T03:07:28,563   copying gtdbtk/pipeline/align.py -> build/lib/gtdbtk/pipeline
2024-04-24T03:07:28,567   copying gtdbtk/pipeline/export_msa.py -> build/lib/gtdbtk/pipeline
2024-04-24T03:07:28,571   copying gtdbtk/pipeline/__init__.py -> build/lib/gtdbtk/pipeline
2024-04-24T03:07:28,576   creating build/lib/gtdbtk/files
2024-04-24T03:07:28,578   copying gtdbtk/files/red_dict.py -> build/lib/gtdbtk/files
2024-04-24T03:07:28,582   copying gtdbtk/files/missing_genomes.py -> build/lib/gtdbtk/files
2024-04-24T03:07:28,585   copying gtdbtk/files/classify_summary.py -> build/lib/gtdbtk/files
2024-04-24T03:07:28,590   copying gtdbtk/files/stage_logger.py -> build/lib/gtdbtk/files
2024-04-24T03:07:28,595   copying gtdbtk/files/marker_info.py -> build/lib/gtdbtk/files
2024-04-24T03:07:28,598   copying gtdbtk/files/gtdb_radii.py -> build/lib/gtdbtk/files
2024-04-24T03:07:28,602   copying gtdbtk/files/tree_mapping.py -> build/lib/gtdbtk/files
2024-04-24T03:07:28,606   copying gtdbtk/files/pplacer_classification.py -> build/lib/gtdbtk/files
2024-04-24T03:07:28,610   copying gtdbtk/files/batchfile.py -> build/lib/gtdbtk/files
2024-04-24T03:07:28,614   copying gtdbtk/files/__init__.py -> build/lib/gtdbtk/files
2024-04-24T03:07:28,618   creating build/lib/gtdbtk/external
2024-04-24T03:07:28,620   copying gtdbtk/external/pplacer.py -> build/lib/gtdbtk/external
2024-04-24T03:07:28,625   copying gtdbtk/external/tigrfam_search.py -> build/lib/gtdbtk/external
2024-04-24T03:07:28,629   copying gtdbtk/external/fasttree.py -> build/lib/gtdbtk/external
2024-04-24T03:07:28,634   copying gtdbtk/external/pfam_search.py -> build/lib/gtdbtk/external
2024-04-24T03:07:28,638   copying gtdbtk/external/fastani.py -> build/lib/gtdbtk/external
2024-04-24T03:07:28,643   copying gtdbtk/external/mash.py -> build/lib/gtdbtk/external
2024-04-24T03:07:28,647   copying gtdbtk/external/skani.py -> build/lib/gtdbtk/external
2024-04-24T03:07:28,652   copying gtdbtk/external/hmm_aligner.py -> build/lib/gtdbtk/external
2024-04-24T03:07:28,657   copying gtdbtk/external/prodigal.py -> build/lib/gtdbtk/external
2024-04-24T03:07:28,661   copying gtdbtk/external/__init__.py -> build/lib/gtdbtk/external
2024-04-24T03:07:28,666   creating build/lib/gtdbtk/model
2024-04-24T03:07:28,668   copying gtdbtk/model/enum.py -> build/lib/gtdbtk/model
2024-04-24T03:07:28,672   copying gtdbtk/model/__init__.py -> build/lib/gtdbtk/model
2024-04-24T03:07:28,677   creating build/lib/gtdbtk/biolib_lite
2024-04-24T03:07:28,680   copying gtdbtk/biolib_lite/parallel.py -> build/lib/gtdbtk/biolib_lite
2024-04-24T03:07:28,685   copying gtdbtk/biolib_lite/exceptions.py -> build/lib/gtdbtk/biolib_lite
2024-04-24T03:07:28,690   copying gtdbtk/biolib_lite/custom_help_formatter.py -> build/lib/gtdbtk/biolib_lite
2024-04-24T03:07:28,694   copying gtdbtk/biolib_lite/newick.py -> build/lib/gtdbtk/biolib_lite
2024-04-24T03:07:28,699   copying gtdbtk/biolib_lite/common.py -> build/lib/gtdbtk/biolib_lite
2024-04-24T03:07:28,704   copying gtdbtk/biolib_lite/execute.py -> build/lib/gtdbtk/biolib_lite
2024-04-24T03:07:28,708   copying gtdbtk/biolib_lite/seq_io.py -> build/lib/gtdbtk/biolib_lite
2024-04-24T03:07:28,712   copying gtdbtk/biolib_lite/taxonomy.py -> build/lib/gtdbtk/biolib_lite
2024-04-24T03:07:28,718   copying gtdbtk/biolib_lite/logger.py -> build/lib/gtdbtk/biolib_lite
2024-04-24T03:07:28,723   copying gtdbtk/biolib_lite/prodigal_biolib.py -> build/lib/gtdbtk/biolib_lite
2024-04-24T03:07:28,727   copying gtdbtk/biolib_lite/__init__.py -> build/lib/gtdbtk/biolib_lite
2024-04-24T03:07:28,732   creating build/lib/gtdbtk/files/marker
2024-04-24T03:07:28,734   copying gtdbtk/files/marker/copy_number.py -> build/lib/gtdbtk/files/marker
2024-04-24T03:07:28,738   copying gtdbtk/files/marker/tophit.py -> build/lib/gtdbtk/files/marker
2024-04-24T03:07:28,742   copying gtdbtk/files/marker/__init__.py -> build/lib/gtdbtk/files/marker
2024-04-24T03:07:28,746   creating build/lib/gtdbtk/files/prodigal
2024-04-24T03:07:28,748   copying gtdbtk/files/prodigal/tln_table_summary.py -> build/lib/gtdbtk/files/prodigal
2024-04-24T03:07:28,752   copying gtdbtk/files/prodigal/tln_table.py -> build/lib/gtdbtk/files/prodigal
2024-04-24T03:07:28,756   copying gtdbtk/files/prodigal/__init__.py -> build/lib/gtdbtk/files/prodigal
2024-04-24T03:07:28,759   creating build/lib/gtdbtk/external/pypfam
2024-04-24T03:07:28,761   copying gtdbtk/external/pypfam/__init__.py -> build/lib/gtdbtk/external/pypfam
2024-04-24T03:07:28,765   creating build/lib/gtdbtk/external/pypfam/Scan
2024-04-24T03:07:28,767   copying gtdbtk/external/pypfam/Scan/PfamScan.py -> build/lib/gtdbtk/external/pypfam/Scan
2024-04-24T03:07:28,773   copying gtdbtk/external/pypfam/Scan/__init__.py -> build/lib/gtdbtk/external/pypfam/Scan
2024-04-24T03:07:28,777   creating build/lib/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:28,779   copying gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/lib/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:28,783   copying gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/lib/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:28,787   copying gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/lib/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:28,792   copying gtdbtk/external/pypfam/HMM/HMMResults.py -> build/lib/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:28,797   copying gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/lib/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:28,805   copying gtdbtk/external/pypfam/HMM/__init__.py -> build/lib/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:28,810   creating build/lib/tests/test_gtdbtk
2024-04-24T03:07:28,812   copying tests/test_gtdbtk/test__main__.py -> build/lib/tests/test_gtdbtk
2024-04-24T03:07:28,818   copying tests/test_gtdbtk/test_markers.py -> build/lib/tests/test_gtdbtk
2024-04-24T03:07:28,822   copying tests/test_gtdbtk/test_tools.py -> build/lib/tests/test_gtdbtk
2024-04-24T03:07:28,827   copying tests/test_gtdbtk/test_trim_msa.py -> build/lib/tests/test_gtdbtk
2024-04-24T03:07:28,832   copying tests/test_gtdbtk/test_main.py -> build/lib/tests/test_gtdbtk
2024-04-24T03:07:28,837   copying tests/test_gtdbtk/__init__.py -> build/lib/tests/test_gtdbtk
2024-04-24T03:07:28,841   creating build/lib/tests/test_gtdbtk/test_files
2024-04-24T03:07:28,842   copying tests/test_gtdbtk/test_files/__init__.py -> build/lib/tests/test_gtdbtk/test_files
2024-04-24T03:07:28,847   creating build/lib/tests/test_gtdbtk/test_external
2024-04-24T03:07:28,849   copying tests/test_gtdbtk/test_external/test_skani.py -> build/lib/tests/test_gtdbtk/test_external
2024-04-24T03:07:28,853   copying tests/test_gtdbtk/test_external/test_fastani.py -> build/lib/tests/test_gtdbtk/test_external
2024-04-24T03:07:28,857   copying tests/test_gtdbtk/test_external/test_fasttree.py -> build/lib/tests/test_gtdbtk/test_external
2024-04-24T03:07:28,861   copying tests/test_gtdbtk/test_external/__init__.py -> build/lib/tests/test_gtdbtk/test_external
2024-04-24T03:07:28,866   creating build/lib/tests/test_gtdbtk/test_biolib_lite
2024-04-24T03:07:28,869   copying tests/test_gtdbtk/test_biolib_lite/test_seq_io.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2024-04-24T03:07:28,874   copying tests/test_gtdbtk/test_biolib_lite/test_newick.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2024-04-24T03:07:28,878   copying tests/test_gtdbtk/test_biolib_lite/test_common.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2024-04-24T03:07:28,883   copying tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2024-04-24T03:07:28,886   copying tests/test_gtdbtk/test_biolib_lite/__init__.py -> build/lib/tests/test_gtdbtk/test_biolib_lite
2024-04-24T03:07:28,891   creating build/lib/tests/test_gtdbtk/test_files/test_marker
2024-04-24T03:07:28,894   copying tests/test_gtdbtk/test_files/test_marker/test_tophit.py -> build/lib/tests/test_gtdbtk/test_files/test_marker
2024-04-24T03:07:28,899   copying tests/test_gtdbtk/test_files/test_marker/test_copy_number.py -> build/lib/tests/test_gtdbtk/test_files/test_marker
2024-04-24T03:07:28,905   copying tests/test_gtdbtk/test_files/test_marker/__init__.py -> build/lib/tests/test_gtdbtk/test_files/test_marker
2024-04-24T03:07:28,909   creating build/lib/tests/test_gtdbtk/test_files/test_prodigal
2024-04-24T03:07:28,912   copying tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py -> build/lib/tests/test_gtdbtk/test_files/test_prodigal
2024-04-24T03:07:28,916   copying tests/test_gtdbtk/test_files/test_prodigal/__init__.py -> build/lib/tests/test_gtdbtk/test_files/test_prodigal
2024-04-24T03:07:28,924   creating build/lib/gtdbtk/tests
2024-04-24T03:07:28,925   creating build/lib/gtdbtk/tests/data
2024-04-24T03:07:28,927   creating build/lib/gtdbtk/tests/data/genomes
2024-04-24T03:07:28,930   copying gtdbtk/tests/data/genomes/genome_2.fna -> build/lib/gtdbtk/tests/data/genomes
2024-04-24T03:07:28,999   copying gtdbtk/tests/data/genomes/genome_1.fna -> build/lib/gtdbtk/tests/data/genomes
2024-04-24T03:07:29,160   copying gtdbtk/tests/data/genomes/genome_3.fna -> build/lib/gtdbtk/tests/data/genomes
2024-04-24T03:07:30,472   /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-04-24T03:07:30,473   !!

2024-04-24T03:07:30,473           ********************************************************************************
2024-04-24T03:07:30,474           Please avoid running ``setup.py`` directly.
2024-04-24T03:07:30,474           Instead, use pypa/build, pypa/installer or other
2024-04-24T03:07:30,474           standards-based tools.

2024-04-24T03:07:30,475           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-04-24T03:07:30,475           ********************************************************************************

2024-04-24T03:07:30,476   !!
2024-04-24T03:07:30,476     self.initialize_options()
2024-04-24T03:07:30,538   installing to build/bdist.linux-armv7l/wheel
2024-04-24T03:07:30,538   running install
2024-04-24T03:07:30,601   running install_lib
2024-04-24T03:07:30,668   creating build/bdist.linux-armv7l
2024-04-24T03:07:30,669   creating build/bdist.linux-armv7l/wheel
2024-04-24T03:07:30,673   creating build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,676   creating build/bdist.linux-armv7l/wheel/gtdbtk/config
2024-04-24T03:07:30,678   copying build/lib/gtdbtk/config/output.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
2024-04-24T03:07:30,683   copying build/lib/gtdbtk/config/common.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
2024-04-24T03:07:30,689   copying build/lib/gtdbtk/config/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
2024-04-24T03:07:30,692   copying build/lib/gtdbtk/ani_screen.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,697   creating build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2024-04-24T03:07:30,699   copying build/lib/gtdbtk/pipeline/align.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2024-04-24T03:07:30,704   copying build/lib/gtdbtk/pipeline/export_msa.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2024-04-24T03:07:30,708   copying build/lib/gtdbtk/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline
2024-04-24T03:07:30,712   copying build/lib/gtdbtk/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,717   copying build/lib/gtdbtk/main.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,724   copying build/lib/gtdbtk/classify.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,735   copying build/lib/gtdbtk/misc.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,741   creating build/bdist.linux-armv7l/wheel/gtdbtk/files
2024-04-24T03:07:30,744   copying build/lib/gtdbtk/files/red_dict.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2024-04-24T03:07:30,750   creating build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2024-04-24T03:07:30,752   copying build/lib/gtdbtk/files/marker/copy_number.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2024-04-24T03:07:30,760   copying build/lib/gtdbtk/files/marker/tophit.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2024-04-24T03:07:30,766   copying build/lib/gtdbtk/files/marker/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker
2024-04-24T03:07:30,769   copying build/lib/gtdbtk/files/missing_genomes.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2024-04-24T03:07:30,774   copying build/lib/gtdbtk/files/classify_summary.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2024-04-24T03:07:30,779   copying build/lib/gtdbtk/files/stage_logger.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2024-04-24T03:07:30,784   copying build/lib/gtdbtk/files/marker_info.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2024-04-24T03:07:30,788   copying build/lib/gtdbtk/files/gtdb_radii.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2024-04-24T03:07:30,792   copying build/lib/gtdbtk/files/tree_mapping.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2024-04-24T03:07:30,797   copying build/lib/gtdbtk/files/pplacer_classification.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2024-04-24T03:07:30,802   copying build/lib/gtdbtk/files/batchfile.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2024-04-24T03:07:30,807   creating build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2024-04-24T03:07:30,809   copying build/lib/gtdbtk/files/prodigal/tln_table_summary.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2024-04-24T03:07:30,819   copying build/lib/gtdbtk/files/prodigal/tln_table.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2024-04-24T03:07:30,823   copying build/lib/gtdbtk/files/prodigal/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal
2024-04-24T03:07:30,826   copying build/lib/gtdbtk/files/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files
2024-04-24T03:07:30,829   copying build/lib/gtdbtk/tools.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,834   copying build/lib/gtdbtk/ani_rep.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,839   copying build/lib/gtdbtk/infer_ranks.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,844   copying build/lib/gtdbtk/__main__.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,849   creating build/bdist.linux-armv7l/wheel/gtdbtk/external
2024-04-24T03:07:30,851   copying build/lib/gtdbtk/external/pplacer.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2024-04-24T03:07:30,857   creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam
2024-04-24T03:07:30,860   creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
2024-04-24T03:07:30,862   copying build/lib/gtdbtk/external/pypfam/Scan/PfamScan.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
2024-04-24T03:07:30,867   copying build/lib/gtdbtk/external/pypfam/Scan/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
2024-04-24T03:07:30,872   creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:30,873   copying build/lib/gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:30,877   copying build/lib/gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:30,881   copying build/lib/gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:30,886   copying build/lib/gtdbtk/external/pypfam/HMM/HMMResults.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:30,891   copying build/lib/gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:30,894   copying build/lib/gtdbtk/external/pypfam/HMM/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
2024-04-24T03:07:30,897   copying build/lib/gtdbtk/external/pypfam/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam
2024-04-24T03:07:30,900   copying build/lib/gtdbtk/external/tigrfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2024-04-24T03:07:30,905   copying build/lib/gtdbtk/external/fasttree.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2024-04-24T03:07:30,909   copying build/lib/gtdbtk/external/pfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2024-04-24T03:07:30,914   copying build/lib/gtdbtk/external/fastani.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2024-04-24T03:07:30,919   copying build/lib/gtdbtk/external/mash.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2024-04-24T03:07:30,924   copying build/lib/gtdbtk/external/skani.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2024-04-24T03:07:30,928   copying build/lib/gtdbtk/external/hmm_aligner.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2024-04-24T03:07:30,934   copying build/lib/gtdbtk/external/prodigal.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2024-04-24T03:07:30,938   copying build/lib/gtdbtk/external/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
2024-04-24T03:07:30,942   creating build/bdist.linux-armv7l/wheel/gtdbtk/model
2024-04-24T03:07:30,944   copying build/lib/gtdbtk/model/enum.py -> build/bdist.linux-armv7l/wheel/gtdbtk/model
2024-04-24T03:07:30,948   copying build/lib/gtdbtk/model/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/model
2024-04-24T03:07:30,951   copying build/lib/gtdbtk/split.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,956   copying build/lib/gtdbtk/relative_distance.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,962   copying build/lib/gtdbtk/decorate.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,967   copying build/lib/gtdbtk/trim_msa.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,972   copying build/lib/gtdbtk/reroot_tree.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:30,978   creating build/bdist.linux-armv7l/wheel/gtdbtk/tests
2024-04-24T03:07:30,980   creating build/bdist.linux-armv7l/wheel/gtdbtk/tests/data
2024-04-24T03:07:30,983   creating build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2024-04-24T03:07:30,985   copying build/lib/gtdbtk/tests/data/genomes/genome_2.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2024-04-24T03:07:31,067   copying build/lib/gtdbtk/tests/data/genomes/genome_1.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2024-04-24T03:07:31,216   copying build/lib/gtdbtk/tests/data/genomes/genome_3.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
2024-04-24T03:07:31,330   copying build/lib/gtdbtk/markers.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:31,337   creating build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2024-04-24T03:07:31,339   copying build/lib/gtdbtk/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2024-04-24T03:07:31,344   copying build/lib/gtdbtk/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2024-04-24T03:07:31,347   copying build/lib/gtdbtk/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2024-04-24T03:07:31,352   copying build/lib/gtdbtk/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2024-04-24T03:07:31,356   copying build/lib/gtdbtk/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2024-04-24T03:07:31,359   copying build/lib/gtdbtk/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2024-04-24T03:07:31,364   copying build/lib/gtdbtk/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2024-04-24T03:07:31,368   copying build/lib/gtdbtk/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2024-04-24T03:07:31,374   copying build/lib/gtdbtk/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2024-04-24T03:07:31,378   copying build/lib/gtdbtk/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2024-04-24T03:07:31,389   copying build/lib/gtdbtk/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
2024-04-24T03:07:31,401   copying build/lib/gtdbtk/cli.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:31,420   copying build/lib/gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk
2024-04-24T03:07:31,431   creating build/bdist.linux-armv7l/wheel/tests
2024-04-24T03:07:31,433   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2024-04-24T03:07:31,435   copying build/lib/tests/test_gtdbtk/test__main__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2024-04-24T03:07:31,440   copying build/lib/tests/test_gtdbtk/test_markers.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2024-04-24T03:07:31,445   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files
2024-04-24T03:07:31,447   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2024-04-24T03:07:31,449   copying build/lib/tests/test_gtdbtk/test_files/test_marker/test_tophit.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2024-04-24T03:07:31,454   copying build/lib/tests/test_gtdbtk/test_files/test_marker/test_copy_number.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2024-04-24T03:07:31,458   copying build/lib/tests/test_gtdbtk/test_files/test_marker/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker
2024-04-24T03:07:31,462   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal
2024-04-24T03:07:31,464   copying build/lib/tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal
2024-04-24T03:07:31,468   copying build/lib/tests/test_gtdbtk/test_files/test_prodigal/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal
2024-04-24T03:07:31,471   copying build/lib/tests/test_gtdbtk/test_files/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files
2024-04-24T03:07:31,475   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2024-04-24T03:07:31,477   copying build/lib/tests/test_gtdbtk/test_external/test_skani.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2024-04-24T03:07:31,480   copying build/lib/tests/test_gtdbtk/test_external/test_fastani.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2024-04-24T03:07:31,485   copying build/lib/tests/test_gtdbtk/test_external/test_fasttree.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2024-04-24T03:07:31,488   copying build/lib/tests/test_gtdbtk/test_external/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external
2024-04-24T03:07:31,491   copying build/lib/tests/test_gtdbtk/test_tools.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2024-04-24T03:07:31,496   copying build/lib/tests/test_gtdbtk/test_trim_msa.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2024-04-24T03:07:31,500   creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2024-04-24T03:07:31,502   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_seq_io.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2024-04-24T03:07:31,506   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_newick.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2024-04-24T03:07:31,510   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_common.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2024-04-24T03:07:31,514   copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2024-04-24T03:07:31,517   copying build/lib/tests/test_gtdbtk/test_biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite
2024-04-24T03:07:31,520   copying build/lib/tests/test_gtdbtk/test_main.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2024-04-24T03:07:31,525   copying build/lib/tests/test_gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk
2024-04-24T03:07:31,528   copying build/lib/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/tests
2024-04-24T03:07:31,533   copying build/lib/tests/test_classify.py -> build/bdist.linux-armv7l/wheel/tests
2024-04-24T03:07:31,537   copying build/lib/tests/common.py -> build/bdist.linux-armv7l/wheel/tests
2024-04-24T03:07:31,540   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2024-04-24T03:07:31,543   running install_data
2024-04-24T03:07:31,610   creating build/bdist.linux-armv7l/wheel/gtdbtk-2.4.0.data
2024-04-24T03:07:31,611   creating build/bdist.linux-armv7l/wheel/gtdbtk-2.4.0.data/data
2024-04-24T03:07:31,613   copying LICENSE -> build/bdist.linux-armv7l/wheel/gtdbtk-2.4.0.data/data/
2024-04-24T03:07:31,618   running install_egg_info
2024-04-24T03:07:31,773   running egg_info
2024-04-24T03:07:31,838   writing gtdbtk.egg-info/PKG-INFO
2024-04-24T03:07:31,842   writing dependency_links to gtdbtk.egg-info/dependency_links.txt
2024-04-24T03:07:31,846   writing entry points to gtdbtk.egg-info/entry_points.txt
2024-04-24T03:07:31,848   writing requirements to gtdbtk.egg-info/requires.txt
2024-04-24T03:07:31,851   writing top-level names to gtdbtk.egg-info/top_level.txt
2024-04-24T03:07:32,114   listing git files failed - pretending there aren't any
2024-04-24T03:07:32,135   reading manifest file 'gtdbtk.egg-info/SOURCES.txt'
2024-04-24T03:07:32,146   adding license file 'LICENSE'
2024-04-24T03:07:32,164   writing manifest file 'gtdbtk.egg-info/SOURCES.txt'
2024-04-24T03:07:32,167   Copying gtdbtk.egg-info to build/bdist.linux-armv7l/wheel/gtdbtk-2.4.0-py3.7.egg-info
2024-04-24T03:07:32,192   running install_scripts
2024-04-24T03:07:32,240   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2024-04-24T03:07:32,252   creating build/bdist.linux-armv7l/wheel/gtdbtk-2.4.0.dist-info/WHEEL
2024-04-24T03:07:32,257   creating '/tmp/pip-wheel-yjuyqrij/gtdbtk-2.4.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-04-24T03:07:32,264   adding 'gtdbtk/__init__.py'
2024-04-24T03:07:32,267   adding 'gtdbtk/__main__.py'
2024-04-24T03:07:32,273   adding 'gtdbtk/ani_rep.py'
2024-04-24T03:07:32,276   adding 'gtdbtk/ani_screen.py'
2024-04-24T03:07:32,304   adding 'gtdbtk/classify.py'
2024-04-24T03:07:32,319   adding 'gtdbtk/cli.py'
2024-04-24T03:07:32,325   adding 'gtdbtk/decorate.py'
2024-04-24T03:07:32,328   adding 'gtdbtk/exceptions.py'
2024-04-24T03:07:32,332   adding 'gtdbtk/infer_ranks.py'
2024-04-24T03:07:32,344   adding 'gtdbtk/main.py'
2024-04-24T03:07:32,356   adding 'gtdbtk/markers.py'
2024-04-24T03:07:32,362   adding 'gtdbtk/misc.py'
2024-04-24T03:07:32,367   adding 'gtdbtk/relative_distance.py'
2024-04-24T03:07:32,371   adding 'gtdbtk/reroot_tree.py'
2024-04-24T03:07:32,377   adding 'gtdbtk/split.py'
2024-04-24T03:07:32,383   adding 'gtdbtk/tools.py'
2024-04-24T03:07:32,387   adding 'gtdbtk/trim_msa.py'
2024-04-24T03:07:32,391   adding 'gtdbtk/biolib_lite/__init__.py'
2024-04-24T03:07:32,394   adding 'gtdbtk/biolib_lite/common.py'
2024-04-24T03:07:32,398   adding 'gtdbtk/biolib_lite/custom_help_formatter.py'
2024-04-24T03:07:32,400   adding 'gtdbtk/biolib_lite/exceptions.py'
2024-04-24T03:07:32,404   adding 'gtdbtk/biolib_lite/execute.py'
2024-04-24T03:07:32,408   adding 'gtdbtk/biolib_lite/logger.py'
2024-04-24T03:07:32,411   adding 'gtdbtk/biolib_lite/newick.py'
2024-04-24T03:07:32,414   adding 'gtdbtk/biolib_lite/parallel.py'
2024-04-24T03:07:32,420   adding 'gtdbtk/biolib_lite/prodigal_biolib.py'
2024-04-24T03:07:32,423   adding 'gtdbtk/biolib_lite/seq_io.py'
2024-04-24T03:07:32,432   adding 'gtdbtk/biolib_lite/taxonomy.py'
2024-04-24T03:07:32,436   adding 'gtdbtk/config/__init__.py'
2024-04-24T03:07:32,440   adding 'gtdbtk/config/common.py'
2024-04-24T03:07:32,443   adding 'gtdbtk/config/output.py'
2024-04-24T03:07:32,447   adding 'gtdbtk/external/__init__.py'
2024-04-24T03:07:32,452   adding 'gtdbtk/external/fastani.py'
2024-04-24T03:07:32,456   adding 'gtdbtk/external/fasttree.py'
2024-04-24T03:07:32,460   adding 'gtdbtk/external/hmm_aligner.py'
2024-04-24T03:07:32,465   adding 'gtdbtk/external/mash.py'
2024-04-24T03:07:32,468   adding 'gtdbtk/external/pfam_search.py'
2024-04-24T03:07:32,473   adding 'gtdbtk/external/pplacer.py'
2024-04-24T03:07:32,477   adding 'gtdbtk/external/prodigal.py'
2024-04-24T03:07:32,481   adding 'gtdbtk/external/skani.py'
2024-04-24T03:07:32,485   adding 'gtdbtk/external/tigrfam_search.py'
2024-04-24T03:07:32,489   adding 'gtdbtk/external/pypfam/__init__.py'
2024-04-24T03:07:32,493   adding 'gtdbtk/external/pypfam/HMM/HMMMatch.py'
2024-04-24T03:07:32,496   adding 'gtdbtk/external/pypfam/HMM/HMMResults.py'
2024-04-24T03:07:32,502   adding 'gtdbtk/external/pypfam/HMM/HMMResultsIO.py'
2024-04-24T03:07:32,505   adding 'gtdbtk/external/pypfam/HMM/HMMSequence.py'
2024-04-24T03:07:32,508   adding 'gtdbtk/external/pypfam/HMM/HMMUnit.py'
2024-04-24T03:07:32,510   adding 'gtdbtk/external/pypfam/HMM/__init__.py'
2024-04-24T03:07:32,518   adding 'gtdbtk/external/pypfam/Scan/PfamScan.py'
2024-04-24T03:07:32,520   adding 'gtdbtk/external/pypfam/Scan/__init__.py'
2024-04-24T03:07:32,524   adding 'gtdbtk/files/__init__.py'
2024-04-24T03:07:32,527   adding 'gtdbtk/files/batchfile.py'
2024-04-24T03:07:32,531   adding 'gtdbtk/files/classify_summary.py'
2024-04-24T03:07:32,533   adding 'gtdbtk/files/gtdb_radii.py'
2024-04-24T03:07:32,536   adding 'gtdbtk/files/marker_info.py'
2024-04-24T03:07:32,539   adding 'gtdbtk/files/missing_genomes.py'
2024-04-24T03:07:32,543   adding 'gtdbtk/files/pplacer_classification.py'
2024-04-24T03:07:32,546   adding 'gtdbtk/files/red_dict.py'
2024-04-24T03:07:32,549   adding 'gtdbtk/files/stage_logger.py'
2024-04-24T03:07:32,553   adding 'gtdbtk/files/tree_mapping.py'
2024-04-24T03:07:32,556   adding 'gtdbtk/files/marker/__init__.py'
2024-04-24T03:07:32,561   adding 'gtdbtk/files/marker/copy_number.py'
2024-04-24T03:07:32,565   adding 'gtdbtk/files/marker/tophit.py'
2024-04-24T03:07:32,568   adding 'gtdbtk/files/prodigal/__init__.py'
2024-04-24T03:07:32,571   adding 'gtdbtk/files/prodigal/tln_table.py'
2024-04-24T03:07:32,574   adding 'gtdbtk/files/prodigal/tln_table_summary.py'
2024-04-24T03:07:32,578   adding 'gtdbtk/model/__init__.py'
2024-04-24T03:07:32,580   adding 'gtdbtk/model/enum.py'
2024-04-24T03:07:32,584   adding 'gtdbtk/pipeline/__init__.py'
2024-04-24T03:07:32,588   adding 'gtdbtk/pipeline/align.py'
2024-04-24T03:07:32,590   adding 'gtdbtk/pipeline/export_msa.py'
2024-04-24T03:07:36,660   adding 'gtdbtk/tests/data/genomes/genome_1.fna'
2024-04-24T03:07:38,526   adding 'gtdbtk/tests/data/genomes/genome_2.fna'
2024-04-24T03:07:40,299   adding 'gtdbtk/tests/data/genomes/genome_3.fna'
2024-04-24T03:07:40,340   adding 'gtdbtk-2.4.0.data/data/LICENSE'
2024-04-24T03:07:40,348   adding 'tests/__init__.py'
2024-04-24T03:07:40,351   adding 'tests/common.py'
2024-04-24T03:07:40,355   adding 'tests/test_classify.py'
2024-04-24T03:07:40,359   adding 'tests/test_cli.py'
2024-04-24T03:07:40,363   adding 'tests/test_gtdbtk/__init__.py'
2024-04-24T03:07:40,367   adding 'tests/test_gtdbtk/test__main__.py'
2024-04-24T03:07:40,372   adding 'tests/test_gtdbtk/test_main.py'
2024-04-24T03:07:40,375   adding 'tests/test_gtdbtk/test_markers.py'
2024-04-24T03:07:40,379   adding 'tests/test_gtdbtk/test_tools.py'
2024-04-24T03:07:40,382   adding 'tests/test_gtdbtk/test_trim_msa.py'
2024-04-24T03:07:40,386   adding 'tests/test_gtdbtk/test_biolib_lite/__init__.py'
2024-04-24T03:07:40,389   adding 'tests/test_gtdbtk/test_biolib_lite/test_common.py'
2024-04-24T03:07:40,392   adding 'tests/test_gtdbtk/test_biolib_lite/test_newick.py'
2024-04-24T03:07:40,395   adding 'tests/test_gtdbtk/test_biolib_lite/test_seq_io.py'
2024-04-24T03:07:40,398   adding 'tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py'
2024-04-24T03:07:40,402   adding 'tests/test_gtdbtk/test_external/__init__.py'
2024-04-24T03:07:40,405   adding 'tests/test_gtdbtk/test_external/test_fastani.py'
2024-04-24T03:07:40,408   adding 'tests/test_gtdbtk/test_external/test_fasttree.py'
2024-04-24T03:07:40,411   adding 'tests/test_gtdbtk/test_external/test_skani.py'
2024-04-24T03:07:40,415   adding 'tests/test_gtdbtk/test_files/__init__.py'
2024-04-24T03:07:40,419   adding 'tests/test_gtdbtk/test_files/test_marker/__init__.py'
2024-04-24T03:07:40,423   adding 'tests/test_gtdbtk/test_files/test_marker/test_copy_number.py'
2024-04-24T03:07:40,426   adding 'tests/test_gtdbtk/test_files/test_marker/test_tophit.py'
2024-04-24T03:07:40,430   adding 'tests/test_gtdbtk/test_files/test_prodigal/__init__.py'
2024-04-24T03:07:40,433   adding 'tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py'
2024-04-24T03:07:40,448   adding 'gtdbtk-2.4.0.dist-info/LICENSE'
2024-04-24T03:07:40,452   adding 'gtdbtk-2.4.0.dist-info/METADATA'
2024-04-24T03:07:40,455   adding 'gtdbtk-2.4.0.dist-info/WHEEL'
2024-04-24T03:07:40,457   adding 'gtdbtk-2.4.0.dist-info/entry_points.txt'
2024-04-24T03:07:40,459   adding 'gtdbtk-2.4.0.dist-info/top_level.txt'
2024-04-24T03:07:40,462   adding 'gtdbtk-2.4.0.dist-info/RECORD'
2024-04-24T03:07:40,536   removing build/bdist.linux-armv7l/wheel
2024-04-24T03:07:40,835   Building wheel for gtdbtk (setup.py): finished with status 'done'
2024-04-24T03:07:40,896   Created wheel for gtdbtk: filename=gtdbtk-2.4.0-py3-none-any.whl size=1835285 sha256=f5b31cd6e00e0b691402e09fdb204880d4ed1075c42ab8da50dfc41bdc0796cf
2024-04-24T03:07:40,898   Stored in directory: /tmp/pip-ephem-wheel-cache-13blyxdm/wheels/25/fe/22/b30bc2b462536cc7e852b1b8b5cf8f1d8da6b9479da9a1a64e
2024-04-24T03:07:40,942 Successfully built gtdbtk
2024-04-24T03:07:41,094 Removed build tracker: '/tmp/pip-build-tracker-1rc9ldnz'