2024-04-26T06:01:04,518 Created temporary directory: /tmp/pip-build-tracker-fniuim_y 2024-04-26T06:01:04,519 Initialized build tracking at /tmp/pip-build-tracker-fniuim_y 2024-04-26T06:01:04,520 Created build tracker: /tmp/pip-build-tracker-fniuim_y 2024-04-26T06:01:04,520 Entered build tracker: /tmp/pip-build-tracker-fniuim_y 2024-04-26T06:01:04,521 Created temporary directory: /tmp/pip-wheel-gibi22n5 2024-04-26T06:01:04,524 Created temporary directory: /tmp/pip-ephem-wheel-cache-9roo0s6x 2024-04-26T06:01:04,546 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-26T06:01:04,549 2 location(s) to search for versions of nnunetv2: 2024-04-26T06:01:04,549 * https://pypi.org/simple/nnunetv2/ 2024-04-26T06:01:04,549 * https://www.piwheels.org/simple/nnunetv2/ 2024-04-26T06:01:04,550 Fetching project page and analyzing links: https://pypi.org/simple/nnunetv2/ 2024-04-26T06:01:04,550 Getting page https://pypi.org/simple/nnunetv2/ 2024-04-26T06:01:04,552 Found index url https://pypi.org/simple/ 2024-04-26T06:01:04,765 Fetched page https://pypi.org/simple/nnunetv2/ as application/vnd.pypi.simple.v1+json 2024-04-26T06:01:04,768 Found link https://files.pythonhosted.org/packages/e9/76/b07d94295b8680333c267420cb8fe68780c1f0330b01f83de221e14398f8/nnunetv2-2.0.tar.gz (from https://pypi.org/simple/nnunetv2/), version: 2.0 2024-04-26T06:01:04,769 Found link https://files.pythonhosted.org/packages/ec/d6/1db7ccf9b55e60ef9f1201ce7086b69dc87e4a0ace0a9779d7763097ff4f/nnunetv2-2.1.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.1 2024-04-26T06:01:04,770 Found link https://files.pythonhosted.org/packages/75/0c/970bded1a4462ac6dfe97aaa8cfe2ae96e24597d26da6a3d7be829832bb3/nnunetv2-2.1.2.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.1.2 2024-04-26T06:01:04,771 Found link https://files.pythonhosted.org/packages/23/ec/d5a80410ed705da963c4df59ae27bea4d28ca2861949275751c2087706c2/nnunetv2-2.2.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.2 2024-04-26T06:01:04,772 Found link https://files.pythonhosted.org/packages/cc/34/e089ded4d1fbe0dabca3f5c23b47c73c3ace4c5666cb5fdaeb2083a28e62/nnunetv2-2.2.1.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.2.1 2024-04-26T06:01:04,772 Skipping link: No binaries permitted for nnunetv2: https://files.pythonhosted.org/packages/e8/d5/cac9ff935351af33fa3c65ad5c24435d38425fbec420fc40af8397eb0134/nnunetv2-2.2.2-py3-none-any.whl (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-26T06:01:04,773 Found link https://files.pythonhosted.org/packages/dd/39/eb52587961d684992f454bd08be0afa495e6b25a75a4c20001401c7c3f00/nnunetv2-2.2.2.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.2.2 2024-04-26T06:01:04,774 Found link https://files.pythonhosted.org/packages/e1/fd/a92675fb9f266be88eb06db41813021cbcb22af7ca384f8442343bfa050c/nnunetv2-2.3.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.3 2024-04-26T06:01:04,775 Found link https://files.pythonhosted.org/packages/86/d6/7288221cfb95b5b2453c55dc50bbb9843ef1706039da76e41efef850539a/nnunetv2-2.3.1.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.3.1 2024-04-26T06:01:04,777 Found link https://files.pythonhosted.org/packages/a3/f1/b35bb040e3c46f0041aa7a39f687117eadfb2bdd5f96536613398752da7a/nnunetv2-2.4.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.4 2024-04-26T06:01:04,777 Found link https://files.pythonhosted.org/packages/f9/67/d5586912ac20b56ac524b9c2d032d68ea3caa22229bf00ccc44ddcdbc2ba/nnunetv2-2.4.1.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.4.1 2024-04-26T06:01:04,778 Found link https://files.pythonhosted.org/packages/9b/84/ab721bc31bfdafaf199cd78913b29d9413b993c27028572a1487231e343f/nnunetv2-2.4.2.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.4.2 2024-04-26T06:01:04,779 Fetching project page and analyzing links: https://www.piwheels.org/simple/nnunetv2/ 2024-04-26T06:01:04,780 Getting page https://www.piwheels.org/simple/nnunetv2/ 2024-04-26T06:01:04,782 Found index url https://www.piwheels.org/simple/ 2024-04-26T06:01:04,969 Fetched page https://www.piwheels.org/simple/nnunetv2/ as text/html 2024-04-26T06:01:04,973 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.4.1-py3-none-any.whl#sha256=3d9a367df554358823af9450e4ecb016d33eacd95557aebf8928a429c292b012 (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-26T06:01:04,974 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.4-py3-none-any.whl#sha256=ed3fa482926c65d5a852e31ad670a81f9f0298e88277533ed475de7552583f5c (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-26T06:01:04,974 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.3.1-py3-none-any.whl#sha256=8a157ab8d25b32771a67e272e64fa8dbb2aa5e70f2b6a4f58810eabe98a6bb6b (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-26T06:01:04,975 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.3-py3-none-any.whl#sha256=3a5d671ead32c5efc273b3ac522963b258900dcad9465d980446750ff4329275 (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-26T06:01:04,975 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.2.2-py3-none-any.whl#sha256=04c98805751a155047b961fc65c37582ed9b9804cbc628bd7bca38cf3ba1cd4f (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-26T06:01:04,976 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.2.1-py3-none-any.whl#sha256=382d4f06ffe8d21ba4a15b6b278570a58b5185ddeec2b4840185f5fe6bc1faad (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-26T06:01:04,976 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.2-py3-none-any.whl#sha256=cead7a9af00a7bae7c46333d240c36c082516e6c2449992d0310326d844c0bd7 (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-26T06:01:04,977 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.1.2-py3-none-any.whl#sha256=cbd7dda5e9ec83dff80a22a1493aee15145e11cabc0783dd921d613484f08b77 (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-26T06:01:04,977 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.1-py3-none-any.whl#sha256=1aaa6b18e813f011d50ac92dd2b1a35512438d54a3dd7d63dc8dee150c5ab3ee (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2024-04-26T06:01:04,978 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.0-py3-none-any.whl#sha256=fdacc5b6c5ae86113368c37f25e21643894052a24c65235ffff6c37a0d1a7b31 (from https://www.piwheels.org/simple/nnunetv2/) 2024-04-26T06:01:04,979 Skipping link: not a file: https://www.piwheels.org/simple/nnunetv2/ 2024-04-26T06:01:04,979 Skipping link: not a file: https://pypi.org/simple/nnunetv2/ 2024-04-26T06:01:04,999 Given no hashes to check 1 links for project 'nnunetv2': discarding no candidates 2024-04-26T06:01:05,017 Collecting nnunetv2==2.4.2 2024-04-26T06:01:05,020 Created temporary directory: /tmp/pip-unpack-ncbgval8 2024-04-26T06:01:05,155 Downloading nnunetv2-2.4.2.tar.gz (184 kB) 2024-04-26T06:01:05,584 Added nnunetv2==2.4.2 from https://files.pythonhosted.org/packages/9b/84/ab721bc31bfdafaf199cd78913b29d9413b993c27028572a1487231e343f/nnunetv2-2.4.2.tar.gz to build tracker '/tmp/pip-build-tracker-fniuim_y' 2024-04-26T06:01:05,590 Created temporary directory: /tmp/pip-build-env-8wdaeclh 2024-04-26T06:01:05,595 Installing build dependencies: started 2024-04-26T06:01:05,596 Running command pip subprocess to install build dependencies 2024-04-26T06:01:06,767 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-26T06:01:07,279 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-26T06:01:08,711 Collecting setuptools>=67.8.0 2024-04-26T06:01:08,726 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-04-26T06:01:11,369 Installing collected packages: setuptools 2024-04-26T06:01:13,811 Successfully installed setuptools-69.5.1 2024-04-26T06:01:14,326 Installing build dependencies: finished with status 'done' 2024-04-26T06:01:14,330 Getting requirements to build wheel: started 2024-04-26T06:01:14,331 Running command Getting requirements to build wheel 2024-04-26T06:01:15,145 running egg_info 2024-04-26T06:01:15,149 writing nnunetv2.egg-info/PKG-INFO 2024-04-26T06:01:15,154 writing dependency_links to nnunetv2.egg-info/dependency_links.txt 2024-04-26T06:01:15,157 writing entry points to nnunetv2.egg-info/entry_points.txt 2024-04-26T06:01:15,160 writing requirements to nnunetv2.egg-info/requires.txt 2024-04-26T06:01:15,161 writing top-level names to nnunetv2.egg-info/top_level.txt 2024-04-26T06:01:15,219 reading manifest file 'nnunetv2.egg-info/SOURCES.txt' 2024-04-26T06:01:15,225 adding license file 'LICENSE' 2024-04-26T06:01:15,234 writing manifest file 'nnunetv2.egg-info/SOURCES.txt' 2024-04-26T06:01:15,347 Getting requirements to build wheel: finished with status 'done' 2024-04-26T06:01:15,355 Installing backend dependencies: started 2024-04-26T06:01:15,356 Running command pip subprocess to install backend dependencies 2024-04-26T06:01:16,496 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-26T06:01:17,002 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-26T06:01:17,487 Collecting wheel 2024-04-26T06:01:17,502 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-26T06:01:19,791 Installing collected packages: wheel 2024-04-26T06:01:20,022 Creating /tmp/pip-build-env-8wdaeclh/normal/local/bin 2024-04-26T06:01:20,024 changing mode of /tmp/pip-build-env-8wdaeclh/normal/local/bin/wheel to 755 2024-04-26T06:01:20,036 Successfully installed wheel-0.43.0 2024-04-26T06:01:20,516 Installing backend dependencies: finished with status 'done' 2024-04-26T06:01:20,518 Created temporary directory: /tmp/pip-modern-metadata-1tj9yzvc 2024-04-26T06:01:20,520 Preparing metadata (pyproject.toml): started 2024-04-26T06:01:20,521 Running command Preparing metadata (pyproject.toml) 2024-04-26T06:01:21,393 running dist_info 2024-04-26T06:01:21,398 creating /tmp/pip-modern-metadata-1tj9yzvc/nnunetv2.egg-info 2024-04-26T06:01:21,402 writing /tmp/pip-modern-metadata-1tj9yzvc/nnunetv2.egg-info/PKG-INFO 2024-04-26T06:01:21,407 writing dependency_links to /tmp/pip-modern-metadata-1tj9yzvc/nnunetv2.egg-info/dependency_links.txt 2024-04-26T06:01:21,410 writing entry points to /tmp/pip-modern-metadata-1tj9yzvc/nnunetv2.egg-info/entry_points.txt 2024-04-26T06:01:21,412 writing requirements to /tmp/pip-modern-metadata-1tj9yzvc/nnunetv2.egg-info/requires.txt 2024-04-26T06:01:21,413 writing top-level names to /tmp/pip-modern-metadata-1tj9yzvc/nnunetv2.egg-info/top_level.txt 2024-04-26T06:01:21,415 writing manifest file '/tmp/pip-modern-metadata-1tj9yzvc/nnunetv2.egg-info/SOURCES.txt' 2024-04-26T06:01:21,486 reading manifest file '/tmp/pip-modern-metadata-1tj9yzvc/nnunetv2.egg-info/SOURCES.txt' 2024-04-26T06:01:21,488 adding license file 'LICENSE' 2024-04-26T06:01:21,494 writing manifest file '/tmp/pip-modern-metadata-1tj9yzvc/nnunetv2.egg-info/SOURCES.txt' 2024-04-26T06:01:21,496 creating '/tmp/pip-modern-metadata-1tj9yzvc/nnunetv2-2.4.2.dist-info' 2024-04-26T06:01:21,656 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-26T06:01:21,664 Source in /tmp/pip-wheel-gibi22n5/nnunetv2_c177a6ca9a514db7a30a92dc51f6b0d3 has version 2.4.2, which satisfies requirement nnunetv2==2.4.2 from https://files.pythonhosted.org/packages/9b/84/ab721bc31bfdafaf199cd78913b29d9413b993c27028572a1487231e343f/nnunetv2-2.4.2.tar.gz 2024-04-26T06:01:21,665 Removed nnunetv2==2.4.2 from https://files.pythonhosted.org/packages/9b/84/ab721bc31bfdafaf199cd78913b29d9413b993c27028572a1487231e343f/nnunetv2-2.4.2.tar.gz from build tracker '/tmp/pip-build-tracker-fniuim_y' 2024-04-26T06:01:21,676 Created temporary directory: /tmp/pip-unpack-9gy1yxmm 2024-04-26T06:01:21,677 Created temporary directory: /tmp/pip-unpack-winqe3p9 2024-04-26T06:01:21,713 Building wheels for collected packages: nnunetv2 2024-04-26T06:01:21,718 Created temporary directory: /tmp/pip-wheel-zxwzau6p 2024-04-26T06:01:21,718 Destination directory: /tmp/pip-wheel-zxwzau6p 2024-04-26T06:01:21,721 Building wheel for nnunetv2 (pyproject.toml): started 2024-04-26T06:01:21,722 Running command Building wheel for nnunetv2 (pyproject.toml) 2024-04-26T06:01:22,527 running bdist_wheel 2024-04-26T06:01:22,543 running build 2024-04-26T06:01:22,543 running build_py 2024-04-26T06:01:22,548 creating build 2024-04-26T06:01:22,548 creating build/lib 2024-04-26T06:01:22,549 creating build/lib/nnunetv2 2024-04-26T06:01:22,550 copying nnunetv2/configuration.py -> build/lib/nnunetv2 2024-04-26T06:01:22,552 copying nnunetv2/__init__.py -> build/lib/nnunetv2 2024-04-26T06:01:22,553 copying nnunetv2/paths.py -> build/lib/nnunetv2 2024-04-26T06:01:22,556 creating build/lib/nnunetv2/utilities 2024-04-26T06:01:22,557 copying nnunetv2/utilities/json_export.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,559 copying nnunetv2/utilities/ddp_allgather.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,561 copying nnunetv2/utilities/collate_outputs.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,562 copying nnunetv2/utilities/network_initialization.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,564 copying nnunetv2/utilities/overlay_plots.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,566 copying nnunetv2/utilities/file_path_utilities.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,569 copying nnunetv2/utilities/__init__.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,570 copying nnunetv2/utilities/find_class_by_name.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,572 copying nnunetv2/utilities/crossval_split.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,573 copying nnunetv2/utilities/get_network_from_plans.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,575 copying nnunetv2/utilities/dataset_name_id_conversion.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,577 copying nnunetv2/utilities/default_n_proc_DA.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,579 copying nnunetv2/utilities/utils.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,581 copying nnunetv2/utilities/helpers.py -> build/lib/nnunetv2/utilities 2024-04-26T06:01:22,583 creating build/lib/nnunetv2/postprocessing 2024-04-26T06:01:22,584 copying nnunetv2/postprocessing/remove_connected_components.py -> build/lib/nnunetv2/postprocessing 2024-04-26T06:01:22,587 copying nnunetv2/postprocessing/__init__.py -> build/lib/nnunetv2/postprocessing 2024-04-26T06:01:22,589 creating build/lib/nnunetv2/model_sharing 2024-04-26T06:01:22,590 copying nnunetv2/model_sharing/model_download.py -> build/lib/nnunetv2/model_sharing 2024-04-26T06:01:22,592 copying nnunetv2/model_sharing/entry_points.py -> build/lib/nnunetv2/model_sharing 2024-04-26T06:01:22,594 copying nnunetv2/model_sharing/__init__.py -> build/lib/nnunetv2/model_sharing 2024-04-26T06:01:22,596 copying nnunetv2/model_sharing/model_import.py -> build/lib/nnunetv2/model_sharing 2024-04-26T06:01:22,598 copying nnunetv2/model_sharing/model_export.py -> build/lib/nnunetv2/model_sharing 2024-04-26T06:01:22,601 creating build/lib/nnunetv2/experiment_planning 2024-04-26T06:01:22,602 copying nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/lib/nnunetv2/experiment_planning 2024-04-26T06:01:22,605 copying nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/lib/nnunetv2/experiment_planning 2024-04-26T06:01:22,607 copying nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/lib/nnunetv2/experiment_planning 2024-04-26T06:01:22,609 copying nnunetv2/experiment_planning/__init__.py -> build/lib/nnunetv2/experiment_planning 2024-04-26T06:01:22,611 creating build/lib/nnunetv2/inference 2024-04-26T06:01:22,612 copying nnunetv2/inference/export_prediction.py -> build/lib/nnunetv2/inference 2024-04-26T06:01:22,615 copying nnunetv2/inference/examples.py -> build/lib/nnunetv2/inference 2024-04-26T06:01:22,617 copying nnunetv2/inference/data_iterators.py -> build/lib/nnunetv2/inference 2024-04-26T06:01:22,619 copying nnunetv2/inference/predict_from_raw_data.py -> build/lib/nnunetv2/inference 2024-04-26T06:01:22,623 copying nnunetv2/inference/__init__.py -> build/lib/nnunetv2/inference 2024-04-26T06:01:22,624 copying nnunetv2/inference/sliding_window_prediction.py -> build/lib/nnunetv2/inference 2024-04-26T06:01:22,626 creating build/lib/nnunetv2/preprocessing 2024-04-26T06:01:22,627 copying nnunetv2/preprocessing/__init__.py -> build/lib/nnunetv2/preprocessing 2024-04-26T06:01:22,629 creating build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,630 copying nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,632 copying nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,634 copying nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,636 copying nnunetv2/dataset_conversion/generate_dataset_json.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,638 copying nnunetv2/dataset_conversion/Dataset114_MNMs.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,640 copying nnunetv2/dataset_conversion/__init__.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,641 copying nnunetv2/dataset_conversion/Dataset220_KiTS2023.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,643 copying nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,645 copying nnunetv2/dataset_conversion/Dataset115_EMIDEC.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,647 copying nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,649 copying nnunetv2/dataset_conversion/Dataset223_AMOS2022postChallenge.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,651 copying nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,653 copying nnunetv2/dataset_conversion/Dataset027_ACDC.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,655 copying nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,657 copying nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,659 copying nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/lib/nnunetv2/dataset_conversion 2024-04-26T06:01:22,661 creating build/lib/nnunetv2/run 2024-04-26T06:01:22,662 copying nnunetv2/run/__init__.py -> build/lib/nnunetv2/run 2024-04-26T06:01:22,664 copying nnunetv2/run/load_pretrained_weights.py -> build/lib/nnunetv2/run 2024-04-26T06:01:22,666 copying nnunetv2/run/run_training.py -> build/lib/nnunetv2/run 2024-04-26T06:01:22,669 creating build/lib/nnunetv2/tests 2024-04-26T06:01:22,670 copying nnunetv2/tests/__init__.py -> build/lib/nnunetv2/tests 2024-04-26T06:01:22,672 creating build/lib/nnunetv2/evaluation 2024-04-26T06:01:22,673 copying nnunetv2/evaluation/__init__.py -> build/lib/nnunetv2/evaluation 2024-04-26T06:01:22,675 copying nnunetv2/evaluation/accumulate_cv_results.py -> build/lib/nnunetv2/evaluation 2024-04-26T06:01:22,677 copying nnunetv2/evaluation/evaluate_predictions.py -> build/lib/nnunetv2/evaluation 2024-04-26T06:01:22,679 copying nnunetv2/evaluation/find_best_configuration.py -> build/lib/nnunetv2/evaluation 2024-04-26T06:01:22,682 creating build/lib/nnunetv2/training 2024-04-26T06:01:22,683 copying nnunetv2/training/__init__.py -> build/lib/nnunetv2/training 2024-04-26T06:01:22,685 creating build/lib/nnunetv2/imageio 2024-04-26T06:01:22,686 copying nnunetv2/imageio/tif_reader_writer.py -> build/lib/nnunetv2/imageio 2024-04-26T06:01:22,688 copying nnunetv2/imageio/reader_writer_registry.py -> build/lib/nnunetv2/imageio 2024-04-26T06:01:22,690 copying nnunetv2/imageio/nibabel_reader_writer.py -> build/lib/nnunetv2/imageio 2024-04-26T06:01:22,692 copying nnunetv2/imageio/simpleitk_reader_writer.py -> build/lib/nnunetv2/imageio 2024-04-26T06:01:22,695 copying nnunetv2/imageio/__init__.py -> build/lib/nnunetv2/imageio 2024-04-26T06:01:22,696 copying nnunetv2/imageio/base_reader_writer.py -> build/lib/nnunetv2/imageio 2024-04-26T06:01:22,698 copying nnunetv2/imageio/natural_image_reader_writer.py -> build/lib/nnunetv2/imageio 2024-04-26T06:01:22,700 creating build/lib/nnunetv2/ensembling 2024-04-26T06:01:22,701 copying nnunetv2/ensembling/__init__.py -> build/lib/nnunetv2/ensembling 2024-04-26T06:01:22,703 copying nnunetv2/ensembling/ensemble.py -> build/lib/nnunetv2/ensembling 2024-04-26T06:01:22,706 creating build/lib/nnunetv2/batch_running 2024-04-26T06:01:22,707 copying nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/lib/nnunetv2/batch_running 2024-04-26T06:01:22,709 copying nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/lib/nnunetv2/batch_running 2024-04-26T06:01:22,710 copying nnunetv2/batch_running/__init__.py -> build/lib/nnunetv2/batch_running 2024-04-26T06:01:22,712 copying nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/lib/nnunetv2/batch_running 2024-04-26T06:01:22,714 creating build/lib/nnunetv2/utilities/plans_handling 2024-04-26T06:01:22,715 copying nnunetv2/utilities/plans_handling/__init__.py -> build/lib/nnunetv2/utilities/plans_handling 2024-04-26T06:01:22,717 copying nnunetv2/utilities/plans_handling/plans_handler.py -> build/lib/nnunetv2/utilities/plans_handling 2024-04-26T06:01:22,720 creating build/lib/nnunetv2/utilities/label_handling 2024-04-26T06:01:22,720 copying nnunetv2/utilities/label_handling/label_handling.py -> build/lib/nnunetv2/utilities/label_handling 2024-04-26T06:01:22,723 copying nnunetv2/utilities/label_handling/__init__.py -> build/lib/nnunetv2/utilities/label_handling 2024-04-26T06:01:22,725 creating build/lib/nnunetv2/experiment_planning/dataset_fingerprint 2024-04-26T06:01:22,726 copying nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint 2024-04-26T06:01:22,728 copying nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint 2024-04-26T06:01:22,730 creating build/lib/nnunetv2/experiment_planning/experiment_planners 2024-04-26T06:01:22,731 copying nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2024-04-26T06:01:22,734 copying nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2024-04-26T06:01:22,736 copying nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2024-04-26T06:01:22,738 copying nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2024-04-26T06:01:22,741 creating build/lib/nnunetv2/experiment_planning/plans_for_pretraining 2024-04-26T06:01:22,742 copying nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining 2024-04-26T06:01:22,743 copying nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining 2024-04-26T06:01:22,746 creating build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-04-26T06:01:22,747 copying nnunetv2/experiment_planning/experiment_planners/residual_unets/__init__.py -> build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-04-26T06:01:22,749 copying nnunetv2/experiment_planning/experiment_planners/residual_unets/residual_encoder_unet_planners.py -> build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-04-26T06:01:22,752 creating build/lib/nnunetv2/preprocessing/cropping 2024-04-26T06:01:22,752 copying nnunetv2/preprocessing/cropping/cropping.py -> build/lib/nnunetv2/preprocessing/cropping 2024-04-26T06:01:22,754 copying nnunetv2/preprocessing/cropping/__init__.py -> build/lib/nnunetv2/preprocessing/cropping 2024-04-26T06:01:22,756 creating build/lib/nnunetv2/preprocessing/preprocessors 2024-04-26T06:01:22,757 copying nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/lib/nnunetv2/preprocessing/preprocessors 2024-04-26T06:01:22,760 copying nnunetv2/preprocessing/preprocessors/__init__.py -> build/lib/nnunetv2/preprocessing/preprocessors 2024-04-26T06:01:22,762 creating build/lib/nnunetv2/preprocessing/resampling 2024-04-26T06:01:22,763 copying nnunetv2/preprocessing/resampling/__init__.py -> build/lib/nnunetv2/preprocessing/resampling 2024-04-26T06:01:22,764 copying nnunetv2/preprocessing/resampling/default_resampling.py -> build/lib/nnunetv2/preprocessing/resampling 2024-04-26T06:01:22,767 copying nnunetv2/preprocessing/resampling/utils.py -> build/lib/nnunetv2/preprocessing/resampling 2024-04-26T06:01:22,769 creating build/lib/nnunetv2/preprocessing/normalization 2024-04-26T06:01:22,770 copying nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/lib/nnunetv2/preprocessing/normalization 2024-04-26T06:01:22,773 copying nnunetv2/preprocessing/normalization/__init__.py -> build/lib/nnunetv2/preprocessing/normalization 2024-04-26T06:01:22,774 copying nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/lib/nnunetv2/preprocessing/normalization 2024-04-26T06:01:22,776 creating build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-26T06:01:22,777 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-26T06:01:22,779 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-26T06:01:22,781 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-26T06:01:22,786 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-26T06:01:22,788 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-26T06:01:22,790 creating build/lib/nnunetv2/tests/integration_tests 2024-04-26T06:01:22,791 copying nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/lib/nnunetv2/tests/integration_tests 2024-04-26T06:01:22,794 copying nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/lib/nnunetv2/tests/integration_tests 2024-04-26T06:01:22,796 copying nnunetv2/tests/integration_tests/__init__.py -> build/lib/nnunetv2/tests/integration_tests 2024-04-26T06:01:22,797 copying nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/lib/nnunetv2/tests/integration_tests 2024-04-26T06:01:22,800 creating build/lib/nnunetv2/training/nnUNetTrainer 2024-04-26T06:01:22,801 copying nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/lib/nnunetv2/training/nnUNetTrainer 2024-04-26T06:01:22,805 copying nnunetv2/training/nnUNetTrainer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer 2024-04-26T06:01:22,807 creating build/lib/nnunetv2/training/lr_scheduler 2024-04-26T06:01:22,808 copying nnunetv2/training/lr_scheduler/__init__.py -> build/lib/nnunetv2/training/lr_scheduler 2024-04-26T06:01:22,809 copying nnunetv2/training/lr_scheduler/polylr.py -> build/lib/nnunetv2/training/lr_scheduler 2024-04-26T06:01:22,812 creating build/lib/nnunetv2/training/data_augmentation 2024-04-26T06:01:22,812 copying nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/lib/nnunetv2/training/data_augmentation 2024-04-26T06:01:22,814 copying nnunetv2/training/data_augmentation/__init__.py -> build/lib/nnunetv2/training/data_augmentation 2024-04-26T06:01:22,817 creating build/lib/nnunetv2/training/loss 2024-04-26T06:01:22,818 copying nnunetv2/training/loss/deep_supervision.py -> build/lib/nnunetv2/training/loss 2024-04-26T06:01:22,820 copying nnunetv2/training/loss/dice.py -> build/lib/nnunetv2/training/loss 2024-04-26T06:01:22,822 copying nnunetv2/training/loss/__init__.py -> build/lib/nnunetv2/training/loss 2024-04-26T06:01:22,824 copying nnunetv2/training/loss/robust_ce_loss.py -> build/lib/nnunetv2/training/loss 2024-04-26T06:01:22,826 copying nnunetv2/training/loss/compound_losses.py -> build/lib/nnunetv2/training/loss 2024-04-26T06:01:22,828 creating build/lib/nnunetv2/training/dataloading 2024-04-26T06:01:22,829 copying nnunetv2/training/dataloading/nnunet_dataset.py -> build/lib/nnunetv2/training/dataloading 2024-04-26T06:01:22,832 copying nnunetv2/training/dataloading/base_data_loader.py -> build/lib/nnunetv2/training/dataloading 2024-04-26T06:01:22,834 copying nnunetv2/training/dataloading/data_loader_3d.py -> build/lib/nnunetv2/training/dataloading 2024-04-26T06:01:22,836 copying nnunetv2/training/dataloading/__init__.py -> build/lib/nnunetv2/training/dataloading 2024-04-26T06:01:22,837 copying nnunetv2/training/dataloading/data_loader_2d.py -> build/lib/nnunetv2/training/dataloading 2024-04-26T06:01:22,839 copying nnunetv2/training/dataloading/utils.py -> build/lib/nnunetv2/training/dataloading 2024-04-26T06:01:22,842 creating build/lib/nnunetv2/training/logging 2024-04-26T06:01:22,843 copying nnunetv2/training/logging/__init__.py -> build/lib/nnunetv2/training/logging 2024-04-26T06:01:22,844 copying nnunetv2/training/logging/nnunet_logger.py -> build/lib/nnunetv2/training/logging 2024-04-26T06:01:22,847 creating build/lib/nnunetv2/training/nnUNetTrainer/variants 2024-04-26T06:01:22,848 copying nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants 2024-04-26T06:01:22,850 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-26T06:01:22,851 copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-26T06:01:22,853 copying nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-26T06:01:22,855 copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-26T06:01:22,857 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-26T06:01:22,858 copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-26T06:01:22,860 copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-26T06:01:22,862 copying nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-26T06:01:22,864 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-04-26T06:01:22,865 copying nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-04-26T06:01:22,867 copying nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-04-26T06:01:22,869 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-26T06:01:22,870 copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-26T06:01:22,871 copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-26T06:01:22,873 copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-26T06:01:22,875 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-04-26T06:01:22,876 copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-04-26T06:01:22,878 copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-04-26T06:01:22,880 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-26T06:01:22,881 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-26T06:01:22,883 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-26T06:01:22,885 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-26T06:01:22,887 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-26T06:01:22,889 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-26T06:01:22,891 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-26T06:01:22,892 copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-26T06:01:22,894 copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-26T06:01:22,895 copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-26T06:01:22,898 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-26T06:01:22,899 copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-26T06:01:22,901 copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-26T06:01:22,903 copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-26T06:01:22,905 copying nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-26T06:01:22,907 creating build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:22,908 copying nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:22,910 copying nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:22,912 copying nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:22,913 copying nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:22,915 copying nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:22,917 copying nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:22,919 copying nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:22,920 copying nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:22,922 creating build/lib/nnunetv2/batch_running/benchmarking 2024-04-26T06:01:22,923 copying nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/lib/nnunetv2/batch_running/benchmarking 2024-04-26T06:01:22,925 copying nnunetv2/batch_running/benchmarking/__init__.py -> build/lib/nnunetv2/batch_running/benchmarking 2024-04-26T06:01:22,927 copying nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/lib/nnunetv2/batch_running/benchmarking 2024-04-26T06:01:22,929 creating build/lib/nnunetv2/batch_running/release_trainings 2024-04-26T06:01:22,930 copying nnunetv2/batch_running/release_trainings/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings 2024-04-26T06:01:22,932 creating build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-26T06:01:22,933 copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-26T06:01:22,934 copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-26T06:01:22,936 copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-26T06:01:22,939 running egg_info 2024-04-26T06:01:22,942 writing nnunetv2.egg-info/PKG-INFO 2024-04-26T06:01:22,947 writing dependency_links to nnunetv2.egg-info/dependency_links.txt 2024-04-26T06:01:22,949 writing entry points to nnunetv2.egg-info/entry_points.txt 2024-04-26T06:01:22,952 writing requirements to nnunetv2.egg-info/requires.txt 2024-04-26T06:01:22,953 writing top-level names to nnunetv2.egg-info/top_level.txt 2024-04-26T06:01:22,994 reading manifest file 'nnunetv2.egg-info/SOURCES.txt' 2024-04-26T06:01:22,999 adding license file 'LICENSE' 2024-04-26T06:01:23,008 writing manifest file 'nnunetv2.egg-info/SOURCES.txt' 2024-04-26T06:01:23,053 installing to build/bdist.linux-armv7l/wheel 2024-04-26T06:01:23,053 running install 2024-04-26T06:01:23,077 running install_lib 2024-04-26T06:01:23,081 creating build/bdist.linux-armv7l 2024-04-26T06:01:23,081 creating build/bdist.linux-armv7l/wheel 2024-04-26T06:01:23,083 creating build/bdist.linux-armv7l/wheel/nnunetv2 2024-04-26T06:01:23,085 creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,086 copying build/lib/nnunetv2/utilities/json_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,088 copying build/lib/nnunetv2/utilities/ddp_allgather.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,090 copying build/lib/nnunetv2/utilities/collate_outputs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,092 copying build/lib/nnunetv2/utilities/network_initialization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,094 creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling 2024-04-26T06:01:23,095 copying build/lib/nnunetv2/utilities/plans_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling 2024-04-26T06:01:23,097 copying build/lib/nnunetv2/utilities/plans_handling/plans_handler.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling 2024-04-26T06:01:23,099 copying build/lib/nnunetv2/utilities/overlay_plots.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,101 copying build/lib/nnunetv2/utilities/file_path_utilities.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,104 copying build/lib/nnunetv2/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,105 copying build/lib/nnunetv2/utilities/find_class_by_name.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,107 creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling 2024-04-26T06:01:23,108 copying build/lib/nnunetv2/utilities/label_handling/label_handling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling 2024-04-26T06:01:23,111 copying build/lib/nnunetv2/utilities/label_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling 2024-04-26T06:01:23,113 copying build/lib/nnunetv2/utilities/crossval_split.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,114 copying build/lib/nnunetv2/utilities/get_network_from_plans.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,116 copying build/lib/nnunetv2/utilities/dataset_name_id_conversion.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,118 copying build/lib/nnunetv2/utilities/default_n_proc_DA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,120 copying build/lib/nnunetv2/utilities/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,122 copying build/lib/nnunetv2/utilities/helpers.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2024-04-26T06:01:23,124 creating build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing 2024-04-26T06:01:23,125 copying build/lib/nnunetv2/postprocessing/remove_connected_components.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing 2024-04-26T06:01:23,128 copying build/lib/nnunetv2/postprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing 2024-04-26T06:01:23,130 creating build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-04-26T06:01:23,131 copying build/lib/nnunetv2/model_sharing/model_download.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-04-26T06:01:23,133 copying build/lib/nnunetv2/model_sharing/entry_points.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-04-26T06:01:23,135 copying build/lib/nnunetv2/model_sharing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-04-26T06:01:23,137 copying build/lib/nnunetv2/model_sharing/model_import.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-04-26T06:01:23,139 copying build/lib/nnunetv2/model_sharing/model_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2024-04-26T06:01:23,142 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-04-26T06:01:23,143 copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-04-26T06:01:23,146 copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-04-26T06:01:23,148 copying build/lib/nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-04-26T06:01:23,151 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint 2024-04-26T06:01:23,152 copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint 2024-04-26T06:01:23,155 copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint 2024-04-26T06:01:23,156 copying build/lib/nnunetv2/experiment_planning/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2024-04-26T06:01:23,158 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-04-26T06:01:23,159 copying build/lib/nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-04-26T06:01:23,162 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-04-26T06:01:23,163 copying build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-04-26T06:01:23,165 copying build/lib/nnunetv2/experiment_planning/experiment_planners/residual_unets/residual_encoder_unet_planners.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners/residual_unets 2024-04-26T06:01:23,168 copying build/lib/nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-04-26T06:01:23,169 copying build/lib/nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-04-26T06:01:23,171 copying build/lib/nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2024-04-26T06:01:23,174 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining 2024-04-26T06:01:23,175 copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining 2024-04-26T06:01:23,177 copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining 2024-04-26T06:01:23,179 copying build/lib/nnunetv2/configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2 2024-04-26T06:01:23,182 creating build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-26T06:01:23,183 copying build/lib/nnunetv2/inference/export_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-26T06:01:23,185 copying build/lib/nnunetv2/inference/examples.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-26T06:01:23,188 copying build/lib/nnunetv2/inference/data_iterators.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-26T06:01:23,191 copying build/lib/nnunetv2/inference/predict_from_raw_data.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-26T06:01:23,194 copying build/lib/nnunetv2/inference/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-26T06:01:23,196 copying build/lib/nnunetv2/inference/sliding_window_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2024-04-26T06:01:23,199 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing 2024-04-26T06:01:23,200 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping 2024-04-26T06:01:23,201 copying build/lib/nnunetv2/preprocessing/cropping/cropping.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping 2024-04-26T06:01:23,203 copying build/lib/nnunetv2/preprocessing/cropping/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping 2024-04-26T06:01:23,205 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors 2024-04-26T06:01:23,206 copying build/lib/nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors 2024-04-26T06:01:23,209 copying build/lib/nnunetv2/preprocessing/preprocessors/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors 2024-04-26T06:01:23,210 copying build/lib/nnunetv2/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing 2024-04-26T06:01:23,213 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-04-26T06:01:23,214 copying build/lib/nnunetv2/preprocessing/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-04-26T06:01:23,215 copying build/lib/nnunetv2/preprocessing/resampling/default_resampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-04-26T06:01:23,218 copying build/lib/nnunetv2/preprocessing/resampling/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2024-04-26T06:01:23,220 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2024-04-26T06:01:23,221 copying build/lib/nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2024-04-26T06:01:23,223 copying build/lib/nnunetv2/preprocessing/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2024-04-26T06:01:23,225 copying build/lib/nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2024-04-26T06:01:23,227 copying build/lib/nnunetv2/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2 2024-04-26T06:01:23,229 creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,230 copying build/lib/nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,232 creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-26T06:01:23,233 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-26T06:01:23,236 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-26T06:01:23,238 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-26T06:01:23,239 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-26T06:01:23,241 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2024-04-26T06:01:23,243 copying build/lib/nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,245 copying build/lib/nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,247 copying build/lib/nnunetv2/dataset_conversion/generate_dataset_json.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,249 copying build/lib/nnunetv2/dataset_conversion/Dataset114_MNMs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,251 copying build/lib/nnunetv2/dataset_conversion/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,253 copying build/lib/nnunetv2/dataset_conversion/Dataset220_KiTS2023.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,255 copying build/lib/nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,257 copying build/lib/nnunetv2/dataset_conversion/Dataset115_EMIDEC.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,259 copying build/lib/nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,262 copying build/lib/nnunetv2/dataset_conversion/Dataset223_AMOS2022postChallenge.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,263 copying build/lib/nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,265 copying build/lib/nnunetv2/dataset_conversion/Dataset027_ACDC.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,268 copying build/lib/nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,270 copying build/lib/nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,272 copying build/lib/nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2024-04-26T06:01:23,274 copying build/lib/nnunetv2/paths.py -> build/bdist.linux-armv7l/wheel/nnunetv2 2024-04-26T06:01:23,276 creating build/bdist.linux-armv7l/wheel/nnunetv2/run 2024-04-26T06:01:23,277 copying build/lib/nnunetv2/run/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run 2024-04-26T06:01:23,279 copying build/lib/nnunetv2/run/load_pretrained_weights.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run 2024-04-26T06:01:23,281 copying build/lib/nnunetv2/run/run_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run 2024-04-26T06:01:23,284 creating build/bdist.linux-armv7l/wheel/nnunetv2/tests 2024-04-26T06:01:23,285 copying build/lib/nnunetv2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests 2024-04-26T06:01:23,287 creating build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-04-26T06:01:23,288 copying build/lib/nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-04-26T06:01:23,291 copying build/lib/nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-04-26T06:01:23,293 copying build/lib/nnunetv2/tests/integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-04-26T06:01:23,294 copying build/lib/nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2024-04-26T06:01:23,297 creating build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-04-26T06:01:23,298 copying build/lib/nnunetv2/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-04-26T06:01:23,300 copying build/lib/nnunetv2/evaluation/accumulate_cv_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-04-26T06:01:23,302 copying build/lib/nnunetv2/evaluation/evaluate_predictions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-04-26T06:01:23,304 copying build/lib/nnunetv2/evaluation/find_best_configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2024-04-26T06:01:23,307 creating build/bdist.linux-armv7l/wheel/nnunetv2/training 2024-04-26T06:01:23,309 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer 2024-04-26T06:01:23,310 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants 2024-04-26T06:01:23,312 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-26T06:01:23,313 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-26T06:01:23,315 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-26T06:01:23,316 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2024-04-26T06:01:23,319 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-26T06:01:23,319 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-26T06:01:23,321 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-26T06:01:23,324 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2024-04-26T06:01:23,326 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-04-26T06:01:23,327 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-04-26T06:01:23,329 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling 2024-04-26T06:01:23,331 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-26T06:01:23,332 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-26T06:01:23,334 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-26T06:01:23,336 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2024-04-26T06:01:23,337 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants 2024-04-26T06:01:23,339 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-04-26T06:01:23,341 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-04-26T06:01:23,362 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2024-04-26T06:01:23,364 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-26T06:01:23,365 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-26T06:01:23,367 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-26T06:01:23,370 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-26T06:01:23,371 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-26T06:01:23,374 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2024-04-26T06:01:23,376 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-26T06:01:23,377 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-26T06:01:23,379 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-26T06:01:23,381 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2024-04-26T06:01:23,383 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-26T06:01:23,384 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-26T06:01:23,386 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-26T06:01:23,388 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-26T06:01:23,390 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2024-04-26T06:01:23,391 copying build/lib/nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer 2024-04-26T06:01:23,395 copying build/lib/nnunetv2/training/nnUNetTrainer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer 2024-04-26T06:01:23,397 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler 2024-04-26T06:01:23,398 copying build/lib/nnunetv2/training/lr_scheduler/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler 2024-04-26T06:01:23,400 copying build/lib/nnunetv2/training/lr_scheduler/polylr.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler 2024-04-26T06:01:23,401 copying build/lib/nnunetv2/training/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training 2024-04-26T06:01:23,404 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation 2024-04-26T06:01:23,405 copying build/lib/nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation 2024-04-26T06:01:23,407 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:23,408 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:23,410 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:23,412 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:23,414 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:23,415 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:23,418 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:23,420 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:23,421 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2024-04-26T06:01:23,423 copying build/lib/nnunetv2/training/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation 2024-04-26T06:01:23,425 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-04-26T06:01:23,426 copying build/lib/nnunetv2/training/loss/deep_supervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-04-26T06:01:23,428 copying build/lib/nnunetv2/training/loss/dice.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-04-26T06:01:23,430 copying build/lib/nnunetv2/training/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-04-26T06:01:23,432 copying build/lib/nnunetv2/training/loss/robust_ce_loss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-04-26T06:01:23,434 copying build/lib/nnunetv2/training/loss/compound_losses.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2024-04-26T06:01:23,437 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-26T06:01:23,437 copying build/lib/nnunetv2/training/dataloading/nnunet_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-26T06:01:23,440 copying build/lib/nnunetv2/training/dataloading/base_data_loader.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-26T06:01:23,442 copying build/lib/nnunetv2/training/dataloading/data_loader_3d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-26T06:01:23,444 copying build/lib/nnunetv2/training/dataloading/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-26T06:01:23,446 copying build/lib/nnunetv2/training/dataloading/data_loader_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-26T06:01:23,448 copying build/lib/nnunetv2/training/dataloading/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2024-04-26T06:01:23,451 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/logging 2024-04-26T06:01:23,452 copying build/lib/nnunetv2/training/logging/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging 2024-04-26T06:01:23,453 copying build/lib/nnunetv2/training/logging/nnunet_logger.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging 2024-04-26T06:01:23,457 creating build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-26T06:01:23,457 copying build/lib/nnunetv2/imageio/tif_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-26T06:01:23,460 copying build/lib/nnunetv2/imageio/reader_writer_registry.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-26T06:01:23,462 copying build/lib/nnunetv2/imageio/nibabel_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-26T06:01:23,465 copying build/lib/nnunetv2/imageio/simpleitk_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-26T06:01:23,467 copying build/lib/nnunetv2/imageio/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-26T06:01:23,469 copying build/lib/nnunetv2/imageio/base_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-26T06:01:23,471 copying build/lib/nnunetv2/imageio/natural_image_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2024-04-26T06:01:23,474 creating build/bdist.linux-armv7l/wheel/nnunetv2/ensembling 2024-04-26T06:01:23,475 copying build/lib/nnunetv2/ensembling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling 2024-04-26T06:01:23,477 copying build/lib/nnunetv2/ensembling/ensemble.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling 2024-04-26T06:01:23,481 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-04-26T06:01:23,483 copying build/lib/nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-04-26T06:01:23,486 copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-04-26T06:01:23,489 copying build/lib/nnunetv2/batch_running/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-04-26T06:01:23,492 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2024-04-26T06:01:23,492 copying build/lib/nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2024-04-26T06:01:23,495 copying build/lib/nnunetv2/batch_running/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2024-04-26T06:01:23,496 copying build/lib/nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2024-04-26T06:01:23,498 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings 2024-04-26T06:01:23,499 copying build/lib/nnunetv2/batch_running/release_trainings/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings 2024-04-26T06:01:23,501 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-26T06:01:23,502 copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-26T06:01:23,505 copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-26T06:01:23,507 copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2024-04-26T06:01:23,509 copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2024-04-26T06:01:23,512 running install_egg_info 2024-04-26T06:01:23,517 Copying nnunetv2.egg-info to build/bdist.linux-armv7l/wheel/nnunetv2-2.4.2-py3.11.egg-info 2024-04-26T06:01:23,530 running install_scripts 2024-04-26T06:01:23,555 creating build/bdist.linux-armv7l/wheel/nnunetv2-2.4.2.dist-info/WHEEL 2024-04-26T06:01:23,558 creating '/tmp/pip-wheel-zxwzau6p/.tmp-2q9pbq8h/nnunetv2-2.4.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-26T06:01:23,561 adding 'nnunetv2/__init__.py' 2024-04-26T06:01:23,562 adding 'nnunetv2/configuration.py' 2024-04-26T06:01:23,564 adding 'nnunetv2/paths.py' 2024-04-26T06:01:23,566 adding 'nnunetv2/batch_running/__init__.py' 2024-04-26T06:01:23,567 adding 'nnunetv2/batch_running/collect_results_custom_Decathlon.py' 2024-04-26T06:01:23,569 adding 'nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py' 2024-04-26T06:01:23,570 adding 'nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py' 2024-04-26T06:01:23,572 adding 'nnunetv2/batch_running/benchmarking/__init__.py' 2024-04-26T06:01:23,573 adding 'nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py' 2024-04-26T06:01:23,574 adding 'nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py' 2024-04-26T06:01:23,576 adding 'nnunetv2/batch_running/release_trainings/__init__.py' 2024-04-26T06:01:23,578 adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py' 2024-04-26T06:01:23,579 adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py' 2024-04-26T06:01:23,581 adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py' 2024-04-26T06:01:23,583 adding 'nnunetv2/dataset_conversion/Dataset027_ACDC.py' 2024-04-26T06:01:23,584 adding 'nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py' 2024-04-26T06:01:23,586 adding 'nnunetv2/dataset_conversion/Dataset114_MNMs.py' 2024-04-26T06:01:23,587 adding 'nnunetv2/dataset_conversion/Dataset115_EMIDEC.py' 2024-04-26T06:01:23,589 adding 'nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py' 2024-04-26T06:01:23,590 adding 'nnunetv2/dataset_conversion/Dataset137_BraTS21.py' 2024-04-26T06:01:23,592 adding 'nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py' 2024-04-26T06:01:23,593 adding 'nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py' 2024-04-26T06:01:23,595 adding 'nnunetv2/dataset_conversion/Dataset220_KiTS2023.py' 2024-04-26T06:01:23,596 adding 'nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py' 2024-04-26T06:01:23,597 adding 'nnunetv2/dataset_conversion/Dataset223_AMOS2022postChallenge.py' 2024-04-26T06:01:23,599 adding 'nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py' 2024-04-26T06:01:23,600 adding 'nnunetv2/dataset_conversion/__init__.py' 2024-04-26T06:01:23,601 adding 'nnunetv2/dataset_conversion/convert_MSD_dataset.py' 2024-04-26T06:01:23,603 adding 'nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py' 2024-04-26T06:01:23,604 adding 'nnunetv2/dataset_conversion/generate_dataset_json.py' 2024-04-26T06:01:23,606 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py' 2024-04-26T06:01:23,607 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py' 2024-04-26T06:01:23,609 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py' 2024-04-26T06:01:23,610 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py' 2024-04-26T06:01:23,611 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py' 2024-04-26T06:01:23,613 adding 'nnunetv2/ensembling/__init__.py' 2024-04-26T06:01:23,614 adding 'nnunetv2/ensembling/ensemble.py' 2024-04-26T06:01:23,616 adding 'nnunetv2/evaluation/__init__.py' 2024-04-26T06:01:23,618 adding 'nnunetv2/evaluation/accumulate_cv_results.py' 2024-04-26T06:01:23,619 adding 'nnunetv2/evaluation/evaluate_predictions.py' 2024-04-26T06:01:23,622 adding 'nnunetv2/evaluation/find_best_configuration.py' 2024-04-26T06:01:23,624 adding 'nnunetv2/experiment_planning/__init__.py' 2024-04-26T06:01:23,625 adding 'nnunetv2/experiment_planning/plan_and_preprocess_api.py' 2024-04-26T06:01:23,627 adding 'nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py' 2024-04-26T06:01:23,630 adding 'nnunetv2/experiment_planning/verify_dataset_integrity.py' 2024-04-26T06:01:23,631 adding 'nnunetv2/experiment_planning/dataset_fingerprint/__init__.py' 2024-04-26T06:01:23,633 adding 'nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py' 2024-04-26T06:01:23,635 adding 'nnunetv2/experiment_planning/experiment_planners/__init__.py' 2024-04-26T06:01:23,638 adding 'nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py' 2024-04-26T06:01:23,640 adding 'nnunetv2/experiment_planning/experiment_planners/network_topology.py' 2024-04-26T06:01:23,642 adding 'nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py' 2024-04-26T06:01:23,643 adding 'nnunetv2/experiment_planning/experiment_planners/residual_unets/__init__.py' 2024-04-26T06:01:23,645 adding 'nnunetv2/experiment_planning/experiment_planners/residual_unets/residual_encoder_unet_planners.py' 2024-04-26T06:01:23,647 adding 'nnunetv2/experiment_planning/plans_for_pretraining/__init__.py' 2024-04-26T06:01:23,648 adding 'nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py' 2024-04-26T06:01:23,650 adding 'nnunetv2/imageio/__init__.py' 2024-04-26T06:01:23,651 adding 'nnunetv2/imageio/base_reader_writer.py' 2024-04-26T06:01:23,653 adding 'nnunetv2/imageio/natural_image_reader_writer.py' 2024-04-26T06:01:23,654 adding 'nnunetv2/imageio/nibabel_reader_writer.py' 2024-04-26T06:01:23,655 adding 'nnunetv2/imageio/reader_writer_registry.py' 2024-04-26T06:01:23,657 adding 'nnunetv2/imageio/simpleitk_reader_writer.py' 2024-04-26T06:01:23,658 adding 'nnunetv2/imageio/tif_reader_writer.py' 2024-04-26T06:01:23,660 adding 'nnunetv2/inference/__init__.py' 2024-04-26T06:01:23,662 adding 'nnunetv2/inference/data_iterators.py' 2024-04-26T06:01:23,663 adding 'nnunetv2/inference/examples.py' 2024-04-26T06:01:23,665 adding 'nnunetv2/inference/export_prediction.py' 2024-04-26T06:01:23,670 adding 'nnunetv2/inference/predict_from_raw_data.py' 2024-04-26T06:01:23,672 adding 'nnunetv2/inference/sliding_window_prediction.py' 2024-04-26T06:01:23,674 adding 'nnunetv2/model_sharing/__init__.py' 2024-04-26T06:01:23,675 adding 'nnunetv2/model_sharing/entry_points.py' 2024-04-26T06:01:23,677 adding 'nnunetv2/model_sharing/model_download.py' 2024-04-26T06:01:23,678 adding 'nnunetv2/model_sharing/model_export.py' 2024-04-26T06:01:23,679 adding 'nnunetv2/model_sharing/model_import.py' 2024-04-26T06:01:23,681 adding 'nnunetv2/postprocessing/__init__.py' 2024-04-26T06:01:23,683 adding 'nnunetv2/postprocessing/remove_connected_components.py' 2024-04-26T06:01:23,685 adding 'nnunetv2/preprocessing/__init__.py' 2024-04-26T06:01:23,686 adding 'nnunetv2/preprocessing/cropping/__init__.py' 2024-04-26T06:01:23,688 adding 'nnunetv2/preprocessing/cropping/cropping.py' 2024-04-26T06:01:23,689 adding 'nnunetv2/preprocessing/normalization/__init__.py' 2024-04-26T06:01:23,691 adding 'nnunetv2/preprocessing/normalization/default_normalization_schemes.py' 2024-04-26T06:01:23,692 adding 'nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py' 2024-04-26T06:01:23,693 adding 'nnunetv2/preprocessing/preprocessors/__init__.py' 2024-04-26T06:01:23,696 adding 'nnunetv2/preprocessing/preprocessors/default_preprocessor.py' 2024-04-26T06:01:23,698 adding 'nnunetv2/preprocessing/resampling/__init__.py' 2024-04-26T06:01:23,699 adding 'nnunetv2/preprocessing/resampling/default_resampling.py' 2024-04-26T06:01:23,701 adding 'nnunetv2/preprocessing/resampling/utils.py' 2024-04-26T06:01:23,702 adding 'nnunetv2/run/__init__.py' 2024-04-26T06:01:23,704 adding 'nnunetv2/run/load_pretrained_weights.py' 2024-04-26T06:01:23,706 adding 'nnunetv2/run/run_training.py' 2024-04-26T06:01:23,707 adding 'nnunetv2/tests/__init__.py' 2024-04-26T06:01:23,709 adding 'nnunetv2/tests/integration_tests/__init__.py' 2024-04-26T06:01:23,710 adding 'nnunetv2/tests/integration_tests/add_lowres_and_cascade.py' 2024-04-26T06:01:23,711 adding 'nnunetv2/tests/integration_tests/cleanup_integration_test.py' 2024-04-26T06:01:23,713 adding 'nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py' 2024-04-26T06:01:23,714 adding 'nnunetv2/training/__init__.py' 2024-04-26T06:01:23,716 adding 'nnunetv2/training/data_augmentation/__init__.py' 2024-04-26T06:01:23,717 adding 'nnunetv2/training/data_augmentation/compute_initial_patch_size.py' 2024-04-26T06:01:23,718 adding 'nnunetv2/training/data_augmentation/custom_transforms/__init__.py' 2024-04-26T06:01:23,720 adding 'nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py' 2024-04-26T06:01:23,721 adding 'nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py' 2024-04-26T06:01:23,722 adding 'nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py' 2024-04-26T06:01:23,724 adding 'nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py' 2024-04-26T06:01:23,725 adding 'nnunetv2/training/data_augmentation/custom_transforms/masking.py' 2024-04-26T06:01:23,726 adding 'nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py' 2024-04-26T06:01:23,727 adding 'nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py' 2024-04-26T06:01:23,729 adding 'nnunetv2/training/dataloading/__init__.py' 2024-04-26T06:01:23,731 adding 'nnunetv2/training/dataloading/base_data_loader.py' 2024-04-26T06:01:23,732 adding 'nnunetv2/training/dataloading/data_loader_2d.py' 2024-04-26T06:01:23,734 adding 'nnunetv2/training/dataloading/data_loader_3d.py' 2024-04-26T06:01:23,735 adding 'nnunetv2/training/dataloading/nnunet_dataset.py' 2024-04-26T06:01:23,737 adding 'nnunetv2/training/dataloading/utils.py' 2024-04-26T06:01:23,738 adding 'nnunetv2/training/logging/__init__.py' 2024-04-26T06:01:23,740 adding 'nnunetv2/training/logging/nnunet_logger.py' 2024-04-26T06:01:23,742 adding 'nnunetv2/training/loss/__init__.py' 2024-04-26T06:01:23,743 adding 'nnunetv2/training/loss/compound_losses.py' 2024-04-26T06:01:23,744 adding 'nnunetv2/training/loss/deep_supervision.py' 2024-04-26T06:01:23,746 adding 'nnunetv2/training/loss/dice.py' 2024-04-26T06:01:23,747 adding 'nnunetv2/training/loss/robust_ce_loss.py' 2024-04-26T06:01:23,749 adding 'nnunetv2/training/lr_scheduler/__init__.py' 2024-04-26T06:01:23,750 adding 'nnunetv2/training/lr_scheduler/polylr.py' 2024-04-26T06:01:23,752 adding 'nnunetv2/training/nnUNetTrainer/__init__.py' 2024-04-26T06:01:23,759 adding 'nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py' 2024-04-26T06:01:23,761 adding 'nnunetv2/training/nnUNetTrainer/variants/__init__.py' 2024-04-26T06:01:23,763 adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py' 2024-04-26T06:01:23,765 adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py' 2024-04-26T06:01:23,766 adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py' 2024-04-26T06:01:23,768 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py' 2024-04-26T06:01:23,770 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py' 2024-04-26T06:01:23,772 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py' 2024-04-26T06:01:23,773 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py' 2024-04-26T06:01:23,774 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py' 2024-04-26T06:01:23,776 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py' 2024-04-26T06:01:23,777 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py' 2024-04-26T06:01:23,779 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py' 2024-04-26T06:01:23,780 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py' 2024-04-26T06:01:23,781 adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py' 2024-04-26T06:01:23,783 adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py' 2024-04-26T06:01:23,784 adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py' 2024-04-26T06:01:23,785 adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py' 2024-04-26T06:01:23,786 adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py' 2024-04-26T06:01:23,788 adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py' 2024-04-26T06:01:23,789 adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py' 2024-04-26T06:01:23,790 adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py' 2024-04-26T06:01:23,791 adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py' 2024-04-26T06:01:23,793 adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py' 2024-04-26T06:01:23,794 adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py' 2024-04-26T06:01:23,796 adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py' 2024-04-26T06:01:23,797 adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py' 2024-04-26T06:01:23,799 adding 'nnunetv2/utilities/__init__.py' 2024-04-26T06:01:23,800 adding 'nnunetv2/utilities/collate_outputs.py' 2024-04-26T06:01:23,801 adding 'nnunetv2/utilities/crossval_split.py' 2024-04-26T06:01:23,802 adding 'nnunetv2/utilities/dataset_name_id_conversion.py' 2024-04-26T06:01:23,804 adding 'nnunetv2/utilities/ddp_allgather.py' 2024-04-26T06:01:23,805 adding 'nnunetv2/utilities/default_n_proc_DA.py' 2024-04-26T06:01:23,806 adding 'nnunetv2/utilities/file_path_utilities.py' 2024-04-26T06:01:23,807 adding 'nnunetv2/utilities/find_class_by_name.py' 2024-04-26T06:01:23,809 adding 'nnunetv2/utilities/get_network_from_plans.py' 2024-04-26T06:01:23,810 adding 'nnunetv2/utilities/helpers.py' 2024-04-26T06:01:23,811 adding 'nnunetv2/utilities/json_export.py' 2024-04-26T06:01:23,813 adding 'nnunetv2/utilities/network_initialization.py' 2024-04-26T06:01:23,815 adding 'nnunetv2/utilities/overlay_plots.py' 2024-04-26T06:01:23,816 adding 'nnunetv2/utilities/utils.py' 2024-04-26T06:01:23,818 adding 'nnunetv2/utilities/label_handling/__init__.py' 2024-04-26T06:01:23,820 adding 'nnunetv2/utilities/label_handling/label_handling.py' 2024-04-26T06:01:23,821 adding 'nnunetv2/utilities/plans_handling/__init__.py' 2024-04-26T06:01:23,823 adding 'nnunetv2/utilities/plans_handling/plans_handler.py' 2024-04-26T06:01:23,826 adding 'nnunetv2-2.4.2.dist-info/LICENSE' 2024-04-26T06:01:23,830 adding 'nnunetv2-2.4.2.dist-info/METADATA' 2024-04-26T06:01:23,831 adding 'nnunetv2-2.4.2.dist-info/WHEEL' 2024-04-26T06:01:23,832 adding 'nnunetv2-2.4.2.dist-info/entry_points.txt' 2024-04-26T06:01:23,833 adding 'nnunetv2-2.4.2.dist-info/top_level.txt' 2024-04-26T06:01:23,836 adding 'nnunetv2-2.4.2.dist-info/RECORD' 2024-04-26T06:01:23,842 removing build/bdist.linux-armv7l/wheel 2024-04-26T06:01:24,233 Building wheel for nnunetv2 (pyproject.toml): finished with status 'done' 2024-04-26T06:01:24,242 Created wheel for nnunetv2: filename=nnunetv2-2.4.2-py3-none-any.whl size=248755 sha256=d4fcf8f02b12a60ac375b82706c929d2d10fb50f1d6cd5f2580e028a16380af3 2024-04-26T06:01:24,243 Stored in directory: /tmp/pip-ephem-wheel-cache-9roo0s6x/wheels/e7/66/6b/1bf1987be6ded9b482c60a77ac00bc72d49b2170b6385b746d 2024-04-26T06:01:24,267 Successfully built nnunetv2 2024-04-26T06:01:24,278 Removed build tracker: '/tmp/pip-build-tracker-fniuim_y'