2024-04-26T06:58:56,693 Created temporary directory: /tmp/pip-build-tracker-gcznqm6y 2024-04-26T06:58:56,694 Initialized build tracking at /tmp/pip-build-tracker-gcznqm6y 2024-04-26T06:58:56,694 Created build tracker: /tmp/pip-build-tracker-gcznqm6y 2024-04-26T06:58:56,695 Entered build tracker: /tmp/pip-build-tracker-gcznqm6y 2024-04-26T06:58:56,696 Created temporary directory: /tmp/pip-wheel-ylal8suf 2024-04-26T06:58:56,699 Created temporary directory: /tmp/pip-ephem-wheel-cache-2xp0eeie 2024-04-26T06:58:56,720 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-26T06:58:56,724 2 location(s) to search for versions of scarcc: 2024-04-26T06:58:56,724 * https://pypi.org/simple/scarcc/ 2024-04-26T06:58:56,724 * https://www.piwheels.org/simple/scarcc/ 2024-04-26T06:58:56,724 Fetching project page and analyzing links: https://pypi.org/simple/scarcc/ 2024-04-26T06:58:56,725 Getting page https://pypi.org/simple/scarcc/ 2024-04-26T06:58:56,727 Found index url https://pypi.org/simple/ 2024-04-26T06:58:56,942 Fetched page https://pypi.org/simple/scarcc/ as application/vnd.pypi.simple.v1+json 2024-04-26T06:58:56,947 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/32/66/7f973d1f25516334d34d62aea227070b5fc80b184d6dca40a27ef12e64e3/scarcc-0.0.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-04-26T06:58:56,948 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/2a/89/3e900dfde939e2f3ffa4da4b615295e289c2377d0e0a536b738dbac61847/scarcc-0.0.10-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-04-26T06:58:56,948 Found link https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz (from https://pypi.org/simple/scarcc/), version: 0.0.10 2024-04-26T06:58:56,949 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/c0/32/4840ce6210355020327ee5eda21165a56282d46369e6b1d6d5d8fe537e21/scarcc-0.0.21-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,950 Found link https://files.pythonhosted.org/packages/e0/1d/ddc312f4a66b9a25d346bcab3407258d8fcb07352709ba18827310ad313c/scarcc-0.0.21.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.21 2024-04-26T06:58:56,951 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/9a/e9/6cab4cf589c899c5362e4d18fc1478fce38a123f0af558f8eea5d6b13182/scarcc-0.0.23-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,952 Found link https://files.pythonhosted.org/packages/01/78/0316b97f9db104b44c8c35cc65d526b3a3b22cff44623afeaa7527f1a629/scarcc-0.0.23.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.23 2024-04-26T06:58:56,952 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/3e/71/bca2eab03bc095f1e748d8ad53064453be750c689627ec90e4ae85f60c28/scarcc-0.1.0-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,953 Found link https://files.pythonhosted.org/packages/68/af/324fb934fc7c3238bb792127ab053302fb598faee694823de0b98d319cb3/scarcc-0.1.0.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.0 2024-04-26T06:58:56,954 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/75/6b/711a0973554042f8eab900c92381eba54d1b5d869140a32887d25d8986e9/scarcc-0.1.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,955 Found link https://files.pythonhosted.org/packages/3a/55/e779f80b5835414a3f105214bbd492e88793626073b4977910b6b8d49fe2/scarcc-0.1.1.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.1 2024-04-26T06:58:56,955 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/28/69/e00f174ae9649ccda95c44ef7d68190bfb4d806757682cd0ed448b86fc58/scarcc-0.1.2-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,956 Found link https://files.pythonhosted.org/packages/76/84/2a4b3ac554eda645b5111173da060934263c1d51dfa1bbd6bc3efbda9369/scarcc-0.1.2.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.2 2024-04-26T06:58:56,957 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/20/e1/4040d4340571bfda4c1684de44829cd2b4d9acf65640fd8e94dea7485bd1/scarcc-0.1.3-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,958 Found link https://files.pythonhosted.org/packages/9a/78/141870d1bcd1cd046317dc41694998829d67edc7f2c9f6766c806d84a75e/scarcc-0.1.3.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.3 2024-04-26T06:58:56,959 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/29/43/0630b13a05b3c1acacca561eb6936abc078a8b74801dc6fc3d3deddfdbe9/scarcc-0.1.4-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,960 Found link https://files.pythonhosted.org/packages/03/c7/17a46f539e98f3fb821d40264f161f8a6fe8141cbe7e281ece19adcbf843/scarcc-0.1.4.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.4 2024-04-26T06:58:56,960 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/f3/58/1a8660eef797f1207e6afbd401bc9bf87e382f2ab7944ad1c8a4cfe8004e/scarcc-0.1.5-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,961 Found link https://files.pythonhosted.org/packages/2d/0e/416bb45c9e0f28ee2e58ab634e4fb66d3fb571ea74d5d0ce539f914f1525/scarcc-0.1.5.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.5 2024-04-26T06:58:56,962 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/2d/c7/6ce183543306ec89af5950062a8d2cc76020936a02e73ba45f92a7723b2a/scarcc-0.1.6-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,962 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/13/c1/91ec02bda71738eb8b27d97907bf479992a5fca2ba0c087b29eedd74d371/scarcc-0.1.7-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,963 Found link https://files.pythonhosted.org/packages/cb/ec/b22637ece98a09f869d94f8c33e13f37d6536095e7bc2f184b062ddcc9b1/scarcc-0.1.7.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.7 2024-04-26T06:58:56,964 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/49/49/a0a2b4f018e62d9470448f845ff914460a77acb5eb44b2639beb52dc6686/scarcc-0.1.8-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,964 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/72/5a/d7ff1ccf199c692ad07295c54b50bedf17f12973104c2b758756a10c2313/scarcc-0.1.9-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,965 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/68/f1/7b4e79abc473f997c5ffbafa3f94d6a2acacb83bd90a7f6020e9afdfdbe2/scarcc-0.1.10-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:56,965 Fetching project page and analyzing links: https://www.piwheels.org/simple/scarcc/ 2024-04-26T06:58:56,966 Getting page https://www.piwheels.org/simple/scarcc/ 2024-04-26T06:58:56,967 Found index url https://www.piwheels.org/simple/ 2024-04-26T06:58:57,133 Fetched page https://www.piwheels.org/simple/scarcc/ as text/html 2024-04-26T06:58:57,136 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.4-py3-none-any.whl#sha256=91b15492bde78fb08ee819c8cb237801aa6f8b074a722610d3c83722a4bcb0b3 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:57,137 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.3-py3-none-any.whl#sha256=b903747d0529e1a6a14bf17b79a839c1e515a4e550ac462f1041e98516686c1d (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:57,138 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.2-py3-none-any.whl#sha256=a465928c10fba6025f08f5eeb9d6d01113e5ce57f6ee6f2b96ab57315293fef3 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:57,138 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.1-py3-none-any.whl#sha256=49bc30639987874b31a8133c4976179ca76d46070620c5e00fb2c342f83a5164 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:57,138 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.0-py3-none-any.whl#sha256=de9f345b75c2ff3a756e8e5ec80ad3d7389d2da95004706231b4a8f3c94b7228 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:57,139 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.23-py3-none-any.whl#sha256=ec7ecb8295fee00c9793b736528d5721a671763fc5e6c9eb346cff07a8d90e48 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:57,139 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.21-py3-none-any.whl#sha256=60324a3750ab0872a4899af7e1d1d7473e5afbf73bc24e32d4813a7173237c5f (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-04-26T06:58:57,140 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.10-py3-none-any.whl#sha256=0b4afea4ec53795f21e57430c1f7f849ded79621b716982836453a570fda8d29 (from https://www.piwheels.org/simple/scarcc/) 2024-04-26T06:58:57,141 Skipping link: not a file: https://www.piwheels.org/simple/scarcc/ 2024-04-26T06:58:57,141 Skipping link: not a file: https://pypi.org/simple/scarcc/ 2024-04-26T06:58:57,160 Given no hashes to check 1 links for project 'scarcc': discarding no candidates 2024-04-26T06:58:57,178 Collecting scarcc==0.1.5 2024-04-26T06:58:57,180 Created temporary directory: /tmp/pip-unpack-2n7u2ej_ 2024-04-26T06:58:57,392 Downloading scarcc-0.1.5.tar.gz (52 kB) 2024-04-26T06:58:57,576 Added scarcc==0.1.5 from https://files.pythonhosted.org/packages/2d/0e/416bb45c9e0f28ee2e58ab634e4fb66d3fb571ea74d5d0ce539f914f1525/scarcc-0.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-gcznqm6y' 2024-04-26T06:58:57,581 Created temporary directory: /tmp/pip-build-env-f8fqqw6n 2024-04-26T06:58:57,586 Installing build dependencies: started 2024-04-26T06:58:57,587 Running command pip subprocess to install build dependencies 2024-04-26T06:58:58,720 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-26T06:58:59,216 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-26T06:59:00,720 Collecting setuptools>=40.6.0 2024-04-26T06:59:00,734 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-04-26T06:59:00,962 Collecting wheel 2024-04-26T06:59:00,976 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-26T06:59:03,588 Installing collected packages: wheel, setuptools 2024-04-26T06:59:03,816 Creating /tmp/pip-build-env-f8fqqw6n/overlay/local/bin 2024-04-26T06:59:03,819 changing mode of /tmp/pip-build-env-f8fqqw6n/overlay/local/bin/wheel to 755 2024-04-26T06:59:06,234 Successfully installed setuptools-69.5.1 wheel-0.43.0 2024-04-26T06:59:06,748 Installing build dependencies: finished with status 'done' 2024-04-26T06:59:06,751 Getting requirements to build wheel: started 2024-04-26T06:59:06,752 Running command Getting requirements to build wheel 2024-04-26T06:59:07,355 running egg_info 2024-04-26T06:59:07,359 writing src/scarcc.egg-info/PKG-INFO 2024-04-26T06:59:07,363 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-04-26T06:59:07,365 writing requirements to src/scarcc.egg-info/requires.txt 2024-04-26T06:59:07,366 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-04-26T06:59:07,399 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-04-26T06:59:07,402 adding license file 'LICENSE' 2024-04-26T06:59:07,406 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-04-26T06:59:07,491 Getting requirements to build wheel: finished with status 'done' 2024-04-26T06:59:07,500 Created temporary directory: /tmp/pip-modern-metadata-kz2tco8l 2024-04-26T06:59:07,503 Preparing metadata (pyproject.toml): started 2024-04-26T06:59:07,504 Running command Preparing metadata (pyproject.toml) 2024-04-26T06:59:08,040 running dist_info 2024-04-26T06:59:08,045 creating /tmp/pip-modern-metadata-kz2tco8l/scarcc.egg-info 2024-04-26T06:59:08,049 writing /tmp/pip-modern-metadata-kz2tco8l/scarcc.egg-info/PKG-INFO 2024-04-26T06:59:08,053 writing dependency_links to /tmp/pip-modern-metadata-kz2tco8l/scarcc.egg-info/dependency_links.txt 2024-04-26T06:59:08,055 writing requirements to /tmp/pip-modern-metadata-kz2tco8l/scarcc.egg-info/requires.txt 2024-04-26T06:59:08,056 writing top-level names to /tmp/pip-modern-metadata-kz2tco8l/scarcc.egg-info/top_level.txt 2024-04-26T06:59:08,058 writing manifest file '/tmp/pip-modern-metadata-kz2tco8l/scarcc.egg-info/SOURCES.txt' 2024-04-26T06:59:08,086 reading manifest file '/tmp/pip-modern-metadata-kz2tco8l/scarcc.egg-info/SOURCES.txt' 2024-04-26T06:59:08,088 adding license file 'LICENSE' 2024-04-26T06:59:08,091 writing manifest file '/tmp/pip-modern-metadata-kz2tco8l/scarcc.egg-info/SOURCES.txt' 2024-04-26T06:59:08,092 creating '/tmp/pip-modern-metadata-kz2tco8l/scarcc-0.1.5.dist-info' 2024-04-26T06:59:08,265 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-26T06:59:08,269 Source in /tmp/pip-wheel-ylal8suf/scarcc_1f26e929553e4751abcd291232dd5996 has version 0.1.5, which satisfies requirement scarcc==0.1.5 from https://files.pythonhosted.org/packages/2d/0e/416bb45c9e0f28ee2e58ab634e4fb66d3fb571ea74d5d0ce539f914f1525/scarcc-0.1.5.tar.gz 2024-04-26T06:59:08,270 Removed scarcc==0.1.5 from https://files.pythonhosted.org/packages/2d/0e/416bb45c9e0f28ee2e58ab634e4fb66d3fb571ea74d5d0ce539f914f1525/scarcc-0.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-gcznqm6y' 2024-04-26T06:59:08,275 Created temporary directory: /tmp/pip-unpack-_ukzoxyu 2024-04-26T06:59:08,276 Created temporary directory: /tmp/pip-unpack-hiek_bod 2024-04-26T06:59:08,290 Building wheels for collected packages: scarcc 2024-04-26T06:59:08,295 Created temporary directory: /tmp/pip-wheel-cymo_nsg 2024-04-26T06:59:08,296 Destination directory: /tmp/pip-wheel-cymo_nsg 2024-04-26T06:59:08,299 Building wheel for scarcc (pyproject.toml): started 2024-04-26T06:59:08,300 Running command Building wheel for scarcc (pyproject.toml) 2024-04-26T06:59:08,873 running bdist_wheel 2024-04-26T06:59:08,915 running build 2024-04-26T06:59:08,916 running build_py 2024-04-26T06:59:08,923 creating build 2024-04-26T06:59:08,923 creating build/lib 2024-04-26T06:59:08,925 creating build/lib/scarcc 2024-04-26T06:59:08,926 copying src/scarcc/__init__.py -> build/lib/scarcc 2024-04-26T06:59:08,929 creating build/lib/scarcc/utils 2024-04-26T06:59:08,930 copying src/scarcc/utils/util.py -> build/lib/scarcc/utils 2024-04-26T06:59:08,932 copying src/scarcc/utils/__init__.py -> build/lib/scarcc/utils 2024-04-26T06:59:08,934 creating build/lib/scarcc/sim_engine 2024-04-26T06:59:08,935 copying src/scarcc/sim_engine/simulation_configuration.py -> build/lib/scarcc/sim_engine 2024-04-26T06:59:08,938 copying src/scarcc/sim_engine/output.py -> build/lib/scarcc/sim_engine 2024-04-26T06:59:08,942 copying src/scarcc/sim_engine/flux_extraction.py -> build/lib/scarcc/sim_engine 2024-04-26T06:59:08,946 copying src/scarcc/sim_engine/checkerboard_workflow.py -> build/lib/scarcc/sim_engine 2024-04-26T06:59:08,948 copying src/scarcc/sim_engine/__init__.py -> build/lib/scarcc/sim_engine 2024-04-26T06:59:08,949 copying src/scarcc/sim_engine/simulation_workflow.py -> build/lib/scarcc/sim_engine 2024-04-26T06:59:08,952 creating build/lib/scarcc/preparation 2024-04-26T06:59:08,953 copying src/scarcc/preparation/find_directory.py -> build/lib/scarcc/preparation 2024-04-26T06:59:08,955 copying src/scarcc/preparation/__init__.py -> build/lib/scarcc/preparation 2024-04-26T06:59:08,956 creating build/lib/scarcc/data_analysis 2024-04-26T06:59:08,957 copying src/scarcc/data_analysis/__init__.py -> build/lib/scarcc/data_analysis 2024-04-26T06:59:08,960 creating build/lib/scarcc/preparation/target_gene 2024-04-26T06:59:08,960 copying src/scarcc/preparation/target_gene/gene_format_handler.py -> build/lib/scarcc/preparation/target_gene 2024-04-26T06:59:08,963 copying src/scarcc/preparation/target_gene/__init__.py -> build/lib/scarcc/preparation/target_gene 2024-04-26T06:59:08,964 creating build/lib/scarcc/preparation/metabolic_model 2024-04-26T06:59:08,965 copying src/scarcc/preparation/metabolic_model/basic_model.py -> build/lib/scarcc/preparation/metabolic_model 2024-04-26T06:59:08,967 copying src/scarcc/preparation/metabolic_model/__init__.py -> build/lib/scarcc/preparation/metabolic_model 2024-04-26T06:59:08,969 creating build/lib/scarcc/preparation/perturbation 2024-04-26T06:59:08,970 copying src/scarcc/preparation/perturbation/__init__.py -> build/lib/scarcc/preparation/perturbation 2024-04-26T06:59:08,973 creating build/lib/scarcc/preparation/metabolic_model/core 2024-04-26T06:59:08,973 copying src/scarcc/preparation/metabolic_model/core/medium.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-04-26T06:59:08,975 copying src/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-04-26T06:59:08,977 copying src/scarcc/preparation/metabolic_model/core/component.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-04-26T06:59:08,980 copying src/scarcc/preparation/metabolic_model/core/__init__.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-04-26T06:59:08,983 creating build/lib/scarcc/preparation/perturbation/function 2024-04-26T06:59:08,985 copying src/scarcc/preparation/perturbation/function/iter_species.py -> build/lib/scarcc/preparation/perturbation/function 2024-04-26T06:59:08,988 copying src/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/lib/scarcc/preparation/perturbation/function 2024-04-26T06:59:08,990 copying src/scarcc/preparation/perturbation/function/__init__.py -> build/lib/scarcc/preparation/perturbation/function 2024-04-26T06:59:08,993 creating build/lib/scarcc/preparation/perturbation/alpha_finder 2024-04-26T06:59:08,994 copying src/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-04-26T06:59:08,998 copying src/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-04-26T06:59:09,002 copying src/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-04-26T06:59:09,005 copying src/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-04-26T06:59:09,006 copying src/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-04-26T06:59:09,009 creating build/lib/scarcc/data_analysis/plot 2024-04-26T06:59:09,010 copying src/scarcc/data_analysis/plot/legend.py -> build/lib/scarcc/data_analysis/plot 2024-04-26T06:59:09,012 copying src/scarcc/data_analysis/plot/heatmap.py -> build/lib/scarcc/data_analysis/plot 2024-04-26T06:59:09,014 copying src/scarcc/data_analysis/plot/scatter.py -> build/lib/scarcc/data_analysis/plot 2024-04-26T06:59:09,016 copying src/scarcc/data_analysis/plot/__init__.py -> build/lib/scarcc/data_analysis/plot 2024-04-26T06:59:09,017 copying src/scarcc/data_analysis/plot/kde.py -> build/lib/scarcc/data_analysis/plot 2024-04-26T06:59:09,020 creating build/lib/scarcc/data_analysis/flux 2024-04-26T06:59:09,021 copying src/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/lib/scarcc/data_analysis/flux 2024-04-26T06:59:09,023 copying src/scarcc/data_analysis/flux/flux_correction.py -> build/lib/scarcc/data_analysis/flux 2024-04-26T06:59:09,025 copying src/scarcc/data_analysis/flux/carbon_allocation.py -> build/lib/scarcc/data_analysis/flux 2024-04-26T06:59:09,028 copying src/scarcc/data_analysis/flux/flux_snapshot.py -> build/lib/scarcc/data_analysis/flux 2024-04-26T06:59:09,031 copying src/scarcc/data_analysis/flux/__init__.py -> build/lib/scarcc/data_analysis/flux 2024-04-26T06:59:09,033 creating build/lib/scarcc/data_analysis/drug_combination_response 2024-04-26T06:59:09,034 copying src/scarcc/data_analysis/drug_combination_response/classification.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-04-26T06:59:09,036 copying src/scarcc/data_analysis/drug_combination_response/__init__.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-04-26T06:59:09,038 creating build/lib/scarcc/data_analysis/growth 2024-04-26T06:59:09,039 copying src/scarcc/data_analysis/growth/growth_rate.py -> build/lib/scarcc/data_analysis/growth 2024-04-26T06:59:09,041 copying src/scarcc/data_analysis/growth/growth_summary.py -> build/lib/scarcc/data_analysis/growth 2024-04-26T06:59:09,043 copying src/scarcc/data_analysis/growth/plot_growth_curve.py -> build/lib/scarcc/data_analysis/growth 2024-04-26T06:59:09,045 copying src/scarcc/data_analysis/growth/_pathway_summary.py -> build/lib/scarcc/data_analysis/growth 2024-04-26T06:59:09,047 copying src/scarcc/data_analysis/growth/__init__.py -> build/lib/scarcc/data_analysis/growth 2024-04-26T06:59:09,072 installing to build/bdist.linux-armv7l/wheel 2024-04-26T06:59:09,073 running install 2024-04-26T06:59:09,097 running install_lib 2024-04-26T06:59:09,103 creating build/bdist.linux-armv7l 2024-04-26T06:59:09,104 creating build/bdist.linux-armv7l/wheel 2024-04-26T06:59:09,106 creating build/bdist.linux-armv7l/wheel/scarcc 2024-04-26T06:59:09,108 creating build/bdist.linux-armv7l/wheel/scarcc/utils 2024-04-26T06:59:09,109 copying build/lib/scarcc/utils/util.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-04-26T06:59:09,111 copying build/lib/scarcc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-04-26T06:59:09,114 creating build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-04-26T06:59:09,115 copying build/lib/scarcc/sim_engine/simulation_configuration.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-04-26T06:59:09,118 copying build/lib/scarcc/sim_engine/output.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-04-26T06:59:09,120 copying build/lib/scarcc/sim_engine/flux_extraction.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-04-26T06:59:09,122 copying build/lib/scarcc/sim_engine/checkerboard_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-04-26T06:59:09,124 copying build/lib/scarcc/sim_engine/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-04-26T06:59:09,125 copying build/lib/scarcc/sim_engine/simulation_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-04-26T06:59:09,128 creating build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-04-26T06:59:09,130 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-04-26T06:59:09,131 copying build/lib/scarcc/preparation/target_gene/gene_format_handler.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-04-26T06:59:09,134 copying build/lib/scarcc/preparation/target_gene/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-04-26T06:59:09,135 copying build/lib/scarcc/preparation/find_directory.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-04-26T06:59:09,137 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-04-26T06:59:09,139 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-04-26T06:59:09,140 copying build/lib/scarcc/preparation/metabolic_model/core/medium.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-04-26T06:59:09,142 copying build/lib/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-04-26T06:59:09,144 copying build/lib/scarcc/preparation/metabolic_model/core/component.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-04-26T06:59:09,146 copying build/lib/scarcc/preparation/metabolic_model/core/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-04-26T06:59:09,147 copying build/lib/scarcc/preparation/metabolic_model/basic_model.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-04-26T06:59:09,150 copying build/lib/scarcc/preparation/metabolic_model/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-04-26T06:59:09,152 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-04-26T06:59:09,153 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-04-26T06:59:09,154 copying build/lib/scarcc/preparation/perturbation/function/iter_species.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-04-26T06:59:09,156 copying build/lib/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-04-26T06:59:09,158 copying build/lib/scarcc/preparation/perturbation/function/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-04-26T06:59:09,160 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-04-26T06:59:09,161 copying build/lib/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-04-26T06:59:09,164 copying build/lib/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-04-26T06:59:09,167 copying build/lib/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-04-26T06:59:09,171 copying build/lib/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-04-26T06:59:09,174 copying build/lib/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-04-26T06:59:09,179 copying build/lib/scarcc/preparation/perturbation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-04-26T06:59:09,183 copying build/lib/scarcc/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-04-26T06:59:09,185 copying build/lib/scarcc/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc 2024-04-26T06:59:09,187 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-04-26T06:59:09,189 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-04-26T06:59:09,190 copying build/lib/scarcc/data_analysis/plot/legend.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-04-26T06:59:09,194 copying build/lib/scarcc/data_analysis/plot/heatmap.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-04-26T06:59:09,196 copying build/lib/scarcc/data_analysis/plot/scatter.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-04-26T06:59:09,198 copying build/lib/scarcc/data_analysis/plot/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-04-26T06:59:09,199 copying build/lib/scarcc/data_analysis/plot/kde.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-04-26T06:59:09,201 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-04-26T06:59:09,202 copying build/lib/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-04-26T06:59:09,204 copying build/lib/scarcc/data_analysis/flux/flux_correction.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-04-26T06:59:09,206 copying build/lib/scarcc/data_analysis/flux/carbon_allocation.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-04-26T06:59:09,208 copying build/lib/scarcc/data_analysis/flux/flux_snapshot.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-04-26T06:59:09,210 copying build/lib/scarcc/data_analysis/flux/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-04-26T06:59:09,212 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-04-26T06:59:09,214 copying build/lib/scarcc/data_analysis/drug_combination_response/classification.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-04-26T06:59:09,216 copying build/lib/scarcc/data_analysis/drug_combination_response/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-04-26T06:59:09,218 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-04-26T06:59:09,219 copying build/lib/scarcc/data_analysis/growth/growth_rate.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-04-26T06:59:09,221 copying build/lib/scarcc/data_analysis/growth/growth_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-04-26T06:59:09,224 copying build/lib/scarcc/data_analysis/growth/plot_growth_curve.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-04-26T06:59:09,225 copying build/lib/scarcc/data_analysis/growth/_pathway_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-04-26T06:59:09,228 copying build/lib/scarcc/data_analysis/growth/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-04-26T06:59:09,229 copying build/lib/scarcc/data_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-04-26T06:59:09,231 running install_egg_info 2024-04-26T06:59:09,242 running egg_info 2024-04-26T06:59:09,245 writing src/scarcc.egg-info/PKG-INFO 2024-04-26T06:59:09,248 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-04-26T06:59:09,250 writing requirements to src/scarcc.egg-info/requires.txt 2024-04-26T06:59:09,251 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-04-26T06:59:09,269 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-04-26T06:59:09,272 adding license file 'LICENSE' 2024-04-26T06:59:09,276 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-04-26T06:59:09,278 Copying src/scarcc.egg-info to build/bdist.linux-armv7l/wheel/scarcc-0.1.5-py3.11.egg-info 2024-04-26T06:59:09,287 running install_scripts 2024-04-26T06:59:09,301 creating build/bdist.linux-armv7l/wheel/scarcc-0.1.5.dist-info/WHEEL 2024-04-26T06:59:09,304 creating '/tmp/pip-wheel-cymo_nsg/.tmp-51apkm4x/scarcc-0.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-26T06:59:09,307 adding 'scarcc/__init__.py' 2024-04-26T06:59:09,309 adding 'scarcc/data_analysis/__init__.py' 2024-04-26T06:59:09,310 adding 'scarcc/data_analysis/drug_combination_response/__init__.py' 2024-04-26T06:59:09,312 adding 'scarcc/data_analysis/drug_combination_response/classification.py' 2024-04-26T06:59:09,314 adding 'scarcc/data_analysis/flux/__init__.py' 2024-04-26T06:59:09,316 adding 'scarcc/data_analysis/flux/carbon_allocation.py' 2024-04-26T06:59:09,317 adding 'scarcc/data_analysis/flux/flux_correction.py' 2024-04-26T06:59:09,319 adding 'scarcc/data_analysis/flux/flux_ratio_analysis.py' 2024-04-26T06:59:09,321 adding 'scarcc/data_analysis/flux/flux_snapshot.py' 2024-04-26T06:59:09,323 adding 'scarcc/data_analysis/growth/__init__.py' 2024-04-26T06:59:09,324 adding 'scarcc/data_analysis/growth/_pathway_summary.py' 2024-04-26T06:59:09,326 adding 'scarcc/data_analysis/growth/growth_rate.py' 2024-04-26T06:59:09,328 adding 'scarcc/data_analysis/growth/growth_summary.py' 2024-04-26T06:59:09,329 adding 'scarcc/data_analysis/growth/plot_growth_curve.py' 2024-04-26T06:59:09,331 adding 'scarcc/data_analysis/plot/__init__.py' 2024-04-26T06:59:09,332 adding 'scarcc/data_analysis/plot/heatmap.py' 2024-04-26T06:59:09,333 adding 'scarcc/data_analysis/plot/kde.py' 2024-04-26T06:59:09,334 adding 'scarcc/data_analysis/plot/legend.py' 2024-04-26T06:59:09,335 adding 'scarcc/data_analysis/plot/scatter.py' 2024-04-26T06:59:09,337 adding 'scarcc/preparation/__init__.py' 2024-04-26T06:59:09,338 adding 'scarcc/preparation/find_directory.py' 2024-04-26T06:59:09,340 adding 'scarcc/preparation/metabolic_model/__init__.py' 2024-04-26T06:59:09,341 adding 'scarcc/preparation/metabolic_model/basic_model.py' 2024-04-26T06:59:09,343 adding 'scarcc/preparation/metabolic_model/core/__init__.py' 2024-04-26T06:59:09,344 adding 'scarcc/preparation/metabolic_model/core/component.py' 2024-04-26T06:59:09,346 adding 'scarcc/preparation/metabolic_model/core/flux_weighting.py' 2024-04-26T06:59:09,347 adding 'scarcc/preparation/metabolic_model/core/medium.py' 2024-04-26T06:59:09,348 adding 'scarcc/preparation/perturbation/__init__.py' 2024-04-26T06:59:09,350 adding 'scarcc/preparation/perturbation/alpha_finder/__init__.py' 2024-04-26T06:59:09,352 adding 'scarcc/preparation/perturbation/alpha_finder/alpha_finder.py' 2024-04-26T06:59:09,354 adding 'scarcc/preparation/perturbation/alpha_finder/checkerboard.py' 2024-04-26T06:59:09,356 adding 'scarcc/preparation/perturbation/alpha_finder/coculture.py' 2024-04-26T06:59:09,359 adding 'scarcc/preparation/perturbation/alpha_finder/monoculture.py' 2024-04-26T06:59:09,361 adding 'scarcc/preparation/perturbation/function/__init__.py' 2024-04-26T06:59:09,363 adding 'scarcc/preparation/perturbation/function/iter_species.py' 2024-04-26T06:59:09,364 adding 'scarcc/preparation/perturbation/function/stoichiometry_scaling.py' 2024-04-26T06:59:09,366 adding 'scarcc/preparation/target_gene/__init__.py' 2024-04-26T06:59:09,367 adding 'scarcc/preparation/target_gene/gene_format_handler.py' 2024-04-26T06:59:09,369 adding 'scarcc/sim_engine/__init__.py' 2024-04-26T06:59:09,370 adding 'scarcc/sim_engine/checkerboard_workflow.py' 2024-04-26T06:59:09,372 adding 'scarcc/sim_engine/flux_extraction.py' 2024-04-26T06:59:09,374 adding 'scarcc/sim_engine/output.py' 2024-04-26T06:59:09,376 adding 'scarcc/sim_engine/simulation_configuration.py' 2024-04-26T06:59:09,378 adding 'scarcc/sim_engine/simulation_workflow.py' 2024-04-26T06:59:09,379 adding 'scarcc/utils/__init__.py' 2024-04-26T06:59:09,381 adding 'scarcc/utils/util.py' 2024-04-26T06:59:09,383 adding 'scarcc-0.1.5.dist-info/LICENSE' 2024-04-26T06:59:09,384 adding 'scarcc-0.1.5.dist-info/METADATA' 2024-04-26T06:59:09,385 adding 'scarcc-0.1.5.dist-info/WHEEL' 2024-04-26T06:59:09,386 adding 'scarcc-0.1.5.dist-info/top_level.txt' 2024-04-26T06:59:09,387 adding 'scarcc-0.1.5.dist-info/RECORD' 2024-04-26T06:59:09,389 removing build/bdist.linux-armv7l/wheel 2024-04-26T06:59:09,503 Building wheel for scarcc (pyproject.toml): finished with status 'done' 2024-04-26T06:59:09,509 Created wheel for scarcc: filename=scarcc-0.1.5-py3-none-any.whl size=64080 sha256=49f716cd35040e38a7d61290afa3f4bcc20ef0d0e38ac524dd4a6d5ece4a0605 2024-04-26T06:59:09,510 Stored in directory: /tmp/pip-ephem-wheel-cache-2xp0eeie/wheels/36/46/0c/9466a45d7f68025e2ea8bec74ce533efb16eb699f1079f5244 2024-04-26T06:59:09,521 Successfully built scarcc 2024-04-26T06:59:09,526 Removed build tracker: '/tmp/pip-build-tracker-gcznqm6y'