2024-04-26T14:59:50,177 Created temporary directory: /tmp/pip-build-tracker-c5ng_9e6 2024-04-26T14:59:50,179 Initialized build tracking at /tmp/pip-build-tracker-c5ng_9e6 2024-04-26T14:59:50,179 Created build tracker: /tmp/pip-build-tracker-c5ng_9e6 2024-04-26T14:59:50,179 Entered build tracker: /tmp/pip-build-tracker-c5ng_9e6 2024-04-26T14:59:50,179 Created temporary directory: /tmp/pip-wheel-84vi45bc 2024-04-26T14:59:50,184 Created temporary directory: /tmp/pip-ephem-wheel-cache-mgm4zkin 2024-04-26T14:59:50,208 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-26T14:59:50,211 2 location(s) to search for versions of pybedtools: 2024-04-26T14:59:50,211 * https://pypi.org/simple/pybedtools/ 2024-04-26T14:59:50,211 * https://www.piwheels.org/simple/pybedtools/ 2024-04-26T14:59:50,212 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2024-04-26T14:59:50,212 Getting page https://pypi.org/simple/pybedtools/ 2024-04-26T14:59:50,214 Found index url https://pypi.org/simple/ 2024-04-26T14:59:50,342 Fetched page https://pypi.org/simple/pybedtools/ as application/vnd.pypi.simple.v1+json 2024-04-26T14:59:50,349 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2024-04-26T14:59:50,349 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2024-04-26T14:59:50,349 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2024-04-26T14:59:50,350 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5 2024-04-26T14:59:50,350 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2024-04-26T14:59:50,350 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2024-04-26T14:59:50,351 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6 2024-04-26T14:59:50,351 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2024-04-26T14:59:50,351 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2024-04-26T14:59:50,351 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2024-04-26T14:59:50,352 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2024-04-26T14:59:50,352 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2024-04-26T14:59:50,352 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2024-04-26T14:59:50,352 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2024-04-26T14:59:50,353 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2024-04-26T14:59:50,353 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2024-04-26T14:59:50,353 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2024-04-26T14:59:50,353 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2024-04-26T14:59:50,354 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2024-04-26T14:59:50,354 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2024-04-26T14:59:50,354 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2024-04-26T14:59:50,355 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2024-04-26T14:59:50,355 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2024-04-26T14:59:50,355 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2024-04-26T14:59:50,355 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2024-04-26T14:59:50,356 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2024-04-26T14:59:50,356 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2024-04-26T14:59:50,356 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2024-04-26T14:59:50,356 Found link https://files.pythonhosted.org/packages/58/e2/410bb188b47582e2fd2f7176173b7b7bf46e122bb17fb4422552f4a6c604/pybedtools-0.9.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.0 2024-04-26T14:59:50,357 Found link https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.1 2024-04-26T14:59:50,357 Found link https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.10.0 2024-04-26T14:59:50,357 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybedtools/ 2024-04-26T14:59:50,358 Getting page https://www.piwheels.org/simple/pybedtools/ 2024-04-26T14:59:50,359 Found index url https://www.piwheels.org/simple/ 2024-04-26T14:59:50,590 Fetched page https://www.piwheels.org/simple/pybedtools/ as text/html 2024-04-26T14:59:50,611 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.10.0-cp311-cp311-linux_armv6l.whl#sha256=8ed4e3acbf7d2c44cde5721146f73763438e5ddf8656a0826730d8cb6d6dfb25 (from https://www.piwheels.org/simple/pybedtools/) 2024-04-26T14:59:50,611 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.10.0-cp311-cp311-linux_armv7l.whl#sha256=8ed4e3acbf7d2c44cde5721146f73763438e5ddf8656a0826730d8cb6d6dfb25 (from https://www.piwheels.org/simple/pybedtools/) 2024-04-26T14:59:50,612 Skipping link: No binaries permitted for pybedtools: 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https://www.piwheels.org/simple/pybedtools/pybedtools-0.2.2.dev0-py3-none-any.whl#sha256=37efef7ea02a872e8d60cd34e5a36bd3e480eaccf7121bd8ac67647dd4550efc (from https://www.piwheels.org/simple/pybedtools/) 2024-04-26T14:59:50,625 Skipping link: not a file: https://www.piwheels.org/simple/pybedtools/ 2024-04-26T14:59:50,626 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2024-04-26T14:59:50,647 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2024-04-26T14:59:50,664 Collecting pybedtools==0.7.8 2024-04-26T14:59:50,666 Created temporary directory: /tmp/pip-unpack-a6s2lhk1 2024-04-26T14:59:50,822 Downloading pybedtools-0.7.8.tar.gz (14.5 MB) 2024-04-26T14:59:54,819 Added pybedtools==0.7.8 from https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz to build tracker '/tmp/pip-build-tracker-c5ng_9e6' 2024-04-26T14:59:54,821 Running setup.py (path:/tmp/pip-wheel-84vi45bc/pybedtools_1ab6d144fa134ea3b29d8c71c84d5e3b/setup.py) egg_info for package pybedtools 2024-04-26T14:59:54,821 Created temporary directory: /tmp/pip-pip-egg-info-basd3ye7 2024-04-26T14:59:54,822 Preparing metadata (setup.py): started 2024-04-26T14:59:54,823 Running command python setup.py egg_info 2024-04-26T14:59:55,363 /tmp/pip-wheel-84vi45bc/pybedtools_1ab6d144fa134ea3b29d8c71c84d5e3b/setup.py:25: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2024-04-26T14:59:55,364 import pkg_resources 2024-04-26T14:59:56,003 running egg_info 2024-04-26T14:59:56,005 creating /tmp/pip-pip-egg-info-basd3ye7/pybedtools.egg-info 2024-04-26T14:59:56,029 writing /tmp/pip-pip-egg-info-basd3ye7/pybedtools.egg-info/PKG-INFO 2024-04-26T14:59:56,033 writing dependency_links to /tmp/pip-pip-egg-info-basd3ye7/pybedtools.egg-info/dependency_links.txt 2024-04-26T14:59:56,035 writing requirements to /tmp/pip-pip-egg-info-basd3ye7/pybedtools.egg-info/requires.txt 2024-04-26T14:59:56,036 writing top-level names to /tmp/pip-pip-egg-info-basd3ye7/pybedtools.egg-info/top_level.txt 2024-04-26T14:59:56,038 writing manifest file '/tmp/pip-pip-egg-info-basd3ye7/pybedtools.egg-info/SOURCES.txt' 2024-04-26T14:59:56,140 reading manifest file '/tmp/pip-pip-egg-info-basd3ye7/pybedtools.egg-info/SOURCES.txt' 2024-04-26T14:59:56,142 reading manifest template 'MANIFEST.in' 2024-04-26T14:59:56,389 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-04-26T14:59:56,391 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-04-26T14:59:56,391 adding license file 'LICENSE.txt' 2024-04-26T14:59:56,406 writing manifest file '/tmp/pip-pip-egg-info-basd3ye7/pybedtools.egg-info/SOURCES.txt' 2024-04-26T14:59:56,506 Preparing metadata (setup.py): finished with status 'done' 2024-04-26T14:59:56,511 Source in /tmp/pip-wheel-84vi45bc/pybedtools_1ab6d144fa134ea3b29d8c71c84d5e3b has version 0.7.8, which satisfies requirement pybedtools==0.7.8 from https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz 2024-04-26T14:59:56,512 Removed pybedtools==0.7.8 from https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz from build tracker '/tmp/pip-build-tracker-c5ng_9e6' 2024-04-26T14:59:56,517 Created temporary directory: /tmp/pip-unpack-2drxrrhb 2024-04-26T14:59:56,518 Created temporary directory: /tmp/pip-unpack-vh53imvn 2024-04-26T14:59:56,522 Building wheels for collected packages: pybedtools 2024-04-26T14:59:56,526 Created temporary directory: /tmp/pip-wheel-8q4b815n 2024-04-26T14:59:56,526 Building wheel for pybedtools (setup.py): started 2024-04-26T14:59:56,527 Destination directory: /tmp/pip-wheel-8q4b815n 2024-04-26T14:59:56,527 Running command python setup.py bdist_wheel 2024-04-26T14:59:57,099 /tmp/pip-wheel-84vi45bc/pybedtools_1ab6d144fa134ea3b29d8c71c84d5e3b/setup.py:25: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2024-04-26T14:59:57,099 import pkg_resources 2024-04-26T14:59:57,709 running bdist_wheel 2024-04-26T14:59:57,737 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2024-04-26T14:59:57,764 running build 2024-04-26T14:59:57,765 running build_py 2024-04-26T14:59:57,791 creating build 2024-04-26T14:59:57,791 creating build/lib.linux-armv7l-cpython-39 2024-04-26T14:59:57,792 creating build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:57,794 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:57,798 copying pybedtools/stats.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:57,800 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:57,806 copying pybedtools/parallel.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:57,808 copying pybedtools/__main__.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:57,810 copying pybedtools/logger.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:57,811 copying pybedtools/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:57,813 copying pybedtools/settings.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:57,815 copying pybedtools/filenames.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:57,817 copying pybedtools/version.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:57,818 copying pybedtools/helpers.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:57,822 creating build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,823 copying pybedtools/test/a.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,825 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,827 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,830 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,833 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,836 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,839 copying pybedtools/test/test_scripts.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,843 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,845 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,849 copying pybedtools/test/test1.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,855 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,858 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2024-04-26T14:59:57,864 creating build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-26T14:59:57,865 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-26T14:59:57,869 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-26T14:59:57,874 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-26T14:59:57,879 copying pybedtools/contrib/classifier.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-26T14:59:57,885 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-26T14:59:57,891 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-26T14:59:58,107 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-26T14:59:58,109 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2024-04-26T14:59:58,112 creating build/lib.linux-armv7l-cpython-39/pybedtools/scripts 2024-04-26T14:59:58,113 copying pybedtools/scripts/venn_gchart.py -> build/lib.linux-armv7l-cpython-39/pybedtools/scripts 2024-04-26T14:59:58,115 copying pybedtools/scripts/py_ms_example.py -> build/lib.linux-armv7l-cpython-39/pybedtools/scripts 2024-04-26T14:59:58,117 copying pybedtools/scripts/venn_mpl.py -> build/lib.linux-armv7l-cpython-39/pybedtools/scripts 2024-04-26T14:59:58,119 copying pybedtools/scripts/peak_pie.py -> build/lib.linux-armv7l-cpython-39/pybedtools/scripts 2024-04-26T14:59:58,121 copying pybedtools/scripts/intersection_matrix.py -> build/lib.linux-armv7l-cpython-39/pybedtools/scripts 2024-04-26T14:59:58,123 copying pybedtools/scripts/intron_exon_reads.py -> build/lib.linux-armv7l-cpython-39/pybedtools/scripts 2024-04-26T14:59:58,125 copying pybedtools/scripts/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/scripts 2024-04-26T14:59:58,126 copying pybedtools/scripts/annotate.py -> build/lib.linux-armv7l-cpython-39/pybedtools/scripts 2024-04-26T14:59:58,129 creating build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,129 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,143 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,147 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,153 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,154 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,156 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,170 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,172 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,174 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,179 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,184 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,187 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,189 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,191 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,193 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,195 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,198 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,200 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,209 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,217 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,225 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,232 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,234 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,236 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,238 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,241 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,244 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,246 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,249 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,252 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,255 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,259 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,298 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,300 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,302 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,305 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,317 copying pybedtools/test/data/1000genomes-example.vcf.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,319 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,321 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,324 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,541 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,545 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,548 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,551 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,613 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,624 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,698 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,701 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,703 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,706 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,709 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,711 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,713 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,715 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,718 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,725 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,728 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,730 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,733 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,735 copying pybedtools/test/data/dm3 -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,737 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,740 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,745 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,747 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2024-04-26T14:59:58,750 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:58,752 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:58,756 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:58,759 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:58,762 copying pybedtools/featurefuncs.cxx -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:58,782 copying pybedtools/cbedtools.cxx -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:58,818 copying pybedtools/_Window.c -> build/lib.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:58,831 running build_ext 2024-04-26T14:59:58,841 building 'pybedtools.cbedtools' extension 2024-04-26T14:59:58,842 creating build/temp.linux-armv7l-cpython-39 2024-04-26T14:59:58,842 creating build/temp.linux-armv7l-cpython-39/pybedtools 2024-04-26T14:59:58,844 creating build/temp.linux-armv7l-cpython-39/src 2024-04-26T14:59:58,845 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.9 -c pybedtools/cbedtools.cxx -o build/temp.linux-armv7l-cpython-39/pybedtools/cbedtools.o 2024-04-26T15:00:01,106 pybedtools/cbedtools.cxx: In function ‘PyObject* PyInit_cbedtools()’: 2024-04-26T15:00:01,106 pybedtools/cbedtools.cxx:15158:47: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2024-04-26T15:00:01,106 15158 | __pyx_type_10pybedtools_9cbedtools_Interval.tp_print = 0; 2024-04-26T15:00:01,107 | ^~~~~~~~ 2024-04-26T15:00:01,107 pybedtools/cbedtools.cxx:15173:55: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2024-04-26T15:00:01,107 15173 | __pyx_type_10pybedtools_9cbedtools_IntervalIterator.tp_print = 0; 2024-04-26T15:00:01,108 | ^~~~~~~~ 2024-04-26T15:00:01,108 pybedtools/cbedtools.cxx:15177:51: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2024-04-26T15:00:01,108 15177 | __pyx_type_10pybedtools_9cbedtools_IntervalFile.tp_print = 0; 2024-04-26T15:00:01,108 | ^~~~~~~~ 2024-04-26T15:00:01,148 pybedtools/cbedtools.cxx: In function ‘PyObject* __Pyx_decode_c_bytes(const char*, Py_ssize_t, Py_ssize_t, Py_ssize_t, const char*, const char*, PyObject* (*)(const char*, Py_ssize_t, const char*))’: 2024-04-26T15:00:01,149 pybedtools/cbedtools.cxx:16155:45: warning: ‘PyObject* PyUnicode_FromUnicode(const Py_UNICODE*, Py_ssize_t)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,149 16155 | return PyUnicode_FromUnicode(NULL, 0); 2024-04-26T15:00:01,149 | ^ 2024-04-26T15:00:01,149 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2024-04-26T15:00:01,149 from /usr/include/python3.9/Python.h:97, 2024-04-26T15:00:01,150 from pybedtools/cbedtools.cxx:4: 2024-04-26T15:00:01,150 /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here 2024-04-26T15:00:01,150 551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode( 2024-04-26T15:00:01,150 | ^~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,151 pybedtools/cbedtools.cxx: In function ‘int __Pyx_ParseOptionalKeywords(PyObject*, PyObject***, PyObject*, PyObject**, Py_ssize_t, const char*)’: 2024-04-26T15:00:01,151 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,151 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2024-04-26T15:00:01,151 | ^ 2024-04-26T15:00:01,152 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2024-04-26T15:00:01,152 261 | PyUnicode_WSTR_LENGTH(op) : \ 2024-04-26T15:00:01,152 | ^~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,152 pybedtools/cbedtools.cxx:16225:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2024-04-26T15:00:01,152 16225 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2024-04-26T15:00:01,152 | ^~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,153 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2024-04-26T15:00:01,153 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2024-04-26T15:00:01,153 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,153 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,153 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2024-04-26T15:00:01,153 | ^ 2024-04-26T15:00:01,153 pybedtools/cbedtools.cxx:16225:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2024-04-26T15:00:01,154 16225 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2024-04-26T15:00:01,154 | ^~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,154 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2024-04-26T15:00:01,154 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2024-04-26T15:00:01,154 | ^~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,154 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,154 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2024-04-26T15:00:01,154 | ^ 2024-04-26T15:00:01,155 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2024-04-26T15:00:01,155 264 | PyUnicode_WSTR_LENGTH(op))) 2024-04-26T15:00:01,155 | ^~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,155 pybedtools/cbedtools.cxx:16225:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2024-04-26T15:00:01,155 16225 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2024-04-26T15:00:01,155 | ^~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,155 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2024-04-26T15:00:01,156 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2024-04-26T15:00:01,156 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,156 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,156 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2024-04-26T15:00:01,156 | ^ 2024-04-26T15:00:01,156 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2024-04-26T15:00:01,157 261 | PyUnicode_WSTR_LENGTH(op) : \ 2024-04-26T15:00:01,157 | ^~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,157 pybedtools/cbedtools.cxx:16225:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2024-04-26T15:00:01,157 16225 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2024-04-26T15:00:01,157 | ^~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,157 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2024-04-26T15:00:01,157 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2024-04-26T15:00:01,158 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,158 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,158 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2024-04-26T15:00:01,158 | ^ 2024-04-26T15:00:01,158 pybedtools/cbedtools.cxx:16225:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2024-04-26T15:00:01,158 16225 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2024-04-26T15:00:01,158 | ^~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,159 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2024-04-26T15:00:01,159 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2024-04-26T15:00:01,159 | ^~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,159 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,159 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2024-04-26T15:00:01,159 | ^ 2024-04-26T15:00:01,159 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2024-04-26T15:00:01,160 264 | PyUnicode_WSTR_LENGTH(op))) 2024-04-26T15:00:01,160 | ^~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,160 pybedtools/cbedtools.cxx:16225:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2024-04-26T15:00:01,160 16225 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2024-04-26T15:00:01,160 | ^~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,160 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2024-04-26T15:00:01,160 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2024-04-26T15:00:01,161 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,161 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,161 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2024-04-26T15:00:01,161 | ^ 2024-04-26T15:00:01,161 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2024-04-26T15:00:01,161 261 | PyUnicode_WSTR_LENGTH(op) : \ 2024-04-26T15:00:01,161 | ^~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,162 pybedtools/cbedtools.cxx:16241:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2024-04-26T15:00:01,162 16241 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2024-04-26T15:00:01,162 | ^~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,162 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2024-04-26T15:00:01,162 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2024-04-26T15:00:01,162 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,162 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,163 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2024-04-26T15:00:01,163 | ^ 2024-04-26T15:00:01,163 pybedtools/cbedtools.cxx:16241:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2024-04-26T15:00:01,163 16241 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2024-04-26T15:00:01,163 | ^~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,163 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2024-04-26T15:00:01,163 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2024-04-26T15:00:01,164 | ^~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,164 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,164 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2024-04-26T15:00:01,164 | ^ 2024-04-26T15:00:01,164 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2024-04-26T15:00:01,164 264 | PyUnicode_WSTR_LENGTH(op))) 2024-04-26T15:00:01,164 | ^~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,165 pybedtools/cbedtools.cxx:16241:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2024-04-26T15:00:01,165 16241 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2024-04-26T15:00:01,165 | ^~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,165 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2024-04-26T15:00:01,165 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2024-04-26T15:00:01,165 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,165 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,166 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2024-04-26T15:00:01,166 | ^ 2024-04-26T15:00:01,166 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2024-04-26T15:00:01,166 261 | PyUnicode_WSTR_LENGTH(op) : \ 2024-04-26T15:00:01,166 | ^~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,166 pybedtools/cbedtools.cxx:16241:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2024-04-26T15:00:01,166 16241 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2024-04-26T15:00:01,167 | ^~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,167 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2024-04-26T15:00:01,167 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2024-04-26T15:00:01,167 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,167 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,167 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2024-04-26T15:00:01,167 | ^ 2024-04-26T15:00:01,168 pybedtools/cbedtools.cxx:16241:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2024-04-26T15:00:01,168 16241 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2024-04-26T15:00:01,168 | ^~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,168 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2024-04-26T15:00:01,168 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2024-04-26T15:00:01,168 | ^~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,168 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,168 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2024-04-26T15:00:01,169 | ^ 2024-04-26T15:00:01,169 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2024-04-26T15:00:01,169 264 | PyUnicode_WSTR_LENGTH(op))) 2024-04-26T15:00:01,169 | ^~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,169 pybedtools/cbedtools.cxx:16241:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2024-04-26T15:00:01,169 16241 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2024-04-26T15:00:01,169 | ^~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,170 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2024-04-26T15:00:01,170 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2024-04-26T15:00:01,170 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,184 pybedtools/cbedtools.cxx: In function ‘void __Pyx_ExceptionSave(PyObject**, PyObject**, PyObject**)’: 2024-04-26T15:00:01,184 pybedtools/cbedtools.cxx:16779:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2024-04-26T15:00:01,184 16779 | *type = tstate->exc_type; 2024-04-26T15:00:01,184 | ^~~~~~~~ 2024-04-26T15:00:01,184 | curexc_type 2024-04-26T15:00:01,185 pybedtools/cbedtools.cxx:16780:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2024-04-26T15:00:01,185 16780 | *value = tstate->exc_value; 2024-04-26T15:00:01,185 | ^~~~~~~~~ 2024-04-26T15:00:01,185 | curexc_value 2024-04-26T15:00:01,185 pybedtools/cbedtools.cxx:16781:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2024-04-26T15:00:01,185 16781 | *tb = tstate->exc_traceback; 2024-04-26T15:00:01,185 | ^~~~~~~~~~~~~ 2024-04-26T15:00:01,186 | curexc_traceback 2024-04-26T15:00:01,186 pybedtools/cbedtools.cxx: In function ‘void __Pyx_ExceptionReset(PyObject*, PyObject*, PyObject*)’: 2024-04-26T15:00:01,186 pybedtools/cbedtools.cxx:16793:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2024-04-26T15:00:01,186 16793 | tmp_type = tstate->exc_type; 2024-04-26T15:00:01,186 | ^~~~~~~~ 2024-04-26T15:00:01,186 | curexc_type 2024-04-26T15:00:01,187 pybedtools/cbedtools.cxx:16794:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2024-04-26T15:00:01,187 16794 | tmp_value = tstate->exc_value; 2024-04-26T15:00:01,187 | ^~~~~~~~~ 2024-04-26T15:00:01,187 | curexc_value 2024-04-26T15:00:01,187 pybedtools/cbedtools.cxx:16795:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2024-04-26T15:00:01,187 16795 | tmp_tb = tstate->exc_traceback; 2024-04-26T15:00:01,187 | ^~~~~~~~~~~~~ 2024-04-26T15:00:01,188 | curexc_traceback 2024-04-26T15:00:01,188 pybedtools/cbedtools.cxx:16796:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2024-04-26T15:00:01,188 16796 | tstate->exc_type = type; 2024-04-26T15:00:01,188 | ^~~~~~~~ 2024-04-26T15:00:01,188 | curexc_type 2024-04-26T15:00:01,188 pybedtools/cbedtools.cxx:16797:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2024-04-26T15:00:01,188 16797 | tstate->exc_value = value; 2024-04-26T15:00:01,189 | ^~~~~~~~~ 2024-04-26T15:00:01,189 | curexc_value 2024-04-26T15:00:01,189 pybedtools/cbedtools.cxx:16798:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2024-04-26T15:00:01,189 16798 | tstate->exc_traceback = tb; 2024-04-26T15:00:01,189 | ^~~~~~~~~~~~~ 2024-04-26T15:00:01,189 | curexc_traceback 2024-04-26T15:00:01,205 pybedtools/cbedtools.cxx: In function ‘PyObject* __Pyx_CyFunction_Call(PyObject*, PyObject*, PyObject*)’: 2024-04-26T15:00:01,206 pybedtools/cbedtools.cxx:17319:39: warning: ‘PyObject* PyCFunction_Call(PyObject*, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,206 17319 | return PyCFunction_Call(func, arg, kw); 2024-04-26T15:00:01,206 | ^ 2024-04-26T15:00:01,206 In file included from /usr/include/python3.9/Python.h:111, 2024-04-26T15:00:01,206 from pybedtools/cbedtools.cxx:4: 2024-04-26T15:00:01,206 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2024-04-26T15:00:01,207 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2024-04-26T15:00:01,207 | ^~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,207 pybedtools/cbedtools.cxx: In function ‘int __pyx_CyFunction_init()’: 2024-04-26T15:00:01,207 pybedtools/cbedtools.cxx:17384:41: warning: ‘PyObject* PyCFunction_Call(PyObject*, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,207 17384 | __pyx_CyFunctionType_type.tp_call = PyCFunction_Call; 2024-04-26T15:00:01,207 | ^~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,208 In file included from /usr/include/python3.9/Python.h:111, 2024-04-26T15:00:01,208 from pybedtools/cbedtools.cxx:4: 2024-04-26T15:00:01,208 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2024-04-26T15:00:01,208 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2024-04-26T15:00:01,208 | ^~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,208 pybedtools/cbedtools.cxx:17384:41: warning: ‘PyObject* PyCFunction_Call(PyObject*, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2024-04-26T15:00:01,208 17384 | __pyx_CyFunctionType_type.tp_call = PyCFunction_Call; 2024-04-26T15:00:01,209 | ^~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,209 In file included from /usr/include/python3.9/Python.h:111, 2024-04-26T15:00:01,209 from pybedtools/cbedtools.cxx:4: 2024-04-26T15:00:01,209 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2024-04-26T15:00:01,209 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2024-04-26T15:00:01,209 | ^~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,214 pybedtools/cbedtools.cxx: In function ‘int __Pyx_GetException(PyObject**, PyObject**, PyObject**)’: 2024-04-26T15:00:01,214 pybedtools/cbedtools.cxx:17659:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2024-04-26T15:00:01,215 17659 | tmp_type = tstate->exc_type; 2024-04-26T15:00:01,215 | ^~~~~~~~ 2024-04-26T15:00:01,215 | curexc_type 2024-04-26T15:00:01,215 pybedtools/cbedtools.cxx:17660:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2024-04-26T15:00:01,215 17660 | tmp_value = tstate->exc_value; 2024-04-26T15:00:01,215 | ^~~~~~~~~ 2024-04-26T15:00:01,215 | curexc_value 2024-04-26T15:00:01,216 pybedtools/cbedtools.cxx:17661:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2024-04-26T15:00:01,216 17661 | tmp_tb = tstate->exc_traceback; 2024-04-26T15:00:01,216 | ^~~~~~~~~~~~~ 2024-04-26T15:00:01,216 | curexc_traceback 2024-04-26T15:00:01,216 pybedtools/cbedtools.cxx:17662:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2024-04-26T15:00:01,216 17662 | tstate->exc_type = local_type; 2024-04-26T15:00:01,217 | ^~~~~~~~ 2024-04-26T15:00:01,217 | curexc_type 2024-04-26T15:00:01,217 pybedtools/cbedtools.cxx:17663:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2024-04-26T15:00:01,217 17663 | tstate->exc_value = local_value; 2024-04-26T15:00:01,217 | ^~~~~~~~~ 2024-04-26T15:00:01,217 | curexc_value 2024-04-26T15:00:01,217 pybedtools/cbedtools.cxx:17664:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2024-04-26T15:00:01,218 17664 | tstate->exc_traceback = local_tb; 2024-04-26T15:00:01,218 | ^~~~~~~~~~~~~ 2024-04-26T15:00:01,218 | curexc_traceback 2024-04-26T15:00:01,242 pybedtools/cbedtools.cxx: In function ‘void __Pyx_ExceptionSwap(PyObject**, PyObject**, PyObject**)’: 2024-04-26T15:00:01,242 pybedtools/cbedtools.cxx:18181:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2024-04-26T15:00:01,242 18181 | tmp_type = tstate->exc_type; 2024-04-26T15:00:01,242 | ^~~~~~~~ 2024-04-26T15:00:01,243 | curexc_type 2024-04-26T15:00:01,243 pybedtools/cbedtools.cxx:18182:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2024-04-26T15:00:01,243 18182 | tmp_value = tstate->exc_value; 2024-04-26T15:00:01,243 | ^~~~~~~~~ 2024-04-26T15:00:01,243 | curexc_value 2024-04-26T15:00:01,243 pybedtools/cbedtools.cxx:18183:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2024-04-26T15:00:01,244 18183 | tmp_tb = tstate->exc_traceback; 2024-04-26T15:00:01,244 | ^~~~~~~~~~~~~ 2024-04-26T15:00:01,244 | curexc_traceback 2024-04-26T15:00:01,244 pybedtools/cbedtools.cxx:18184:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2024-04-26T15:00:01,244 18184 | tstate->exc_type = *type; 2024-04-26T15:00:01,244 | ^~~~~~~~ 2024-04-26T15:00:01,244 | curexc_type 2024-04-26T15:00:01,244 pybedtools/cbedtools.cxx:18185:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2024-04-26T15:00:01,245 18185 | tstate->exc_value = *value; 2024-04-26T15:00:01,245 | ^~~~~~~~~ 2024-04-26T15:00:01,245 | curexc_value 2024-04-26T15:00:01,245 pybedtools/cbedtools.cxx:18186:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2024-04-26T15:00:01,245 18186 | tstate->exc_traceback = *tb; 2024-04-26T15:00:01,245 | ^~~~~~~~~~~~~ 2024-04-26T15:00:01,245 | curexc_traceback 2024-04-26T15:00:01,825 pybedtools/cbedtools.cxx: At global scope: 2024-04-26T15:00:01,825 pybedtools/cbedtools.cxx:8378:12: warning: ‘int __pyx_pw_10pybedtools_9cbedtools_8Interval_33__nonzero__(PyObject*)’ defined but not used [-Wunused-function] 2024-04-26T15:00:01,826 8378 | static int __pyx_pw_10pybedtools_9cbedtools_8Interval_33__nonzero__(PyObject *__pyx_v_self) { 2024-04-26T15:00:01,826 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-26T15:00:01,846 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2024-04-26T15:00:01,951 ERROR: python setup.py bdist_wheel exited with 1 2024-04-26T15:00:01,969 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2024-04-26T15:00:01,969 exec(compile('"'"''"'"''"'"' 2024-04-26T15:00:01,969 # This is -- a caller that pip uses to run setup.py 2024-04-26T15:00:01,969 # 2024-04-26T15:00:01,969 # - It imports setuptools before invoking setup.py, to enable projects that directly 2024-04-26T15:00:01,969 # import from `distutils.core` to work with newer packaging standards. 2024-04-26T15:00:01,969 # - It provides a clear error message when setuptools is not installed. 2024-04-26T15:00:01,969 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2024-04-26T15:00:01,969 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2024-04-26T15:00:01,969 # manifest_maker: standard file '"'"'-c'"'"' not found". 2024-04-26T15:00:01,969 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2024-04-26T15:00:01,969 import os, sys, tokenize 2024-04-26T15:00:01,969 2024-04-26T15:00:01,969 try: 2024-04-26T15:00:01,969 import setuptools 2024-04-26T15:00:01,969 except ImportError as error: 2024-04-26T15:00:01,969 print( 2024-04-26T15:00:01,969 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2024-04-26T15:00:01,969 "the build environment.", 2024-04-26T15:00:01,969 file=sys.stderr, 2024-04-26T15:00:01,969 ) 2024-04-26T15:00:01,969 sys.exit(1) 2024-04-26T15:00:01,969 2024-04-26T15:00:01,969 __file__ = %r 2024-04-26T15:00:01,969 sys.argv[0] = __file__ 2024-04-26T15:00:01,969 2024-04-26T15:00:01,969 if os.path.exists(__file__): 2024-04-26T15:00:01,969 filename = __file__ 2024-04-26T15:00:01,969 with tokenize.open(__file__) as f: 2024-04-26T15:00:01,969 setup_py_code = f.read() 2024-04-26T15:00:01,969 else: 2024-04-26T15:00:01,969 filename = "" 2024-04-26T15:00:01,969 setup_py_code = "from setuptools import setup; setup()" 2024-04-26T15:00:01,969 2024-04-26T15:00:01,969 exec(compile(setup_py_code, filename, "exec")) 2024-04-26T15:00:01,969 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-84vi45bc/pybedtools_1ab6d144fa134ea3b29d8c71c84d5e3b/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-8q4b815n[/] 2024-04-26T15:00:01,969 [bold magenta]cwd[/]: /tmp/pip-wheel-84vi45bc/pybedtools_1ab6d144fa134ea3b29d8c71c84d5e3b/ 2024-04-26T15:00:01,969 Building wheel for pybedtools (setup.py): finished with status 'error' 2024-04-26T15:00:01,970 ERROR: Failed building wheel for pybedtools 2024-04-26T15:00:01,971 Running setup.py clean for pybedtools 2024-04-26T15:00:01,972 Running command python setup.py clean 2024-04-26T15:00:02,525 /tmp/pip-wheel-84vi45bc/pybedtools_1ab6d144fa134ea3b29d8c71c84d5e3b/setup.py:25: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2024-04-26T15:00:02,526 import pkg_resources 2024-04-26T15:00:03,143 running clean 2024-04-26T15:00:03,289 Failed to build pybedtools 2024-04-26T15:00:03,291 ERROR: Failed to build one or more wheels 2024-04-26T15:00:03,292 Exception information: 2024-04-26T15:00:03,292 Traceback (most recent call last): 2024-04-26T15:00:03,292 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2024-04-26T15:00:03,292 status = run_func(*args) 2024-04-26T15:00:03,292 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2024-04-26T15:00:03,292 return func(self, options, args) 2024-04-26T15:00:03,292 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2024-04-26T15:00:03,292 raise CommandError("Failed to build one or more wheels") 2024-04-26T15:00:03,292 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2024-04-26T15:00:03,294 Removed build tracker: '/tmp/pip-build-tracker-c5ng_9e6'