2024-04-26T21:25:58,394 Created temporary directory: /tmp/pip-build-tracker-vgv5s_qf 2024-04-26T21:25:58,395 Initialized build tracking at /tmp/pip-build-tracker-vgv5s_qf 2024-04-26T21:25:58,395 Created build tracker: /tmp/pip-build-tracker-vgv5s_qf 2024-04-26T21:25:58,396 Entered build tracker: /tmp/pip-build-tracker-vgv5s_qf 2024-04-26T21:25:58,396 Created temporary directory: /tmp/pip-wheel-2_wbnf9u 2024-04-26T21:25:58,400 Created temporary directory: /tmp/pip-ephem-wheel-cache-0o5x1f8z 2024-04-26T21:25:58,426 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-26T21:25:58,429 2 location(s) to search for versions of mikado: 2024-04-26T21:25:58,429 * https://pypi.org/simple/mikado/ 2024-04-26T21:25:58,429 * https://www.piwheels.org/simple/mikado/ 2024-04-26T21:25:58,430 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2024-04-26T21:25:58,430 Getting page https://pypi.org/simple/mikado/ 2024-04-26T21:25:58,432 Found index url https://pypi.org/simple/ 2024-04-26T21:25:58,608 Fetched page https://pypi.org/simple/mikado/ as application/vnd.pypi.simple.v1+json 2024-04-26T21:25:58,613 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2024-04-26T21:25:58,614 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2024-04-26T21:25:58,614 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2024-04-26T21:25:58,614 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0 2024-04-26T21:25:58,615 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.1 2024-04-26T21:25:58,615 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2 2024-04-26T21:25:58,615 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.1 2024-04-26T21:25:58,616 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.2 2024-04-26T21:25:58,616 Skipping link: No binaries permitted for mikado: https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/mikado/) 2024-04-26T21:25:58,616 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.4 2024-04-26T21:25:58,616 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc1 2024-04-26T21:25:58,617 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc2 2024-04-26T21:25:58,617 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2024-04-26T21:25:58,618 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2024-04-26T21:25:58,618 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2024-04-26T21:25:58,619 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2024-04-26T21:25:58,620 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2024-04-26T21:25:58,620 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2024-04-26T21:25:58,621 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2024-04-26T21:25:58,621 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2024-04-26T21:25:58,622 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2024-04-26T21:25:58,622 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2024-04-26T21:25:58,623 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2024-04-26T21:25:58,623 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2024-04-26T21:25:58,624 Found link https://files.pythonhosted.org/packages/8c/7c/70149e3cca2d6e50f302d7615728ecaade107420be6c7f6b52d2c89135b1/Mikado-2.3.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.1 2024-04-26T21:25:58,624 Found link https://files.pythonhosted.org/packages/d1/90/5867a6616f873700d9bd599edbfefe142307d1c0dcefb02f8106bed2794d/Mikado-2.3.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.2 2024-04-26T21:25:58,625 Found link https://files.pythonhosted.org/packages/37/09/898b9cc9c310317368a4a0a71f818fab51a1f7bea5eee895284036116321/Mikado-2.3.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.3 2024-04-26T21:25:58,625 Found link https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.4 2024-04-26T21:25:58,626 Fetching project page and analyzing links: https://www.piwheels.org/simple/mikado/ 2024-04-26T21:25:58,626 Getting page https://www.piwheels.org/simple/mikado/ 2024-04-26T21:25:58,627 Found index url https://www.piwheels.org/simple/ 2024-04-26T21:25:58,913 Fetched page https://www.piwheels.org/simple/mikado/ as text/html 2024-04-26T21:25:58,987 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv7l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,988 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv6l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,989 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv7l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,989 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv6l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,989 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv7l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,990 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv6l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,990 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv7l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,991 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv6l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,991 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv7l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,992 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv6l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,992 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv7l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,992 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv6l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,993 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv7l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,993 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv6l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,994 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv7l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,994 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv6l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,995 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,995 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,995 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv7l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,996 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv6l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,996 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv7l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,997 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv6l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,997 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv7l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,997 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv6l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,998 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv7l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,998 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv6l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,999 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv7l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,999 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv6l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2024-04-26T21:25:58,999 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.3-cp39-cp39-linux_armv7l.whl#sha256=6ab7b92ed4d7a2e550425206bf76466c2a06204965e72e2a037d0619c1176c17 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2024-04-26T21:25:59,000 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,014 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp311-cp311-linux_armv7l.whl#sha256=f046bdaea4a2cf6889ea15964c360551b58427311379d68e8d438b673e4f4d97 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,014 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp311-cp311-linux_armv6l.whl#sha256=f046bdaea4a2cf6889ea15964c360551b58427311379d68e8d438b673e4f4d97 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,015 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv7l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,015 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,016 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp37-cp37m-linux_armv7l.whl#sha256=8a63835167df1009a262783fca90ce25f88aad46ebf235820d7f21cea9e27926 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,016 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp311-cp311-linux_armv7l.whl#sha256=69c57b0a7e661700c4d7c775e26f5acf8fc27f2732d78c6325ecbf52106b4225 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,016 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp311-cp311-linux_armv6l.whl#sha256=69c57b0a7e661700c4d7c775e26f5acf8fc27f2732d78c6325ecbf52106b4225 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,016 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv7l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,016 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv6l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,017 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,017 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,017 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp311-cp311-linux_armv7l.whl#sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,017 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp311-cp311-linux_armv6l.whl#sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,017 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv6l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,018 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv7l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,018 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,018 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,018 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,018 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,018 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp311-cp311-linux_armv7l.whl#sha256=8cb994b5e0b5076b40fd77ebadda7a599cb19d680ca175eba47f43e372701c97 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,019 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp311-cp311-linux_armv6l.whl#sha256=8cb994b5e0b5076b40fd77ebadda7a599cb19d680ca175eba47f43e372701c97 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,019 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv6l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,019 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv7l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,019 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv7l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,019 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv6l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,020 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv7l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,020 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv6l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,020 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv7l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,020 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv6l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,020 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv7l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,021 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv6l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,021 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv7l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,021 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv6l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,021 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv7l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,021 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv6l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,021 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv6l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,022 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv7l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,022 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv7l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,022 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv6l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,022 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv6l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,022 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv7l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,023 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv7l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,023 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv6l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,023 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv6l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,023 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv7l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,023 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv7l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,024 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv6l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,024 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv6l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,024 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv7l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,024 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv6l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,024 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv7l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2024-04-26T21:25:59,025 Skipping link: not a file: https://www.piwheels.org/simple/mikado/ 2024-04-26T21:25:59,025 Skipping link: not a file: https://pypi.org/simple/mikado/ 2024-04-26T21:25:59,046 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2024-04-26T21:25:59,062 Collecting mikado==1.2 2024-04-26T21:25:59,064 Created temporary directory: /tmp/pip-unpack-a0ev04ui 2024-04-26T21:25:59,195 Downloading Mikado-1.2.tar.gz (17.0 MB) 2024-04-26T21:26:04,287 Added mikado==1.2 from https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz to build tracker '/tmp/pip-build-tracker-vgv5s_qf' 2024-04-26T21:26:04,288 Running setup.py (path:/tmp/pip-wheel-2_wbnf9u/mikado_1b3dcc83baec4ec59857c8f3bc785739/setup.py) egg_info for package mikado 2024-04-26T21:26:04,289 Created temporary directory: /tmp/pip-pip-egg-info-3q3evhy2 2024-04-26T21:26:04,289 Preparing metadata (setup.py): started 2024-04-26T21:26:04,290 Running command python setup.py egg_info 2024-04-26T21:26:06,256 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-2_wbnf9u/mikado_1b3dcc83baec4ec59857c8f3bc785739/Mikado/scales/contrast.pxd 2024-04-26T21:26:06,257 tree = Parsing.p_module(s, pxd, full_module_name) 2024-04-26T21:26:06,831 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-2_wbnf9u/mikado_1b3dcc83baec4ec59857c8f3bc785739/Mikado/scales/f1.pxd 2024-04-26T21:26:06,831 tree = Parsing.p_module(s, pxd, full_module_name) 2024-04-26T21:26:06,897 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-2_wbnf9u/mikado_1b3dcc83baec4ec59857c8f3bc785739/Mikado/utilities/intervaltree.pyx 2024-04-26T21:26:06,897 tree = Parsing.p_module(s, pxd, full_module_name) 2024-04-26T21:26:07,614 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-2_wbnf9u/mikado_1b3dcc83baec4ec59857c8f3bc785739/Mikado/utilities/overlap.pxd 2024-04-26T21:26:07,614 tree = Parsing.p_module(s, pxd, full_module_name) 2024-04-26T21:26:07,703 Compiling Mikado/utilities/overlap.pyx because it changed. 2024-04-26T21:26:07,703 Compiling Mikado/scales/f1.pyx because it changed. 2024-04-26T21:26:07,703 Compiling Mikado/scales/contrast.pyx because it changed. 2024-04-26T21:26:07,703 Compiling Mikado/utilities/intervaltree.pyx because it changed. 2024-04-26T21:26:07,703 [1/4] Cythonizing Mikado/scales/contrast.pyx 2024-04-26T21:26:07,703 [2/4] Cythonizing Mikado/scales/f1.pyx 2024-04-26T21:26:07,704 [3/4] Cythonizing Mikado/utilities/intervaltree.pyx 2024-04-26T21:26:07,704 [4/4] Cythonizing Mikado/utilities/overlap.pyx 2024-04-26T21:26:08,313 running egg_info 2024-04-26T21:26:08,314 creating /tmp/pip-pip-egg-info-3q3evhy2/Mikado.egg-info 2024-04-26T21:26:08,447 writing /tmp/pip-pip-egg-info-3q3evhy2/Mikado.egg-info/PKG-INFO 2024-04-26T21:26:08,453 writing dependency_links to /tmp/pip-pip-egg-info-3q3evhy2/Mikado.egg-info/dependency_links.txt 2024-04-26T21:26:08,455 writing entry points to /tmp/pip-pip-egg-info-3q3evhy2/Mikado.egg-info/entry_points.txt 2024-04-26T21:26:08,458 writing requirements to /tmp/pip-pip-egg-info-3q3evhy2/Mikado.egg-info/requires.txt 2024-04-26T21:26:08,460 writing top-level names to /tmp/pip-pip-egg-info-3q3evhy2/Mikado.egg-info/top_level.txt 2024-04-26T21:26:08,461 writing manifest file '/tmp/pip-pip-egg-info-3q3evhy2/Mikado.egg-info/SOURCES.txt' 2024-04-26T21:26:08,688 reading manifest file '/tmp/pip-pip-egg-info-3q3evhy2/Mikado.egg-info/SOURCES.txt' 2024-04-26T21:26:08,689 reading manifest template 'MANIFEST.in' 2024-04-26T21:26:09,233 warning: no previously-included files matching '*' found under directory 'docs/' 2024-04-26T21:26:09,234 adding license file 'AUTHORS' 2024-04-26T21:26:09,253 writing manifest file '/tmp/pip-pip-egg-info-3q3evhy2/Mikado.egg-info/SOURCES.txt' 2024-04-26T21:26:09,439 Preparing metadata (setup.py): finished with status 'done' 2024-04-26T21:26:09,443 Source in /tmp/pip-wheel-2_wbnf9u/mikado_1b3dcc83baec4ec59857c8f3bc785739 has version 1.2, which satisfies requirement mikado==1.2 from https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz 2024-04-26T21:26:09,444 Removed mikado==1.2 from https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz from build tracker '/tmp/pip-build-tracker-vgv5s_qf' 2024-04-26T21:26:09,449 Created temporary directory: /tmp/pip-unpack-6jszf30z 2024-04-26T21:26:09,449 Created temporary directory: /tmp/pip-unpack-42ala5lt 2024-04-26T21:26:09,483 Building wheels for collected packages: mikado 2024-04-26T21:26:09,487 Created temporary directory: /tmp/pip-wheel-w15y2h4w 2024-04-26T21:26:09,487 Building wheel for mikado (setup.py): started 2024-04-26T21:26:09,488 Destination directory: /tmp/pip-wheel-w15y2h4w 2024-04-26T21:26:09,489 Running command python setup.py bdist_wheel 2024-04-26T21:26:11,228 running bdist_wheel 2024-04-26T21:26:11,390 running build 2024-04-26T21:26:11,390 running build_py 2024-04-26T21:26:11,434 creating build/lib.linux-armv7l-cpython-39 2024-04-26T21:26:11,435 creating build/lib.linux-armv7l-cpython-39/Mikado 2024-04-26T21:26:11,436 copying Mikado/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado 2024-04-26T21:26:11,438 copying Mikado/exceptions.py -> build/lib.linux-armv7l-cpython-39/Mikado 2024-04-26T21:26:11,439 copying Mikado/version.py -> build/lib.linux-armv7l-cpython-39/Mikado 2024-04-26T21:26:11,442 creating build/lib.linux-armv7l-cpython-39/Mikado/utilities 2024-04-26T21:26:11,442 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2024-04-26T21:26:11,445 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2024-04-26T21:26:11,446 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2024-04-26T21:26:11,449 creating build/lib.linux-armv7l-cpython-39/Mikado/parsers 2024-04-26T21:26:11,450 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2024-04-26T21:26:11,453 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2024-04-26T21:26:11,455 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2024-04-26T21:26:11,457 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2024-04-26T21:26:11,460 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2024-04-26T21:26:11,463 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2024-04-26T21:26:11,465 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2024-04-26T21:26:11,468 creating build/lib.linux-armv7l-cpython-39/Mikado/preparation 2024-04-26T21:26:11,469 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/preparation 2024-04-26T21:26:11,470 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-cpython-39/Mikado/preparation 2024-04-26T21:26:11,473 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-cpython-39/Mikado/preparation 2024-04-26T21:26:11,475 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-cpython-39/Mikado/preparation 2024-04-26T21:26:11,478 creating build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,479 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,481 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,483 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,485 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,487 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,490 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,492 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,495 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,498 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,500 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,503 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,505 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,507 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,509 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,510 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,512 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,515 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,516 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,519 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,521 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,523 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,525 copying Mikado/tests/test_bed12.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,527 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,528 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,530 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:11,535 creating build/lib.linux-armv7l-cpython-39/Mikado/transcripts 2024-04-26T21:26:11,535 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts 2024-04-26T21:26:11,538 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts 2024-04-26T21:26:11,539 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts 2024-04-26T21:26:11,541 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts 2024-04-26T21:26:11,545 creating build/lib.linux-armv7l-cpython-39/Mikado/loci 2024-04-26T21:26:11,546 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2024-04-26T21:26:11,548 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2024-04-26T21:26:11,549 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2024-04-26T21:26:11,552 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2024-04-26T21:26:11,554 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2024-04-26T21:26:11,555 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2024-04-26T21:26:11,558 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2024-04-26T21:26:11,560 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2024-04-26T21:26:11,563 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2024-04-26T21:26:11,566 creating build/lib.linux-armv7l-cpython-39/Mikado/picking 2024-04-26T21:26:11,567 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/picking 2024-04-26T21:26:11,569 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-cpython-39/Mikado/picking 2024-04-26T21:26:11,572 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-cpython-39/Mikado/picking 2024-04-26T21:26:11,575 creating build/lib.linux-armv7l-cpython-39/Mikado/configuration 2024-04-26T21:26:11,576 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2024-04-26T21:26:11,578 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2024-04-26T21:26:11,580 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2024-04-26T21:26:11,583 creating build/lib.linux-armv7l-cpython-39/Mikado/daijin 2024-04-26T21:26:11,584 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2024-04-26T21:26:11,587 creating build/lib.linux-armv7l-cpython-39/Mikado/serializers 2024-04-26T21:26:11,588 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers 2024-04-26T21:26:11,589 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers 2024-04-26T21:26:11,591 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers 2024-04-26T21:26:11,593 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers 2024-04-26T21:26:11,596 creating build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2024-04-26T21:26:11,597 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2024-04-26T21:26:11,599 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2024-04-26T21:26:11,601 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2024-04-26T21:26:11,603 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2024-04-26T21:26:11,605 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2024-04-26T21:26:11,608 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2024-04-26T21:26:11,610 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2024-04-26T21:26:11,612 creating build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:11,613 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:11,614 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:11,617 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:11,619 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:11,621 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:11,623 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:11,627 creating build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods 2024-04-26T21:26:11,627 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods 2024-04-26T21:26:11,629 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods 2024-04-26T21:26:11,632 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods 2024-04-26T21:26:11,634 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods 2024-04-26T21:26:11,637 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods 2024-04-26T21:26:11,640 creating build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2024-04-26T21:26:11,641 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2024-04-26T21:26:11,642 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2024-04-26T21:26:11,644 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2024-04-26T21:26:11,646 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2024-04-26T21:26:11,649 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2024-04-26T21:26:11,650 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2024-04-26T21:26:11,652 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2024-04-26T21:26:11,655 creating build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2024-04-26T21:26:11,656 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2024-04-26T21:26:11,658 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2024-04-26T21:26:11,660 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2024-04-26T21:26:11,661 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2024-04-26T21:26:11,663 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2024-04-26T21:26:11,665 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2024-04-26T21:26:11,666 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2024-04-26T21:26:11,668 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2024-04-26T21:26:11,671 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2024-04-26T21:26:11,673 running egg_info 2024-04-26T21:26:11,761 writing Mikado.egg-info/PKG-INFO 2024-04-26T21:26:11,767 writing dependency_links to Mikado.egg-info/dependency_links.txt 2024-04-26T21:26:11,768 writing entry points to Mikado.egg-info/entry_points.txt 2024-04-26T21:26:11,772 writing requirements to Mikado.egg-info/requires.txt 2024-04-26T21:26:11,773 writing top-level names to Mikado.egg-info/top_level.txt 2024-04-26T21:26:11,837 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2024-04-26T21:26:11,850 reading manifest template 'MANIFEST.in' 2024-04-26T21:26:12,440 warning: no previously-included files matching '*' found under directory 'docs/' 2024-04-26T21:26:12,440 adding license file 'AUTHORS' 2024-04-26T21:26:12,470 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2024-04-26T21:26:12,493 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'Mikado.configuration.scoring_files' is absent from the `packages` configuration. 2024-04-26T21:26:12,493 !! 2024-04-26T21:26:12,494 ******************************************************************************** 2024-04-26T21:26:12,494 ############################ 2024-04-26T21:26:12,494 # Package would be ignored # 2024-04-26T21:26:12,494 ############################ 2024-04-26T21:26:12,494 Python recognizes 'Mikado.configuration.scoring_files' as an importable package[^1], 2024-04-26T21:26:12,494 but it is absent from setuptools' `packages` configuration. 2024-04-26T21:26:12,494 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-26T21:26:12,495 package, please make sure that 'Mikado.configuration.scoring_files' is explicitly added 2024-04-26T21:26:12,495 to the `packages` configuration field. 2024-04-26T21:26:12,495 Alternatively, you can also rely on setuptools' discovery methods 2024-04-26T21:26:12,495 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-26T21:26:12,495 instead of `find_packages(...)`/`find:`). 2024-04-26T21:26:12,495 You can read more about "package discovery" on setuptools documentation page: 2024-04-26T21:26:12,496 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-26T21:26:12,496 If you don't want 'Mikado.configuration.scoring_files' to be distributed and are 2024-04-26T21:26:12,496 already explicitly excluding 'Mikado.configuration.scoring_files' via 2024-04-26T21:26:12,496 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-26T21:26:12,496 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-26T21:26:12,496 combination with a more fine grained `package-data` configuration. 2024-04-26T21:26:12,497 You can read more about "package data files" on setuptools documentation page: 2024-04-26T21:26:12,497 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-26T21:26:12,497 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-26T21:26:12,497 even if it does not contain any `.py` files. 2024-04-26T21:26:12,497 On the other hand, currently there is no concept of package data 2024-04-26T21:26:12,497 directory, all directories are treated like packages. 2024-04-26T21:26:12,498 ******************************************************************************** 2024-04-26T21:26:12,498 !! 2024-04-26T21:26:12,498 check.warn(importable) 2024-04-26T21:26:12,498 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'Mikado.tests.__pycache__' is absent from the `packages` configuration. 2024-04-26T21:26:12,498 !! 2024-04-26T21:26:12,498 ******************************************************************************** 2024-04-26T21:26:12,499 ############################ 2024-04-26T21:26:12,499 # Package would be ignored # 2024-04-26T21:26:12,499 ############################ 2024-04-26T21:26:12,499 Python recognizes 'Mikado.tests.__pycache__' as an importable package[^1], 2024-04-26T21:26:12,499 but it is absent from setuptools' `packages` configuration. 2024-04-26T21:26:12,499 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-26T21:26:12,499 package, please make sure that 'Mikado.tests.__pycache__' is explicitly added 2024-04-26T21:26:12,499 to the `packages` configuration field. 2024-04-26T21:26:12,500 Alternatively, you can also rely on setuptools' discovery methods 2024-04-26T21:26:12,500 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-26T21:26:12,500 instead of `find_packages(...)`/`find:`). 2024-04-26T21:26:12,500 You can read more about "package discovery" on setuptools documentation page: 2024-04-26T21:26:12,500 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-26T21:26:12,501 If you don't want 'Mikado.tests.__pycache__' to be distributed and are 2024-04-26T21:26:12,501 already explicitly excluding 'Mikado.tests.__pycache__' via 2024-04-26T21:26:12,501 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-26T21:26:12,501 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-26T21:26:12,501 combination with a more fine grained `package-data` configuration. 2024-04-26T21:26:12,501 You can read more about "package data files" on setuptools documentation page: 2024-04-26T21:26:12,502 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-26T21:26:12,502 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-26T21:26:12,502 even if it does not contain any `.py` files. 2024-04-26T21:26:12,502 On the other hand, currently there is no concept of package data 2024-04-26T21:26:12,502 directory, all directories are treated like packages. 2024-04-26T21:26:12,502 ******************************************************************************** 2024-04-26T21:26:12,503 !! 2024-04-26T21:26:12,503 check.warn(importable) 2024-04-26T21:26:12,503 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'Mikado.tests.fusion_test' is absent from the `packages` configuration. 2024-04-26T21:26:12,503 !! 2024-04-26T21:26:12,504 ******************************************************************************** 2024-04-26T21:26:12,504 ############################ 2024-04-26T21:26:12,504 # Package would be ignored # 2024-04-26T21:26:12,504 ############################ 2024-04-26T21:26:12,504 Python recognizes 'Mikado.tests.fusion_test' as an importable package[^1], 2024-04-26T21:26:12,504 but it is absent from setuptools' `packages` configuration. 2024-04-26T21:26:12,504 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-26T21:26:12,505 package, please make sure that 'Mikado.tests.fusion_test' is explicitly added 2024-04-26T21:26:12,505 to the `packages` configuration field. 2024-04-26T21:26:12,505 Alternatively, you can also rely on setuptools' discovery methods 2024-04-26T21:26:12,505 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-26T21:26:12,505 instead of `find_packages(...)`/`find:`). 2024-04-26T21:26:12,506 You can read more about "package discovery" on setuptools documentation page: 2024-04-26T21:26:12,506 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-26T21:26:12,506 If you don't want 'Mikado.tests.fusion_test' to be distributed and are 2024-04-26T21:26:12,506 already explicitly excluding 'Mikado.tests.fusion_test' via 2024-04-26T21:26:12,506 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-26T21:26:12,506 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-26T21:26:12,507 combination with a more fine grained `package-data` configuration. 2024-04-26T21:26:12,507 You can read more about "package data files" on setuptools documentation page: 2024-04-26T21:26:12,507 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-26T21:26:12,507 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-26T21:26:12,507 even if it does not contain any `.py` files. 2024-04-26T21:26:12,508 On the other hand, currently there is no concept of package data 2024-04-26T21:26:12,508 directory, all directories are treated like packages. 2024-04-26T21:26:12,508 ******************************************************************************** 2024-04-26T21:26:12,508 !! 2024-04-26T21:26:12,508 check.warn(importable) 2024-04-26T21:26:12,519 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2024-04-26T21:26:12,535 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2024-04-26T21:26:12,538 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2024-04-26T21:26:12,549 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2024-04-26T21:26:12,550 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2024-04-26T21:26:12,552 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,687 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,689 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,692 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,694 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,697 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,703 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,725 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,749 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,753 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,755 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,757 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,759 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,762 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,764 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,767 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,770 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,772 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2024-04-26T21:26:12,868 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,869 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,870 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,872 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,874 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,877 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,880 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,883 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,885 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,887 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,890 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,893 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,896 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,899 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,902 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,904 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,907 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,909 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,911 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,914 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,916 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,919 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,921 copying Mikado/tests/__pycache__/test_bed12.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,924 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,926 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,928 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,930 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,932 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,934 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,936 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,938 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,940 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,943 copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,945 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,947 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,949 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,950 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,952 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,954 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,957 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,959 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,961 copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,963 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,965 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,967 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,969 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,971 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,974 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,976 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,978 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,979 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,982 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,984 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,986 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,989 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,991 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,993 copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,996 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:12,999 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,002 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,004 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,007 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,009 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,012 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,014 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,017 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,019 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,022 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,025 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,028 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,031 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,035 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,037 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,040 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,043 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,045 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,047 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__ 2024-04-26T21:26:13,050 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/fusion_test 2024-04-26T21:26:13,050 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-cpython-39/Mikado/tests/fusion_test 2024-04-26T21:26:13,053 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests/fusion_test 2024-04-26T21:26:13,055 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests/fusion_test 2024-04-26T21:26:13,057 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2024-04-26T21:26:13,060 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2024-04-26T21:26:13,063 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2024-04-26T21:26:13,065 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2024-04-26T21:26:13,067 creating build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2024-04-26T21:26:13,067 copying Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2024-04-26T21:26:13,070 copying Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2024-04-26T21:26:13,072 copying Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2024-04-26T21:26:13,074 copying Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2024-04-26T21:26:13,076 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2024-04-26T21:26:13,078 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2024-04-26T21:26:13,080 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2024-04-26T21:26:13,082 copying Mikado/configuration/scoring_files/scerevisiae.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2024-04-26T21:26:13,084 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2024-04-26T21:26:13,086 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2024-04-26T21:26:13,088 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2024-04-26T21:26:13,090 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2024-04-26T21:26:13,091 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2024-04-26T21:26:13,094 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2024-04-26T21:26:13,097 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:13,111 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:13,113 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:13,115 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:13,123 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:13,125 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:13,136 running build_ext 2024-04-26T21:26:13,144 building 'Mikado.utilities.overlap' extension 2024-04-26T21:26:13,145 creating build/temp.linux-armv7l-cpython-39 2024-04-26T21:26:13,146 creating build/temp.linux-armv7l-cpython-39/Mikado 2024-04-26T21:26:13,146 creating build/temp.linux-armv7l-cpython-39/Mikado/utilities 2024-04-26T21:26:13,147 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-cpython-39/Mikado/utilities/overlap.o 2024-04-26T21:26:16,594 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/Mikado/utilities/overlap.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so 2024-04-26T21:26:16,701 building 'Mikado.scales.f1' extension 2024-04-26T21:26:16,702 creating build/temp.linux-armv7l-cpython-39/Mikado/scales 2024-04-26T21:26:16,702 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-cpython-39/Mikado/scales/f1.o 2024-04-26T21:26:19,444 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/Mikado/scales/f1.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/Mikado/scales/f1.cpython-39-arm-linux-gnueabihf.so 2024-04-26T21:26:19,577 building 'Mikado.scales.contrast' extension 2024-04-26T21:26:19,578 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-cpython-39/Mikado/scales/contrast.o 2024-04-26T21:26:31,778 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/Mikado/scales/contrast.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/Mikado/scales/contrast.cpython-39-arm-linux-gnueabihf.so 2024-04-26T21:26:31,899 building 'Mikado.utilities.intervaltree' extension 2024-04-26T21:26:31,899 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-cpython-39/Mikado/utilities/intervaltree.o 2024-04-26T21:26:50,528 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/Mikado/utilities/intervaltree.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/Mikado/utilities/intervaltree.cpython-39-arm-linux-gnueabihf.so 2024-04-26T21:26:50,663 running build_scripts 2024-04-26T21:26:50,664 creating build/scripts-3.9 2024-04-26T21:26:50,665 copying and adjusting util/align_collect.py -> build/scripts-3.9 2024-04-26T21:26:50,668 copying and adjusting util/remove_from_embl.py -> build/scripts-3.9 2024-04-26T21:26:50,669 copying and adjusting util/create_model.py -> build/scripts-3.9 2024-04-26T21:26:50,671 copying and adjusting util/class_run.py -> build/scripts-3.9 2024-04-26T21:26:50,673 copying and adjusting util/sanitize_blast_db.py -> build/scripts-3.9 2024-04-26T21:26:50,674 copying and adjusting util/extract_promoter_regions.py -> build/scripts-3.9 2024-04-26T21:26:50,676 copying and adjusting util/convert_cdna_match_gff3.py -> build/scripts-3.9 2024-04-26T21:26:50,678 copying and adjusting util/remove_utrs.py -> build/scripts-3.9 2024-04-26T21:26:50,679 copying and adjusting util/self_training.py -> build/scripts-3.9 2024-04-26T21:26:50,681 copying and adjusting util/trim_long_introns.py -> build/scripts-3.9 2024-04-26T21:26:50,683 copying and adjusting util/calculate_distances.py -> build/scripts-3.9 2024-04-26T21:26:50,686 copying util/tease_maker_apart.py -> build/scripts-3.9 2024-04-26T21:26:50,687 copying and adjusting util/asm_collect.py -> build/scripts-3.9 2024-04-26T21:26:50,689 copying and adjusting util/analyse_metrics.py -> build/scripts-3.9 2024-04-26T21:26:50,691 copying and adjusting util/add_transcript_feature_to_gtf.py -> build/scripts-3.9 2024-04-26T21:26:50,692 copying and adjusting util/merge_junction_bed12.py -> build/scripts-3.9 2024-04-26T21:26:50,694 copying and adjusting util/grep.py -> build/scripts-3.9 2024-04-26T21:26:50,695 copying and adjusting util/bam2gtf.py -> build/scripts-3.9 2024-04-26T21:26:50,697 copying and adjusting util/split_fasta.py -> build/scripts-3.9 2024-04-26T21:26:50,699 copying and adjusting util/gffjunc_to_bed12.py -> build/scripts-3.9 2024-04-26T21:26:50,701 copying and adjusting util/getFastaFromIds.py -> build/scripts-3.9 2024-04-26T21:26:50,702 changing mode of build/scripts-3.9/align_collect.py from 644 to 755 2024-04-26T21:26:50,702 changing mode of build/scripts-3.9/remove_from_embl.py from 644 to 755 2024-04-26T21:26:50,702 changing mode of build/scripts-3.9/create_model.py from 644 to 755 2024-04-26T21:26:50,703 changing mode of build/scripts-3.9/class_run.py from 644 to 755 2024-04-26T21:26:50,703 changing mode of build/scripts-3.9/sanitize_blast_db.py from 644 to 755 2024-04-26T21:26:50,703 changing mode of build/scripts-3.9/extract_promoter_regions.py from 644 to 755 2024-04-26T21:26:50,704 changing mode of build/scripts-3.9/convert_cdna_match_gff3.py from 644 to 755 2024-04-26T21:26:50,704 changing mode of build/scripts-3.9/remove_utrs.py from 644 to 755 2024-04-26T21:26:50,704 changing mode of build/scripts-3.9/self_training.py from 644 to 755 2024-04-26T21:26:50,705 changing mode of build/scripts-3.9/trim_long_introns.py from 644 to 755 2024-04-26T21:26:50,705 changing mode of build/scripts-3.9/calculate_distances.py from 644 to 755 2024-04-26T21:26:50,705 changing mode of build/scripts-3.9/tease_maker_apart.py from 644 to 755 2024-04-26T21:26:50,705 changing mode of build/scripts-3.9/asm_collect.py from 644 to 755 2024-04-26T21:26:50,706 changing mode of build/scripts-3.9/analyse_metrics.py from 644 to 755 2024-04-26T21:26:50,706 changing mode of build/scripts-3.9/add_transcript_feature_to_gtf.py from 644 to 755 2024-04-26T21:26:50,706 changing mode of build/scripts-3.9/merge_junction_bed12.py from 644 to 755 2024-04-26T21:26:50,707 changing mode of build/scripts-3.9/grep.py from 644 to 755 2024-04-26T21:26:50,707 changing mode of build/scripts-3.9/bam2gtf.py from 644 to 755 2024-04-26T21:26:50,707 changing mode of build/scripts-3.9/split_fasta.py from 644 to 755 2024-04-26T21:26:50,708 changing mode of build/scripts-3.9/gffjunc_to_bed12.py from 644 to 755 2024-04-26T21:26:50,708 changing mode of build/scripts-3.9/getFastaFromIds.py from 644 to 755 2024-04-26T21:26:50,753 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-04-26T21:26:50,753 !! 2024-04-26T21:26:50,753 ******************************************************************************** 2024-04-26T21:26:50,753 Please avoid running ``setup.py`` directly. 2024-04-26T21:26:50,754 Instead, use pypa/build, pypa/installer or other 2024-04-26T21:26:50,754 standards-based tools. 2024-04-26T21:26:50,754 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-04-26T21:26:50,754 ******************************************************************************** 2024-04-26T21:26:50,754 !! 2024-04-26T21:26:50,755 self.initialize_options() 2024-04-26T21:26:50,794 installing to build/bdist.linux-armv7l/wheel 2024-04-26T21:26:50,794 running install 2024-04-26T21:26:50,819 running install_lib 2024-04-26T21:26:50,861 creating build/bdist.linux-armv7l 2024-04-26T21:26:50,862 creating build/bdist.linux-armv7l/wheel 2024-04-26T21:26:50,863 creating build/bdist.linux-armv7l/wheel/Mikado 2024-04-26T21:26:50,865 creating build/bdist.linux-armv7l/wheel/Mikado/utilities 2024-04-26T21:26:50,866 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2024-04-26T21:26:50,868 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/log_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2024-04-26T21:26:50,870 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/intervaltree.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2024-04-26T21:26:50,872 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/overlap.pxd -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2024-04-26T21:26:50,874 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/overlap.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2024-04-26T21:26:50,880 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/overlap.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2024-04-26T21:26:50,882 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/intervaltree.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2024-04-26T21:26:50,904 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/dbutils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2024-04-26T21:26:50,906 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/intervaltree.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2024-04-26T21:26:50,923 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2024-04-26T21:26:50,929 copying build/lib.linux-armv7l-cpython-39/Mikado/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado 2024-04-26T21:26:50,931 creating build/bdist.linux-armv7l/wheel/Mikado/parsers 2024-04-26T21:26:50,932 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/GTF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2024-04-26T21:26:50,935 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2024-04-26T21:26:50,937 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/gfannotation.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2024-04-26T21:26:50,939 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/blast_xml.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2024-04-26T21:26:50,941 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/blast_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2024-04-26T21:26:50,944 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/bed12.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2024-04-26T21:26:50,946 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/GFF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2024-04-26T21:26:50,949 creating build/bdist.linux-armv7l/wheel/Mikado/preparation 2024-04-26T21:26:50,950 copying build/lib.linux-armv7l-cpython-39/Mikado/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2024-04-26T21:26:50,951 copying build/lib.linux-armv7l-cpython-39/Mikado/preparation/annotation_parser.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2024-04-26T21:26:50,954 copying build/lib.linux-armv7l-cpython-39/Mikado/preparation/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2024-04-26T21:26:50,956 copying build/lib.linux-armv7l-cpython-39/Mikado/preparation/checking.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2024-04-26T21:26:50,959 creating build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,960 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_json.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,963 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,964 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.cDNA_match.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,966 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,968 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_system_calls.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,971 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/utilities_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,973 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/scoring_only_cds.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,975 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/plants.suspicious_requirement.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,976 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,979 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_db_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,981 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/transcript_tester_positive.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,984 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/transcript_tester_single.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,986 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/transcript_tester_negative.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,989 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/cufflinks.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,991 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/intervaltree_tests.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,993 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,996 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_transcript_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:50,999 creating build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,000 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,003 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,006 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,008 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,011 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,012 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,015 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,017 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,020 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,021 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,023 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,026 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,027 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,030 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,033 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,035 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,037 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,039 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,042 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,043 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_bed12.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,045 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,048 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,051 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,053 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,055 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,057 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,061 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,062 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,064 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,066 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,068 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,070 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,072 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,075 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,078 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,081 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,086 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,089 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,094 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,098 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,103 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,106 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,109 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,113 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,118 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,124 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,130 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,139 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,146 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,154 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,161 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,168 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,175 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,182 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,193 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,207 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,223 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,239 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,258 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,276 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,281 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,283 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,285 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,287 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,289 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,292 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,294 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,297 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,299 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,300 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,303 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,304 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,306 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,308 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,310 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,312 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2024-04-26T21:26:51,315 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,416 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.match_matchpart.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,419 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/parser_testing.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,421 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,423 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/orf_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,426 creating build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2024-04-26T21:26:51,427 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/fusion_test/fusion_test.log -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2024-04-26T21:26:51,429 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2024-04-26T21:26:51,432 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2024-04-26T21:26:51,434 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_transcript_checker.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,437 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,440 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/mikado_prepared.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,444 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_blast_related.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,445 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/mikado.blast.xml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,465 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/configuration.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,467 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/plants.yaml~ -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,469 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/assigner_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,472 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_scores.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,474 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_serialisation.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,476 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/chr5.fas.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,592 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/junctions.bed -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,595 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_invalid_orfs.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,597 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/genome.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,599 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity_stats.txt -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,601 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,604 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/mikado.blast.asn.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,609 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/mikado.db -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,635 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_modifications.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,637 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,640 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/locus_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2024-04-26T21:26:51,645 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts 2024-04-26T21:26:51,646 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2024-04-26T21:26:51,647 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2024-04-26T21:26:51,650 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods/finalizing.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2024-04-26T21:26:51,653 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods/splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2024-04-26T21:26:51,656 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods/retrieval.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2024-04-26T21:26:51,659 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods/printing.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2024-04-26T21:26:51,662 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcriptchecker.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2024-04-26T21:26:51,665 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2024-04-26T21:26:51,667 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2024-04-26T21:26:51,670 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2024-04-26T21:26:51,675 copying build/lib.linux-armv7l-cpython-39/Mikado/exceptions.py -> build/bdist.linux-armv7l/wheel/Mikado 2024-04-26T21:26:51,677 creating build/bdist.linux-armv7l/wheel/Mikado/loci 2024-04-26T21:26:51,678 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2024-04-26T21:26:51,681 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/excluded.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2024-04-26T21:26:51,683 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/reference_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2024-04-26T21:26:51,686 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/sublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2024-04-26T21:26:51,689 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/monosublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2024-04-26T21:26:51,691 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/locus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2024-04-26T21:26:51,695 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/monosublocusholder.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2024-04-26T21:26:51,697 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/abstractlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2024-04-26T21:26:51,701 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/superlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2024-04-26T21:26:51,706 creating build/bdist.linux-armv7l/wheel/Mikado/picking 2024-04-26T21:26:51,707 copying build/lib.linux-armv7l-cpython-39/Mikado/picking/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2024-04-26T21:26:51,709 copying build/lib.linux-armv7l-cpython-39/Mikado/picking/picker.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2024-04-26T21:26:51,713 copying build/lib.linux-armv7l-cpython-39/Mikado/picking/loci_processer.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2024-04-26T21:26:51,717 creating build/bdist.linux-armv7l/wheel/Mikado/configuration 2024-04-26T21:26:51,718 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2024-04-26T21:26:51,721 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/daijin_schema.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2024-04-26T21:26:51,723 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/daijin_configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2024-04-26T21:26:51,726 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/requirements_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2024-04-26T21:26:51,728 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/configuration_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2024-04-26T21:26:51,732 creating build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2024-04-26T21:26:51,733 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/human.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2024-04-26T21:26:51,736 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2024-04-26T21:26:51,738 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/plants.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2024-04-26T21:26:51,740 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/worm.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2024-04-26T21:26:51,743 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/scerevisiae.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2024-04-26T21:26:51,745 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2024-04-26T21:26:51,747 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2024-04-26T21:26:51,750 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/insects.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2024-04-26T21:26:51,752 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2024-04-26T21:26:51,754 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2024-04-26T21:26:51,756 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2024-04-26T21:26:51,760 copying build/lib.linux-armv7l-cpython-39/Mikado/version.py -> build/bdist.linux-armv7l/wheel/Mikado 2024-04-26T21:26:51,763 creating build/bdist.linux-armv7l/wheel/Mikado/daijin 2024-04-26T21:26:51,764 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2024-04-26T21:26:51,767 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/hpc.json -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2024-04-26T21:26:51,769 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/tr.snakefile -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2024-04-26T21:26:51,773 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/mikado.snakefile -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2024-04-26T21:26:51,776 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/example_config.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2024-04-26T21:26:51,778 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/hpc.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2024-04-26T21:26:51,781 creating build/bdist.linux-armv7l/wheel/Mikado/serializers 2024-04-26T21:26:51,783 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2024-04-26T21:26:51,785 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/junction.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2024-04-26T21:26:51,789 creating build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2024-04-26T21:26:51,790 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2024-04-26T21:26:51,792 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/target.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2024-04-26T21:26:51,795 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/utils.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2024-04-26T21:26:51,798 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/xml_serialiser.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2024-04-26T21:26:51,801 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/query.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2024-04-26T21:26:51,804 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/hit.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2024-04-26T21:26:51,807 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/hsp.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2024-04-26T21:26:51,810 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/orf.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2024-04-26T21:26:51,813 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/external.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2024-04-26T21:26:51,816 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms 2024-04-26T21:26:51,818 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2024-04-26T21:26:51,820 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2024-04-26T21:26:51,823 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/serialise.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2024-04-26T21:26:51,826 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2024-04-26T21:26:51,829 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/configure.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2024-04-26T21:26:51,832 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/pick.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2024-04-26T21:26:51,835 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2024-04-26T21:26:51,836 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2024-04-26T21:26:51,838 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2024-04-26T21:26:51,840 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2024-04-26T21:26:51,842 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/merge_blast.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2024-04-26T21:26:51,844 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/convert.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2024-04-26T21:26:51,846 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/awk_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2024-04-26T21:26:51,847 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/grep.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2024-04-26T21:26:51,849 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/stats.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2024-04-26T21:26:51,852 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/trim.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2024-04-26T21:26:51,854 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/__main__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2024-04-26T21:26:51,857 creating build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,857 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,859 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/contrast.c -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,873 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/contrast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,885 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/contrast.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,887 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,890 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/assigner.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,892 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/resultstorer.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,894 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/f1.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,899 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/f1.c -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,905 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,908 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/contrast.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,909 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/f1.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,911 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/accountant.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,913 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/f1.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2024-04-26T21:26:51,914 running install_egg_info 2024-04-26T21:26:51,964 Copying Mikado.egg-info to build/bdist.linux-armv7l/wheel/Mikado-1.2-py3.9.egg-info 2024-04-26T21:26:51,978 running install_scripts 2024-04-26T21:26:51,979 creating build/bdist.linux-armv7l/wheel/Mikado-1.2.data 2024-04-26T21:26:51,979 creating build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:51,981 copying build/scripts-3.9/align_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:51,982 copying build/scripts-3.9/remove_from_embl.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:51,984 copying build/scripts-3.9/create_model.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:51,986 copying build/scripts-3.9/class_run.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:51,988 copying build/scripts-3.9/sanitize_blast_db.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:51,990 copying build/scripts-3.9/extract_promoter_regions.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:51,991 copying build/scripts-3.9/convert_cdna_match_gff3.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:51,993 copying build/scripts-3.9/remove_utrs.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:51,995 copying build/scripts-3.9/self_training.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:51,997 copying build/scripts-3.9/trim_long_introns.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:51,999 copying build/scripts-3.9/calculate_distances.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:52,001 copying build/scripts-3.9/tease_maker_apart.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:52,003 copying build/scripts-3.9/asm_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:52,004 copying build/scripts-3.9/analyse_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:52,006 copying build/scripts-3.9/add_transcript_feature_to_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:52,008 copying build/scripts-3.9/merge_junction_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:52,010 copying build/scripts-3.9/grep.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:52,011 copying build/scripts-3.9/bam2gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:52,013 copying build/scripts-3.9/split_fasta.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:52,015 copying build/scripts-3.9/gffjunc_to_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:52,017 copying build/scripts-3.9/getFastaFromIds.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts 2024-04-26T21:26:52,018 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/align_collect.py to 755 2024-04-26T21:26:52,018 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/remove_from_embl.py to 755 2024-04-26T21:26:52,019 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/create_model.py to 755 2024-04-26T21:26:52,019 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/class_run.py to 755 2024-04-26T21:26:52,019 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/sanitize_blast_db.py to 755 2024-04-26T21:26:52,020 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/extract_promoter_regions.py to 755 2024-04-26T21:26:52,020 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/convert_cdna_match_gff3.py to 755 2024-04-26T21:26:52,021 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/remove_utrs.py to 755 2024-04-26T21:26:52,021 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/self_training.py to 755 2024-04-26T21:26:52,021 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/trim_long_introns.py to 755 2024-04-26T21:26:52,022 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/calculate_distances.py to 755 2024-04-26T21:26:52,022 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/tease_maker_apart.py to 755 2024-04-26T21:26:52,022 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/asm_collect.py to 755 2024-04-26T21:26:52,023 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/analyse_metrics.py to 755 2024-04-26T21:26:52,023 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/add_transcript_feature_to_gtf.py to 755 2024-04-26T21:26:52,023 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/merge_junction_bed12.py to 755 2024-04-26T21:26:52,024 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/grep.py to 755 2024-04-26T21:26:52,024 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/bam2gtf.py to 755 2024-04-26T21:26:52,024 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/split_fasta.py to 755 2024-04-26T21:26:52,025 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/gffjunc_to_bed12.py to 755 2024-04-26T21:26:52,025 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.data/scripts/getFastaFromIds.py to 755 2024-04-26T21:26:52,053 adding license file "AUTHORS" (matched pattern "AUTHORS*") 2024-04-26T21:26:52,056 creating build/bdist.linux-armv7l/wheel/Mikado-1.2.dist-info/WHEEL 2024-04-26T21:26:52,058 creating '/tmp/pip-wheel-w15y2h4w/Mikado-1.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-26T21:26:52,061 adding 'Mikado/__init__.py' 2024-04-26T21:26:52,062 adding 'Mikado/exceptions.py' 2024-04-26T21:26:52,064 adding 'Mikado/version.py' 2024-04-26T21:26:52,065 adding 'Mikado/configuration/__init__.py' 2024-04-26T21:26:52,069 adding 'Mikado/configuration/configuration_blueprint.json' 2024-04-26T21:26:52,072 adding 'Mikado/configuration/configurator.py' 2024-04-26T21:26:52,074 adding 'Mikado/configuration/daijin_configurator.py' 2024-04-26T21:26:52,076 adding 'Mikado/configuration/daijin_schema.json' 2024-04-26T21:26:52,077 adding 'Mikado/configuration/requirements_blueprint.json' 2024-04-26T21:26:52,079 adding 'Mikado/configuration/scoring_blueprint.json' 2024-04-26T21:26:52,081 adding 'Mikado/configuration/scoring_files/athaliana_scoring.yaml' 2024-04-26T21:26:52,082 adding 'Mikado/configuration/scoring_files/celegans_scoring.yaml' 2024-04-26T21:26:52,084 adding 'Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml' 2024-04-26T21:26:52,085 adding 'Mikado/configuration/scoring_files/hsapiens_scoring.yaml' 2024-04-26T21:26:52,086 adding 'Mikado/configuration/scoring_files/human.yaml' 2024-04-26T21:26:52,087 adding 'Mikado/configuration/scoring_files/insects.yaml' 2024-04-26T21:26:52,089 adding 'Mikado/configuration/scoring_files/plants.yaml' 2024-04-26T21:26:52,090 adding 'Mikado/configuration/scoring_files/scerevisiae.yaml' 2024-04-26T21:26:52,091 adding 'Mikado/configuration/scoring_files/worm.yaml' 2024-04-26T21:26:52,095 adding 'Mikado/daijin/__init__.py' 2024-04-26T21:26:52,096 adding 'Mikado/daijin/example_config.yaml' 2024-04-26T21:26:52,098 adding 'Mikado/daijin/hpc.json' 2024-04-26T21:26:52,099 adding 'Mikado/daijin/hpc.yaml' 2024-04-26T21:26:52,101 adding 'Mikado/daijin/mikado.snakefile' 2024-04-26T21:26:52,105 adding 'Mikado/daijin/tr.snakefile' 2024-04-26T21:26:52,107 adding 'Mikado/loci/__init__.py' 2024-04-26T21:26:52,113 adding 'Mikado/loci/abstractlocus.py' 2024-04-26T21:26:52,115 adding 'Mikado/loci/excluded.py' 2024-04-26T21:26:52,119 adding 'Mikado/loci/locus.py' 2024-04-26T21:26:52,121 adding 'Mikado/loci/monosublocus.py' 2024-04-26T21:26:52,123 adding 'Mikado/loci/monosublocusholder.py' 2024-04-26T21:26:52,126 adding 'Mikado/loci/reference_gene.py' 2024-04-26T21:26:52,128 adding 'Mikado/loci/sublocus.py' 2024-04-26T21:26:52,134 adding 'Mikado/loci/superlocus.py' 2024-04-26T21:26:52,137 adding 'Mikado/parsers/GFF.py' 2024-04-26T21:26:52,139 adding 'Mikado/parsers/GTF.py' 2024-04-26T21:26:52,140 adding 'Mikado/parsers/__init__.py' 2024-04-26T21:26:52,144 adding 'Mikado/parsers/bed12.py' 2024-04-26T21:26:52,147 adding 'Mikado/parsers/blast_utils.py' 2024-04-26T21:26:52,151 adding 'Mikado/parsers/blast_xml.py' 2024-04-26T21:26:52,153 adding 'Mikado/parsers/gfannotation.py' 2024-04-26T21:26:52,155 adding 'Mikado/picking/__init__.py' 2024-04-26T21:26:52,159 adding 'Mikado/picking/loci_processer.py' 2024-04-26T21:26:52,165 adding 'Mikado/picking/picker.py' 2024-04-26T21:26:52,166 adding 'Mikado/preparation/__init__.py' 2024-04-26T21:26:52,169 adding 'Mikado/preparation/annotation_parser.py' 2024-04-26T21:26:52,170 adding 'Mikado/preparation/checking.py' 2024-04-26T21:26:52,173 adding 'Mikado/preparation/prepare.py' 2024-04-26T21:26:52,175 adding 'Mikado/scales/__init__.py' 2024-04-26T21:26:52,179 adding 'Mikado/scales/accountant.py' 2024-04-26T21:26:52,184 adding 'Mikado/scales/assigner.py' 2024-04-26T21:26:52,186 adding 'Mikado/scales/class_codes.py' 2024-04-26T21:26:52,189 adding 'Mikado/scales/compare.py' 2024-04-26T21:26:52,235 adding 'Mikado/scales/contrast.c' 2024-04-26T21:26:52,366 adding 'Mikado/scales/contrast.cpython-39-arm-linux-gnueabihf.so' 2024-04-26T21:26:52,371 adding 'Mikado/scales/contrast.pxd' 2024-04-26T21:26:52,374 adding 'Mikado/scales/contrast.pyx' 2024-04-26T21:26:52,400 adding 'Mikado/scales/f1.c' 2024-04-26T21:26:52,439 adding 'Mikado/scales/f1.cpython-39-arm-linux-gnueabihf.so' 2024-04-26T21:26:52,442 adding 'Mikado/scales/f1.pxd' 2024-04-26T21:26:52,443 adding 'Mikado/scales/f1.pyx' 2024-04-26T21:26:52,444 adding 'Mikado/scales/resultstorer.py' 2024-04-26T21:26:52,446 adding 'Mikado/serializers/__init__.py' 2024-04-26T21:26:52,447 adding 'Mikado/serializers/external.py' 2024-04-26T21:26:52,449 adding 'Mikado/serializers/junction.py' 2024-04-26T21:26:52,451 adding 'Mikado/serializers/orf.py' 2024-04-26T21:26:52,453 adding 'Mikado/serializers/blast_serializer/__init__.py' 2024-04-26T21:26:52,455 adding 'Mikado/serializers/blast_serializer/hit.py' 2024-04-26T21:26:52,457 adding 'Mikado/serializers/blast_serializer/hsp.py' 2024-04-26T21:26:52,458 adding 'Mikado/serializers/blast_serializer/query.py' 2024-04-26T21:26:52,459 adding 'Mikado/serializers/blast_serializer/target.py' 2024-04-26T21:26:52,461 adding 'Mikado/serializers/blast_serializer/utils.py' 2024-04-26T21:26:52,465 adding 'Mikado/serializers/blast_serializer/xml_serialiser.py' 2024-04-26T21:26:52,467 adding 'Mikado/subprograms/__init__.py' 2024-04-26T21:26:52,468 adding 'Mikado/subprograms/__main__.py' 2024-04-26T21:26:52,469 adding 'Mikado/subprograms/compare.py' 2024-04-26T21:26:52,472 adding 'Mikado/subprograms/configure.py' 2024-04-26T21:26:52,474 adding 'Mikado/subprograms/pick.py' 2024-04-26T21:26:52,476 adding 'Mikado/subprograms/prepare.py' 2024-04-26T21:26:52,478 adding 'Mikado/subprograms/serialise.py' 2024-04-26T21:26:52,480 adding 'Mikado/subprograms/util/__init__.py' 2024-04-26T21:26:52,482 adding 'Mikado/subprograms/util/awk_gtf.py' 2024-04-26T21:26:52,483 adding 'Mikado/subprograms/util/class_codes.py' 2024-04-26T21:26:52,484 adding 'Mikado/subprograms/util/convert.py' 2024-04-26T21:26:52,486 adding 'Mikado/subprograms/util/grep.py' 2024-04-26T21:26:52,487 adding 'Mikado/subprograms/util/merge_blast.py' 2024-04-26T21:26:52,489 adding 'Mikado/subprograms/util/metrics.py' 2024-04-26T21:26:52,492 adding 'Mikado/subprograms/util/stats.py' 2024-04-26T21:26:52,494 adding 'Mikado/subprograms/util/trim.py' 2024-04-26T21:26:52,496 adding 'Mikado/tests/__init__.py' 2024-04-26T21:26:52,499 adding 'Mikado/tests/assigner_tester.py' 2024-04-26T21:26:53,372 adding 'Mikado/tests/chr5.fas.gz' 2024-04-26T21:26:53,424 adding 'Mikado/tests/configuration.yaml' 2024-04-26T21:26:53,426 adding 'Mikado/tests/cufflinks.gtf' 2024-04-26T21:26:53,427 adding 'Mikado/tests/genome.fai' 2024-04-26T21:26:53,429 adding 'Mikado/tests/intervaltree_tests.py' 2024-04-26T21:26:53,434 adding 'Mikado/tests/junctions.bed' 2024-04-26T21:26:53,440 adding 'Mikado/tests/locus_tester.py' 2024-04-26T21:26:53,465 adding 'Mikado/tests/mikado.blast.asn.gz' 2024-04-26T21:26:53,520 adding 'Mikado/tests/mikado.blast.xml' 2024-04-26T21:26:53,797 adding 'Mikado/tests/mikado.db' 2024-04-26T21:26:53,811 adding 'Mikado/tests/mikado_prepared.gtf' 2024-04-26T21:26:53,818 adding 'Mikado/tests/orf_tester.py' 2024-04-26T21:26:53,819 adding 'Mikado/tests/parser_testing.py' 2024-04-26T21:26:53,820 adding 'Mikado/tests/plants.suspicious_requirement.yaml' 2024-04-26T21:26:53,822 adding 'Mikado/tests/plants.yaml~' 2024-04-26T21:26:53,823 adding 'Mikado/tests/scoring_only_cds.yaml' 2024-04-26T21:26:53,825 adding 'Mikado/tests/test_bed12.py' 2024-04-26T21:26:53,826 adding 'Mikado/tests/test_blast_related.py' 2024-04-26T21:26:53,828 adding 'Mikado/tests/test_clique_methods.py' 2024-04-26T21:26:53,829 adding 'Mikado/tests/test_db_utils.py' 2024-04-26T21:26:53,830 adding 'Mikado/tests/test_external_scores.py' 2024-04-26T21:26:53,831 adding 'Mikado/tests/test_gene.py' 2024-04-26T21:26:53,833 adding 'Mikado/tests/test_invalid_orfs.py' 2024-04-26T21:26:53,834 adding 'Mikado/tests/test_json.py' 2024-04-26T21:26:53,836 adding 'Mikado/tests/test_metrics.py' 2024-04-26T21:26:53,837 adding 'Mikado/tests/test_modifications.py' 2024-04-26T21:26:53,839 adding 'Mikado/tests/test_serialisation.py' 2024-04-26T21:26:53,841 adding 'Mikado/tests/test_splitting.py' 2024-04-26T21:26:53,844 adding 'Mikado/tests/test_system_calls.py' 2024-04-26T21:26:53,846 adding 'Mikado/tests/test_transcript_checker.py' 2024-04-26T21:26:53,848 adding 'Mikado/tests/test_transcript_methods.py' 2024-04-26T21:26:53,851 adding 'Mikado/tests/transcript_tester_negative.py' 2024-04-26T21:26:53,854 adding 'Mikado/tests/transcript_tester_positive.py' 2024-04-26T21:26:53,858 adding 'Mikado/tests/transcript_tester_single.py' 2024-04-26T21:26:53,860 adding 'Mikado/tests/trinity.cDNA_match.gff3' 2024-04-26T21:26:53,862 adding 'Mikado/tests/trinity.gff3' 2024-04-26T21:26:53,865 adding 'Mikado/tests/trinity.gtf' 2024-04-26T21:26:53,867 adding 'Mikado/tests/trinity.match_matchpart.gff3' 2024-04-26T21:26:53,868 adding 'Mikado/tests/trinity_stats.txt' 2024-04-26T21:26:54,583 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz' 2024-04-26T21:26:54,625 adding 'Mikado/tests/utilities_tester.py' 2024-04-26T21:26:54,628 adding 'Mikado/tests/__pycache__/__init__.cpython-34.pyc' 2024-04-26T21:26:54,629 adding 'Mikado/tests/__pycache__/__init__.cpython-35.pyc' 2024-04-26T21:26:54,630 adding 'Mikado/tests/__pycache__/__init__.cpython-36.pyc' 2024-04-26T21:26:54,635 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc' 2024-04-26T21:26:54,640 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc' 2024-04-26T21:26:54,644 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc' 2024-04-26T21:26:54,647 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc' 2024-04-26T21:26:54,649 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc' 2024-04-26T21:26:54,651 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc' 2024-04-26T21:26:54,659 adding 'Mikado/tests/__pycache__/locus_tester.cpython-34.pyc' 2024-04-26T21:26:54,668 adding 'Mikado/tests/__pycache__/locus_tester.cpython-35.pyc' 2024-04-26T21:26:54,676 adding 'Mikado/tests/__pycache__/locus_tester.cpython-36.pyc' 2024-04-26T21:26:54,683 adding 'Mikado/tests/__pycache__/orf_tester.cpython-34.pyc' 2024-04-26T21:26:54,689 adding 'Mikado/tests/__pycache__/orf_tester.cpython-35.pyc' 2024-04-26T21:26:54,695 adding 'Mikado/tests/__pycache__/orf_tester.cpython-36.pyc' 2024-04-26T21:26:54,697 adding 'Mikado/tests/__pycache__/parser_testing.cpython-34.pyc' 2024-04-26T21:26:54,698 adding 'Mikado/tests/__pycache__/parser_testing.cpython-35.pyc' 2024-04-26T21:26:54,700 adding 'Mikado/tests/__pycache__/parser_testing.cpython-36.pyc' 2024-04-26T21:26:54,701 adding 'Mikado/tests/__pycache__/phases_checker.cpython-34.pyc' 2024-04-26T21:26:54,703 adding 'Mikado/tests/__pycache__/phases_checker.cpython-35.pyc' 2024-04-26T21:26:54,706 adding 'Mikado/tests/__pycache__/system_checks.cpython-35.pyc' 2024-04-26T21:26:54,708 adding 'Mikado/tests/__pycache__/test_bed12.cpython-36.pyc' 2024-04-26T21:26:54,709 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc' 2024-04-26T21:26:54,711 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc' 2024-04-26T21:26:54,713 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc' 2024-04-26T21:26:54,714 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc' 2024-04-26T21:26:54,715 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc' 2024-04-26T21:26:54,717 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc' 2024-04-26T21:26:54,719 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc' 2024-04-26T21:26:54,720 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc' 2024-04-26T21:26:54,722 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc' 2024-04-26T21:26:54,723 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc' 2024-04-26T21:26:54,725 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc' 2024-04-26T21:26:54,726 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc' 2024-04-26T21:26:54,727 adding 'Mikado/tests/__pycache__/test_gene.cpython-34.pyc' 2024-04-26T21:26:54,729 adding 'Mikado/tests/__pycache__/test_gene.cpython-35.pyc' 2024-04-26T21:26:54,730 adding 'Mikado/tests/__pycache__/test_gene.cpython-36.pyc' 2024-04-26T21:26:54,732 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc' 2024-04-26T21:26:54,733 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc' 2024-04-26T21:26:54,735 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc' 2024-04-26T21:26:54,736 adding 'Mikado/tests/__pycache__/test_json.cpython-34.pyc' 2024-04-26T21:26:54,738 adding 'Mikado/tests/__pycache__/test_json.cpython-35.pyc' 2024-04-26T21:26:54,739 adding 'Mikado/tests/__pycache__/test_json.cpython-36.pyc' 2024-04-26T21:26:54,741 adding 'Mikado/tests/__pycache__/test_metrics.cpython-34.pyc' 2024-04-26T21:26:54,743 adding 'Mikado/tests/__pycache__/test_metrics.cpython-35.pyc' 2024-04-26T21:26:54,744 adding 'Mikado/tests/__pycache__/test_metrics.cpython-36.pyc' 2024-04-26T21:26:54,746 adding 'Mikado/tests/__pycache__/test_modifications.cpython-34.pyc' 2024-04-26T21:26:54,748 adding 'Mikado/tests/__pycache__/test_modifications.cpython-35.pyc' 2024-04-26T21:26:54,749 adding 'Mikado/tests/__pycache__/test_modifications.cpython-36.pyc' 2024-04-26T21:26:54,751 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc' 2024-04-26T21:26:54,753 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc' 2024-04-26T21:26:54,755 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc' 2024-04-26T21:26:54,757 adding 'Mikado/tests/__pycache__/test_splitting.cpython-34.pyc' 2024-04-26T21:26:54,759 adding 'Mikado/tests/__pycache__/test_splitting.cpython-35.pyc' 2024-04-26T21:26:54,761 adding 'Mikado/tests/__pycache__/test_splitting.cpython-36.pyc' 2024-04-26T21:26:54,765 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc' 2024-04-26T21:26:54,770 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc' 2024-04-26T21:26:54,774 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc' 2024-04-26T21:26:54,776 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc' 2024-04-26T21:26:54,778 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc' 2024-04-26T21:26:54,781 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc' 2024-04-26T21:26:54,786 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc' 2024-04-26T21:26:54,788 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc' 2024-04-26T21:26:54,791 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc' 2024-04-26T21:26:54,794 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc' 2024-04-26T21:26:54,797 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc' 2024-04-26T21:26:54,801 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc' 2024-04-26T21:26:54,806 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc' 2024-04-26T21:26:54,812 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc' 2024-04-26T21:26:54,817 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc' 2024-04-26T21:26:54,821 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc' 2024-04-26T21:26:54,825 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc' 2024-04-26T21:26:54,829 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc' 2024-04-26T21:26:54,831 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc' 2024-04-26T21:26:54,833 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc' 2024-04-26T21:26:54,835 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc' 2024-04-26T21:26:54,837 adding 'Mikado/tests/fusion_test/fusion_test.log' 2024-04-26T21:26:54,838 adding 'Mikado/tests/fusion_test/fusion_test_pred.gtf' 2024-04-26T21:26:54,839 adding 'Mikado/tests/fusion_test/fusion_test_ref.gff3' 2024-04-26T21:26:54,841 adding 'Mikado/transcripts/__init__.py' 2024-04-26T21:26:54,843 adding 'Mikado/transcripts/clique_methods.py' 2024-04-26T21:26:54,854 adding 'Mikado/transcripts/transcript.py' 2024-04-26T21:26:54,857 adding 'Mikado/transcripts/transcriptchecker.py' 2024-04-26T21:26:54,859 adding 'Mikado/transcripts/transcript_methods/__init__.py' 2024-04-26T21:26:54,863 adding 'Mikado/transcripts/transcript_methods/finalizing.py' 2024-04-26T21:26:54,865 adding 'Mikado/transcripts/transcript_methods/printing.py' 2024-04-26T21:26:54,868 adding 'Mikado/transcripts/transcript_methods/retrieval.py' 2024-04-26T21:26:54,873 adding 'Mikado/transcripts/transcript_methods/splitting.py' 2024-04-26T21:26:54,875 adding 'Mikado/utilities/__init__.py' 2024-04-26T21:26:54,876 adding 'Mikado/utilities/dbutils.py' 2024-04-26T21:26:54,945 adding 'Mikado/utilities/intervaltree.c' 2024-04-26T21:26:55,141 adding 'Mikado/utilities/intervaltree.cpython-39-arm-linux-gnueabihf.so' 2024-04-26T21:26:55,150 adding 'Mikado/utilities/intervaltree.pyx' 2024-04-26T21:26:55,152 adding 'Mikado/utilities/log_utils.py' 2024-04-26T21:26:55,178 adding 'Mikado/utilities/overlap.c' 2024-04-26T21:26:55,226 adding 'Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so' 2024-04-26T21:26:55,228 adding 'Mikado/utilities/overlap.pxd' 2024-04-26T21:26:55,230 adding 'Mikado/utilities/overlap.pyx' 2024-04-26T21:26:55,232 adding 'Mikado-1.2.data/scripts/add_transcript_feature_to_gtf.py' 2024-04-26T21:26:55,233 adding 'Mikado-1.2.data/scripts/align_collect.py' 2024-04-26T21:26:55,235 adding 'Mikado-1.2.data/scripts/analyse_metrics.py' 2024-04-26T21:26:55,236 adding 'Mikado-1.2.data/scripts/asm_collect.py' 2024-04-26T21:26:55,237 adding 'Mikado-1.2.data/scripts/bam2gtf.py' 2024-04-26T21:26:55,239 adding 'Mikado-1.2.data/scripts/calculate_distances.py' 2024-04-26T21:26:55,241 adding 'Mikado-1.2.data/scripts/class_run.py' 2024-04-26T21:26:55,242 adding 'Mikado-1.2.data/scripts/convert_cdna_match_gff3.py' 2024-04-26T21:26:55,244 adding 'Mikado-1.2.data/scripts/create_model.py' 2024-04-26T21:26:55,245 adding 'Mikado-1.2.data/scripts/extract_promoter_regions.py' 2024-04-26T21:26:55,247 adding 'Mikado-1.2.data/scripts/getFastaFromIds.py' 2024-04-26T21:26:55,248 adding 'Mikado-1.2.data/scripts/gffjunc_to_bed12.py' 2024-04-26T21:26:55,249 adding 'Mikado-1.2.data/scripts/grep.py' 2024-04-26T21:26:55,251 adding 'Mikado-1.2.data/scripts/merge_junction_bed12.py' 2024-04-26T21:26:55,252 adding 'Mikado-1.2.data/scripts/remove_from_embl.py' 2024-04-26T21:26:55,253 adding 'Mikado-1.2.data/scripts/remove_utrs.py' 2024-04-26T21:26:55,255 adding 'Mikado-1.2.data/scripts/sanitize_blast_db.py' 2024-04-26T21:26:55,257 adding 'Mikado-1.2.data/scripts/self_training.py' 2024-04-26T21:26:55,258 adding 'Mikado-1.2.data/scripts/split_fasta.py' 2024-04-26T21:26:55,259 adding 'Mikado-1.2.data/scripts/tease_maker_apart.py' 2024-04-26T21:26:55,261 adding 'Mikado-1.2.data/scripts/trim_long_introns.py' 2024-04-26T21:26:55,263 adding 'Mikado-1.2.dist-info/AUTHORS' 2024-04-26T21:26:55,264 adding 'Mikado-1.2.dist-info/METADATA' 2024-04-26T21:26:55,265 adding 'Mikado-1.2.dist-info/WHEEL' 2024-04-26T21:26:55,266 adding 'Mikado-1.2.dist-info/entry_points.txt' 2024-04-26T21:26:55,267 adding 'Mikado-1.2.dist-info/top_level.txt' 2024-04-26T21:26:55,271 adding 'Mikado-1.2.dist-info/RECORD' 2024-04-26T21:26:55,465 removing build/bdist.linux-armv7l/wheel 2024-04-26T21:26:55,668 Building wheel for mikado (setup.py): finished with status 'done' 2024-04-26T21:26:55,845 Created wheel for mikado: filename=Mikado-1.2-cp39-cp39-linux_armv7l.whl size=17629815 sha256=dfcb87da8afbf3806c9ba6ac00eb3fcc32717eecd66839e3981624e0c83102b9 2024-04-26T21:26:55,846 Stored in directory: /tmp/pip-ephem-wheel-cache-0o5x1f8z/wheels/c1/e3/e7/db114904fe6421573a1433803115054676747ac963ca8ad629 2024-04-26T21:26:55,872 Successfully built mikado 2024-04-26T21:26:56,288 Removed build tracker: '/tmp/pip-build-tracker-vgv5s_qf'