2024-04-28T18:24:02,448 Created temporary directory: /tmp/pip-build-tracker-4lbzdrln 2024-04-28T18:24:02,449 Initialized build tracking at /tmp/pip-build-tracker-4lbzdrln 2024-04-28T18:24:02,450 Created build tracker: /tmp/pip-build-tracker-4lbzdrln 2024-04-28T18:24:02,450 Entered build tracker: /tmp/pip-build-tracker-4lbzdrln 2024-04-28T18:24:02,451 Created temporary directory: /tmp/pip-wheel-lfj0wrha 2024-04-28T18:24:02,454 Created temporary directory: /tmp/pip-ephem-wheel-cache-zybgfrh9 2024-04-28T18:24:02,476 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-28T18:24:02,479 2 location(s) to search for versions of cpdb-protein: 2024-04-28T18:24:02,479 * https://pypi.org/simple/cpdb-protein/ 2024-04-28T18:24:02,479 * https://www.piwheels.org/simple/cpdb-protein/ 2024-04-28T18:24:02,480 Fetching project page and analyzing links: https://pypi.org/simple/cpdb-protein/ 2024-04-28T18:24:02,481 Getting page https://pypi.org/simple/cpdb-protein/ 2024-04-28T18:24:02,483 Found index url https://pypi.org/simple/ 2024-04-28T18:24:02,694 Fetched page https://pypi.org/simple/cpdb-protein/ as application/vnd.pypi.simple.v1+json 2024-04-28T18:24:02,696 Found link https://files.pythonhosted.org/packages/ed/58/a6f6d0924c7e4be968b8703eec99179403a13ce5e143660abef310a7717b/cpdb-protein-0.0.2.tar.gz (from https://pypi.org/simple/cpdb-protein/), version: 0.0.2 2024-04-28T18:24:02,697 Found link https://files.pythonhosted.org/packages/e6/25/653305959ded3d2da61b6c6d859fb1250c891728f1f821b329b4a808433c/cpdb-protein-0.1.0.tar.gz (from https://pypi.org/simple/cpdb-protein/), version: 0.1.0 2024-04-28T18:24:02,697 Found link https://files.pythonhosted.org/packages/bc/7d/207dd68c474541c4000f61ce823a1c1d2f0a431a63d4f4679b77aab6048f/cpdb-protein-0.2.0.tar.gz (from https://pypi.org/simple/cpdb-protein/), version: 0.2.0 2024-04-28T18:24:02,698 Fetching project page and analyzing links: https://www.piwheels.org/simple/cpdb-protein/ 2024-04-28T18:24:02,698 Getting page https://www.piwheels.org/simple/cpdb-protein/ 2024-04-28T18:24:02,700 Found index url https://www.piwheels.org/simple/ 2024-04-28T18:24:03,222 Fetched page https://www.piwheels.org/simple/cpdb-protein/ as text/html 2024-04-28T18:24:03,226 Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.2.0-cp39-cp39-linux_armv7l.whl#sha256=acdf396dae9feafe2225637cec59b62895fe71c39b795ca9d182e43b4a20d529 (from https://www.piwheels.org/simple/cpdb-protein/) 2024-04-28T18:24:03,227 Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.2.0-cp39-cp39-linux_armv6l.whl#sha256=acdf396dae9feafe2225637cec59b62895fe71c39b795ca9d182e43b4a20d529 (from https://www.piwheels.org/simple/cpdb-protein/) 2024-04-28T18:24:03,227 Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.2.0-cp37-cp37m-linux_armv7l.whl#sha256=11318001e946ad005126a5189bc2779bdb4dd3939ae064d075a268bb798b96f2 (from https://www.piwheels.org/simple/cpdb-protein/) 2024-04-28T18:24:03,228 Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.2.0-cp37-cp37m-linux_armv6l.whl#sha256=11318001e946ad005126a5189bc2779bdb4dd3939ae064d075a268bb798b96f2 (from https://www.piwheels.org/simple/cpdb-protein/) 2024-04-28T18:24:03,229 Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.1.0-cp39-cp39-linux_armv7l.whl#sha256=b63d4d4b0f6f896667bc095a4452c0f770b56197f24b95fbb4ee73d95b0429b2 (from https://www.piwheels.org/simple/cpdb-protein/) 2024-04-28T18:24:03,229 Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.1.0-cp39-cp39-linux_armv6l.whl#sha256=b63d4d4b0f6f896667bc095a4452c0f770b56197f24b95fbb4ee73d95b0429b2 (from https://www.piwheels.org/simple/cpdb-protein/) 2024-04-28T18:24:03,230 Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.1.0-cp37-cp37m-linux_armv7l.whl#sha256=3687d224de19ddc0ac28fd68b69e64b178ac18fc406680daa254e74302d9d286 (from https://www.piwheels.org/simple/cpdb-protein/) 2024-04-28T18:24:03,230 Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.1.0-cp37-cp37m-linux_armv6l.whl#sha256=3687d224de19ddc0ac28fd68b69e64b178ac18fc406680daa254e74302d9d286 (from https://www.piwheels.org/simple/cpdb-protein/) 2024-04-28T18:24:03,231 Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.0.2-cp39-cp39-linux_armv7l.whl#sha256=20b2a381b6c48b7d95899055fcaedad232305b5e3e72404912e427110ca2af51 (from https://www.piwheels.org/simple/cpdb-protein/) 2024-04-28T18:24:03,231 Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.0.2-cp39-cp39-linux_armv6l.whl#sha256=20b2a381b6c48b7d95899055fcaedad232305b5e3e72404912e427110ca2af51 (from https://www.piwheels.org/simple/cpdb-protein/) 2024-04-28T18:24:03,232 Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.0.2-cp37-cp37m-linux_armv7l.whl#sha256=1bb3a8682dcca32281b7e6f610373ebf0e762ad6e260460f0c7036cfb7263c8a (from https://www.piwheels.org/simple/cpdb-protein/) 2024-04-28T18:24:03,232 Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.0.2-cp37-cp37m-linux_armv6l.whl#sha256=1bb3a8682dcca32281b7e6f610373ebf0e762ad6e260460f0c7036cfb7263c8a (from https://www.piwheels.org/simple/cpdb-protein/) 2024-04-28T18:24:03,233 Skipping link: not a file: https://www.piwheels.org/simple/cpdb-protein/ 2024-04-28T18:24:03,233 Skipping link: not a file: https://pypi.org/simple/cpdb-protein/ 2024-04-28T18:24:03,252 Given no hashes to check 1 links for project 'cpdb-protein': discarding no candidates 2024-04-28T18:24:03,270 Collecting cpdb-protein==0.2.0 2024-04-28T18:24:03,273 Created temporary directory: /tmp/pip-unpack-cgo5c7_j 2024-04-28T18:24:03,490 Downloading cpdb-protein-0.2.0.tar.gz (68 kB) 2024-04-28T18:24:03,645 Added cpdb-protein==0.2.0 from https://files.pythonhosted.org/packages/bc/7d/207dd68c474541c4000f61ce823a1c1d2f0a431a63d4f4679b77aab6048f/cpdb-protein-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-4lbzdrln' 2024-04-28T18:24:03,651 Created temporary directory: /tmp/pip-build-env-1e4sfh7j 2024-04-28T18:24:03,655 Installing build dependencies: started 2024-04-28T18:24:03,657 Running command pip subprocess to install build dependencies 2024-04-28T18:24:04,805 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-28T18:24:05,306 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-28T18:24:06,983 Collecting setuptools 2024-04-28T18:24:06,998 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-04-28T18:24:07,222 Collecting wheel 2024-04-28T18:24:07,243 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-28T18:24:08,459 Collecting Cython>=0.29 2024-04-28T18:24:08,477 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp311-cp311-linux_armv7l.whl (11.8 MB) 2024-04-28T18:24:09,505 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-04-28T18:24:09,509 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-04-28T18:24:09,512 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-04-28T18:24:09,515 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-04-28T18:24:09,519 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-04-28T18:24:09,801 Collecting numpy>=1.15 2024-04-28T18:24:09,816 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp311-cp311-linux_armv7l.whl (5.6 MB) 2024-04-28T18:24:12,621 Installing collected packages: wheel, setuptools, numpy, Cython 2024-04-28T18:24:12,845 Creating /tmp/pip-build-env-1e4sfh7j/overlay/local/bin 2024-04-28T18:24:12,847 changing mode of /tmp/pip-build-env-1e4sfh7j/overlay/local/bin/wheel to 755 2024-04-28T18:24:23,487 changing mode of /tmp/pip-build-env-1e4sfh7j/overlay/local/bin/f2py to 755 2024-04-28T18:24:27,035 changing mode of /tmp/pip-build-env-1e4sfh7j/overlay/local/bin/cygdb to 755 2024-04-28T18:24:27,037 changing mode of /tmp/pip-build-env-1e4sfh7j/overlay/local/bin/cython to 755 2024-04-28T18:24:27,039 changing mode of /tmp/pip-build-env-1e4sfh7j/overlay/local/bin/cythonize to 755 2024-04-28T18:24:27,073 Successfully installed Cython-3.0.10 numpy-1.26.4 setuptools-69.5.1 wheel-0.43.0 2024-04-28T18:24:27,860 Installing build dependencies: finished with status 'done' 2024-04-28T18:24:27,873 Getting requirements to build wheel: started 2024-04-28T18:24:27,874 Running command Getting requirements to build wheel 2024-04-28T18:24:31,253 Compiling cpdb/parser.pyx because it changed. 2024-04-28T18:24:31,253 [1/1] Cythonizing cpdb/parser.pyx 2024-04-28T18:24:31,602 Getting requirements to build wheel: finished with status 'done' 2024-04-28T18:24:31,629 Created temporary directory: /tmp/pip-modern-metadata-6ku3bw8i 2024-04-28T18:24:31,631 Preparing metadata (pyproject.toml): started 2024-04-28T18:24:31,633 Running command Preparing metadata (pyproject.toml) 2024-04-28T18:24:33,296 running dist_info 2024-04-28T18:24:33,302 creating /tmp/pip-modern-metadata-6ku3bw8i/cpdb_protein.egg-info 2024-04-28T18:24:33,307 writing /tmp/pip-modern-metadata-6ku3bw8i/cpdb_protein.egg-info/PKG-INFO 2024-04-28T18:24:33,310 writing dependency_links to /tmp/pip-modern-metadata-6ku3bw8i/cpdb_protein.egg-info/dependency_links.txt 2024-04-28T18:24:33,312 writing requirements to /tmp/pip-modern-metadata-6ku3bw8i/cpdb_protein.egg-info/requires.txt 2024-04-28T18:24:33,313 writing top-level names to /tmp/pip-modern-metadata-6ku3bw8i/cpdb_protein.egg-info/top_level.txt 2024-04-28T18:24:33,315 writing manifest file '/tmp/pip-modern-metadata-6ku3bw8i/cpdb_protein.egg-info/SOURCES.txt' 2024-04-28T18:24:33,576 reading manifest file '/tmp/pip-modern-metadata-6ku3bw8i/cpdb_protein.egg-info/SOURCES.txt' 2024-04-28T18:24:33,578 reading manifest template 'MANIFEST.in' 2024-04-28T18:24:33,580 adding license file 'LICENSE' 2024-04-28T18:24:33,582 writing manifest file '/tmp/pip-modern-metadata-6ku3bw8i/cpdb_protein.egg-info/SOURCES.txt' 2024-04-28T18:24:33,583 creating '/tmp/pip-modern-metadata-6ku3bw8i/cpdb_protein-0.2.0.dist-info' 2024-04-28T18:24:33,822 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-28T18:24:33,826 Source in /tmp/pip-wheel-lfj0wrha/cpdb-protein_9b114150dc6440ed8eaa711ab39c4e6b has version 0.2.0, which satisfies requirement cpdb-protein==0.2.0 from https://files.pythonhosted.org/packages/bc/7d/207dd68c474541c4000f61ce823a1c1d2f0a431a63d4f4679b77aab6048f/cpdb-protein-0.2.0.tar.gz 2024-04-28T18:24:33,827 Removed cpdb-protein==0.2.0 from https://files.pythonhosted.org/packages/bc/7d/207dd68c474541c4000f61ce823a1c1d2f0a431a63d4f4679b77aab6048f/cpdb-protein-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-4lbzdrln' 2024-04-28T18:24:33,831 Created temporary directory: /tmp/pip-unpack-2ty7zqe0 2024-04-28T18:24:33,832 Created temporary directory: /tmp/pip-unpack-pu_hajwl 2024-04-28T18:24:33,837 Building wheels for collected packages: cpdb-protein 2024-04-28T18:24:33,841 Created temporary directory: /tmp/pip-wheel-i5fblpfp 2024-04-28T18:24:33,842 Destination directory: /tmp/pip-wheel-i5fblpfp 2024-04-28T18:24:33,844 Building wheel for cpdb-protein (pyproject.toml): started 2024-04-28T18:24:33,845 Running command Building wheel for cpdb-protein (pyproject.toml) 2024-04-28T18:24:35,390 running bdist_wheel 2024-04-28T18:24:35,442 running build 2024-04-28T18:24:35,443 running build_py 2024-04-28T18:24:35,451 creating build 2024-04-28T18:24:35,451 creating build/lib.linux-armv7l-cpython-311 2024-04-28T18:24:35,453 creating build/lib.linux-armv7l-cpython-311/cpdb 2024-04-28T18:24:35,454 copying cpdb/__init__.py -> build/lib.linux-armv7l-cpython-311/cpdb 2024-04-28T18:24:35,457 running build_ext 2024-04-28T18:24:35,465 building 'cpdb.parser' extension 2024-04-28T18:24:35,466 creating build/temp.linux-armv7l-cpython-311 2024-04-28T18:24:35,466 creating build/temp.linux-armv7l-cpython-311/cpdb 2024-04-28T18:24:35,467 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-1e4sfh7j/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c cpdb/parser.c -o build/temp.linux-armv7l-cpython-311/cpdb/parser.o 2024-04-28T18:24:35,880 In file included from /tmp/pip-build-env-1e4sfh7j/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-04-28T18:24:35,880 from /tmp/pip-build-env-1e4sfh7j/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-04-28T18:24:35,881 from /tmp/pip-build-env-1e4sfh7j/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-04-28T18:24:35,882 from cpdb/parser.c:1240: 2024-04-28T18:24:35,882 /tmp/pip-build-env-1e4sfh7j/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-04-28T18:24:35,883 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-04-28T18:24:35,884 | ^~~~~~~ 2024-04-28T18:24:51,724 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/cpdb/parser.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/cpdb/parser.cpython-311-arm-linux-gnueabihf.so 2024-04-28T18:24:51,858 installing to build/bdist.linux-armv7l/wheel 2024-04-28T18:24:51,859 running install 2024-04-28T18:24:51,883 running install_lib 2024-04-28T18:24:51,891 creating build/bdist.linux-armv7l 2024-04-28T18:24:51,891 creating build/bdist.linux-armv7l/wheel 2024-04-28T18:24:51,893 creating build/bdist.linux-armv7l/wheel/cpdb 2024-04-28T18:24:51,894 copying build/lib.linux-armv7l-cpython-311/cpdb/parser.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cpdb 2024-04-28T18:24:51,908 copying build/lib.linux-armv7l-cpython-311/cpdb/__init__.py -> build/bdist.linux-armv7l/wheel/cpdb 2024-04-28T18:24:51,910 running install_egg_info 2024-04-28T18:24:51,925 running egg_info 2024-04-28T18:24:51,930 writing cpdb_protein.egg-info/PKG-INFO 2024-04-28T18:24:51,932 writing dependency_links to cpdb_protein.egg-info/dependency_links.txt 2024-04-28T18:24:51,934 writing requirements to cpdb_protein.egg-info/requires.txt 2024-04-28T18:24:51,935 writing top-level names to cpdb_protein.egg-info/top_level.txt 2024-04-28T18:24:51,944 reading manifest file 'cpdb_protein.egg-info/SOURCES.txt' 2024-04-28T18:24:51,946 reading manifest template 'MANIFEST.in' 2024-04-28T18:24:51,947 adding license file 'LICENSE' 2024-04-28T18:24:51,949 writing manifest file 'cpdb_protein.egg-info/SOURCES.txt' 2024-04-28T18:24:51,951 Copying cpdb_protein.egg-info to build/bdist.linux-armv7l/wheel/cpdb_protein-0.2.0-py3.11.egg-info 2024-04-28T18:24:51,960 running install_scripts 2024-04-28T18:24:52,008 creating build/bdist.linux-armv7l/wheel/cpdb_protein-0.2.0.dist-info/WHEEL 2024-04-28T18:24:52,011 creating '/tmp/pip-wheel-i5fblpfp/.tmp-yfqc448y/cpdb_protein-0.2.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-28T18:24:52,013 adding 'cpdb/__init__.py' 2024-04-28T18:24:52,125 adding 'cpdb/parser.cpython-311-arm-linux-gnueabihf.so' 2024-04-28T18:24:52,131 adding 'cpdb_protein-0.2.0.dist-info/LICENSE' 2024-04-28T18:24:52,132 adding 'cpdb_protein-0.2.0.dist-info/METADATA' 2024-04-28T18:24:52,133 adding 'cpdb_protein-0.2.0.dist-info/WHEEL' 2024-04-28T18:24:52,133 adding 'cpdb_protein-0.2.0.dist-info/top_level.txt' 2024-04-28T18:24:52,134 adding 'cpdb_protein-0.2.0.dist-info/RECORD' 2024-04-28T18:24:52,138 removing build/bdist.linux-armv7l/wheel 2024-04-28T18:24:52,314 Building wheel for cpdb-protein (pyproject.toml): finished with status 'done' 2024-04-28T18:24:52,324 Created wheel for cpdb-protein: filename=cpdb_protein-0.2.0-cp311-cp311-linux_armv7l.whl size=232359 sha256=f35a9c3c3f89a9b63f4fb139aceef6669a8e8e733b84e7674fbd8dac61b8e238 2024-04-28T18:24:52,325 Stored in directory: /tmp/pip-ephem-wheel-cache-zybgfrh9/wheels/9d/0a/be/785478cf0a0939ea190abc78a86ba920af4b262047130b47cc 2024-04-28T18:24:52,334 Successfully built cpdb-protein 2024-04-28T18:24:52,346 Removed build tracker: '/tmp/pip-build-tracker-4lbzdrln'