2024-04-28T21:26:21,843 Created temporary directory: /tmp/pip-build-tracker-cquypwv9
2024-04-28T21:26:21,845 Initialized build tracking at /tmp/pip-build-tracker-cquypwv9
2024-04-28T21:26:21,845 Created build tracker: /tmp/pip-build-tracker-cquypwv9
2024-04-28T21:26:21,846 Entered build tracker: /tmp/pip-build-tracker-cquypwv9
2024-04-28T21:26:21,846 Created temporary directory: /tmp/pip-wheel-l9qywcvz
2024-04-28T21:26:21,849 Created temporary directory: /tmp/pip-ephem-wheel-cache-90iu4xrl
2024-04-28T21:26:21,872 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-04-28T21:26:21,875 2 location(s) to search for versions of scarcc:
2024-04-28T21:26:21,875 * https://pypi.org/simple/scarcc/
2024-04-28T21:26:21,875 * https://www.piwheels.org/simple/scarcc/
2024-04-28T21:26:21,876 Fetching project page and analyzing links: https://pypi.org/simple/scarcc/
2024-04-28T21:26:21,877 Getting page https://pypi.org/simple/scarcc/
2024-04-28T21:26:21,878 Found index url https://pypi.org/simple/
2024-04-28T21:26:22,098 Fetched page https://pypi.org/simple/scarcc/ as application/vnd.pypi.simple.v1+json
2024-04-28T21:26:22,104   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/32/66/7f973d1f25516334d34d62aea227070b5fc80b184d6dca40a27ef12e64e3/scarcc-0.0.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/)
2024-04-28T21:26:22,105   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/2a/89/3e900dfde939e2f3ffa4da4b615295e289c2377d0e0a536b738dbac61847/scarcc-0.0.10-py3-none-any.whl (from https://pypi.org/simple/scarcc/)
2024-04-28T21:26:22,105   Found link https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz (from https://pypi.org/simple/scarcc/), version: 0.0.10
2024-04-28T21:26:22,106   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/c0/32/4840ce6210355020327ee5eda21165a56282d46369e6b1d6d5d8fe537e21/scarcc-0.0.21-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,107   Found link https://files.pythonhosted.org/packages/e0/1d/ddc312f4a66b9a25d346bcab3407258d8fcb07352709ba18827310ad313c/scarcc-0.0.21.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.21
2024-04-28T21:26:22,107   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/9a/e9/6cab4cf589c899c5362e4d18fc1478fce38a123f0af558f8eea5d6b13182/scarcc-0.0.23-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,109   Found link https://files.pythonhosted.org/packages/01/78/0316b97f9db104b44c8c35cc65d526b3a3b22cff44623afeaa7527f1a629/scarcc-0.0.23.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.23
2024-04-28T21:26:22,109   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/3e/71/bca2eab03bc095f1e748d8ad53064453be750c689627ec90e4ae85f60c28/scarcc-0.1.0-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,111   Found link https://files.pythonhosted.org/packages/68/af/324fb934fc7c3238bb792127ab053302fb598faee694823de0b98d319cb3/scarcc-0.1.0.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.0
2024-04-28T21:26:22,111   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/75/6b/711a0973554042f8eab900c92381eba54d1b5d869140a32887d25d8986e9/scarcc-0.1.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,112   Found link https://files.pythonhosted.org/packages/3a/55/e779f80b5835414a3f105214bbd492e88793626073b4977910b6b8d49fe2/scarcc-0.1.1.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.1
2024-04-28T21:26:22,113   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/28/69/e00f174ae9649ccda95c44ef7d68190bfb4d806757682cd0ed448b86fc58/scarcc-0.1.2-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,114   Found link https://files.pythonhosted.org/packages/76/84/2a4b3ac554eda645b5111173da060934263c1d51dfa1bbd6bc3efbda9369/scarcc-0.1.2.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.2
2024-04-28T21:26:22,115   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/20/e1/4040d4340571bfda4c1684de44829cd2b4d9acf65640fd8e94dea7485bd1/scarcc-0.1.3-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,116   Found link https://files.pythonhosted.org/packages/9a/78/141870d1bcd1cd046317dc41694998829d67edc7f2c9f6766c806d84a75e/scarcc-0.1.3.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.3
2024-04-28T21:26:22,116   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/29/43/0630b13a05b3c1acacca561eb6936abc078a8b74801dc6fc3d3deddfdbe9/scarcc-0.1.4-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,117   Found link https://files.pythonhosted.org/packages/03/c7/17a46f539e98f3fb821d40264f161f8a6fe8141cbe7e281ece19adcbf843/scarcc-0.1.4.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.4
2024-04-28T21:26:22,118   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/f3/58/1a8660eef797f1207e6afbd401bc9bf87e382f2ab7944ad1c8a4cfe8004e/scarcc-0.1.5-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,118   Found link https://files.pythonhosted.org/packages/2d/0e/416bb45c9e0f28ee2e58ab634e4fb66d3fb571ea74d5d0ce539f914f1525/scarcc-0.1.5.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.5
2024-04-28T21:26:22,119   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/2d/c7/6ce183543306ec89af5950062a8d2cc76020936a02e73ba45f92a7723b2a/scarcc-0.1.6-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,120   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/13/c1/91ec02bda71738eb8b27d97907bf479992a5fca2ba0c087b29eedd74d371/scarcc-0.1.7-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,121   Found link https://files.pythonhosted.org/packages/cb/ec/b22637ece98a09f869d94f8c33e13f37d6536095e7bc2f184b062ddcc9b1/scarcc-0.1.7.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.7
2024-04-28T21:26:22,122   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/49/49/a0a2b4f018e62d9470448f845ff914460a77acb5eb44b2639beb52dc6686/scarcc-0.1.8-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,122   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/72/5a/d7ff1ccf199c692ad07295c54b50bedf17f12973104c2b758756a10c2313/scarcc-0.1.9-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,123   Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/68/f1/7b4e79abc473f997c5ffbafa3f94d6a2acacb83bd90a7f6020e9afdfdbe2/scarcc-0.1.10-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,124 Fetching project page and analyzing links: https://www.piwheels.org/simple/scarcc/
2024-04-28T21:26:22,124 Getting page https://www.piwheels.org/simple/scarcc/
2024-04-28T21:26:22,126 Found index url https://www.piwheels.org/simple/
2024-04-28T21:26:22,567 Fetched page https://www.piwheels.org/simple/scarcc/ as text/html
2024-04-28T21:26:22,573   Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.5-py3-none-any.whl#sha256=49f716cd35040e38a7d61290afa3f4bcc20ef0d0e38ac524dd4a6d5ece4a0605 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,574   Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.4-py3-none-any.whl#sha256=91b15492bde78fb08ee819c8cb237801aa6f8b074a722610d3c83722a4bcb0b3 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,575   Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.3-py3-none-any.whl#sha256=b903747d0529e1a6a14bf17b79a839c1e515a4e550ac462f1041e98516686c1d (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,575   Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.2-py3-none-any.whl#sha256=a465928c10fba6025f08f5eeb9d6d01113e5ce57f6ee6f2b96ab57315293fef3 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,576   Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.1-py3-none-any.whl#sha256=49bc30639987874b31a8133c4976179ca76d46070620c5e00fb2c342f83a5164 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,576   Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.0-py3-none-any.whl#sha256=de9f345b75c2ff3a756e8e5ec80ad3d7389d2da95004706231b4a8f3c94b7228 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,577   Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.23-py3-none-any.whl#sha256=ec7ecb8295fee00c9793b736528d5721a671763fc5e6c9eb346cff07a8d90e48 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,577   Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.21-py3-none-any.whl#sha256=60324a3750ab0872a4899af7e1d1d7473e5afbf73bc24e32d4813a7173237c5f (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10)
2024-04-28T21:26:22,578   Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.10-py3-none-any.whl#sha256=0b4afea4ec53795f21e57430c1f7f849ded79621b716982836453a570fda8d29 (from https://www.piwheels.org/simple/scarcc/)
2024-04-28T21:26:22,579 Skipping link: not a file: https://www.piwheels.org/simple/scarcc/
2024-04-28T21:26:22,580 Skipping link: not a file: https://pypi.org/simple/scarcc/
2024-04-28T21:26:22,608 Given no hashes to check 1 links for project 'scarcc': discarding no candidates
2024-04-28T21:26:22,635 Collecting scarcc==0.1.7
2024-04-28T21:26:22,638   Created temporary directory: /tmp/pip-unpack-xw20p96i
2024-04-28T21:26:22,894   Downloading scarcc-0.1.7.tar.gz (52 kB)
2024-04-28T21:26:23,077   Added scarcc==0.1.7 from https://files.pythonhosted.org/packages/cb/ec/b22637ece98a09f869d94f8c33e13f37d6536095e7bc2f184b062ddcc9b1/scarcc-0.1.7.tar.gz to build tracker '/tmp/pip-build-tracker-cquypwv9'
2024-04-28T21:26:23,082   Created temporary directory: /tmp/pip-build-env-ampmedb8
2024-04-28T21:26:23,087   Installing build dependencies: started
2024-04-28T21:26:23,088   Running command pip subprocess to install build dependencies
2024-04-28T21:26:24,329   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-04-28T21:26:24,885   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-04-28T21:26:26,466   Collecting setuptools>=40.6.0
2024-04-28T21:26:26,480     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB)
2024-04-28T21:26:26,713   Collecting wheel
2024-04-28T21:26:26,727     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-04-28T21:26:29,357   Installing collected packages: wheel, setuptools
2024-04-28T21:26:29,589     Creating /tmp/pip-build-env-ampmedb8/overlay/local/bin
2024-04-28T21:26:29,591     changing mode of /tmp/pip-build-env-ampmedb8/overlay/local/bin/wheel to 755
2024-04-28T21:26:32,593   Successfully installed setuptools-69.5.1 wheel-0.43.0
2024-04-28T21:26:33,182   Installing build dependencies: finished with status 'done'
2024-04-28T21:26:33,185   Getting requirements to build wheel: started
2024-04-28T21:26:33,186   Running command Getting requirements to build wheel
2024-04-28T21:26:33,755   running egg_info
2024-04-28T21:26:33,759   writing src/scarcc.egg-info/PKG-INFO
2024-04-28T21:26:33,763   writing dependency_links to src/scarcc.egg-info/dependency_links.txt
2024-04-28T21:26:33,765   writing requirements to src/scarcc.egg-info/requires.txt
2024-04-28T21:26:33,767   writing top-level names to src/scarcc.egg-info/top_level.txt
2024-04-28T21:26:34,007   reading manifest file 'src/scarcc.egg-info/SOURCES.txt'
2024-04-28T21:26:34,009   adding license file 'LICENSE'
2024-04-28T21:26:34,013   writing manifest file 'src/scarcc.egg-info/SOURCES.txt'
2024-04-28T21:26:34,098   Getting requirements to build wheel: finished with status 'done'
2024-04-28T21:26:34,107   Created temporary directory: /tmp/pip-modern-metadata-3ocl3cmg
2024-04-28T21:26:34,109   Preparing metadata (pyproject.toml): started
2024-04-28T21:26:34,111   Running command Preparing metadata (pyproject.toml)
2024-04-28T21:26:34,684   running dist_info
2024-04-28T21:26:34,689   creating /tmp/pip-modern-metadata-3ocl3cmg/scarcc.egg-info
2024-04-28T21:26:34,693   writing /tmp/pip-modern-metadata-3ocl3cmg/scarcc.egg-info/PKG-INFO
2024-04-28T21:26:34,697   writing dependency_links to /tmp/pip-modern-metadata-3ocl3cmg/scarcc.egg-info/dependency_links.txt
2024-04-28T21:26:34,699   writing requirements to /tmp/pip-modern-metadata-3ocl3cmg/scarcc.egg-info/requires.txt
2024-04-28T21:26:34,700   writing top-level names to /tmp/pip-modern-metadata-3ocl3cmg/scarcc.egg-info/top_level.txt
2024-04-28T21:26:34,702   writing manifest file '/tmp/pip-modern-metadata-3ocl3cmg/scarcc.egg-info/SOURCES.txt'
2024-04-28T21:26:34,730   reading manifest file '/tmp/pip-modern-metadata-3ocl3cmg/scarcc.egg-info/SOURCES.txt'
2024-04-28T21:26:34,732   adding license file 'LICENSE'
2024-04-28T21:26:34,735   writing manifest file '/tmp/pip-modern-metadata-3ocl3cmg/scarcc.egg-info/SOURCES.txt'
2024-04-28T21:26:34,736   creating '/tmp/pip-modern-metadata-3ocl3cmg/scarcc-0.1.7.dist-info'
2024-04-28T21:26:34,909   Preparing metadata (pyproject.toml): finished with status 'done'
2024-04-28T21:26:34,913   Source in /tmp/pip-wheel-l9qywcvz/scarcc_4a06eaaf46894cb8b32080fdfe5d137d has version 0.1.7, which satisfies requirement scarcc==0.1.7 from https://files.pythonhosted.org/packages/cb/ec/b22637ece98a09f869d94f8c33e13f37d6536095e7bc2f184b062ddcc9b1/scarcc-0.1.7.tar.gz
2024-04-28T21:26:34,914   Removed scarcc==0.1.7 from https://files.pythonhosted.org/packages/cb/ec/b22637ece98a09f869d94f8c33e13f37d6536095e7bc2f184b062ddcc9b1/scarcc-0.1.7.tar.gz from build tracker '/tmp/pip-build-tracker-cquypwv9'
2024-04-28T21:26:34,919 Created temporary directory: /tmp/pip-unpack-7t8c9gw3
2024-04-28T21:26:34,920 Created temporary directory: /tmp/pip-unpack-80p6ov6t
2024-04-28T21:26:34,934 Building wheels for collected packages: scarcc
2024-04-28T21:26:34,938   Created temporary directory: /tmp/pip-wheel-y9j8rgp7
2024-04-28T21:26:34,939   Destination directory: /tmp/pip-wheel-y9j8rgp7
2024-04-28T21:26:34,941   Building wheel for scarcc (pyproject.toml): started
2024-04-28T21:26:34,943   Running command Building wheel for scarcc (pyproject.toml)
2024-04-28T21:26:35,520   running bdist_wheel
2024-04-28T21:26:35,561   running build
2024-04-28T21:26:35,562   running build_py
2024-04-28T21:26:35,569   creating build
2024-04-28T21:26:35,570   creating build/lib
2024-04-28T21:26:35,571   creating build/lib/scarcc
2024-04-28T21:26:35,572   copying src/scarcc/__init__.py -> build/lib/scarcc
2024-04-28T21:26:35,575   creating build/lib/scarcc/preparation
2024-04-28T21:26:35,576   copying src/scarcc/preparation/find_directory.py -> build/lib/scarcc/preparation
2024-04-28T21:26:35,578   copying src/scarcc/preparation/__init__.py -> build/lib/scarcc/preparation
2024-04-28T21:26:35,581   creating build/lib/scarcc/sim_engine
2024-04-28T21:26:35,582   copying src/scarcc/sim_engine/simulation_workflow.py -> build/lib/scarcc/sim_engine
2024-04-28T21:26:35,584   copying src/scarcc/sim_engine/flux_extraction.py -> build/lib/scarcc/sim_engine
2024-04-28T21:26:35,587   copying src/scarcc/sim_engine/checkerboard_workflow.py -> build/lib/scarcc/sim_engine
2024-04-28T21:26:35,589   copying src/scarcc/sim_engine/output.py -> build/lib/scarcc/sim_engine
2024-04-28T21:26:35,591   copying src/scarcc/sim_engine/simulation_configuration.py -> build/lib/scarcc/sim_engine
2024-04-28T21:26:35,594   copying src/scarcc/sim_engine/__init__.py -> build/lib/scarcc/sim_engine
2024-04-28T21:26:35,595   creating build/lib/scarcc/utils
2024-04-28T21:26:35,597   copying src/scarcc/utils/__init__.py -> build/lib/scarcc/utils
2024-04-28T21:26:35,598   copying src/scarcc/utils/util.py -> build/lib/scarcc/utils
2024-04-28T21:26:35,601   creating build/lib/scarcc/data_analysis
2024-04-28T21:26:35,602   copying src/scarcc/data_analysis/__init__.py -> build/lib/scarcc/data_analysis
2024-04-28T21:26:35,604   creating build/lib/scarcc/preparation/perturbation
2024-04-28T21:26:35,605   copying src/scarcc/preparation/perturbation/__init__.py -> build/lib/scarcc/preparation/perturbation
2024-04-28T21:26:35,607   creating build/lib/scarcc/preparation/target_gene
2024-04-28T21:26:35,608   copying src/scarcc/preparation/target_gene/gene_format_handler.py -> build/lib/scarcc/preparation/target_gene
2024-04-28T21:26:35,610   copying src/scarcc/preparation/target_gene/__init__.py -> build/lib/scarcc/preparation/target_gene
2024-04-28T21:26:35,612   creating build/lib/scarcc/preparation/metabolic_model
2024-04-28T21:26:35,613   copying src/scarcc/preparation/metabolic_model/basic_model.py -> build/lib/scarcc/preparation/metabolic_model
2024-04-28T21:26:35,615   copying src/scarcc/preparation/metabolic_model/__init__.py -> build/lib/scarcc/preparation/metabolic_model
2024-04-28T21:26:35,618   creating build/lib/scarcc/preparation/perturbation/alpha_finder
2024-04-28T21:26:35,619   copying src/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder
2024-04-28T21:26:35,621   copying src/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder
2024-04-28T21:26:35,624   copying src/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/lib/scarcc/preparation/perturbation/alpha_finder
2024-04-28T21:26:35,626   copying src/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/lib/scarcc/preparation/perturbation/alpha_finder
2024-04-28T21:26:35,629   copying src/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/lib/scarcc/preparation/perturbation/alpha_finder
2024-04-28T21:26:35,631   creating build/lib/scarcc/preparation/perturbation/function
2024-04-28T21:26:35,632   copying src/scarcc/preparation/perturbation/function/iter_species.py -> build/lib/scarcc/preparation/perturbation/function
2024-04-28T21:26:35,634   copying src/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/lib/scarcc/preparation/perturbation/function
2024-04-28T21:26:35,636   copying src/scarcc/preparation/perturbation/function/__init__.py -> build/lib/scarcc/preparation/perturbation/function
2024-04-28T21:26:35,639   creating build/lib/scarcc/preparation/metabolic_model/core
2024-04-28T21:26:35,640   copying src/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/lib/scarcc/preparation/metabolic_model/core
2024-04-28T21:26:35,642   copying src/scarcc/preparation/metabolic_model/core/medium.py -> build/lib/scarcc/preparation/metabolic_model/core
2024-04-28T21:26:35,644   copying src/scarcc/preparation/metabolic_model/core/component.py -> build/lib/scarcc/preparation/metabolic_model/core
2024-04-28T21:26:35,646   copying src/scarcc/preparation/metabolic_model/core/__init__.py -> build/lib/scarcc/preparation/metabolic_model/core
2024-04-28T21:26:35,649   creating build/lib/scarcc/data_analysis/growth
2024-04-28T21:26:35,650   copying src/scarcc/data_analysis/growth/growth_summary.py -> build/lib/scarcc/data_analysis/growth
2024-04-28T21:26:35,653   copying src/scarcc/data_analysis/growth/_pathway_summary.py -> build/lib/scarcc/data_analysis/growth
2024-04-28T21:26:35,655   copying src/scarcc/data_analysis/growth/growth_rate.py -> build/lib/scarcc/data_analysis/growth
2024-04-28T21:26:35,657   copying src/scarcc/data_analysis/growth/__init__.py -> build/lib/scarcc/data_analysis/growth
2024-04-28T21:26:35,658   copying src/scarcc/data_analysis/growth/plot_growth_curve.py -> build/lib/scarcc/data_analysis/growth
2024-04-28T21:26:35,660   creating build/lib/scarcc/data_analysis/flux
2024-04-28T21:26:35,661   copying src/scarcc/data_analysis/flux/flux_snapshot.py -> build/lib/scarcc/data_analysis/flux
2024-04-28T21:26:35,663   copying src/scarcc/data_analysis/flux/flux_correction.py -> build/lib/scarcc/data_analysis/flux
2024-04-28T21:26:35,665   copying src/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/lib/scarcc/data_analysis/flux
2024-04-28T21:26:35,667   copying src/scarcc/data_analysis/flux/carbon_allocation.py -> build/lib/scarcc/data_analysis/flux
2024-04-28T21:26:35,669   copying src/scarcc/data_analysis/flux/__init__.py -> build/lib/scarcc/data_analysis/flux
2024-04-28T21:26:35,671   creating build/lib/scarcc/data_analysis/plot
2024-04-28T21:26:35,672   copying src/scarcc/data_analysis/plot/scatter.py -> build/lib/scarcc/data_analysis/plot
2024-04-28T21:26:35,674   copying src/scarcc/data_analysis/plot/heatmap.py -> build/lib/scarcc/data_analysis/plot
2024-04-28T21:26:35,676   copying src/scarcc/data_analysis/plot/kde.py -> build/lib/scarcc/data_analysis/plot
2024-04-28T21:26:35,678   copying src/scarcc/data_analysis/plot/legend.py -> build/lib/scarcc/data_analysis/plot
2024-04-28T21:26:35,680   copying src/scarcc/data_analysis/plot/__init__.py -> build/lib/scarcc/data_analysis/plot
2024-04-28T21:26:35,682   creating build/lib/scarcc/data_analysis/drug_combination_response
2024-04-28T21:26:35,683   copying src/scarcc/data_analysis/drug_combination_response/classification.py -> build/lib/scarcc/data_analysis/drug_combination_response
2024-04-28T21:26:35,685   copying src/scarcc/data_analysis/drug_combination_response/__init__.py -> build/lib/scarcc/data_analysis/drug_combination_response
2024-04-28T21:26:35,710   installing to build/bdist.linux-armv7l/wheel
2024-04-28T21:26:35,711   running install
2024-04-28T21:26:35,734   running install_lib
2024-04-28T21:26:35,741   creating build/bdist.linux-armv7l
2024-04-28T21:26:35,741   creating build/bdist.linux-armv7l/wheel
2024-04-28T21:26:35,743   creating build/bdist.linux-armv7l/wheel/scarcc
2024-04-28T21:26:35,744   creating build/bdist.linux-armv7l/wheel/scarcc/preparation
2024-04-28T21:26:35,746   creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation
2024-04-28T21:26:35,747   creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder
2024-04-28T21:26:35,748   copying build/lib/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder
2024-04-28T21:26:35,751   copying build/lib/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder
2024-04-28T21:26:35,754   copying build/lib/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder
2024-04-28T21:26:35,757   copying build/lib/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder
2024-04-28T21:26:35,759   copying build/lib/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder
2024-04-28T21:26:35,761   creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function
2024-04-28T21:26:35,762   copying build/lib/scarcc/preparation/perturbation/function/iter_species.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function
2024-04-28T21:26:35,764   copying build/lib/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function
2024-04-28T21:26:35,767   copying build/lib/scarcc/preparation/perturbation/function/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function
2024-04-28T21:26:35,769   copying build/lib/scarcc/preparation/perturbation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation
2024-04-28T21:26:35,770   copying build/lib/scarcc/preparation/find_directory.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation
2024-04-28T21:26:35,773   creating build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene
2024-04-28T21:26:35,773   copying build/lib/scarcc/preparation/target_gene/gene_format_handler.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene
2024-04-28T21:26:35,776   copying build/lib/scarcc/preparation/target_gene/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene
2024-04-28T21:26:35,777   copying build/lib/scarcc/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation
2024-04-28T21:26:35,780   creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model
2024-04-28T21:26:35,781   copying build/lib/scarcc/preparation/metabolic_model/basic_model.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model
2024-04-28T21:26:35,784   creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core
2024-04-28T21:26:35,784   copying build/lib/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core
2024-04-28T21:26:35,786   copying build/lib/scarcc/preparation/metabolic_model/core/medium.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core
2024-04-28T21:26:35,788   copying build/lib/scarcc/preparation/metabolic_model/core/component.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core
2024-04-28T21:26:35,791   copying build/lib/scarcc/preparation/metabolic_model/core/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core
2024-04-28T21:26:35,793   copying build/lib/scarcc/preparation/metabolic_model/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model
2024-04-28T21:26:35,795   creating build/bdist.linux-armv7l/wheel/scarcc/sim_engine
2024-04-28T21:26:35,796   copying build/lib/scarcc/sim_engine/simulation_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine
2024-04-28T21:26:35,798   copying build/lib/scarcc/sim_engine/flux_extraction.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine
2024-04-28T21:26:35,801   copying build/lib/scarcc/sim_engine/checkerboard_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine
2024-04-28T21:26:35,803   copying build/lib/scarcc/sim_engine/output.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine
2024-04-28T21:26:35,811   copying build/lib/scarcc/sim_engine/simulation_configuration.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine
2024-04-28T21:26:35,813   copying build/lib/scarcc/sim_engine/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine
2024-04-28T21:26:35,815   creating build/bdist.linux-armv7l/wheel/scarcc/utils
2024-04-28T21:26:35,816   copying build/lib/scarcc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/utils
2024-04-28T21:26:35,818   copying build/lib/scarcc/utils/util.py -> build/bdist.linux-armv7l/wheel/scarcc/utils
2024-04-28T21:26:35,820   copying build/lib/scarcc/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc
2024-04-28T21:26:35,822   creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis
2024-04-28T21:26:35,824   creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth
2024-04-28T21:26:35,825   copying build/lib/scarcc/data_analysis/growth/growth_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth
2024-04-28T21:26:35,827   copying build/lib/scarcc/data_analysis/growth/_pathway_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth
2024-04-28T21:26:35,830   copying build/lib/scarcc/data_analysis/growth/growth_rate.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth
2024-04-28T21:26:35,832   copying build/lib/scarcc/data_analysis/growth/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth
2024-04-28T21:26:35,833   copying build/lib/scarcc/data_analysis/growth/plot_growth_curve.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth
2024-04-28T21:26:35,835   creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux
2024-04-28T21:26:35,836   copying build/lib/scarcc/data_analysis/flux/flux_snapshot.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux
2024-04-28T21:26:35,838   copying build/lib/scarcc/data_analysis/flux/flux_correction.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux
2024-04-28T21:26:35,840   copying build/lib/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux
2024-04-28T21:26:35,842   copying build/lib/scarcc/data_analysis/flux/carbon_allocation.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux
2024-04-28T21:26:35,844   copying build/lib/scarcc/data_analysis/flux/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux
2024-04-28T21:26:35,846   creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot
2024-04-28T21:26:35,847   copying build/lib/scarcc/data_analysis/plot/scatter.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot
2024-04-28T21:26:35,849   copying build/lib/scarcc/data_analysis/plot/heatmap.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot
2024-04-28T21:26:35,851   copying build/lib/scarcc/data_analysis/plot/kde.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot
2024-04-28T21:26:35,852   copying build/lib/scarcc/data_analysis/plot/legend.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot
2024-04-28T21:26:35,854   copying build/lib/scarcc/data_analysis/plot/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot
2024-04-28T21:26:35,856   creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response
2024-04-28T21:26:35,857   copying build/lib/scarcc/data_analysis/drug_combination_response/classification.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response
2024-04-28T21:26:35,859   copying build/lib/scarcc/data_analysis/drug_combination_response/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response
2024-04-28T21:26:35,860   copying build/lib/scarcc/data_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis
2024-04-28T21:26:35,862   running install_egg_info
2024-04-28T21:26:35,877   running egg_info
2024-04-28T21:26:35,881   writing src/scarcc.egg-info/PKG-INFO
2024-04-28T21:26:35,884   writing dependency_links to src/scarcc.egg-info/dependency_links.txt
2024-04-28T21:26:35,886   writing requirements to src/scarcc.egg-info/requires.txt
2024-04-28T21:26:35,887   writing top-level names to src/scarcc.egg-info/top_level.txt
2024-04-28T21:26:35,905   reading manifest file 'src/scarcc.egg-info/SOURCES.txt'
2024-04-28T21:26:35,908   adding license file 'LICENSE'
2024-04-28T21:26:35,912   writing manifest file 'src/scarcc.egg-info/SOURCES.txt'
2024-04-28T21:26:35,913   Copying src/scarcc.egg-info to build/bdist.linux-armv7l/wheel/scarcc-0.1.7-py3.11.egg-info
2024-04-28T21:26:35,923   running install_scripts
2024-04-28T21:26:35,937   creating build/bdist.linux-armv7l/wheel/scarcc-0.1.7.dist-info/WHEEL
2024-04-28T21:26:35,939   creating '/tmp/pip-wheel-y9j8rgp7/.tmp-yy7jrgt7/scarcc-0.1.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-04-28T21:26:35,941   adding 'scarcc/__init__.py'
2024-04-28T21:26:35,943   adding 'scarcc/data_analysis/__init__.py'
2024-04-28T21:26:35,945   adding 'scarcc/data_analysis/drug_combination_response/__init__.py'
2024-04-28T21:26:35,946   adding 'scarcc/data_analysis/drug_combination_response/classification.py'
2024-04-28T21:26:35,947   adding 'scarcc/data_analysis/flux/__init__.py'
2024-04-28T21:26:35,949   adding 'scarcc/data_analysis/flux/carbon_allocation.py'
2024-04-28T21:26:35,950   adding 'scarcc/data_analysis/flux/flux_correction.py'
2024-04-28T21:26:35,952   adding 'scarcc/data_analysis/flux/flux_ratio_analysis.py'
2024-04-28T21:26:35,953   adding 'scarcc/data_analysis/flux/flux_snapshot.py'
2024-04-28T21:26:35,955   adding 'scarcc/data_analysis/growth/__init__.py'
2024-04-28T21:26:35,956   adding 'scarcc/data_analysis/growth/_pathway_summary.py'
2024-04-28T21:26:35,958   adding 'scarcc/data_analysis/growth/growth_rate.py'
2024-04-28T21:26:35,959   adding 'scarcc/data_analysis/growth/growth_summary.py'
2024-04-28T21:26:35,961   adding 'scarcc/data_analysis/growth/plot_growth_curve.py'
2024-04-28T21:26:35,962   adding 'scarcc/data_analysis/plot/__init__.py'
2024-04-28T21:26:35,963   adding 'scarcc/data_analysis/plot/heatmap.py'
2024-04-28T21:26:35,965   adding 'scarcc/data_analysis/plot/kde.py'
2024-04-28T21:26:35,966   adding 'scarcc/data_analysis/plot/legend.py'
2024-04-28T21:26:35,967   adding 'scarcc/data_analysis/plot/scatter.py'
2024-04-28T21:26:35,969   adding 'scarcc/preparation/__init__.py'
2024-04-28T21:26:35,970   adding 'scarcc/preparation/find_directory.py'
2024-04-28T21:26:35,972   adding 'scarcc/preparation/metabolic_model/__init__.py'
2024-04-28T21:26:35,974   adding 'scarcc/preparation/metabolic_model/basic_model.py'
2024-04-28T21:26:35,975   adding 'scarcc/preparation/metabolic_model/core/__init__.py'
2024-04-28T21:26:35,977   adding 'scarcc/preparation/metabolic_model/core/component.py'
2024-04-28T21:26:35,978   adding 'scarcc/preparation/metabolic_model/core/flux_weighting.py'
2024-04-28T21:26:35,979   adding 'scarcc/preparation/metabolic_model/core/medium.py'
2024-04-28T21:26:35,981   adding 'scarcc/preparation/perturbation/__init__.py'
2024-04-28T21:26:35,983   adding 'scarcc/preparation/perturbation/alpha_finder/__init__.py'
2024-04-28T21:26:35,984   adding 'scarcc/preparation/perturbation/alpha_finder/alpha_finder.py'
2024-04-28T21:26:35,986   adding 'scarcc/preparation/perturbation/alpha_finder/checkerboard.py'
2024-04-28T21:26:35,989   adding 'scarcc/preparation/perturbation/alpha_finder/coculture.py'
2024-04-28T21:26:35,991   adding 'scarcc/preparation/perturbation/alpha_finder/monoculture.py'
2024-04-28T21:26:35,993   adding 'scarcc/preparation/perturbation/function/__init__.py'
2024-04-28T21:26:35,994   adding 'scarcc/preparation/perturbation/function/iter_species.py'
2024-04-28T21:26:35,996   adding 'scarcc/preparation/perturbation/function/stoichiometry_scaling.py'
2024-04-28T21:26:35,997   adding 'scarcc/preparation/target_gene/__init__.py'
2024-04-28T21:26:35,999   adding 'scarcc/preparation/target_gene/gene_format_handler.py'
2024-04-28T21:26:36,001   adding 'scarcc/sim_engine/__init__.py'
2024-04-28T21:26:36,002   adding 'scarcc/sim_engine/checkerboard_workflow.py'
2024-04-28T21:26:36,004   adding 'scarcc/sim_engine/flux_extraction.py'
2024-04-28T21:26:36,006   adding 'scarcc/sim_engine/output.py'
2024-04-28T21:26:36,007   adding 'scarcc/sim_engine/simulation_configuration.py'
2024-04-28T21:26:36,009   adding 'scarcc/sim_engine/simulation_workflow.py'
2024-04-28T21:26:36,011   adding 'scarcc/utils/__init__.py'
2024-04-28T21:26:36,012   adding 'scarcc/utils/util.py'
2024-04-28T21:26:36,014   adding 'scarcc-0.1.7.dist-info/LICENSE'
2024-04-28T21:26:36,016   adding 'scarcc-0.1.7.dist-info/METADATA'
2024-04-28T21:26:36,017   adding 'scarcc-0.1.7.dist-info/WHEEL'
2024-04-28T21:26:36,018   adding 'scarcc-0.1.7.dist-info/top_level.txt'
2024-04-28T21:26:36,019   adding 'scarcc-0.1.7.dist-info/RECORD'
2024-04-28T21:26:36,022   removing build/bdist.linux-armv7l/wheel
2024-04-28T21:26:36,135   Building wheel for scarcc (pyproject.toml): finished with status 'done'
2024-04-28T21:26:36,141   Created wheel for scarcc: filename=scarcc-0.1.7-py3-none-any.whl size=64191 sha256=0efdcd25424d4120fec7e0c9702982297195f127ae4d9a673c8cee9b2dddc28e
2024-04-28T21:26:36,142   Stored in directory: /tmp/pip-ephem-wheel-cache-90iu4xrl/wheels/45/9c/dd/a3d741aef60f41b58e2c25717a53a597c587002e8a50916838
2024-04-28T21:26:36,154 Successfully built scarcc
2024-04-28T21:26:36,159 Removed build tracker: '/tmp/pip-build-tracker-cquypwv9'