2024-04-29T01:24:19,055 Created temporary directory: /tmp/pip-build-tracker-on5abu_0 2024-04-29T01:24:19,059 Initialized build tracking at /tmp/pip-build-tracker-on5abu_0 2024-04-29T01:24:19,059 Created build tracker: /tmp/pip-build-tracker-on5abu_0 2024-04-29T01:24:19,060 Entered build tracker: /tmp/pip-build-tracker-on5abu_0 2024-04-29T01:24:19,061 Created temporary directory: /tmp/pip-wheel-kxid57ax 2024-04-29T01:24:19,072 Created temporary directory: /tmp/pip-ephem-wheel-cache-nd3nxnm4 2024-04-29T01:24:19,136 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-29T01:24:19,151 2 location(s) to search for versions of polyply: 2024-04-29T01:24:19,151 * https://pypi.org/simple/polyply/ 2024-04-29T01:24:19,151 * https://www.piwheels.org/simple/polyply/ 2024-04-29T01:24:19,152 Fetching project page and analyzing links: https://pypi.org/simple/polyply/ 2024-04-29T01:24:19,153 Getting page https://pypi.org/simple/polyply/ 2024-04-29T01:24:19,157 Found index url https://pypi.org/simple/ 2024-04-29T01:24:19,275 Fetched page https://pypi.org/simple/polyply/ as application/vnd.pypi.simple.v1+json 2024-04-29T01:24:19,290 Found link https://files.pythonhosted.org/packages/27/d1/df68703f3e73c235e05823b59a5271657847bcccdd392075b1b1da4aa701/polyply-0.0.1.tar.gz (from https://pypi.org/simple/polyply/), version: 0.0.1 2024-04-29T01:24:19,291 Found link https://files.pythonhosted.org/packages/3f/35/d6ad36f78a4d71aac92d47e2831c4b3b339c6801c6dac6c3334a73a164c2/polyply-1.0.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.0.0 2024-04-29T01:24:19,292 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/61/c4/9393a7f82554a6c494f4c09776d48e4b83650cb2065930bcf63f0a04b3f2/polyply-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2024-04-29T01:24:19,293 Found link https://files.pythonhosted.org/packages/07/50/e2bedb4e92e97d38a55c48bb46ccdb71c31980679e7c62a756daf8ac0556/polyply-1.1.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.1.0 2024-04-29T01:24:19,293 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/b6/73/dae457005e36caeed515e0ddd6575f97b7b7ef0fa10ea58080b214f28bcb/polyply-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2024-04-29T01:24:19,294 Found link https://files.pythonhosted.org/packages/18/8e/2f4345b5870703a292c4a6935f371b133bf4296fb0c27277fc2b0e82b84a/polyply-1.2.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.2.0 2024-04-29T01:24:19,295 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/30/09/9a2dd9e4a932367c34dab96daa3358f525caf79281b782cc999c5d23e739/polyply-1.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2024-04-29T01:24:19,295 Found link https://files.pythonhosted.org/packages/44/2e/5a1f0589f61f2adf682da196f365578969be49e70bb5c462b804378574b8/polyply-1.2.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.2.1 2024-04-29T01:24:19,296 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/8b/5a/54052dbde396df09dd9d81aeb3c5e1b3873d7a81e387f4c45cc3e9a9aaf7/polyply-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2024-04-29T01:24:19,296 Found link https://files.pythonhosted.org/packages/4a/e1/68556867ea156a9deeceb21d415a7279beb91d865d2645f4820fa2ec18cf/polyply-1.3.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.3.0 2024-04-29T01:24:19,297 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/5b/42/27a59dec4af56f87c3f93920f6021fb31bb9885d2bc7b3e0f9efe883db01/polyply-1.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2024-04-29T01:24:19,298 Found link https://files.pythonhosted.org/packages/08/9b/e76f6659ecf63a5d1f11951ce10b248e4c13669aa8ca03fa9e766f21043b/polyply-1.3.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.3.1 2024-04-29T01:24:19,298 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/0f/cb/16b130082c96795791589934b925937530f9c909c544bf295069135003ca/polyply-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2024-04-29T01:24:19,299 Found link https://files.pythonhosted.org/packages/72/da/305294dabd9e3a6123018e8adabe7312ea474b0bbf45eb38c30ac96dcdd4/polyply-1.4.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.4.0 2024-04-29T01:24:19,300 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/f0/d9/5bf083840a5ca0f136f65a78f0cc725ef04c8c887c445d7814c97318b074/polyply-1.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2024-04-29T01:24:19,300 Found link https://files.pythonhosted.org/packages/ed/5f/c96ca2049310872af23fc84d0e686211d543915676f4f07fa6107956115f/polyply-1.4.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.4.1 2024-04-29T01:24:19,301 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/1b/a1/7549f3fd81c6358c73779c9c25c331d786ca17bda7269ed3d7e6654e4432/polyply-1.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2024-04-29T01:24:19,302 Found link https://files.pythonhosted.org/packages/6d/c1/a462e435cf2ddb6f05e485f7ed071591026c4c7f36b9f6866252e971aad7/polyply-1.5.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.5.0 2024-04-29T01:24:19,302 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/03/79/23b77e895fa5460790fe5f9ce233a6c7d1ee4d89a3ea0f97122e6a3c34f5/polyply-1.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2024-04-29T01:24:19,303 Found link https://files.pythonhosted.org/packages/c6/ec/80015cfd5ba57dfd4f71cda3cd78eaceb08d657c572e015644590e7d7c0d/polyply-1.6.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.6.0 2024-04-29T01:24:19,304 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/e4/af/4b0ecd250e21ebcc25b70cc7bd61c9103952831f8d45366b40aed4fd7a42/polyply-1.6.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2024-04-29T01:24:19,304 Found link https://files.pythonhosted.org/packages/af/d6/fa0cd035f62121f0257c1c7a8c12d5ab2db6bea0657a9d0a97c248e25d89/polyply-1.6.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.6.1 2024-04-29T01:24:19,305 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/6a/d8/3cb2ff99c9171204e1af885991245791a75b7911706e4c82a40462407ef7/polyply-1.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2024-04-29T01:24:19,306 Found link https://files.pythonhosted.org/packages/16/52/da75ed492dcb85008d81e9d06106e49b42a22da69c9200f4074be378b59c/polyply-1.7.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.7.0 2024-04-29T01:24:19,307 Fetching project page and analyzing links: https://www.piwheels.org/simple/polyply/ 2024-04-29T01:24:19,307 Getting page https://www.piwheels.org/simple/polyply/ 2024-04-29T01:24:19,310 Found index url https://www.piwheels.org/simple/ 2024-04-29T01:24:19,546 Fetched page https://www.piwheels.org/simple/polyply/ as text/html 2024-04-29T01:24:19,557 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.6.1-py2.py3-none-any.whl#sha256=5fa2fa4b9f391541e92e348c4ef7bbe20c673f379f2346ec1952688e65360680 (from https://www.piwheels.org/simple/polyply/) 2024-04-29T01:24:19,558 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.6.0-py2.py3-none-any.whl#sha256=5e2d380ed606af2497a87520f02c8dde400da5f2a9516f6dbdaccc81acee3213 (from https://www.piwheels.org/simple/polyply/) 2024-04-29T01:24:19,559 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.5.0-py2.py3-none-any.whl#sha256=ba6608f25a60332e2b282596b80c03684076ce91cec8ee0b79322bac515bb65c (from https://www.piwheels.org/simple/polyply/) 2024-04-29T01:24:19,559 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.4.1-py2.py3-none-any.whl#sha256=90886eb9dd59380a2544798fec37eb01f98a13be0438dc8a2437fd98770abb8f (from https://www.piwheels.org/simple/polyply/) 2024-04-29T01:24:19,560 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.4.0-py2.py3-none-any.whl#sha256=ff46e65cc574f03b487c291c2f039559c7ae9915d832e65d1c2f5fa064c7c4f7 (from https://www.piwheels.org/simple/polyply/) 2024-04-29T01:24:19,561 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.3.1-py2.py3-none-any.whl#sha256=b0b3e19fb070225282deb01f6a7ecb6ee818e5ea427d82671643c3cdfe77d223 (from https://www.piwheels.org/simple/polyply/) 2024-04-29T01:24:19,561 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.3.0-py2.py3-none-any.whl#sha256=6ba24bf0e5816a4bbca620557f3da0c72223845d343dc2aef98b62c4d82dd3bb (from https://www.piwheels.org/simple/polyply/) 2024-04-29T01:24:19,562 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.1-py2.py3-none-any.whl#sha256=477478cf7f4d673782ed4e85fc97d32eaf0f5c1d5aa5af96d33ef496c1325007 (from https://www.piwheels.org/simple/polyply/) 2024-04-29T01:24:19,562 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.0-py2.py3-none-any.whl#sha256=672ceb8c03418bf79a0c31ab912adb5e0767df776a7d5d867a516ea0652e6362 (from https://www.piwheels.org/simple/polyply/) 2024-04-29T01:24:19,563 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.1.0-py2.py3-none-any.whl#sha256=756c436ae0321f2499390c6bc2e19a194bb59f9a49a3a4d78e37a364a0ddcb6f (from https://www.piwheels.org/simple/polyply/) 2024-04-29T01:24:19,563 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.0.0-py2.py3-none-any.whl#sha256=e44f0272c9e93e8e46bed997db28dd0205d709cebd40090747e2758358abdb8c (from https://www.piwheels.org/simple/polyply/) 2024-04-29T01:24:19,564 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-0.0.1-py2.py3-none-any.whl#sha256=165e22dfd4680f03fe8b6a49a8d3f38918049d263c57c0e82b5fddb4bc8b294b (from https://www.piwheels.org/simple/polyply/) 2024-04-29T01:24:19,564 Skipping link: not a file: https://www.piwheels.org/simple/polyply/ 2024-04-29T01:24:19,565 Skipping link: not a file: https://pypi.org/simple/polyply/ 2024-04-29T01:24:19,608 Given no hashes to check 1 links for project 'polyply': discarding no candidates 2024-04-29T01:24:19,644 Collecting polyply==1.7.0 2024-04-29T01:24:19,649 Created temporary directory: /tmp/pip-unpack-dnpxcjox 2024-04-29T01:24:19,748 Downloading polyply-1.7.0.tar.gz (614 kB) 2024-04-29T01:24:21,623 Added polyply==1.7.0 from https://files.pythonhosted.org/packages/16/52/da75ed492dcb85008d81e9d06106e49b42a22da69c9200f4074be378b59c/polyply-1.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-on5abu_0' 2024-04-29T01:24:21,635 Created temporary directory: /tmp/pip-build-env-qnb9r6m7 2024-04-29T01:24:21,658 Installing build dependencies: started 2024-04-29T01:24:21,661 Running command pip subprocess to install build dependencies 2024-04-29T01:24:25,132 Using pip 24.0 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7) 2024-04-29T01:24:26,333 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-29T01:24:26,813 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/7d/cd/d7460c9a869b16c3dd4e1e403cce337df165368c71d6af229a74699622ce/wheel-0.43.0-py3-none-any.whl (from https://pypi.org/simple/wheel/) 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https://www.piwheels.org/simple/setuptools/setuptools-69.1.0-py3-none-any.whl#sha256=0ae54af345d2e69f9bab0d7ef302ead7b2533a361619db78e98c952a35a0165f (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-04-29T01:24:30,647 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl#sha256=55a27b1207ffd06fc72552920c9ea1ce81541b8b651ae406bf3d3bb153bf316f (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-04-29T01:24:30,650 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-69.0.2-py3-none-any.whl#sha256=3bc5ad43195a9eb1e8c3a2ebab28a9c3202db9d1f8e59b29971aa35abb3e0bfc (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-04-29T01:24:30,653 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-69.0.1-py3-none-any.whl#sha256=9c4d043933771b03b0e86846a984b24281a40689d433f11691455b8bce7be14a (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-04-29T01:24:30,657 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-69.0.0-py3-none-any.whl#sha256=7a44b57685847980bb37b08c098242577e0acb1a941ae1e01b6b42db9c9bc24b (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-04-29T01:24:30,660 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl#sha256=f0df733ea47683814b07dbe33306d759b45214648a1b5f03bdf033f43f653193 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-04-29T01:24:30,663 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-68.2.1-py3-none-any.whl#sha256=de31ae572b523d234b51ec033bb5a28a4636b450819ef59ff98866b0ea1283d5 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-04-29T01:24:30,667 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-68.2.0-py3-none-any.whl#sha256=21c44bd2b10d2e118de5c29f18cfc80305dcc5587cef781523ae9e08376d222a (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-04-29T01:24:30,670 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-68.1.2-py3-none-any.whl#sha256=9e076b8e4f5535e0e67305a15e9eb418006751b9bf0bb8d0a367d09ad0adf3a1 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-04-29T01:24:30,674 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-68.1.0-py3-none-any.whl#sha256=0637a8df7f9d79ffffa7010fdd3db5ca70836acda6994af5f7edb9524838aa23 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2024-04-29T01:24:32,375 Collecting setuptools>=30.3.0 2024-04-29T01:24:32,649 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2024-04-29T01:24:33,272 Collecting pbr 2024-04-29T01:24:33,324 Downloading https://www.piwheels.org/simple/pbr/pbr-6.0.0-py2.py3-none-any.whl (107 kB) 2024-04-29T01:24:33,397 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 107.5/107.5 kB 2.2 MB/s eta 0:00:00 2024-04-29T01:24:38,333 Installing collected packages: wheel, setuptools, pbr 2024-04-29T01:24:38,820 Creating /tmp/pip-build-env-qnb9r6m7/overlay/bin 2024-04-29T01:24:38,824 changing mode of /tmp/pip-build-env-qnb9r6m7/overlay/bin/wheel to 755 2024-04-29T01:24:45,616 changing mode of /tmp/pip-build-env-qnb9r6m7/overlay/bin/pbr to 755 2024-04-29T01:24:45,652 Successfully installed pbr-6.0.0 setuptools-68.0.0 wheel-0.42.0 2024-04-29T01:24:46,609 Installing build dependencies: finished with status 'done' 2024-04-29T01:24:46,634 Getting requirements to build wheel: started 2024-04-29T01:24:46,636 Running command Getting requirements to build wheel 2024-04-29T01:24:48,141 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-04-29T01:24:48,143 !! 2024-04-29T01:24:48,144 ******************************************************************************** 2024-04-29T01:24:48,144 Usage of dash-separated 'description-content-type' will not be supported in future 2024-04-29T01:24:48,145 versions. Please use the underscore name 'description_content_type' instead. 2024-04-29T01:24:48,145 This deprecation is overdue, please update your project and remove deprecated 2024-04-29T01:24:48,146 calls to avoid build errors in the future. 2024-04-29T01:24:48,147 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-04-29T01:24:48,147 ******************************************************************************** 2024-04-29T01:24:48,148 !! 2024-04-29T01:24:48,149 opt = self.warn_dash_deprecation(opt, section) 2024-04-29T01:24:48,149 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-04-29T01:24:48,149 !! 2024-04-29T01:24:48,150 ******************************************************************************** 2024-04-29T01:24:48,151 Usage of dash-separated 'setup-requires' will not be supported in future 2024-04-29T01:24:48,151 versions. Please use the underscore name 'setup_requires' instead. 2024-04-29T01:24:48,152 This deprecation is overdue, please update your project and remove deprecated 2024-04-29T01:24:48,153 calls to avoid build errors in the future. 2024-04-29T01:24:48,154 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-04-29T01:24:48,154 ******************************************************************************** 2024-04-29T01:24:48,155 !! 2024-04-29T01:24:48,155 opt = self.warn_dash_deprecation(opt, section) 2024-04-29T01:24:48,156 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-04-29T01:24:48,156 !! 2024-04-29T01:24:48,157 ******************************************************************************** 2024-04-29T01:24:48,157 Usage of dash-separated 'install-requires' will not be supported in future 2024-04-29T01:24:48,158 versions. Please use the underscore name 'install_requires' instead. 2024-04-29T01:24:48,159 This deprecation is overdue, please update your project and remove deprecated 2024-04-29T01:24:48,159 calls to avoid build errors in the future. 2024-04-29T01:24:48,160 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-04-29T01:24:48,161 ******************************************************************************** 2024-04-29T01:24:48,162 !! 2024-04-29T01:24:48,162 opt = self.warn_dash_deprecation(opt, section) 2024-04-29T01:24:48,163 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-04-29T01:24:48,163 !! 2024-04-29T01:24:48,164 ******************************************************************************** 2024-04-29T01:24:48,164 Usage of dash-separated 'zip-safe' will not be supported in future 2024-04-29T01:24:48,165 versions. Please use the underscore name 'zip_safe' instead. 2024-04-29T01:24:48,165 This deprecation is overdue, please update your project and remove deprecated 2024-04-29T01:24:48,166 calls to avoid build errors in the future. 2024-04-29T01:24:48,167 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-04-29T01:24:48,167 ******************************************************************************** 2024-04-29T01:24:48,169 !! 2024-04-29T01:24:48,169 opt = self.warn_dash_deprecation(opt, section) 2024-04-29T01:24:48,257 Getting requirements to build wheel: finished with status 'done' 2024-04-29T01:24:48,285 Created temporary directory: /tmp/pip-modern-metadata-rygckqma 2024-04-29T01:24:48,292 Preparing metadata (pyproject.toml): started 2024-04-29T01:24:48,294 Running command Preparing metadata (pyproject.toml) 2024-04-29T01:24:50,361 running dist_info 2024-04-29T01:24:50,365 creating /tmp/pip-modern-metadata-rygckqma/polyply.egg-info 2024-04-29T01:24:50,430 writing /tmp/pip-modern-metadata-rygckqma/polyply.egg-info/PKG-INFO 2024-04-29T01:24:50,438 writing dependency_links to /tmp/pip-modern-metadata-rygckqma/polyply.egg-info/dependency_links.txt 2024-04-29T01:24:50,443 writing requirements to /tmp/pip-modern-metadata-rygckqma/polyply.egg-info/requires.txt 2024-04-29T01:24:50,445 writing top-level names to /tmp/pip-modern-metadata-rygckqma/polyply.egg-info/top_level.txt 2024-04-29T01:24:50,448 [pbr] Processing SOURCES.txt 2024-04-29T01:24:50,449 writing manifest file '/tmp/pip-modern-metadata-rygckqma/polyply.egg-info/SOURCES.txt' 2024-04-29T01:24:50,727 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated. 2024-04-29T01:24:50,728 !! 2024-04-29T01:24:50,729 ******************************************************************************** 2024-04-29T01:24:50,729 Please avoid running ``setup.py`` and ``easy_install``. 2024-04-29T01:24:50,729 Instead, use pypa/build, pypa/installer or other 2024-04-29T01:24:50,730 standards-based tools. 2024-04-29T01:24:50,731 See https://github.com/pypa/setuptools/issues/917 for details. 2024-04-29T01:24:50,731 ******************************************************************************** 2024-04-29T01:24:50,732 !! 2024-04-29T01:24:50,732 easy_install.initialize_options(self) 2024-04-29T01:24:50,732 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-04-29T01:24:50,733 !! 2024-04-29T01:24:50,733 ******************************************************************************** 2024-04-29T01:24:50,734 Please avoid running ``setup.py`` directly. 2024-04-29T01:24:50,734 Instead, use pypa/build, pypa/installer or other 2024-04-29T01:24:50,734 standards-based tools. 2024-04-29T01:24:50,735 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-04-29T01:24:50,735 ******************************************************************************** 2024-04-29T01:24:50,736 !! 2024-04-29T01:24:50,736 self.initialize_options() 2024-04-29T01:24:50,736 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-04-29T01:24:50,737 !! 2024-04-29T01:24:50,738 ******************************************************************************** 2024-04-29T01:24:50,738 Usage of dash-separated 'description-content-type' will not be supported in future 2024-04-29T01:24:50,738 versions. Please use the underscore name 'description_content_type' instead. 2024-04-29T01:24:50,739 This deprecation is overdue, please update your project and remove deprecated 2024-04-29T01:24:50,739 calls to avoid build errors in the future. 2024-04-29T01:24:50,740 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-04-29T01:24:50,740 ******************************************************************************** 2024-04-29T01:24:50,741 !! 2024-04-29T01:24:50,741 opt = self.warn_dash_deprecation(opt, section) 2024-04-29T01:24:50,742 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-04-29T01:24:50,742 !! 2024-04-29T01:24:50,743 ******************************************************************************** 2024-04-29T01:24:50,743 Usage of dash-separated 'setup-requires' will not be supported in future 2024-04-29T01:24:50,743 versions. Please use the underscore name 'setup_requires' instead. 2024-04-29T01:24:50,744 This deprecation is overdue, please update your project and remove deprecated 2024-04-29T01:24:50,744 calls to avoid build errors in the future. 2024-04-29T01:24:50,745 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-04-29T01:24:50,745 ******************************************************************************** 2024-04-29T01:24:50,746 !! 2024-04-29T01:24:50,746 opt = self.warn_dash_deprecation(opt, section) 2024-04-29T01:24:50,747 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-04-29T01:24:50,747 !! 2024-04-29T01:24:50,748 ******************************************************************************** 2024-04-29T01:24:50,748 Usage of dash-separated 'install-requires' will not be supported in future 2024-04-29T01:24:50,748 versions. Please use the underscore name 'install_requires' instead. 2024-04-29T01:24:50,749 This deprecation is overdue, please update your project and remove deprecated 2024-04-29T01:24:50,749 calls to avoid build errors in the future. 2024-04-29T01:24:50,750 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-04-29T01:24:50,750 ******************************************************************************** 2024-04-29T01:24:50,751 !! 2024-04-29T01:24:50,751 opt = self.warn_dash_deprecation(opt, section) 2024-04-29T01:24:50,752 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-04-29T01:24:50,752 !! 2024-04-29T01:24:50,753 ******************************************************************************** 2024-04-29T01:24:50,753 Usage of dash-separated 'zip-safe' will not be supported in future 2024-04-29T01:24:50,753 versions. Please use the underscore name 'zip_safe' instead. 2024-04-29T01:24:50,754 This deprecation is overdue, please update your project and remove deprecated 2024-04-29T01:24:50,755 calls to avoid build errors in the future. 2024-04-29T01:24:50,756 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-04-29T01:24:50,756 ******************************************************************************** 2024-04-29T01:24:50,756 !! 2024-04-29T01:24:50,757 opt = self.warn_dash_deprecation(opt, section) 2024-04-29T01:24:50,757 warning: no previously-included files found matching '.gitignore' 2024-04-29T01:24:50,758 warning: no previously-included files found matching '.gitreview' 2024-04-29T01:24:50,758 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-04-29T01:24:50,883 adding license file 'LICENSE' 2024-04-29T01:24:50,883 adding license file 'AUTHORS' 2024-04-29T01:24:50,917 writing manifest file '/tmp/pip-modern-metadata-rygckqma/polyply.egg-info/SOURCES.txt' 2024-04-29T01:24:50,920 creating '/tmp/pip-modern-metadata-rygckqma/polyply-1.7.0.dist-info' 2024-04-29T01:24:51,089 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2024-04-29T01:24:51,357 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-29T01:24:51,374 Source in /tmp/pip-wheel-kxid57ax/polyply_317e15d489da47b7973c2a978beaa0c6 has version 1.7.0, which satisfies requirement polyply==1.7.0 from https://files.pythonhosted.org/packages/16/52/da75ed492dcb85008d81e9d06106e49b42a22da69c9200f4074be378b59c/polyply-1.7.0.tar.gz 2024-04-29T01:24:51,376 Removed polyply==1.7.0 from https://files.pythonhosted.org/packages/16/52/da75ed492dcb85008d81e9d06106e49b42a22da69c9200f4074be378b59c/polyply-1.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-on5abu_0' 2024-04-29T01:24:51,387 Created temporary directory: /tmp/pip-unpack-z7obiwax 2024-04-29T01:24:51,389 Created temporary directory: /tmp/pip-unpack-6ckx0xzk 2024-04-29T01:24:51,418 Building wheels for collected packages: polyply 2024-04-29T01:24:51,429 Created temporary directory: /tmp/pip-wheel-5norucoi 2024-04-29T01:24:51,429 Destination directory: /tmp/pip-wheel-5norucoi 2024-04-29T01:24:51,434 Building wheel for polyply (pyproject.toml): started 2024-04-29T01:24:51,437 Running command Building wheel for polyply (pyproject.toml) 2024-04-29T01:24:53,569 running bdist_wheel 2024-04-29T01:24:53,593 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated. 2024-04-29T01:24:53,594 !! 2024-04-29T01:24:53,594 ******************************************************************************** 2024-04-29T01:24:53,595 Please avoid running ``setup.py`` and ``easy_install``. 2024-04-29T01:24:53,595 Instead, use pypa/build, pypa/installer or other 2024-04-29T01:24:53,596 standards-based tools. 2024-04-29T01:24:53,596 See https://github.com/pypa/setuptools/issues/917 for details. 2024-04-29T01:24:53,597 ******************************************************************************** 2024-04-29T01:24:53,598 !! 2024-04-29T01:24:53,598 easy_install.initialize_options(self) 2024-04-29T01:24:53,598 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-04-29T01:24:53,599 !! 2024-04-29T01:24:53,600 ******************************************************************************** 2024-04-29T01:24:53,600 Usage of dash-separated 'description-content-type' will not be supported in future 2024-04-29T01:24:53,600 versions. Please use the underscore name 'description_content_type' instead. 2024-04-29T01:24:53,601 This deprecation is overdue, please update your project and remove deprecated 2024-04-29T01:24:53,601 calls to avoid build errors in the future. 2024-04-29T01:24:53,602 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-04-29T01:24:53,602 ******************************************************************************** 2024-04-29T01:24:53,603 !! 2024-04-29T01:24:53,603 opt = self.warn_dash_deprecation(opt, section) 2024-04-29T01:24:53,604 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-04-29T01:24:53,604 !! 2024-04-29T01:24:53,604 ******************************************************************************** 2024-04-29T01:24:53,605 Usage of dash-separated 'setup-requires' will not be supported in future 2024-04-29T01:24:53,605 versions. Please use the underscore name 'setup_requires' instead. 2024-04-29T01:24:53,606 This deprecation is overdue, please update your project and remove deprecated 2024-04-29T01:24:53,606 calls to avoid build errors in the future. 2024-04-29T01:24:53,607 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-04-29T01:24:53,607 ******************************************************************************** 2024-04-29T01:24:53,608 !! 2024-04-29T01:24:53,609 opt = self.warn_dash_deprecation(opt, section) 2024-04-29T01:24:53,609 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-04-29T01:24:53,609 !! 2024-04-29T01:24:53,610 ******************************************************************************** 2024-04-29T01:24:53,611 Usage of dash-separated 'install-requires' will not be supported in future 2024-04-29T01:24:53,611 versions. Please use the underscore name 'install_requires' instead. 2024-04-29T01:24:53,612 This deprecation is overdue, please update your project and remove deprecated 2024-04-29T01:24:53,612 calls to avoid build errors in the future. 2024-04-29T01:24:53,613 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-04-29T01:24:53,613 ******************************************************************************** 2024-04-29T01:24:53,614 !! 2024-04-29T01:24:53,614 opt = self.warn_dash_deprecation(opt, section) 2024-04-29T01:24:53,614 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-04-29T01:24:53,614 !! 2024-04-29T01:24:53,615 ******************************************************************************** 2024-04-29T01:24:53,615 Usage of dash-separated 'zip-safe' will not be supported in future 2024-04-29T01:24:53,616 versions. Please use the underscore name 'zip_safe' instead. 2024-04-29T01:24:53,617 This deprecation is overdue, please update your project and remove deprecated 2024-04-29T01:24:53,618 calls to avoid build errors in the future. 2024-04-29T01:24:53,618 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-04-29T01:24:53,619 ******************************************************************************** 2024-04-29T01:24:53,620 !! 2024-04-29T01:24:53,621 opt = self.warn_dash_deprecation(opt, section) 2024-04-29T01:24:53,622 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2024-04-29T01:24:53,637 running build 2024-04-29T01:24:53,638 running build_py 2024-04-29T01:24:53,662 creating build 2024-04-29T01:24:53,663 creating build/lib 2024-04-29T01:24:53,664 creating build/lib/polyply 2024-04-29T01:24:53,666 creating build/lib/polyply/data 2024-04-29T01:24:53,668 copying polyply/data/__init__.py -> build/lib/polyply/data 2024-04-29T01:24:53,677 creating build/lib/polyply/src 2024-04-29T01:24:53,679 copying polyply/src/gen_seq.py -> build/lib/polyply/src 2024-04-29T01:24:53,684 copying polyply/src/load_library.py -> build/lib/polyply/src 2024-04-29T01:24:53,688 copying polyply/src/logging.py -> build/lib/polyply/src 2024-04-29T01:24:53,692 copying polyply/src/random_walk.py -> build/lib/polyply/src 2024-04-29T01:24:53,698 copying polyply/src/minimizer.py -> build/lib/polyply/src 2024-04-29T01:24:53,702 copying polyply/src/nonbond_engine.py -> build/lib/polyply/src 2024-04-29T01:24:53,707 copying polyply/src/topology.py -> build/lib/polyply/src 2024-04-29T01:24:53,712 copying polyply/src/persistence.py -> build/lib/polyply/src 2024-04-29T01:24:53,717 copying polyply/src/ff_parser_sub.py -> build/lib/polyply/src 2024-04-29T01:24:53,720 copying polyply/src/backmap.py -> build/lib/polyply/src 2024-04-29T01:24:53,725 copying polyply/src/build_file_parser.py -> build/lib/polyply/src 2024-04-29T01:24:53,729 copying polyply/src/annotate_ligands.py -> build/lib/polyply/src 2024-04-29T01:24:53,733 copying polyply/src/__init__.py -> build/lib/polyply/src 2024-04-29T01:24:53,737 copying polyply/src/generate_templates.py -> build/lib/polyply/src 2024-04-29T01:24:53,741 copying polyply/src/meta_molecule.py -> build/lib/polyply/src 2024-04-29T01:24:53,746 copying polyply/src/processor.py -> build/lib/polyply/src 2024-04-29T01:24:53,749 copying polyply/src/simple_seq_parsers.py -> build/lib/polyply/src 2024-04-29T01:24:53,754 copying polyply/src/linalg_functions.py -> build/lib/polyply/src 2024-04-29T01:24:53,758 copying polyply/src/check_residue_equivalence.py -> build/lib/polyply/src 2024-04-29T01:24:53,762 copying polyply/src/top_parser.py -> build/lib/polyply/src 2024-04-29T01:24:53,767 copying polyply/src/apply_modifications.py -> build/lib/polyply/src 2024-04-29T01:24:53,770 copying polyply/src/gen_dna.py -> build/lib/polyply/src 2024-04-29T01:24:53,774 copying polyply/src/virtual_site_builder.py -> build/lib/polyply/src 2024-04-29T01:24:53,778 copying polyply/src/polyply_parser.py -> build/lib/polyply/src 2024-04-29T01:24:53,782 copying polyply/src/graph_utils.py -> build/lib/polyply/src 2024-04-29T01:24:53,786 copying polyply/src/restraints.py -> build/lib/polyply/src 2024-04-29T01:24:53,790 copying polyply/src/build_system.py -> build/lib/polyply/src 2024-04-29T01:24:53,794 copying polyply/src/gen_itp.py -> build/lib/polyply/src 2024-04-29T01:24:53,799 copying polyply/src/map_to_molecule.py -> build/lib/polyply/src 2024-04-29T01:24:53,804 copying polyply/src/gen_coords.py -> build/lib/polyply/src 2024-04-29T01:24:53,809 copying polyply/src/apply_links.py -> build/lib/polyply/src 2024-04-29T01:24:53,820 creating build/lib/polyply/tests 2024-04-29T01:24:53,822 copying polyply/tests/test_itp_files.py -> build/lib/polyply/tests 2024-04-29T01:24:53,827 copying polyply/tests/test_restraints.py -> build/lib/polyply/tests 2024-04-29T01:24:53,831 copying polyply/tests/test_backmap.py -> build/lib/polyply/tests 2024-04-29T01:24:53,834 copying polyply/tests/test_lib_files.py -> build/lib/polyply/tests 2024-04-29T01:24:53,838 copying polyply/tests/test_persistence.py -> build/lib/polyply/tests 2024-04-29T01:24:53,843 copying polyply/tests/test_gen_params.py -> build/lib/polyply/tests 2024-04-29T01:24:53,847 copying polyply/tests/test_map_to_molecule.py -> build/lib/polyply/tests 2024-04-29T01:24:53,852 copying polyply/tests/test_linalg.py -> build/lib/polyply/tests 2024-04-29T01:24:53,856 copying polyply/tests/test_meta_molecule.py -> build/lib/polyply/tests 2024-04-29T01:24:53,861 copying polyply/tests/test_polyply_input.py -> build/lib/polyply/tests 2024-04-29T01:24:53,865 copying polyply/tests/test_nb_engine.py -> build/lib/polyply/tests 2024-04-29T01:24:53,869 copying polyply/tests/example_fixtures.py -> build/lib/polyply/tests 2024-04-29T01:24:53,873 copying polyply/tests/test_load_library.py -> build/lib/polyply/tests 2024-04-29T01:24:53,876 copying polyply/tests/test_build_system.py -> build/lib/polyply/tests 2024-04-29T01:24:53,880 copying polyply/tests/test_annotate_lingads.py -> build/lib/polyply/tests 2024-04-29T01:24:53,885 copying polyply/tests/__init__.py -> build/lib/polyply/tests 2024-04-29T01:24:53,888 copying polyply/tests/test_graph_utils.py -> build/lib/polyply/tests 2024-04-29T01:24:53,892 copying polyply/tests/test_ff_parser.py -> build/lib/polyply/tests 2024-04-29T01:24:53,895 copying polyply/tests/test_topology.py -> build/lib/polyply/tests 2024-04-29T01:24:53,902 copying polyply/tests/test_gen_coords.py -> build/lib/polyply/tests 2024-04-29T01:24:53,905 copying polyply/tests/test_gen_coords_logic.py -> build/lib/polyply/tests 2024-04-29T01:24:53,909 copying polyply/tests/test_generate_templates.py -> build/lib/polyply/tests 2024-04-29T01:24:53,914 copying polyply/tests/test_optimize_geometry.py -> build/lib/polyply/tests 2024-04-29T01:24:53,918 copying polyply/tests/test_simple_seq_parsers.py -> build/lib/polyply/tests 2024-04-29T01:24:53,922 copying polyply/tests/test_apply_links.py -> build/lib/polyply/tests 2024-04-29T01:24:53,928 copying polyply/tests/test_top_parser.py -> build/lib/polyply/tests 2024-04-29T01:24:53,932 copying polyply/tests/test_residue_check.py -> build/lib/polyply/tests 2024-04-29T01:24:53,936 copying polyply/tests/test_logging.py -> build/lib/polyply/tests 2024-04-29T01:24:53,940 copying polyply/tests/test_build_file_parser.py -> build/lib/polyply/tests 2024-04-29T01:24:53,945 copying polyply/tests/test_vs_builder.py -> build/lib/polyply/tests 2024-04-29T01:24:53,948 copying polyply/tests/test_gen_dna.py -> build/lib/polyply/tests 2024-04-29T01:24:53,952 copying polyply/tests/test_gen_seq.py -> build/lib/polyply/tests 2024-04-29T01:24:53,956 copying polyply/tests/test_random_walk.py -> build/lib/polyply/tests 2024-04-29T01:24:53,962 copying polyply/__init__.py -> build/lib/polyply 2024-04-29T01:24:53,964 running egg_info 2024-04-29T01:24:54,029 writing polyply.egg-info/PKG-INFO 2024-04-29T01:24:54,035 writing dependency_links to polyply.egg-info/dependency_links.txt 2024-04-29T01:24:54,040 writing requirements to polyply.egg-info/requires.txt 2024-04-29T01:24:54,042 writing top-level names to polyply.egg-info/top_level.txt 2024-04-29T01:24:54,045 [pbr] Reusing existing SOURCES.txt 2024-04-29T01:24:54,132 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.data.gromos53A6' is absent from the `packages` configuration. 2024-04-29T01:24:54,133 !! 2024-04-29T01:24:54,134 ******************************************************************************** 2024-04-29T01:24:54,134 ############################ 2024-04-29T01:24:54,134 # Package would be ignored # 2024-04-29T01:24:54,135 ############################ 2024-04-29T01:24:54,135 Python recognizes 'polyply.data.gromos53A6' as an importable package[^1], 2024-04-29T01:24:54,135 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,136 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,136 package, please make sure that 'polyply.data.gromos53A6' is explicitly added 2024-04-29T01:24:54,137 to the `packages` configuration field. 2024-04-29T01:24:54,137 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,138 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,138 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,139 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,139 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,140 If you don't want 'polyply.data.gromos53A6' to be distributed and are 2024-04-29T01:24:54,140 already explicitly excluding 'polyply.data.gromos53A6' via 2024-04-29T01:24:54,141 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,141 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,142 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,143 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,144 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,144 even if it does not contain any `.py` files. 2024-04-29T01:24:54,144 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,144 directory, all directories are treated like packages. 2024-04-29T01:24:54,145 ******************************************************************************** 2024-04-29T01:24:54,145 !! 2024-04-29T01:24:54,146 check.warn(importable) 2024-04-29T01:24:54,146 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.data.ibi_cgm3' is absent from the `packages` configuration. 2024-04-29T01:24:54,146 !! 2024-04-29T01:24:54,147 ******************************************************************************** 2024-04-29T01:24:54,147 ############################ 2024-04-29T01:24:54,148 # Package would be ignored # 2024-04-29T01:24:54,148 ############################ 2024-04-29T01:24:54,148 Python recognizes 'polyply.data.ibi_cgm3' as an importable package[^1], 2024-04-29T01:24:54,149 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,149 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,149 package, please make sure that 'polyply.data.ibi_cgm3' is explicitly added 2024-04-29T01:24:54,150 to the `packages` configuration field. 2024-04-29T01:24:54,150 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,151 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,151 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,152 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,152 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,153 If you don't want 'polyply.data.ibi_cgm3' to be distributed and are 2024-04-29T01:24:54,153 already explicitly excluding 'polyply.data.ibi_cgm3' via 2024-04-29T01:24:54,154 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,154 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,154 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,155 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,156 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,157 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,157 even if it does not contain any `.py` files. 2024-04-29T01:24:54,157 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,158 directory, all directories are treated like packages. 2024-04-29T01:24:54,158 ******************************************************************************** 2024-04-29T01:24:54,159 !! 2024-04-29T01:24:54,159 check.warn(importable) 2024-04-29T01:24:54,159 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.data.ibi_gbcg' is absent from the `packages` configuration. 2024-04-29T01:24:54,160 !! 2024-04-29T01:24:54,160 ******************************************************************************** 2024-04-29T01:24:54,161 ############################ 2024-04-29T01:24:54,161 # Package would be ignored # 2024-04-29T01:24:54,161 ############################ 2024-04-29T01:24:54,162 Python recognizes 'polyply.data.ibi_gbcg' as an importable package[^1], 2024-04-29T01:24:54,162 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,162 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,163 package, please make sure that 'polyply.data.ibi_gbcg' is explicitly added 2024-04-29T01:24:54,163 to the `packages` configuration field. 2024-04-29T01:24:54,164 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,164 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,164 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,165 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,166 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,166 If you don't want 'polyply.data.ibi_gbcg' to be distributed and are 2024-04-29T01:24:54,167 already explicitly excluding 'polyply.data.ibi_gbcg' via 2024-04-29T01:24:54,167 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,167 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,168 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,168 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,169 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,170 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,170 even if it does not contain any `.py` files. 2024-04-29T01:24:54,171 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,171 directory, all directories are treated like packages. 2024-04-29T01:24:54,171 ******************************************************************************** 2024-04-29T01:24:54,172 !! 2024-04-29T01:24:54,172 check.warn(importable) 2024-04-29T01:24:54,173 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.data.martini2' is absent from the `packages` configuration. 2024-04-29T01:24:54,173 !! 2024-04-29T01:24:54,174 ******************************************************************************** 2024-04-29T01:24:54,174 ############################ 2024-04-29T01:24:54,174 # Package would be ignored # 2024-04-29T01:24:54,175 ############################ 2024-04-29T01:24:54,175 Python recognizes 'polyply.data.martini2' as an importable package[^1], 2024-04-29T01:24:54,175 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,176 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,176 package, please make sure that 'polyply.data.martini2' is explicitly added 2024-04-29T01:24:54,177 to the `packages` configuration field. 2024-04-29T01:24:54,177 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,178 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,178 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,179 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,179 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,180 If you don't want 'polyply.data.martini2' to be distributed and are 2024-04-29T01:24:54,180 already explicitly excluding 'polyply.data.martini2' via 2024-04-29T01:24:54,181 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,181 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,181 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,182 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,183 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,184 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,184 even if it does not contain any `.py` files. 2024-04-29T01:24:54,184 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,185 directory, all directories are treated like packages. 2024-04-29T01:24:54,185 ******************************************************************************** 2024-04-29T01:24:54,186 !! 2024-04-29T01:24:54,186 check.warn(importable) 2024-04-29T01:24:54,186 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.data.martini3' is absent from the `packages` configuration. 2024-04-29T01:24:54,187 !! 2024-04-29T01:24:54,187 ******************************************************************************** 2024-04-29T01:24:54,188 ############################ 2024-04-29T01:24:54,188 # Package would be ignored # 2024-04-29T01:24:54,188 ############################ 2024-04-29T01:24:54,189 Python recognizes 'polyply.data.martini3' as an importable package[^1], 2024-04-29T01:24:54,189 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,189 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,190 package, please make sure that 'polyply.data.martini3' is explicitly added 2024-04-29T01:24:54,190 to the `packages` configuration field. 2024-04-29T01:24:54,191 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,191 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,191 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,192 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,193 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,193 If you don't want 'polyply.data.martini3' to be distributed and are 2024-04-29T01:24:54,194 already explicitly excluding 'polyply.data.martini3' via 2024-04-29T01:24:54,194 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,194 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,195 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,195 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,196 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,197 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,197 even if it does not contain any `.py` files. 2024-04-29T01:24:54,197 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,198 directory, all directories are treated like packages. 2024-04-29T01:24:54,198 ******************************************************************************** 2024-04-29T01:24:54,199 !! 2024-04-29T01:24:54,199 check.warn(importable) 2024-04-29T01:24:54,199 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.data.martini3_beta' is absent from the `packages` configuration. 2024-04-29T01:24:54,200 !! 2024-04-29T01:24:54,200 ******************************************************************************** 2024-04-29T01:24:54,201 ############################ 2024-04-29T01:24:54,201 # Package would be ignored # 2024-04-29T01:24:54,201 ############################ 2024-04-29T01:24:54,202 Python recognizes 'polyply.data.martini3_beta' as an importable package[^1], 2024-04-29T01:24:54,202 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,203 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,203 package, please make sure that 'polyply.data.martini3_beta' is explicitly added 2024-04-29T01:24:54,203 to the `packages` configuration field. 2024-04-29T01:24:54,204 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,204 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,204 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,205 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,206 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,206 If you don't want 'polyply.data.martini3_beta' to be distributed and are 2024-04-29T01:24:54,207 already explicitly excluding 'polyply.data.martini3_beta' via 2024-04-29T01:24:54,207 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,207 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,207 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,208 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,209 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,210 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,210 even if it does not contain any `.py` files. 2024-04-29T01:24:54,210 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,211 directory, all directories are treated like packages. 2024-04-29T01:24:54,211 ******************************************************************************** 2024-04-29T01:24:54,211 !! 2024-04-29T01:24:54,212 check.warn(importable) 2024-04-29T01:24:54,212 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.data.oplsaaLigParGen' is absent from the `packages` configuration. 2024-04-29T01:24:54,212 !! 2024-04-29T01:24:54,213 ******************************************************************************** 2024-04-29T01:24:54,213 ############################ 2024-04-29T01:24:54,214 # Package would be ignored # 2024-04-29T01:24:54,214 ############################ 2024-04-29T01:24:54,214 Python recognizes 'polyply.data.oplsaaLigParGen' as an importable package[^1], 2024-04-29T01:24:54,215 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,215 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,215 package, please make sure that 'polyply.data.oplsaaLigParGen' is explicitly added 2024-04-29T01:24:54,216 to the `packages` configuration field. 2024-04-29T01:24:54,216 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,217 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,217 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,218 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,218 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,219 If you don't want 'polyply.data.oplsaaLigParGen' to be distributed and are 2024-04-29T01:24:54,219 already explicitly excluding 'polyply.data.oplsaaLigParGen' via 2024-04-29T01:24:54,219 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,220 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,220 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,221 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,222 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,222 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,223 even if it does not contain any `.py` files. 2024-04-29T01:24:54,223 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,223 directory, all directories are treated like packages. 2024-04-29T01:24:54,224 ******************************************************************************** 2024-04-29T01:24:54,224 !! 2024-04-29T01:24:54,225 check.warn(importable) 2024-04-29T01:24:54,225 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.data.parmbsc1' is absent from the `packages` configuration. 2024-04-29T01:24:54,225 !! 2024-04-29T01:24:54,226 ******************************************************************************** 2024-04-29T01:24:54,226 ############################ 2024-04-29T01:24:54,226 # Package would be ignored # 2024-04-29T01:24:54,227 ############################ 2024-04-29T01:24:54,227 Python recognizes 'polyply.data.parmbsc1' as an importable package[^1], 2024-04-29T01:24:54,227 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,228 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,228 package, please make sure that 'polyply.data.parmbsc1' is explicitly added 2024-04-29T01:24:54,229 to the `packages` configuration field. 2024-04-29T01:24:54,229 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,229 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,230 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,230 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,231 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,232 If you don't want 'polyply.data.parmbsc1' to be distributed and are 2024-04-29T01:24:54,232 already explicitly excluding 'polyply.data.parmbsc1' via 2024-04-29T01:24:54,232 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,233 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,233 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,234 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,234 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,235 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,236 even if it does not contain any `.py` files. 2024-04-29T01:24:54,236 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,236 directory, all directories are treated like packages. 2024-04-29T01:24:54,237 ******************************************************************************** 2024-04-29T01:24:54,237 !! 2024-04-29T01:24:54,237 check.warn(importable) 2024-04-29T01:24:54,238 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.ff' is absent from the `packages` configuration. 2024-04-29T01:24:54,238 !! 2024-04-29T01:24:54,239 ******************************************************************************** 2024-04-29T01:24:54,239 ############################ 2024-04-29T01:24:54,239 # Package would be ignored # 2024-04-29T01:24:54,240 ############################ 2024-04-29T01:24:54,240 Python recognizes 'polyply.tests.test_data.ff' as an importable package[^1], 2024-04-29T01:24:54,240 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,241 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,241 package, please make sure that 'polyply.tests.test_data.ff' is explicitly added 2024-04-29T01:24:54,241 to the `packages` configuration field. 2024-04-29T01:24:54,242 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,242 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,243 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,243 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,244 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,245 If you don't want 'polyply.tests.test_data.ff' to be distributed and are 2024-04-29T01:24:54,245 already explicitly excluding 'polyply.tests.test_data.ff' via 2024-04-29T01:24:54,245 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,245 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,246 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,246 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,247 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,248 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,248 even if it does not contain any `.py` files. 2024-04-29T01:24:54,248 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,249 directory, all directories are treated like packages. 2024-04-29T01:24:54,249 ******************************************************************************** 2024-04-29T01:24:54,250 !! 2024-04-29T01:24:54,250 check.warn(importable) 2024-04-29T01:24:54,250 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.gen_params.input' is absent from the `packages` configuration. 2024-04-29T01:24:54,251 !! 2024-04-29T01:24:54,251 ******************************************************************************** 2024-04-29T01:24:54,252 ############################ 2024-04-29T01:24:54,252 # Package would be ignored # 2024-04-29T01:24:54,252 ############################ 2024-04-29T01:24:54,253 Python recognizes 'polyply.tests.test_data.gen_params.input' as an importable package[^1], 2024-04-29T01:24:54,253 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,253 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,254 package, please make sure that 'polyply.tests.test_data.gen_params.input' is explicitly added 2024-04-29T01:24:54,254 to the `packages` configuration field. 2024-04-29T01:24:54,255 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,255 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,255 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,256 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,256 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,257 If you don't want 'polyply.tests.test_data.gen_params.input' to be distributed and are 2024-04-29T01:24:54,257 already explicitly excluding 'polyply.tests.test_data.gen_params.input' via 2024-04-29T01:24:54,258 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,258 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,258 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,259 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,259 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,260 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,261 even if it does not contain any `.py` files. 2024-04-29T01:24:54,261 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,261 directory, all directories are treated like packages. 2024-04-29T01:24:54,262 ******************************************************************************** 2024-04-29T01:24:54,262 !! 2024-04-29T01:24:54,263 check.warn(importable) 2024-04-29T01:24:54,263 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.gen_params.logging' is absent from the `packages` configuration. 2024-04-29T01:24:54,263 !! 2024-04-29T01:24:54,264 ******************************************************************************** 2024-04-29T01:24:54,264 ############################ 2024-04-29T01:24:54,264 # Package would be ignored # 2024-04-29T01:24:54,265 ############################ 2024-04-29T01:24:54,265 Python recognizes 'polyply.tests.test_data.gen_params.logging' as an importable package[^1], 2024-04-29T01:24:54,265 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,266 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,266 package, please make sure that 'polyply.tests.test_data.gen_params.logging' is explicitly added 2024-04-29T01:24:54,267 to the `packages` configuration field. 2024-04-29T01:24:54,267 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,267 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,268 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,268 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,269 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,270 If you don't want 'polyply.tests.test_data.gen_params.logging' to be distributed and are 2024-04-29T01:24:54,270 already explicitly excluding 'polyply.tests.test_data.gen_params.logging' via 2024-04-29T01:24:54,270 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,271 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,271 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,272 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,272 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,273 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,274 even if it does not contain any `.py` files. 2024-04-29T01:24:54,274 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,274 directory, all directories are treated like packages. 2024-04-29T01:24:54,274 ******************************************************************************** 2024-04-29T01:24:54,275 !! 2024-04-29T01:24:54,275 check.warn(importable) 2024-04-29T01:24:54,276 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.gen_params.ref' is absent from the `packages` configuration. 2024-04-29T01:24:54,276 !! 2024-04-29T01:24:54,277 ******************************************************************************** 2024-04-29T01:24:54,277 ############################ 2024-04-29T01:24:54,277 # Package would be ignored # 2024-04-29T01:24:54,278 ############################ 2024-04-29T01:24:54,278 Python recognizes 'polyply.tests.test_data.gen_params.ref' as an importable package[^1], 2024-04-29T01:24:54,278 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,279 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,279 package, please make sure that 'polyply.tests.test_data.gen_params.ref' is explicitly added 2024-04-29T01:24:54,279 to the `packages` configuration field. 2024-04-29T01:24:54,280 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,280 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,281 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,281 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,282 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,282 If you don't want 'polyply.tests.test_data.gen_params.ref' to be distributed and are 2024-04-29T01:24:54,283 already explicitly excluding 'polyply.tests.test_data.gen_params.ref' via 2024-04-29T01:24:54,283 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,284 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,284 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,285 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,285 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,286 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,286 even if it does not contain any `.py` files. 2024-04-29T01:24:54,287 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,287 directory, all directories are treated like packages. 2024-04-29T01:24:54,287 ******************************************************************************** 2024-04-29T01:24:54,288 !! 2024-04-29T01:24:54,288 check.warn(importable) 2024-04-29T01:24:54,289 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.gen_seq.input' is absent from the `packages` configuration. 2024-04-29T01:24:54,289 !! 2024-04-29T01:24:54,290 ******************************************************************************** 2024-04-29T01:24:54,290 ############################ 2024-04-29T01:24:54,290 # Package would be ignored # 2024-04-29T01:24:54,291 ############################ 2024-04-29T01:24:54,291 Python recognizes 'polyply.tests.test_data.gen_seq.input' as an importable package[^1], 2024-04-29T01:24:54,291 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,292 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,292 package, please make sure that 'polyply.tests.test_data.gen_seq.input' is explicitly added 2024-04-29T01:24:54,293 to the `packages` configuration field. 2024-04-29T01:24:54,293 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,293 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,294 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,294 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,295 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,296 If you don't want 'polyply.tests.test_data.gen_seq.input' to be distributed and are 2024-04-29T01:24:54,296 already explicitly excluding 'polyply.tests.test_data.gen_seq.input' via 2024-04-29T01:24:54,296 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,297 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,297 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,297 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,298 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,299 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,299 even if it does not contain any `.py` files. 2024-04-29T01:24:54,300 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,300 directory, all directories are treated like packages. 2024-04-29T01:24:54,300 ******************************************************************************** 2024-04-29T01:24:54,301 !! 2024-04-29T01:24:54,301 check.warn(importable) 2024-04-29T01:24:54,302 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.gen_seq.output' is absent from the `packages` configuration. 2024-04-29T01:24:54,302 !! 2024-04-29T01:24:54,302 ******************************************************************************** 2024-04-29T01:24:54,303 ############################ 2024-04-29T01:24:54,303 # Package would be ignored # 2024-04-29T01:24:54,303 ############################ 2024-04-29T01:24:54,304 Python recognizes 'polyply.tests.test_data.gen_seq.output' as an importable package[^1], 2024-04-29T01:24:54,304 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,305 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,305 package, please make sure that 'polyply.tests.test_data.gen_seq.output' is explicitly added 2024-04-29T01:24:54,305 to the `packages` configuration field. 2024-04-29T01:24:54,306 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,306 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,306 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,307 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,308 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,308 If you don't want 'polyply.tests.test_data.gen_seq.output' to be distributed and are 2024-04-29T01:24:54,309 already explicitly excluding 'polyply.tests.test_data.gen_seq.output' via 2024-04-29T01:24:54,309 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,309 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,310 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,310 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,311 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,312 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,312 even if it does not contain any `.py` files. 2024-04-29T01:24:54,312 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,313 directory, all directories are treated like packages. 2024-04-29T01:24:54,313 ******************************************************************************** 2024-04-29T01:24:54,314 !! 2024-04-29T01:24:54,314 check.warn(importable) 2024-04-29T01:24:54,314 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.gen_seq.ref' is absent from the `packages` configuration. 2024-04-29T01:24:54,314 !! 2024-04-29T01:24:54,315 ******************************************************************************** 2024-04-29T01:24:54,315 ############################ 2024-04-29T01:24:54,316 # Package would be ignored # 2024-04-29T01:24:54,316 ############################ 2024-04-29T01:24:54,316 Python recognizes 'polyply.tests.test_data.gen_seq.ref' as an importable package[^1], 2024-04-29T01:24:54,317 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,317 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,318 package, please make sure that 'polyply.tests.test_data.gen_seq.ref' is explicitly added 2024-04-29T01:24:54,318 to the `packages` configuration field. 2024-04-29T01:24:54,318 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,319 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,319 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,320 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,320 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,321 If you don't want 'polyply.tests.test_data.gen_seq.ref' to be distributed and are 2024-04-29T01:24:54,322 already explicitly excluding 'polyply.tests.test_data.gen_seq.ref' via 2024-04-29T01:24:54,322 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,322 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,322 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,323 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,324 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,325 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,325 even if it does not contain any `.py` files. 2024-04-29T01:24:54,325 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,326 directory, all directories are treated like packages. 2024-04-29T01:24:54,326 ******************************************************************************** 2024-04-29T01:24:54,327 !! 2024-04-29T01:24:54,327 check.warn(importable) 2024-04-29T01:24:54,327 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.itp' is absent from the `packages` configuration. 2024-04-29T01:24:54,327 !! 2024-04-29T01:24:54,328 ******************************************************************************** 2024-04-29T01:24:54,328 ############################ 2024-04-29T01:24:54,329 # Package would be ignored # 2024-04-29T01:24:54,329 ############################ 2024-04-29T01:24:54,329 Python recognizes 'polyply.tests.test_data.itp' as an importable package[^1], 2024-04-29T01:24:54,330 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,331 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,331 package, please make sure that 'polyply.tests.test_data.itp' is explicitly added 2024-04-29T01:24:54,332 to the `packages` configuration field. 2024-04-29T01:24:54,333 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,333 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,334 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,335 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,335 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,336 If you don't want 'polyply.tests.test_data.itp' to be distributed and are 2024-04-29T01:24:54,337 already explicitly excluding 'polyply.tests.test_data.itp' via 2024-04-29T01:24:54,337 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,338 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,338 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,339 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,340 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,341 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,342 even if it does not contain any `.py` files. 2024-04-29T01:24:54,342 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,343 directory, all directories are treated like packages. 2024-04-29T01:24:54,343 ******************************************************************************** 2024-04-29T01:24:54,344 !! 2024-04-29T01:24:54,344 check.warn(importable) 2024-04-29T01:24:54,345 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.json' is absent from the `packages` configuration. 2024-04-29T01:24:54,345 !! 2024-04-29T01:24:54,346 ******************************************************************************** 2024-04-29T01:24:54,347 ############################ 2024-04-29T01:24:54,347 # Package would be ignored # 2024-04-29T01:24:54,347 ############################ 2024-04-29T01:24:54,348 Python recognizes 'polyply.tests.test_data.json' as an importable package[^1], 2024-04-29T01:24:54,348 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,349 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,349 package, please make sure that 'polyply.tests.test_data.json' is explicitly added 2024-04-29T01:24:54,350 to the `packages` configuration field. 2024-04-29T01:24:54,350 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,351 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,351 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,352 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,352 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,353 If you don't want 'polyply.tests.test_data.json' to be distributed and are 2024-04-29T01:24:54,353 already explicitly excluding 'polyply.tests.test_data.json' via 2024-04-29T01:24:54,354 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,354 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,354 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,355 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,355 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,356 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,357 even if it does not contain any `.py` files. 2024-04-29T01:24:54,357 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,357 directory, all directories are treated like packages. 2024-04-29T01:24:54,358 ******************************************************************************** 2024-04-29T01:24:54,358 !! 2024-04-29T01:24:54,358 check.warn(importable) 2024-04-29T01:24:54,359 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests' is absent from the `packages` configuration. 2024-04-29T01:24:54,359 !! 2024-04-29T01:24:54,360 ******************************************************************************** 2024-04-29T01:24:54,360 ############################ 2024-04-29T01:24:54,360 # Package would be ignored # 2024-04-29T01:24:54,361 ############################ 2024-04-29T01:24:54,361 Python recognizes 'polyply.tests.test_data.library_tests' as an importable package[^1], 2024-04-29T01:24:54,361 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,362 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,362 package, please make sure that 'polyply.tests.test_data.library_tests' is explicitly added 2024-04-29T01:24:54,362 to the `packages` configuration field. 2024-04-29T01:24:54,363 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,363 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,364 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,364 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,365 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,366 If you don't want 'polyply.tests.test_data.library_tests' to be distributed and are 2024-04-29T01:24:54,366 already explicitly excluding 'polyply.tests.test_data.library_tests' via 2024-04-29T01:24:54,366 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,366 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,367 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,367 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,368 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,369 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,369 even if it does not contain any `.py` files. 2024-04-29T01:24:54,370 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,370 directory, all directories are treated like packages. 2024-04-29T01:24:54,370 ******************************************************************************** 2024-04-29T01:24:54,371 !! 2024-04-29T01:24:54,371 check.warn(importable) 2024-04-29T01:24:54,372 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,372 !! 2024-04-29T01:24:54,373 ******************************************************************************** 2024-04-29T01:24:54,373 ############################ 2024-04-29T01:24:54,373 # Package would be ignored # 2024-04-29T01:24:54,374 ############################ 2024-04-29T01:24:54,374 Python recognizes 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' as an importable package[^1], 2024-04-29T01:24:54,374 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,375 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,375 package, please make sure that 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' is explicitly added 2024-04-29T01:24:54,375 to the `packages` configuration field. 2024-04-29T01:24:54,376 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,376 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,377 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,377 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,378 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,378 If you don't want 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' to be distributed and are 2024-04-29T01:24:54,379 already explicitly excluding 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' via 2024-04-29T01:24:54,379 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,379 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,380 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,380 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,381 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,382 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,382 even if it does not contain any `.py` files. 2024-04-29T01:24:54,382 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,383 directory, all directories are treated like packages. 2024-04-29T01:24:54,383 ******************************************************************************** 2024-04-29T01:24:54,384 !! 2024-04-29T01:24:54,384 check.warn(importable) 2024-04-29T01:24:54,384 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.ibi_cgm3.PTMA.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,385 !! 2024-04-29T01:24:54,385 ******************************************************************************** 2024-04-29T01:24:54,386 ############################ 2024-04-29T01:24:54,386 # Package would be ignored # 2024-04-29T01:24:54,386 ############################ 2024-04-29T01:24:54,387 Python recognizes 'polyply.tests.test_data.library_tests.ibi_cgm3.PTMA.polyply' as an importable package[^1], 2024-04-29T01:24:54,387 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,388 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,388 package, please make sure that 'polyply.tests.test_data.library_tests.ibi_cgm3.PTMA.polyply' is explicitly added 2024-04-29T01:24:54,388 to the `packages` configuration field. 2024-04-29T01:24:54,389 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,389 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,390 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,390 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,391 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,392 If you don't want 'polyply.tests.test_data.library_tests.ibi_cgm3.PTMA.polyply' to be distributed and are 2024-04-29T01:24:54,392 already explicitly excluding 'polyply.tests.test_data.library_tests.ibi_cgm3.PTMA.polyply' via 2024-04-29T01:24:54,392 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,393 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,393 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,393 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,394 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,395 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,395 even if it does not contain any `.py` files. 2024-04-29T01:24:54,396 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,396 directory, all directories are treated like packages. 2024-04-29T01:24:54,396 ******************************************************************************** 2024-04-29T01:24:54,397 !! 2024-04-29T01:24:54,397 check.warn(importable) 2024-04-29T01:24:54,398 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.ibi_gbcg.PTMA.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,398 !! 2024-04-29T01:24:54,399 ******************************************************************************** 2024-04-29T01:24:54,399 ############################ 2024-04-29T01:24:54,399 # Package would be ignored # 2024-04-29T01:24:54,400 ############################ 2024-04-29T01:24:54,400 Python recognizes 'polyply.tests.test_data.library_tests.ibi_gbcg.PTMA.polyply' as an importable package[^1], 2024-04-29T01:24:54,400 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,401 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,401 package, please make sure that 'polyply.tests.test_data.library_tests.ibi_gbcg.PTMA.polyply' is explicitly added 2024-04-29T01:24:54,401 to the `packages` configuration field. 2024-04-29T01:24:54,402 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,402 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,403 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,403 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,404 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,405 If you don't want 'polyply.tests.test_data.library_tests.ibi_gbcg.PTMA.polyply' to be distributed and are 2024-04-29T01:24:54,405 already explicitly excluding 'polyply.tests.test_data.library_tests.ibi_gbcg.PTMA.polyply' via 2024-04-29T01:24:54,405 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,406 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,406 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,407 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,407 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,408 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,408 even if it does not contain any `.py` files. 2024-04-29T01:24:54,409 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,409 directory, all directories are treated like packages. 2024-04-29T01:24:54,409 ******************************************************************************** 2024-04-29T01:24:54,410 !! 2024-04-29T01:24:54,410 check.warn(importable) 2024-04-29T01:24:54,411 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.PEL' is absent from the `packages` configuration. 2024-04-29T01:24:54,411 !! 2024-04-29T01:24:54,412 ******************************************************************************** 2024-04-29T01:24:54,412 ############################ 2024-04-29T01:24:54,412 # Package would be ignored # 2024-04-29T01:24:54,413 ############################ 2024-04-29T01:24:54,413 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEL' as an importable package[^1], 2024-04-29T01:24:54,413 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,414 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,414 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.PEL' is explicitly added 2024-04-29T01:24:54,414 to the `packages` configuration field. 2024-04-29T01:24:54,415 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,415 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,416 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,416 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,417 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,418 If you don't want 'polyply.tests.test_data.library_tests.martini2.PEL' to be distributed and are 2024-04-29T01:24:54,418 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.PEL' via 2024-04-29T01:24:54,418 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,419 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,419 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,420 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,420 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,421 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,422 even if it does not contain any `.py` files. 2024-04-29T01:24:54,422 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,422 directory, all directories are treated like packages. 2024-04-29T01:24:54,423 ******************************************************************************** 2024-04-29T01:24:54,423 !! 2024-04-29T01:24:54,424 check.warn(importable) 2024-04-29T01:24:54,424 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,424 !! 2024-04-29T01:24:54,425 ******************************************************************************** 2024-04-29T01:24:54,425 ############################ 2024-04-29T01:24:54,425 # Package would be ignored # 2024-04-29T01:24:54,426 ############################ 2024-04-29T01:24:54,426 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' as an importable package[^1], 2024-04-29T01:24:54,426 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,427 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,427 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' is explicitly added 2024-04-29T01:24:54,428 to the `packages` configuration field. 2024-04-29T01:24:54,428 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,429 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,429 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,430 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,430 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,431 If you don't want 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' to be distributed and are 2024-04-29T01:24:54,431 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' via 2024-04-29T01:24:54,431 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,432 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,432 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,433 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,434 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,435 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,435 even if it does not contain any `.py` files. 2024-04-29T01:24:54,435 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,435 directory, all directories are treated like packages. 2024-04-29T01:24:54,436 ******************************************************************************** 2024-04-29T01:24:54,436 !! 2024-04-29T01:24:54,437 check.warn(importable) 2024-04-29T01:24:54,437 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,437 !! 2024-04-29T01:24:54,438 ******************************************************************************** 2024-04-29T01:24:54,438 ############################ 2024-04-29T01:24:54,439 # Package would be ignored # 2024-04-29T01:24:54,439 ############################ 2024-04-29T01:24:54,439 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' as an importable package[^1], 2024-04-29T01:24:54,440 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,440 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,441 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' is explicitly added 2024-04-29T01:24:54,441 to the `packages` configuration field. 2024-04-29T01:24:54,442 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,442 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,442 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,443 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,443 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,444 If you don't want 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' to be distributed and are 2024-04-29T01:24:54,444 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' via 2024-04-29T01:24:54,445 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,445 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,445 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,446 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,447 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,447 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,448 even if it does not contain any `.py` files. 2024-04-29T01:24:54,448 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,448 directory, all directories are treated like packages. 2024-04-29T01:24:54,449 ******************************************************************************** 2024-04-29T01:24:54,449 !! 2024-04-29T01:24:54,450 check.warn(importable) 2024-04-29T01:24:54,450 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.PEO_PE' is absent from the `packages` configuration. 2024-04-29T01:24:54,450 !! 2024-04-29T01:24:54,451 ******************************************************************************** 2024-04-29T01:24:54,451 ############################ 2024-04-29T01:24:54,452 # Package would be ignored # 2024-04-29T01:24:54,452 ############################ 2024-04-29T01:24:54,452 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO_PE' as an importable package[^1], 2024-04-29T01:24:54,453 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,453 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,454 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO_PE' is explicitly added 2024-04-29T01:24:54,454 to the `packages` configuration field. 2024-04-29T01:24:54,455 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,455 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,455 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,456 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,457 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,457 If you don't want 'polyply.tests.test_data.library_tests.martini2.PEO_PE' to be distributed and are 2024-04-29T01:24:54,457 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.PEO_PE' via 2024-04-29T01:24:54,458 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,458 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,458 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,459 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,460 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,461 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,461 even if it does not contain any `.py` files. 2024-04-29T01:24:54,461 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,462 directory, all directories are treated like packages. 2024-04-29T01:24:54,462 ******************************************************************************** 2024-04-29T01:24:54,463 !! 2024-04-29T01:24:54,463 check.warn(importable) 2024-04-29T01:24:54,463 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,464 !! 2024-04-29T01:24:54,464 ******************************************************************************** 2024-04-29T01:24:54,464 ############################ 2024-04-29T01:24:54,465 # Package would be ignored # 2024-04-29T01:24:54,465 ############################ 2024-04-29T01:24:54,465 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' as an importable package[^1], 2024-04-29T01:24:54,466 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,466 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,467 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' is explicitly added 2024-04-29T01:24:54,467 to the `packages` configuration field. 2024-04-29T01:24:54,468 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,468 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,468 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,469 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,470 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,470 If you don't want 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' to be distributed and are 2024-04-29T01:24:54,471 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' via 2024-04-29T01:24:54,471 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,471 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,471 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,472 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,473 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,474 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,474 even if it does not contain any `.py` files. 2024-04-29T01:24:54,475 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,475 directory, all directories are treated like packages. 2024-04-29T01:24:54,475 ******************************************************************************** 2024-04-29T01:24:54,476 !! 2024-04-29T01:24:54,476 check.warn(importable) 2024-04-29T01:24:54,476 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.PS.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,477 !! 2024-04-29T01:24:54,477 ******************************************************************************** 2024-04-29T01:24:54,478 ############################ 2024-04-29T01:24:54,478 # Package would be ignored # 2024-04-29T01:24:54,478 ############################ 2024-04-29T01:24:54,479 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PS.polyply' as an importable package[^1], 2024-04-29T01:24:54,479 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,480 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,480 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.PS.polyply' is explicitly added 2024-04-29T01:24:54,480 to the `packages` configuration field. 2024-04-29T01:24:54,481 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,481 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,482 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,482 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,483 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,484 If you don't want 'polyply.tests.test_data.library_tests.martini2.PS.polyply' to be distributed and are 2024-04-29T01:24:54,484 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.PS.polyply' via 2024-04-29T01:24:54,484 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,484 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,485 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,485 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,486 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,487 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,487 even if it does not contain any `.py` files. 2024-04-29T01:24:54,488 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,488 directory, all directories are treated like packages. 2024-04-29T01:24:54,488 ******************************************************************************** 2024-04-29T01:24:54,489 !! 2024-04-29T01:24:54,489 check.warn(importable) 2024-04-29T01:24:54,490 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.ssDNA' is absent from the `packages` configuration. 2024-04-29T01:24:54,490 !! 2024-04-29T01:24:54,491 ******************************************************************************** 2024-04-29T01:24:54,491 ############################ 2024-04-29T01:24:54,491 # Package would be ignored # 2024-04-29T01:24:54,491 ############################ 2024-04-29T01:24:54,492 Python recognizes 'polyply.tests.test_data.library_tests.martini2.ssDNA' as an importable package[^1], 2024-04-29T01:24:54,492 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,493 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,493 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.ssDNA' is explicitly added 2024-04-29T01:24:54,493 to the `packages` configuration field. 2024-04-29T01:24:54,494 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,494 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,495 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,495 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,496 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,497 If you don't want 'polyply.tests.test_data.library_tests.martini2.ssDNA' to be distributed and are 2024-04-29T01:24:54,497 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.ssDNA' via 2024-04-29T01:24:54,497 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,497 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,498 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,498 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,499 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,500 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,500 even if it does not contain any `.py` files. 2024-04-29T01:24:54,501 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,501 directory, all directories are treated like packages. 2024-04-29T01:24:54,501 ******************************************************************************** 2024-04-29T01:24:54,502 !! 2024-04-29T01:24:54,502 check.warn(importable) 2024-04-29T01:24:54,502 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,503 !! 2024-04-29T01:24:54,503 ******************************************************************************** 2024-04-29T01:24:54,504 ############################ 2024-04-29T01:24:54,504 # Package would be ignored # 2024-04-29T01:24:54,504 ############################ 2024-04-29T01:24:54,505 Python recognizes 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' as an importable package[^1], 2024-04-29T01:24:54,505 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,506 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,506 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' is explicitly added 2024-04-29T01:24:54,506 to the `packages` configuration field. 2024-04-29T01:24:54,507 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,507 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,507 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,508 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,509 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,509 If you don't want 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' to be distributed and are 2024-04-29T01:24:54,510 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' via 2024-04-29T01:24:54,510 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,510 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,511 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,511 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,512 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,513 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,513 even if it does not contain any `.py` files. 2024-04-29T01:24:54,514 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,514 directory, all directories are treated like packages. 2024-04-29T01:24:54,514 ******************************************************************************** 2024-04-29T01:24:54,515 !! 2024-04-29T01:24:54,515 check.warn(importable) 2024-04-29T01:24:54,515 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,516 !! 2024-04-29T01:24:54,516 ******************************************************************************** 2024-04-29T01:24:54,517 ############################ 2024-04-29T01:24:54,517 # Package would be ignored # 2024-04-29T01:24:54,517 ############################ 2024-04-29T01:24:54,518 Python recognizes 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' as an importable package[^1], 2024-04-29T01:24:54,518 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,519 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,519 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' is explicitly added 2024-04-29T01:24:54,519 to the `packages` configuration field. 2024-04-29T01:24:54,520 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,520 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,521 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,521 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,522 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,523 If you don't want 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' to be distributed and are 2024-04-29T01:24:54,523 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' via 2024-04-29T01:24:54,523 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,524 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,524 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,525 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,525 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,526 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,527 even if it does not contain any `.py` files. 2024-04-29T01:24:54,527 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,527 directory, all directories are treated like packages. 2024-04-29T01:24:54,528 ******************************************************************************** 2024-04-29T01:24:54,528 !! 2024-04-29T01:24:54,529 check.warn(importable) 2024-04-29T01:24:54,529 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,529 !! 2024-04-29T01:24:54,530 ******************************************************************************** 2024-04-29T01:24:54,530 ############################ 2024-04-29T01:24:54,531 # Package would be ignored # 2024-04-29T01:24:54,531 ############################ 2024-04-29T01:24:54,531 Python recognizes 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' as an importable package[^1], 2024-04-29T01:24:54,532 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,532 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,533 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' is explicitly added 2024-04-29T01:24:54,533 to the `packages` configuration field. 2024-04-29T01:24:54,534 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,534 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,534 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,535 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,536 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,536 If you don't want 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' to be distributed and are 2024-04-29T01:24:54,536 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' via 2024-04-29T01:24:54,537 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,537 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,537 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,538 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,539 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,540 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,540 even if it does not contain any `.py` files. 2024-04-29T01:24:54,540 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,541 directory, all directories are treated like packages. 2024-04-29T01:24:54,541 ******************************************************************************** 2024-04-29T01:24:54,542 !! 2024-04-29T01:24:54,542 check.warn(importable) 2024-04-29T01:24:54,542 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,543 !! 2024-04-29T01:24:54,543 ******************************************************************************** 2024-04-29T01:24:54,543 ############################ 2024-04-29T01:24:54,544 # Package would be ignored # 2024-04-29T01:24:54,544 ############################ 2024-04-29T01:24:54,544 Python recognizes 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' as an importable package[^1], 2024-04-29T01:24:54,545 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,545 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,546 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' is explicitly added 2024-04-29T01:24:54,546 to the `packages` configuration field. 2024-04-29T01:24:54,547 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,547 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,547 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,548 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,548 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,549 If you don't want 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' to be distributed and are 2024-04-29T01:24:54,549 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' via 2024-04-29T01:24:54,550 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,550 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,550 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,551 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,552 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,553 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,553 even if it does not contain any `.py` files. 2024-04-29T01:24:54,553 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,553 directory, all directories are treated like packages. 2024-04-29T01:24:54,554 ******************************************************************************** 2024-04-29T01:24:54,554 !! 2024-04-29T01:24:54,555 check.warn(importable) 2024-04-29T01:24:54,555 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,555 !! 2024-04-29T01:24:54,556 ******************************************************************************** 2024-04-29T01:24:54,556 ############################ 2024-04-29T01:24:54,557 # Package would be ignored # 2024-04-29T01:24:54,557 ############################ 2024-04-29T01:24:54,557 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' as an importable package[^1], 2024-04-29T01:24:54,558 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,558 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,559 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' is explicitly added 2024-04-29T01:24:54,559 to the `packages` configuration field. 2024-04-29T01:24:54,559 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,560 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,560 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,561 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,561 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,562 If you don't want 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' to be distributed and are 2024-04-29T01:24:54,562 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' via 2024-04-29T01:24:54,563 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,563 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,563 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,564 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,564 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,565 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,566 even if it does not contain any `.py` files. 2024-04-29T01:24:54,566 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,566 directory, all directories are treated like packages. 2024-04-29T01:24:54,567 ******************************************************************************** 2024-04-29T01:24:54,567 !! 2024-04-29T01:24:54,568 check.warn(importable) 2024-04-29T01:24:54,568 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PE.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,568 !! 2024-04-29T01:24:54,569 ******************************************************************************** 2024-04-29T01:24:54,569 ############################ 2024-04-29T01:24:54,570 # Package would be ignored # 2024-04-29T01:24:54,570 ############################ 2024-04-29T01:24:54,570 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PE.polyply' as an importable package[^1], 2024-04-29T01:24:54,570 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,571 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,571 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PE.polyply' is explicitly added 2024-04-29T01:24:54,572 to the `packages` configuration field. 2024-04-29T01:24:54,573 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,573 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,574 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,574 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,575 If you don't want 'polyply.tests.test_data.library_tests.martini3.PE.polyply' to be distributed and are 2024-04-29T01:24:54,576 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PE.polyply' via 2024-04-29T01:24:54,576 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,576 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,577 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,577 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,578 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,579 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,579 even if it does not contain any `.py` files. 2024-04-29T01:24:54,579 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,580 directory, all directories are treated like packages. 2024-04-29T01:24:54,580 ******************************************************************************** 2024-04-29T01:24:54,581 !! 2024-04-29T01:24:54,581 check.warn(importable) 2024-04-29T01:24:54,581 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,582 !! 2024-04-29T01:24:54,582 ******************************************************************************** 2024-04-29T01:24:54,583 ############################ 2024-04-29T01:24:54,583 # Package would be ignored # 2024-04-29T01:24:54,583 ############################ 2024-04-29T01:24:54,584 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' as an importable package[^1], 2024-04-29T01:24:54,584 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,584 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,585 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' is explicitly added 2024-04-29T01:24:54,585 to the `packages` configuration field. 2024-04-29T01:24:54,586 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,586 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,586 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,587 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,588 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,588 If you don't want 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' to be distributed and are 2024-04-29T01:24:54,589 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' via 2024-04-29T01:24:54,589 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,589 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,590 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,590 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,591 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,592 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,593 even if it does not contain any `.py` files. 2024-04-29T01:24:54,593 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,594 directory, all directories are treated like packages. 2024-04-29T01:24:54,594 ******************************************************************************** 2024-04-29T01:24:54,595 !! 2024-04-29T01:24:54,595 check.warn(importable) 2024-04-29T01:24:54,595 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,596 !! 2024-04-29T01:24:54,597 ******************************************************************************** 2024-04-29T01:24:54,597 ############################ 2024-04-29T01:24:54,598 # Package would be ignored # 2024-04-29T01:24:54,598 ############################ 2024-04-29T01:24:54,598 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' as an importable package[^1], 2024-04-29T01:24:54,599 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,599 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,600 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' is explicitly added 2024-04-29T01:24:54,600 to the `packages` configuration field. 2024-04-29T01:24:54,601 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,601 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,602 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,603 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,603 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,604 If you don't want 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' to be distributed and are 2024-04-29T01:24:54,604 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' via 2024-04-29T01:24:54,605 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,605 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,605 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,606 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,607 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,608 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,609 even if it does not contain any `.py` files. 2024-04-29T01:24:54,609 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,609 directory, all directories are treated like packages. 2024-04-29T01:24:54,610 ******************************************************************************** 2024-04-29T01:24:54,611 !! 2024-04-29T01:24:54,611 check.warn(importable) 2024-04-29T01:24:54,611 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PROT' is absent from the `packages` configuration. 2024-04-29T01:24:54,612 !! 2024-04-29T01:24:54,613 ******************************************************************************** 2024-04-29T01:24:54,613 ############################ 2024-04-29T01:24:54,613 # Package would be ignored # 2024-04-29T01:24:54,614 ############################ 2024-04-29T01:24:54,614 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PROT' as an importable package[^1], 2024-04-29T01:24:54,614 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,615 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,615 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PROT' is explicitly added 2024-04-29T01:24:54,616 to the `packages` configuration field. 2024-04-29T01:24:54,617 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,617 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,618 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,619 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,619 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,620 If you don't want 'polyply.tests.test_data.library_tests.martini3.PROT' to be distributed and are 2024-04-29T01:24:54,620 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PROT' via 2024-04-29T01:24:54,621 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,621 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,621 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,623 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,624 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,625 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,625 even if it does not contain any `.py` files. 2024-04-29T01:24:54,625 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,626 directory, all directories are treated like packages. 2024-04-29T01:24:54,626 ******************************************************************************** 2024-04-29T01:24:54,627 !! 2024-04-29T01:24:54,627 check.warn(importable) 2024-04-29T01:24:54,627 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,628 !! 2024-04-29T01:24:54,629 ******************************************************************************** 2024-04-29T01:24:54,629 ############################ 2024-04-29T01:24:54,629 # Package would be ignored # 2024-04-29T01:24:54,630 ############################ 2024-04-29T01:24:54,630 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' as an importable package[^1], 2024-04-29T01:24:54,630 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,631 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,632 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' is explicitly added 2024-04-29T01:24:54,632 to the `packages` configuration field. 2024-04-29T01:24:54,633 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,633 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,633 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,634 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,635 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,635 If you don't want 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' to be distributed and are 2024-04-29T01:24:54,636 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' via 2024-04-29T01:24:54,636 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,637 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,637 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,638 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,638 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,639 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,640 even if it does not contain any `.py` files. 2024-04-29T01:24:54,640 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,640 directory, all directories are treated like packages. 2024-04-29T01:24:54,641 ******************************************************************************** 2024-04-29T01:24:54,641 !! 2024-04-29T01:24:54,642 check.warn(importable) 2024-04-29T01:24:54,642 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PS.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,642 !! 2024-04-29T01:24:54,643 ******************************************************************************** 2024-04-29T01:24:54,643 ############################ 2024-04-29T01:24:54,644 # Package would be ignored # 2024-04-29T01:24:54,644 ############################ 2024-04-29T01:24:54,644 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PS.polyply' as an importable package[^1], 2024-04-29T01:24:54,645 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,645 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,646 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PS.polyply' is explicitly added 2024-04-29T01:24:54,646 to the `packages` configuration field. 2024-04-29T01:24:54,647 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,647 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,647 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,648 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,649 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,650 If you don't want 'polyply.tests.test_data.library_tests.martini3.PS.polyply' to be distributed and are 2024-04-29T01:24:54,650 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PS.polyply' via 2024-04-29T01:24:54,650 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,651 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,651 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,652 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,652 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,653 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,654 even if it does not contain any `.py` files. 2024-04-29T01:24:54,654 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,654 directory, all directories are treated like packages. 2024-04-29T01:24:54,655 ******************************************************************************** 2024-04-29T01:24:54,655 !! 2024-04-29T01:24:54,656 check.warn(importable) 2024-04-29T01:24:54,656 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,656 !! 2024-04-29T01:24:54,657 ******************************************************************************** 2024-04-29T01:24:54,658 ############################ 2024-04-29T01:24:54,658 # Package would be ignored # 2024-04-29T01:24:54,658 ############################ 2024-04-29T01:24:54,659 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' as an importable package[^1], 2024-04-29T01:24:54,659 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,660 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,660 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' is explicitly added 2024-04-29T01:24:54,660 to the `packages` configuration field. 2024-04-29T01:24:54,661 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,662 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,662 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,663 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,664 If you don't want 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' to be distributed and are 2024-04-29T01:24:54,664 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' via 2024-04-29T01:24:54,664 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,665 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,665 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,666 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,666 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,667 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,668 even if it does not contain any `.py` files. 2024-04-29T01:24:54,668 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,668 directory, all directories are treated like packages. 2024-04-29T01:24:54,669 ******************************************************************************** 2024-04-29T01:24:54,669 !! 2024-04-29T01:24:54,670 check.warn(importable) 2024-04-29T01:24:54,670 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,670 !! 2024-04-29T01:24:54,671 ******************************************************************************** 2024-04-29T01:24:54,671 ############################ 2024-04-29T01:24:54,672 # Package would be ignored # 2024-04-29T01:24:54,672 ############################ 2024-04-29T01:24:54,672 Python recognizes 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' as an importable package[^1], 2024-04-29T01:24:54,673 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,674 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,674 package, please make sure that 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' is explicitly added 2024-04-29T01:24:54,674 to the `packages` configuration field. 2024-04-29T01:24:54,675 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,675 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,676 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,676 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,677 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,678 If you don't want 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' to be distributed and are 2024-04-29T01:24:54,678 already explicitly excluding 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' via 2024-04-29T01:24:54,678 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,679 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,679 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,680 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,681 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,682 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,682 even if it does not contain any `.py` files. 2024-04-29T01:24:54,683 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,683 directory, all directories are treated like packages. 2024-04-29T01:24:54,683 ******************************************************************************** 2024-04-29T01:24:54,684 !! 2024-04-29T01:24:54,684 check.warn(importable) 2024-04-29T01:24:54,685 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PTMA.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,685 !! 2024-04-29T01:24:54,686 ******************************************************************************** 2024-04-29T01:24:54,686 ############################ 2024-04-29T01:24:54,686 # Package would be ignored # 2024-04-29T01:24:54,687 ############################ 2024-04-29T01:24:54,687 Python recognizes 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PTMA.polyply' as an importable package[^1], 2024-04-29T01:24:54,687 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,688 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,688 package, please make sure that 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PTMA.polyply' is explicitly added 2024-04-29T01:24:54,689 to the `packages` configuration field. 2024-04-29T01:24:54,689 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,690 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,690 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,691 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,691 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,692 If you don't want 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PTMA.polyply' to be distributed and are 2024-04-29T01:24:54,692 already explicitly excluding 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PTMA.polyply' via 2024-04-29T01:24:54,693 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,693 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,694 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,694 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,695 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,696 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,696 even if it does not contain any `.py` files. 2024-04-29T01:24:54,697 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,697 directory, all directories are treated like packages. 2024-04-29T01:24:54,697 ******************************************************************************** 2024-04-29T01:24:54,698 !! 2024-04-29T01:24:54,698 check.warn(importable) 2024-04-29T01:24:54,699 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.parmbsc1.DNA' is absent from the `packages` configuration. 2024-04-29T01:24:54,699 !! 2024-04-29T01:24:54,700 ******************************************************************************** 2024-04-29T01:24:54,700 ############################ 2024-04-29T01:24:54,700 # Package would be ignored # 2024-04-29T01:24:54,701 ############################ 2024-04-29T01:24:54,701 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.DNA' as an importable package[^1], 2024-04-29T01:24:54,702 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,702 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,703 package, please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.DNA' is explicitly added 2024-04-29T01:24:54,703 to the `packages` configuration field. 2024-04-29T01:24:54,704 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,704 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,704 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,705 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,706 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,706 If you don't want 'polyply.tests.test_data.library_tests.parmbsc1.DNA' to be distributed and are 2024-04-29T01:24:54,707 already explicitly excluding 'polyply.tests.test_data.library_tests.parmbsc1.DNA' via 2024-04-29T01:24:54,707 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,707 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,708 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,708 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,709 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,710 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,711 even if it does not contain any `.py` files. 2024-04-29T01:24:54,711 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,711 directory, all directories are treated like packages. 2024-04-29T01:24:54,712 ******************************************************************************** 2024-04-29T01:24:54,712 !! 2024-04-29T01:24:54,713 check.warn(importable) 2024-04-29T01:24:54,713 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,713 !! 2024-04-29T01:24:54,714 ******************************************************************************** 2024-04-29T01:24:54,714 ############################ 2024-04-29T01:24:54,715 # Package would be ignored # 2024-04-29T01:24:54,715 ############################ 2024-04-29T01:24:54,715 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' as an importable package[^1], 2024-04-29T01:24:54,716 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,717 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,717 package, please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' is explicitly added 2024-04-29T01:24:54,717 to the `packages` configuration field. 2024-04-29T01:24:54,718 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,718 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,719 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,719 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,720 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,721 If you don't want 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' to be distributed and are 2024-04-29T01:24:54,721 already explicitly excluding 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' via 2024-04-29T01:24:54,721 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,722 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,722 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,723 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,724 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,725 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,725 even if it does not contain any `.py` files. 2024-04-29T01:24:54,726 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,726 directory, all directories are treated like packages. 2024-04-29T01:24:54,726 ******************************************************************************** 2024-04-29T01:24:54,727 !! 2024-04-29T01:24:54,727 check.warn(importable) 2024-04-29T01:24:54,728 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA' is absent from the `packages` configuration. 2024-04-29T01:24:54,728 !! 2024-04-29T01:24:54,729 ******************************************************************************** 2024-04-29T01:24:54,729 ############################ 2024-04-29T01:24:54,729 # Package would be ignored # 2024-04-29T01:24:54,730 ############################ 2024-04-29T01:24:54,730 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA' as an importable package[^1], 2024-04-29T01:24:54,730 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,731 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,732 package, please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA' is explicitly added 2024-04-29T01:24:54,732 to the `packages` configuration field. 2024-04-29T01:24:54,733 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,733 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,733 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,734 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,735 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,736 If you don't want 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA' to be distributed and are 2024-04-29T01:24:54,736 already explicitly excluding 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA' via 2024-04-29T01:24:54,736 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,737 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,737 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,738 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,738 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,739 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,740 even if it does not contain any `.py` files. 2024-04-29T01:24:54,740 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,740 directory, all directories are treated like packages. 2024-04-29T01:24:54,741 ******************************************************************************** 2024-04-29T01:24:54,741 !! 2024-04-29T01:24:54,742 check.warn(importable) 2024-04-29T01:24:54,742 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,743 !! 2024-04-29T01:24:54,743 ******************************************************************************** 2024-04-29T01:24:54,744 ############################ 2024-04-29T01:24:54,744 # Package would be ignored # 2024-04-29T01:24:54,744 ############################ 2024-04-29T01:24:54,745 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA.polyply' as an importable package[^1], 2024-04-29T01:24:54,745 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,746 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,746 package, please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA.polyply' is explicitly added 2024-04-29T01:24:54,746 to the `packages` configuration field. 2024-04-29T01:24:54,747 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,747 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,748 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,748 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,749 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,750 If you don't want 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA.polyply' to be distributed and are 2024-04-29T01:24:54,750 already explicitly excluding 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA.polyply' via 2024-04-29T01:24:54,751 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,751 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,751 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,752 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,753 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,754 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,754 even if it does not contain any `.py` files. 2024-04-29T01:24:54,754 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,755 directory, all directories are treated like packages. 2024-04-29T01:24:54,755 ******************************************************************************** 2024-04-29T01:24:54,756 !! 2024-04-29T01:24:54,757 check.warn(importable) 2024-04-29T01:24:54,757 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.polyply' is absent from the `packages` configuration. 2024-04-29T01:24:54,758 !! 2024-04-29T01:24:54,758 ******************************************************************************** 2024-04-29T01:24:54,759 ############################ 2024-04-29T01:24:54,759 # Package would be ignored # 2024-04-29T01:24:54,759 ############################ 2024-04-29T01:24:54,760 Python recognizes 'polyply.tests.test_data.polyply' as an importable package[^1], 2024-04-29T01:24:54,760 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,761 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,761 package, please make sure that 'polyply.tests.test_data.polyply' is explicitly added 2024-04-29T01:24:54,762 to the `packages` configuration field. 2024-04-29T01:24:54,762 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,763 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,763 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,764 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,765 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,765 If you don't want 'polyply.tests.test_data.polyply' to be distributed and are 2024-04-29T01:24:54,766 already explicitly excluding 'polyply.tests.test_data.polyply' via 2024-04-29T01:24:54,766 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,766 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,767 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,767 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,768 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,769 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,769 even if it does not contain any `.py` files. 2024-04-29T01:24:54,770 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,770 directory, all directories are treated like packages. 2024-04-29T01:24:54,771 ******************************************************************************** 2024-04-29T01:24:54,771 !! 2024-04-29T01:24:54,772 check.warn(importable) 2024-04-29T01:24:54,772 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.simple_seq_files' is absent from the `packages` configuration. 2024-04-29T01:24:54,773 !! 2024-04-29T01:24:54,773 ******************************************************************************** 2024-04-29T01:24:54,774 ############################ 2024-04-29T01:24:54,774 # Package would be ignored # 2024-04-29T01:24:54,774 ############################ 2024-04-29T01:24:54,775 Python recognizes 'polyply.tests.test_data.simple_seq_files' as an importable package[^1], 2024-04-29T01:24:54,775 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:24:54,776 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:24:54,776 package, please make sure that 'polyply.tests.test_data.simple_seq_files' is explicitly added 2024-04-29T01:24:54,776 to the `packages` configuration field. 2024-04-29T01:24:54,777 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:24:54,777 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:24:54,778 instead of `find_packages(...)`/`find:`). 2024-04-29T01:24:54,778 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:24:54,779 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:24:54,780 If you don't want 'polyply.tests.test_data.simple_seq_files' to be distributed and are 2024-04-29T01:24:54,780 already explicitly excluding 'polyply.tests.test_data.simple_seq_files' via 2024-04-29T01:24:54,780 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:24:54,781 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:24:54,781 combination with a more fine grained `package-data` configuration. 2024-04-29T01:24:54,782 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:24:54,782 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:24:54,783 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:24:54,784 even if it does not contain any `.py` files. 2024-04-29T01:24:54,784 On the other hand, currently there is no concept of package data 2024-04-29T01:24:54,784 directory, all directories are treated like packages. 2024-04-29T01:24:54,785 ******************************************************************************** 2024-04-29T01:24:54,786 !! 2024-04-29T01:24:54,786 check.warn(importable) 2024-04-29T01:24:54,786 creating build/lib/polyply/data/2016H66 2024-04-29T01:24:54,787 copying polyply/data/2016H66/chiral_links.ff -> build/lib/polyply/data/2016H66 2024-04-29T01:24:54,787 copying polyply/data/2016H66/citation.bib -> build/lib/polyply/data/2016H66 2024-04-29T01:24:54,787 copying polyply/data/2016H66/polyether_blocks.ff -> build/lib/polyply/data/2016H66 2024-04-29T01:24:54,788 copying polyply/data/2016H66/polyether_links.ff -> build/lib/polyply/data/2016H66 2024-04-29T01:24:54,788 copying polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/lib/polyply/data/2016H66 2024-04-29T01:24:54,789 copying polyply/data/2016H66/polyvinyl_blocks.ff -> build/lib/polyply/data/2016H66 2024-04-29T01:24:54,789 copying polyply/data/2016H66/polyvinyl_links.ff -> build/lib/polyply/data/2016H66 2024-04-29T01:24:54,789 copying polyply/data/2016H66/terminal_blocks.ff -> build/lib/polyply/data/2016H66 2024-04-29T01:24:54,790 creating build/lib/polyply/data/gromos53A6 2024-04-29T01:24:54,790 copying polyply/data/gromos53A6/Hter.ff -> build/lib/polyply/data/gromos53A6 2024-04-29T01:24:54,791 copying polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/lib/polyply/data/gromos53A6 2024-04-29T01:24:54,791 copying polyply/data/gromos53A6/citations.bib -> build/lib/polyply/data/gromos53A6 2024-04-29T01:24:54,791 copying polyply/data/gromos53A6/links.ff -> build/lib/polyply/data/gromos53A6 2024-04-29T01:24:54,792 creating build/lib/polyply/data/ibi_cgm3 2024-04-29T01:24:54,792 copying polyply/data/ibi_cgm3/PTMA.cgm3.ibi.ff -> build/lib/polyply/data/ibi_cgm3 2024-04-29T01:24:54,792 copying polyply/data/ibi_cgm3/citations.bib -> build/lib/polyply/data/ibi_cgm3 2024-04-29T01:24:54,793 creating build/lib/polyply/data/ibi_gbcg 2024-04-29T01:24:54,793 copying polyply/data/ibi_gbcg/PTMA.gbno2.ibi.ff -> build/lib/polyply/data/ibi_gbcg 2024-04-29T01:24:54,793 copying polyply/data/ibi_gbcg/citations.bib -> build/lib/polyply/data/ibi_gbcg 2024-04-29T01:24:54,794 creating build/lib/polyply/data/martini2 2024-04-29T01:24:54,794 copying polyply/data/martini2/DNA_M2.ff -> build/lib/polyply/data/martini2 2024-04-29T01:24:54,794 copying polyply/data/martini2/P3HT.martini.2.itp -> build/lib/polyply/data/martini2 2024-04-29T01:24:54,795 copying polyply/data/martini2/PDADMA.martini.2.itp -> build/lib/polyply/data/martini2 2024-04-29T01:24:54,795 copying polyply/data/martini2/PE.martini.2.itp -> build/lib/polyply/data/martini2 2024-04-29T01:24:54,795 copying polyply/data/martini2/PEO.martini.2.itp -> build/lib/polyply/data/martini2 2024-04-29T01:24:54,796 copying polyply/data/martini2/PP.martini.2.itp -> build/lib/polyply/data/martini2 2024-04-29T01:24:54,796 copying polyply/data/martini2/PS.martini.2.itp -> build/lib/polyply/data/martini2 2024-04-29T01:24:54,796 copying polyply/data/martini2/PSS.martini.2.itp -> build/lib/polyply/data/martini2 2024-04-29T01:24:54,797 copying polyply/data/martini2/citations.bib -> build/lib/polyply/data/martini2 2024-04-29T01:24:54,797 copying polyply/data/martini2/links.ff -> build/lib/polyply/data/martini2 2024-04-29T01:24:54,798 creating build/lib/polyply/data/martini3 2024-04-29T01:24:54,798 copying polyply/data/martini3/P3HT.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,798 copying polyply/data/martini3/PDMS.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,799 copying polyply/data/martini3/PE.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,799 copying polyply/data/martini3/PEL_link.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,799 copying polyply/data/martini3/PEO.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,800 copying polyply/data/martini3/PMA.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,800 copying polyply/data/martini3/PMMA.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,801 copying polyply/data/martini3/PPE.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,801 copying polyply/data/martini3/PS.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,801 copying polyply/data/martini3/PSS.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,802 copying polyply/data/martini3/PS_PEO_link.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,802 copying polyply/data/martini3/PTMA.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,802 copying polyply/data/martini3/PVA.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,803 copying polyply/data/martini3/aminoacids.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,803 copying polyply/data/martini3/cellulose.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,806 copying polyply/data/martini3/citations.bib -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,812 copying polyply/data/martini3/dextran.martini3.ff -> build/lib/polyply/data/martini3 2024-04-29T01:24:54,816 creating build/lib/polyply/data/martini3_beta 2024-04-29T01:24:54,818 copying polyply/data/martini3_beta/PEO.martini.3.itp -> build/lib/polyply/data/martini3_beta 2024-04-29T01:24:54,822 copying polyply/data/martini3_beta/citations.bib -> build/lib/polyply/data/martini3_beta 2024-04-29T01:24:54,826 creating build/lib/polyply/data/oplsaaLigParGen 2024-04-29T01:24:54,828 copying polyply/data/oplsaaLigParGen/CH3.ff -> build/lib/polyply/data/oplsaaLigParGen 2024-04-29T01:24:54,832 copying polyply/data/oplsaaLigParGen/OHter.ff -> build/lib/polyply/data/oplsaaLigParGen 2024-04-29T01:24:54,836 copying polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/lib/polyply/data/oplsaaLigParGen 2024-04-29T01:24:54,840 copying polyply/data/oplsaaLigParGen/PTMA.oplsaa.LigParGen.ff -> build/lib/polyply/data/oplsaaLigParGen 2024-04-29T01:24:54,846 copying polyply/data/oplsaaLigParGen/citations.bib -> build/lib/polyply/data/oplsaaLigParGen 2024-04-29T01:24:54,850 copying polyply/data/oplsaaLigParGen/links.ff -> build/lib/polyply/data/oplsaaLigParGen 2024-04-29T01:24:54,855 copying polyply/data/oplsaaLigParGen/links_PTMA.ff -> build/lib/polyply/data/oplsaaLigParGen 2024-04-29T01:24:54,861 creating build/lib/polyply/data/parmbsc1 2024-04-29T01:24:54,862 copying polyply/data/parmbsc1/citations.bib -> build/lib/polyply/data/parmbsc1 2024-04-29T01:24:54,867 copying polyply/data/parmbsc1/dna_final.ff -> build/lib/polyply/data/parmbsc1 2024-04-29T01:24:54,875 creating build/lib/polyply/tests/test_data 2024-04-29T01:24:54,876 creating build/lib/polyply/tests/test_data/ff 2024-04-29T01:24:54,878 copying polyply/tests/test_data/ff/aminoacids.ff -> build/lib/polyply/tests/test_data/ff 2024-04-29T01:24:54,884 copying polyply/tests/test_data/ff/unknown_file.txt -> build/lib/polyply/tests/test_data/ff 2024-04-29T01:24:54,887 creating build/lib/polyply/tests/test_data/gen_params 2024-04-29T01:24:54,888 creating build/lib/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:54,891 copying polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:54,896 copying polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:54,900 copying polyply/tests/test_data/gen_params/input/PPI.ff -> build/lib/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:54,904 copying polyply/tests/test_data/gen_params/input/PPI.json -> build/lib/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:54,908 copying polyply/tests/test_data/gen_params/input/PS.json -> build/lib/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:54,912 copying polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:54,916 copying polyply/tests/test_data/gen_params/input/removal.ff -> build/lib/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:54,920 copying polyply/tests/test_data/gen_params/input/test.ff -> build/lib/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:54,925 copying polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/lib/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:54,929 copying polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/lib/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:54,933 creating build/lib/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:54,935 copying polyply/tests/test_data/gen_params/logging/ERROR_block.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:54,939 copying polyply/tests/test_data/gen_params/logging/ERROR_link.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:54,943 copying polyply/tests/test_data/gen_params/logging/INFO_block.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:54,947 copying polyply/tests/test_data/gen_params/logging/INFO_link.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:54,952 copying polyply/tests/test_data/gen_params/logging/WARNING_block.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:54,956 copying polyply/tests/test_data/gen_params/logging/WARNING_link.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:54,960 creating build/lib/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:54,961 copying polyply/tests/test_data/gen_params/ref/G3.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:54,966 copying polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:54,972 copying polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:54,977 copying polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:54,982 copying polyply/tests/test_data/gen_params/ref/end.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:54,986 copying polyply/tests/test_data/gen_params/ref/removal.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:54,990 copying polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:54,995 copying polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:54,999 creating build/lib/polyply/tests/test_data/gen_seq 2024-04-29T01:24:55,000 creating build/lib/polyply/tests/test_data/gen_seq/input 2024-04-29T01:24:55,003 copying polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/lib/polyply/tests/test_data/gen_seq/input 2024-04-29T01:24:55,010 creating build/lib/polyply/tests/test_data/gen_seq/output 2024-04-29T01:24:55,012 copying polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/lib/polyply/tests/test_data/gen_seq/output 2024-04-29T01:24:55,017 copying polyply/tests/test_data/gen_seq/output/PPI.json -> build/lib/polyply/tests/test_data/gen_seq/output 2024-04-29T01:24:55,021 copying polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/lib/polyply/tests/test_data/gen_seq/output 2024-04-29T01:24:55,033 copying polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/output 2024-04-29T01:24:55,044 copying polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/lib/polyply/tests/test_data/gen_seq/output 2024-04-29T01:24:55,049 creating build/lib/polyply/tests/test_data/gen_seq/ref 2024-04-29T01:24:55,051 copying polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2024-04-29T01:24:55,056 copying polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2024-04-29T01:24:55,061 copying polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2024-04-29T01:24:55,068 creating build/lib/polyply/tests/test_data/itp 2024-04-29T01:24:55,071 copying polyply/tests/test_data/itp/PEO.itp -> build/lib/polyply/tests/test_data/itp 2024-04-29T01:24:55,076 creating build/lib/polyply/tests/test_data/json 2024-04-29T01:24:55,078 copying polyply/tests/test_data/json/double_branch.json -> build/lib/polyply/tests/test_data/json 2024-04-29T01:24:55,084 copying polyply/tests/test_data/json/fail.json -> build/lib/polyply/tests/test_data/json 2024-04-29T01:24:55,089 copying polyply/tests/test_data/json/hyperbranched.json -> build/lib/polyply/tests/test_data/json 2024-04-29T01:24:55,094 copying polyply/tests/test_data/json/linear.json -> build/lib/polyply/tests/test_data/json 2024-04-29T01:24:55,099 copying polyply/tests/test_data/json/linear_rev.json -> build/lib/polyply/tests/test_data/json 2024-04-29T01:24:55,111 copying polyply/tests/test_data/json/single_branch.json -> build/lib/polyply/tests/test_data/json 2024-04-29T01:24:55,130 creating build/lib/polyply/tests/test_data/library_tests 2024-04-29T01:24:55,133 creating build/lib/polyply/tests/test_data/library_tests/2016H66 2024-04-29T01:24:55,135 creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4 2024-04-29T01:24:55,137 creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2024-04-29T01:24:55,142 copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2024-04-29T01:24:55,167 copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2024-04-29T01:24:55,172 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE 2024-04-29T01:24:55,175 copying polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE 2024-04-29T01:24:55,180 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2024-04-29T01:24:55,182 copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2024-04-29T01:24:55,187 copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2024-04-29T01:24:55,191 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA 2024-04-29T01:24:55,193 copying polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA 2024-04-29T01:24:55,198 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2024-04-29T01:24:55,200 copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2024-04-29T01:24:55,211 copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2024-04-29T01:24:55,219 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP 2024-04-29T01:24:55,222 copying polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP 2024-04-29T01:24:55,230 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2024-04-29T01:24:55,233 copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2024-04-29T01:24:55,241 copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2024-04-29T01:24:55,249 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS 2024-04-29T01:24:55,252 copying polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS 2024-04-29T01:24:55,260 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2024-04-29T01:24:55,262 copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2024-04-29T01:24:55,268 copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2024-04-29T01:24:55,273 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA 2024-04-29T01:24:55,275 copying polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA 2024-04-29T01:24:55,281 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2024-04-29T01:24:55,283 copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2024-04-29T01:24:55,288 copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2024-04-29T01:24:55,293 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6 2024-04-29T01:24:55,295 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT 2024-04-29T01:24:55,297 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2024-04-29T01:24:55,300 copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2024-04-29T01:24:55,307 copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2024-04-29T01:24:55,312 creating build/lib/polyply/tests/test_data/library_tests/ibi_cgm3 2024-04-29T01:24:55,314 creating build/lib/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA 2024-04-29T01:24:55,316 creating build/lib/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply 2024-04-29T01:24:55,318 copying polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply/PTMA.itp -> build/lib/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply 2024-04-29T01:24:55,325 copying polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply 2024-04-29T01:24:55,331 creating build/lib/polyply/tests/test_data/library_tests/ibi_gbcg 2024-04-29T01:24:55,332 creating build/lib/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA 2024-04-29T01:24:55,334 creating build/lib/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply 2024-04-29T01:24:55,337 copying polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply/PTMA.itp -> build/lib/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply 2024-04-29T01:24:55,342 copying polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply 2024-04-29T01:24:55,346 creating build/lib/polyply/tests/test_data/library_tests/martini2 2024-04-29T01:24:55,347 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL 2024-04-29T01:24:55,349 copying polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL 2024-04-29T01:24:55,354 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2024-04-29T01:24:55,356 copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2024-04-29T01:24:55,361 copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2024-04-29T01:24:55,366 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO 2024-04-29T01:24:55,367 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2024-04-29T01:24:55,369 copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2024-04-29T01:24:55,375 copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2024-04-29T01:24:55,379 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE 2024-04-29T01:24:55,381 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE 2024-04-29T01:24:55,385 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2024-04-29T01:24:55,387 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2024-04-29T01:24:55,392 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2024-04-29T01:24:55,396 creating build/lib/polyply/tests/test_data/library_tests/martini2/PS 2024-04-29T01:24:55,397 creating build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2024-04-29T01:24:55,399 copying polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2024-04-29T01:24:55,404 copying polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2024-04-29T01:24:55,408 creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2024-04-29T01:24:55,410 copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2024-04-29T01:24:55,429 copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2024-04-29T01:24:55,435 creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2024-04-29T01:24:55,436 copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2024-04-29T01:24:55,441 copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2024-04-29T01:24:55,465 creating build/lib/polyply/tests/test_data/library_tests/martini3 2024-04-29T01:24:55,466 creating build/lib/polyply/tests/test_data/library_tests/martini3/CEL 2024-04-29T01:24:55,467 creating build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2024-04-29T01:24:55,470 copying polyply/tests/test_data/library_tests/martini3/CEL/polyply/CEL.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2024-04-29T01:24:55,478 copying polyply/tests/test_data/library_tests/martini3/CEL/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2024-04-29T01:24:55,482 creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX 2024-04-29T01:24:55,483 creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2024-04-29T01:24:55,486 copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2024-04-29T01:24:55,491 copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2024-04-29T01:24:55,495 creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT 2024-04-29T01:24:55,496 creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2024-04-29T01:24:55,499 copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2024-04-29T01:24:55,503 copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2024-04-29T01:24:55,507 creating build/lib/polyply/tests/test_data/library_tests/martini3/PDMS 2024-04-29T01:24:55,508 creating build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2024-04-29T01:24:55,510 copying polyply/tests/test_data/library_tests/martini3/PDMS/polyply/PDMS.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2024-04-29T01:24:55,516 copying polyply/tests/test_data/library_tests/martini3/PDMS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2024-04-29T01:24:55,520 creating build/lib/polyply/tests/test_data/library_tests/martini3/PE 2024-04-29T01:24:55,521 creating build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2024-04-29T01:24:55,523 copying polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2024-04-29T01:24:55,528 copying polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2024-04-29T01:24:55,532 creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO 2024-04-29T01:24:55,533 creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2024-04-29T01:24:55,535 copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2024-04-29T01:24:55,540 copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2024-04-29T01:24:55,544 creating build/lib/polyply/tests/test_data/library_tests/martini3/PPE 2024-04-29T01:24:55,545 creating build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2024-04-29T01:24:55,547 copying polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2024-04-29T01:24:55,553 copying polyply/tests/test_data/library_tests/martini3/PPE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2024-04-29T01:24:55,557 creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2024-04-29T01:24:55,559 copying polyply/tests/test_data/library_tests/martini3/PROT/PNt.fasta -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2024-04-29T01:24:55,564 creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2024-04-29T01:24:55,565 copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2024-04-29T01:24:55,582 copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2024-04-29T01:24:55,587 creating build/lib/polyply/tests/test_data/library_tests/martini3/PS 2024-04-29T01:24:55,588 creating build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2024-04-29T01:24:55,590 copying polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2024-04-29T01:24:55,595 copying polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2024-04-29T01:24:55,601 creating build/lib/polyply/tests/test_data/library_tests/martini3/PTMA 2024-04-29T01:24:55,602 creating build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2024-04-29T01:24:55,606 copying polyply/tests/test_data/library_tests/martini3/PTMA/polyply/PTMA.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2024-04-29T01:24:55,613 copying polyply/tests/test_data/library_tests/martini3/PTMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2024-04-29T01:24:55,618 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen 2024-04-29T01:24:55,619 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO 2024-04-29T01:24:55,620 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2024-04-29T01:24:55,622 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2024-04-29T01:24:55,629 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2024-04-29T01:24:55,634 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA 2024-04-29T01:24:55,636 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply 2024-04-29T01:24:55,639 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply/PTMA.itp -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply 2024-04-29T01:24:55,653 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply 2024-04-29T01:24:55,659 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1 2024-04-29T01:24:55,660 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2024-04-29T01:24:55,663 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2024-04-29T01:24:55,676 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2024-04-29T01:24:55,680 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2024-04-29T01:24:55,682 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2024-04-29T01:24:55,700 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2024-04-29T01:24:55,704 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA 2024-04-29T01:24:55,706 copying polyply/tests/test_data/library_tests/parmbsc1/dsDNA/ref.json -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA 2024-04-29T01:24:55,711 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply 2024-04-29T01:24:55,712 copying polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply 2024-04-29T01:24:55,727 copying polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply 2024-04-29T01:24:55,731 creating build/lib/polyply/tests/test_data/polyply 2024-04-29T01:24:55,733 copying polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2024-04-29T01:24:55,738 copying polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2024-04-29T01:24:55,742 copying polyply/tests/test_data/polyply/PE.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2024-04-29T01:24:55,747 copying polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2024-04-29T01:24:55,752 copying polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2024-04-29T01:24:55,756 copying polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/polyply 2024-04-29T01:24:55,761 copying polyply/tests/test_data/polyply/PP.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2024-04-29T01:24:55,766 copying polyply/tests/test_data/polyply/PS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2024-04-29T01:24:55,771 copying polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2024-04-29T01:24:55,776 creating build/lib/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:55,777 copying polyply/tests/test_data/simple_seq_files/test.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:55,782 copying polyply/tests/test_data/simple_seq_files/test.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:55,786 copying polyply/tests/test_data/simple_seq_files/test.txt -> build/lib/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:55,791 copying polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:55,797 copying polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:55,803 copying polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:55,808 copying polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:55,813 copying polyply/tests/test_data/simple_seq_files/test_ig_warning.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:55,818 copying polyply/tests/test_data/simple_seq_files/test_protein.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:55,824 creating build/lib/polyply/tests/test_data/struc_build 2024-04-29T01:24:55,826 copying polyply/tests/test_data/struc_build/PEO.bld -> build/lib/polyply/tests/test_data/struc_build 2024-04-29T01:24:55,832 copying polyply/tests/test_data/struc_build/PEO.itp -> build/lib/polyply/tests/test_data/struc_build 2024-04-29T01:24:55,836 copying polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/lib/polyply/tests/test_data/struc_build 2024-04-29T01:24:55,844 copying polyply/tests/test_data/struc_build/system.top -> build/lib/polyply/tests/test_data/struc_build 2024-04-29T01:24:55,848 creating build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:55,850 copying polyply/tests/test_data/topology_test/W.itp -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:55,854 copying polyply/tests/test_data/topology_test/cog.gro -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:55,858 copying polyply/tests/test_data/topology_test/cog_missing.gro -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:55,863 copying polyply/tests/test_data/topology_test/complete.gro -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:55,869 copying polyply/tests/test_data/topology_test/fail.gro -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:55,888 copying polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:55,934 copying polyply/tests/test_data/topology_test/meta.gro -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:55,953 copying polyply/tests/test_data/topology_test/molecule_0.itp -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:55,980 copying polyply/tests/test_data/topology_test/pdb.top -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:55,997 copying polyply/tests/test_data/topology_test/system.top -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:56,003 copying polyply/tests/test_data/topology_test/test.bld -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:56,018 copying polyply/tests/test_data/topology_test/test.gro -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:56,036 copying polyply/tests/test_data/topology_test/test.itp -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:56,048 copying polyply/tests/test_data/topology_test/test.pdb -> build/lib/polyply/tests/test_data/topology_test 2024-04-29T01:24:56,304 running build_scripts 2024-04-29T01:24:56,305 creating build/scripts-3.7 2024-04-29T01:24:56,307 copying and adjusting bin/polyply -> build/scripts-3.7 2024-04-29T01:24:56,313 changing mode of build/scripts-3.7/polyply from 644 to 755 2024-04-29T01:24:56,315 installing to build/bdist.linux-armv7l/wheel 2024-04-29T01:24:56,315 running install 2024-04-29T01:24:56,451 [pbr] Generating AUTHORS 2024-04-29T01:24:56,479 [pbr] AUTHORS complete (0.0s) 2024-04-29T01:24:56,480 running install_lib 2024-04-29T01:24:56,517 creating build/bdist.linux-armv7l 2024-04-29T01:24:56,518 creating build/bdist.linux-armv7l/wheel 2024-04-29T01:24:56,523 creating build/bdist.linux-armv7l/wheel/polyply 2024-04-29T01:24:56,527 creating build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:56,530 copying build/lib/polyply/tests/test_itp_files.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:56,535 copying build/lib/polyply/tests/test_restraints.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:56,539 copying build/lib/polyply/tests/test_backmap.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:56,542 copying build/lib/polyply/tests/test_lib_files.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:56,547 copying build/lib/polyply/tests/test_persistence.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:56,551 copying build/lib/polyply/tests/test_gen_params.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:56,556 copying build/lib/polyply/tests/test_map_to_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:56,561 copying build/lib/polyply/tests/test_linalg.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:56,565 copying build/lib/polyply/tests/test_meta_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:56,571 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data 2024-04-29T01:24:56,575 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params 2024-04-29T01:24:56,578 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:56,580 copying build/lib/polyply/tests/test_data/gen_params/logging/INFO_link.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:56,584 copying build/lib/polyply/tests/test_data/gen_params/logging/WARNING_link.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:56,588 copying build/lib/polyply/tests/test_data/gen_params/logging/ERROR_link.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:56,592 copying build/lib/polyply/tests/test_data/gen_params/logging/INFO_block.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:56,595 copying build/lib/polyply/tests/test_data/gen_params/logging/WARNING_block.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:56,599 copying build/lib/polyply/tests/test_data/gen_params/logging/ERROR_block.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2024-04-29T01:24:56,604 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:56,606 copying build/lib/polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:56,610 copying build/lib/polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:56,614 copying build/lib/polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:56,618 copying build/lib/polyply/tests/test_data/gen_params/input/PPI.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:56,623 copying build/lib/polyply/tests/test_data/gen_params/input/test.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:56,627 copying build/lib/polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:56,631 copying build/lib/polyply/tests/test_data/gen_params/input/PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:56,635 copying build/lib/polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:56,638 copying build/lib/polyply/tests/test_data/gen_params/input/PPI.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:56,642 copying build/lib/polyply/tests/test_data/gen_params/input/removal.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2024-04-29T01:24:56,647 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:56,649 copying build/lib/polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:56,654 copying build/lib/polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:56,659 copying build/lib/polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:56,663 copying build/lib/polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:56,667 copying build/lib/polyply/tests/test_data/gen_params/ref/removal.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:56,670 copying build/lib/polyply/tests/test_data/gen_params/ref/G3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:56,674 copying build/lib/polyply/tests/test_data/gen_params/ref/end.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:56,678 copying build/lib/polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2024-04-29T01:24:56,683 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp 2024-04-29T01:24:56,685 copying build/lib/polyply/tests/test_data/itp/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp 2024-04-29T01:24:56,692 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2024-04-29T01:24:56,694 copying build/lib/polyply/tests/test_data/json/single_branch.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2024-04-29T01:24:56,701 copying build/lib/polyply/tests/test_data/json/fail.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2024-04-29T01:24:56,708 copying build/lib/polyply/tests/test_data/json/double_branch.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2024-04-29T01:24:56,712 copying build/lib/polyply/tests/test_data/json/linear.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2024-04-29T01:24:56,715 copying build/lib/polyply/tests/test_data/json/linear_rev.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2024-04-29T01:24:56,719 copying build/lib/polyply/tests/test_data/json/hyperbranched.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2024-04-29T01:24:56,724 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:56,726 copying build/lib/polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:56,730 copying build/lib/polyply/tests/test_data/simple_seq_files/test_protein.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:56,733 copying build/lib/polyply/tests/test_data/simple_seq_files/test.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:56,737 copying build/lib/polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:56,741 copying build/lib/polyply/tests/test_data/simple_seq_files/test.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:56,744 copying build/lib/polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:56,748 copying build/lib/polyply/tests/test_data/simple_seq_files/test_ig_warning.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:56,752 copying build/lib/polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:56,756 copying build/lib/polyply/tests/test_data/simple_seq_files/test.txt -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2024-04-29T01:24:56,760 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2024-04-29T01:24:56,762 copying build/lib/polyply/tests/test_data/ff/unknown_file.txt -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2024-04-29T01:24:56,766 copying build/lib/polyply/tests/test_data/ff/aminoacids.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2024-04-29T01:24:56,772 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2024-04-29T01:24:56,774 copying build/lib/polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2024-04-29T01:24:56,779 copying build/lib/polyply/tests/test_data/polyply/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2024-04-29T01:24:56,783 copying build/lib/polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2024-04-29T01:24:56,787 copying build/lib/polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2024-04-29T01:24:56,790 copying build/lib/polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2024-04-29T01:24:56,795 copying build/lib/polyply/tests/test_data/polyply/PE.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2024-04-29T01:24:56,799 copying build/lib/polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2024-04-29T01:24:56,803 copying build/lib/polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2024-04-29T01:24:56,807 copying build/lib/polyply/tests/test_data/polyply/PP.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2024-04-29T01:24:56,812 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2024-04-29T01:24:56,813 copying build/lib/polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2024-04-29T01:24:56,824 copying build/lib/polyply/tests/test_data/struc_build/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2024-04-29T01:24:56,829 copying build/lib/polyply/tests/test_data/struc_build/system.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2024-04-29T01:24:56,833 copying build/lib/polyply/tests/test_data/struc_build/PEO.bld -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2024-04-29T01:24:56,838 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests 2024-04-29T01:24:56,842 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6 2024-04-29T01:24:56,845 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT 2024-04-29T01:24:56,849 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2024-04-29T01:24:56,851 copying build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2024-04-29T01:24:56,855 copying build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2024-04-29T01:24:56,864 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_gbcg 2024-04-29T01:24:56,868 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA 2024-04-29T01:24:56,874 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply 2024-04-29T01:24:56,878 copying build/lib/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply 2024-04-29T01:24:56,886 copying build/lib/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply/PTMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply 2024-04-29T01:24:56,895 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1 2024-04-29T01:24:56,901 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/dsDNA 2024-04-29T01:24:56,906 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/dsDNA 2024-04-29T01:24:56,913 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply 2024-04-29T01:24:56,916 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply 2024-04-29T01:24:56,930 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply 2024-04-29T01:24:56,936 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2024-04-29T01:24:56,939 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2024-04-29T01:24:56,945 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2024-04-29T01:24:56,963 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2024-04-29T01:24:56,965 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2024-04-29T01:24:56,984 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2024-04-29T01:24:56,990 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen 2024-04-29T01:24:56,994 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA 2024-04-29T01:24:56,998 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply 2024-04-29T01:24:57,001 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply 2024-04-29T01:24:57,005 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply/PTMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply 2024-04-29T01:24:57,019 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO 2024-04-29T01:24:57,022 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2024-04-29T01:24:57,024 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2024-04-29T01:24:57,030 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2024-04-29T01:24:57,035 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_cgm3 2024-04-29T01:24:57,038 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA 2024-04-29T01:24:57,041 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply 2024-04-29T01:24:57,043 copying build/lib/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply 2024-04-29T01:24:57,047 copying build/lib/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply/PTMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply 2024-04-29T01:24:57,054 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2 2024-04-29T01:24:57,056 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS 2024-04-29T01:24:57,059 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2024-04-29T01:24:57,062 copying build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2024-04-29T01:24:57,066 copying build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2024-04-29T01:24:57,071 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL 2024-04-29T01:24:57,072 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL 2024-04-29T01:24:57,078 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2024-04-29T01:24:57,079 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2024-04-29T01:24:57,083 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2024-04-29T01:24:57,093 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO 2024-04-29T01:24:57,096 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2024-04-29T01:24:57,098 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2024-04-29T01:24:57,103 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2024-04-29T01:24:57,108 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2024-04-29T01:24:57,110 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2024-04-29T01:24:57,131 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2024-04-29T01:24:57,133 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2024-04-29T01:24:57,152 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2024-04-29T01:24:57,156 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2024-04-29T01:24:57,163 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE 2024-04-29T01:24:57,166 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2024-04-29T01:24:57,171 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2024-04-29T01:24:57,178 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2024-04-29T01:24:57,183 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE 2024-04-29T01:24:57,188 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3 2024-04-29T01:24:57,190 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PDMS 2024-04-29T01:24:57,194 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2024-04-29T01:24:57,196 copying build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply/PDMS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2024-04-29T01:24:57,201 copying build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2024-04-29T01:24:57,205 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS 2024-04-29T01:24:57,208 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2024-04-29T01:24:57,210 copying build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2024-04-29T01:24:57,214 copying build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2024-04-29T01:24:57,219 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA 2024-04-29T01:24:57,222 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2024-04-29T01:24:57,224 copying build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2024-04-29T01:24:57,228 copying build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply/PTMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2024-04-29T01:24:57,234 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE 2024-04-29T01:24:57,237 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2024-04-29T01:24:57,239 copying build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2024-04-29T01:24:57,243 copying build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2024-04-29T01:24:57,248 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2024-04-29T01:24:57,251 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2024-04-29T01:24:57,253 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2024-04-29T01:24:57,257 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2024-04-29T01:24:57,271 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/PNt.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2024-04-29T01:24:57,276 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX 2024-04-29T01:24:57,279 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2024-04-29T01:24:57,281 copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2024-04-29T01:24:57,285 copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2024-04-29T01:24:57,290 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO 2024-04-29T01:24:57,293 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2024-04-29T01:24:57,295 copying build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2024-04-29T01:24:57,299 copying build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2024-04-29T01:24:57,304 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT 2024-04-29T01:24:57,307 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2024-04-29T01:24:57,309 copying build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2024-04-29T01:24:57,313 copying build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2024-04-29T01:24:57,318 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE 2024-04-29T01:24:57,321 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2024-04-29T01:24:57,324 copying build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2024-04-29T01:24:57,334 copying build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2024-04-29T01:24:57,353 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL 2024-04-29T01:24:57,358 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2024-04-29T01:24:57,362 copying build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2024-04-29T01:24:57,369 copying build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply/CEL.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2024-04-29T01:24:57,382 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66 2024-04-29T01:24:57,389 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA 2024-04-29T01:24:57,395 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA 2024-04-29T01:24:57,406 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2024-04-29T01:24:57,408 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2024-04-29T01:24:57,413 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2024-04-29T01:24:57,418 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS 2024-04-29T01:24:57,419 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS 2024-04-29T01:24:57,425 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2024-04-29T01:24:57,426 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2024-04-29T01:24:57,431 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2024-04-29T01:24:57,436 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP 2024-04-29T01:24:57,438 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP 2024-04-29T01:24:57,443 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2024-04-29T01:24:57,445 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2024-04-29T01:24:57,449 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2024-04-29T01:24:57,454 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE 2024-04-29T01:24:57,457 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2024-04-29T01:24:57,459 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2024-04-29T01:24:57,463 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2024-04-29T01:24:57,467 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE 2024-04-29T01:24:57,471 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA 2024-04-29T01:24:57,474 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2024-04-29T01:24:57,476 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2024-04-29T01:24:57,480 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2024-04-29T01:24:57,484 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA 2024-04-29T01:24:57,489 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4 2024-04-29T01:24:57,492 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2024-04-29T01:24:57,494 copying build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2024-04-29T01:24:57,499 copying build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2024-04-29T01:24:57,505 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,507 copying build/lib/polyply/tests/test_data/topology_test/pdb.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,511 copying build/lib/polyply/tests/test_data/topology_test/cog_missing.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,515 copying build/lib/polyply/tests/test_data/topology_test/cog.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,518 copying build/lib/polyply/tests/test_data/topology_test/complete.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,522 copying build/lib/polyply/tests/test_data/topology_test/W.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,526 copying build/lib/polyply/tests/test_data/topology_test/test.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,529 copying build/lib/polyply/tests/test_data/topology_test/test.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,533 copying build/lib/polyply/tests/test_data/topology_test/system.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,540 copying build/lib/polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,575 copying build/lib/polyply/tests/test_data/topology_test/test.bld -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,579 copying build/lib/polyply/tests/test_data/topology_test/test.pdb -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,631 copying build/lib/polyply/tests/test_data/topology_test/meta.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,635 copying build/lib/polyply/tests/test_data/topology_test/molecule_0.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,645 copying build/lib/polyply/tests/test_data/topology_test/fail.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2024-04-29T01:24:57,650 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq 2024-04-29T01:24:57,708 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2024-04-29T01:24:57,710 copying build/lib/polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2024-04-29T01:24:57,720 copying build/lib/polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2024-04-29T01:24:57,724 copying build/lib/polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2024-04-29T01:24:57,735 copying build/lib/polyply/tests/test_data/gen_seq/output/PPI.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2024-04-29T01:24:57,738 copying build/lib/polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2024-04-29T01:24:57,743 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input 2024-04-29T01:24:57,745 copying build/lib/polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input 2024-04-29T01:24:57,753 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2024-04-29T01:24:57,755 copying build/lib/polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2024-04-29T01:24:57,759 copying build/lib/polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2024-04-29T01:24:57,763 copying build/lib/polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2024-04-29T01:24:57,769 copying build/lib/polyply/tests/test_polyply_input.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,774 copying build/lib/polyply/tests/test_nb_engine.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,779 copying build/lib/polyply/tests/example_fixtures.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,782 copying build/lib/polyply/tests/test_load_library.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,786 copying build/lib/polyply/tests/test_build_system.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,791 copying build/lib/polyply/tests/test_annotate_lingads.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,796 copying build/lib/polyply/tests/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,799 copying build/lib/polyply/tests/test_graph_utils.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,803 copying build/lib/polyply/tests/test_ff_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,807 copying build/lib/polyply/tests/test_topology.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,813 copying build/lib/polyply/tests/test_gen_coords.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,817 copying build/lib/polyply/tests/test_gen_coords_logic.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,822 copying build/lib/polyply/tests/test_generate_templates.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,827 copying build/lib/polyply/tests/test_optimize_geometry.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,832 copying build/lib/polyply/tests/test_simple_seq_parsers.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,836 copying build/lib/polyply/tests/test_apply_links.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,842 copying build/lib/polyply/tests/test_top_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,846 copying build/lib/polyply/tests/test_residue_check.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,851 copying build/lib/polyply/tests/test_logging.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,854 copying build/lib/polyply/tests/test_build_file_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,859 copying build/lib/polyply/tests/test_vs_builder.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,863 copying build/lib/polyply/tests/test_gen_dna.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,866 copying build/lib/polyply/tests/test_gen_seq.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,871 copying build/lib/polyply/tests/test_random_walk.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2024-04-29T01:24:57,875 copying build/lib/polyply/__init__.py -> build/bdist.linux-armv7l/wheel/polyply 2024-04-29T01:24:57,881 creating build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,883 copying build/lib/polyply/src/gen_seq.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,887 copying build/lib/polyply/src/load_library.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,892 copying build/lib/polyply/src/logging.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,895 copying build/lib/polyply/src/random_walk.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,900 copying build/lib/polyply/src/minimizer.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,904 copying build/lib/polyply/src/nonbond_engine.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,909 copying build/lib/polyply/src/topology.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,914 copying build/lib/polyply/src/persistence.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,919 copying build/lib/polyply/src/ff_parser_sub.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,923 copying build/lib/polyply/src/backmap.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,927 copying build/lib/polyply/src/build_file_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,931 copying build/lib/polyply/src/annotate_ligands.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,935 copying build/lib/polyply/src/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,939 copying build/lib/polyply/src/generate_templates.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,943 copying build/lib/polyply/src/meta_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,948 copying build/lib/polyply/src/processor.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,952 copying build/lib/polyply/src/simple_seq_parsers.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,956 copying build/lib/polyply/src/linalg_functions.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,961 copying build/lib/polyply/src/check_residue_equivalence.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,964 copying build/lib/polyply/src/top_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,969 copying build/lib/polyply/src/apply_modifications.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,973 copying build/lib/polyply/src/gen_dna.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,977 copying build/lib/polyply/src/virtual_site_builder.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,982 copying build/lib/polyply/src/polyply_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,986 copying build/lib/polyply/src/graph_utils.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,991 copying build/lib/polyply/src/restraints.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,995 copying build/lib/polyply/src/build_system.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:57,999 copying build/lib/polyply/src/gen_itp.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:58,004 copying build/lib/polyply/src/map_to_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:58,008 copying build/lib/polyply/src/gen_coords.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:58,013 copying build/lib/polyply/src/apply_links.py -> build/bdist.linux-armv7l/wheel/polyply/src 2024-04-29T01:24:58,020 creating build/bdist.linux-armv7l/wheel/polyply/data 2024-04-29T01:24:58,023 creating build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2024-04-29T01:24:58,025 copying build/lib/polyply/data/gromos53A6/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2024-04-29T01:24:58,029 copying build/lib/polyply/data/gromos53A6/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2024-04-29T01:24:58,033 copying build/lib/polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2024-04-29T01:24:58,037 copying build/lib/polyply/data/gromos53A6/Hter.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2024-04-29T01:24:58,042 creating build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2024-04-29T01:24:58,044 copying build/lib/polyply/data/martini3_beta/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2024-04-29T01:24:58,048 copying build/lib/polyply/data/martini3_beta/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2024-04-29T01:24:58,053 creating build/bdist.linux-armv7l/wheel/polyply/data/ibi_gbcg 2024-04-29T01:24:58,055 copying build/lib/polyply/data/ibi_gbcg/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/ibi_gbcg 2024-04-29T01:24:58,058 copying build/lib/polyply/data/ibi_gbcg/PTMA.gbno2.ibi.ff -> build/bdist.linux-armv7l/wheel/polyply/data/ibi_gbcg 2024-04-29T01:24:58,063 creating build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2024-04-29T01:24:58,065 copying build/lib/polyply/data/parmbsc1/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2024-04-29T01:24:58,076 copying build/lib/polyply/data/parmbsc1/dna_final.ff -> build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2024-04-29T01:24:58,084 copying build/lib/polyply/data/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/data 2024-04-29T01:24:58,089 creating build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2024-04-29T01:24:58,091 copying build/lib/polyply/data/oplsaaLigParGen/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2024-04-29T01:24:58,095 copying build/lib/polyply/data/oplsaaLigParGen/PTMA.oplsaa.LigParGen.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2024-04-29T01:24:58,101 copying build/lib/polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2024-04-29T01:24:58,104 copying build/lib/polyply/data/oplsaaLigParGen/CH3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2024-04-29T01:24:58,108 copying build/lib/polyply/data/oplsaaLigParGen/OHter.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2024-04-29T01:24:58,112 copying build/lib/polyply/data/oplsaaLigParGen/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2024-04-29T01:24:58,116 copying build/lib/polyply/data/oplsaaLigParGen/links_PTMA.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2024-04-29T01:24:58,122 creating build/bdist.linux-armv7l/wheel/polyply/data/ibi_cgm3 2024-04-29T01:24:58,124 copying build/lib/polyply/data/ibi_cgm3/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/ibi_cgm3 2024-04-29T01:24:58,128 copying build/lib/polyply/data/ibi_cgm3/PTMA.cgm3.ibi.ff -> build/bdist.linux-armv7l/wheel/polyply/data/ibi_cgm3 2024-04-29T01:24:58,133 creating build/bdist.linux-armv7l/wheel/polyply/data/martini2 2024-04-29T01:24:58,135 copying build/lib/polyply/data/martini2/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2024-04-29T01:24:58,139 copying build/lib/polyply/data/martini2/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2024-04-29T01:24:58,143 copying build/lib/polyply/data/martini2/PEO.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2024-04-29T01:24:58,147 copying build/lib/polyply/data/martini2/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2024-04-29T01:24:58,151 copying build/lib/polyply/data/martini2/PDADMA.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2024-04-29T01:24:58,154 copying build/lib/polyply/data/martini2/PE.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2024-04-29T01:24:58,158 copying build/lib/polyply/data/martini2/DNA_M2.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2024-04-29T01:24:58,163 copying build/lib/polyply/data/martini2/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2024-04-29T01:24:58,167 copying build/lib/polyply/data/martini2/PSS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2024-04-29T01:24:58,171 copying build/lib/polyply/data/martini2/PP.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2024-04-29T01:24:58,177 creating build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,179 copying build/lib/polyply/data/martini3/PDMS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,404 copying build/lib/polyply/data/martini3/PEO.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,408 copying build/lib/polyply/data/martini3/PTMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,412 copying build/lib/polyply/data/martini3/cellulose.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,416 copying build/lib/polyply/data/martini3/PSS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,420 copying build/lib/polyply/data/martini3/PPE.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,425 copying build/lib/polyply/data/martini3/PS_PEO_link.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,429 copying build/lib/polyply/data/martini3/PMMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,434 copying build/lib/polyply/data/martini3/P3HT.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,438 copying build/lib/polyply/data/martini3/PS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,443 copying build/lib/polyply/data/martini3/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,448 copying build/lib/polyply/data/martini3/PVA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,454 copying build/lib/polyply/data/martini3/PE.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,459 copying build/lib/polyply/data/martini3/dextran.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,464 copying build/lib/polyply/data/martini3/aminoacids.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,470 copying build/lib/polyply/data/martini3/PEL_link.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,474 copying build/lib/polyply/data/martini3/PMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2024-04-29T01:24:58,480 creating build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2024-04-29T01:24:58,482 copying build/lib/polyply/data/2016H66/polyvinyl_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2024-04-29T01:24:58,487 copying build/lib/polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2024-04-29T01:24:58,492 copying build/lib/polyply/data/2016H66/citation.bib -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2024-04-29T01:24:58,496 copying build/lib/polyply/data/2016H66/polyvinyl_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2024-04-29T01:24:58,501 copying build/lib/polyply/data/2016H66/terminal_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2024-04-29T01:24:58,505 copying build/lib/polyply/data/2016H66/polyether_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2024-04-29T01:24:58,509 copying build/lib/polyply/data/2016H66/chiral_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2024-04-29T01:24:58,513 copying build/lib/polyply/data/2016H66/polyether_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2024-04-29T01:24:58,517 running install_egg_info 2024-04-29T01:24:58,532 Copying polyply.egg-info to build/bdist.linux-armv7l/wheel/polyply-1.7.0-py3.7.egg-info 2024-04-29T01:24:58,564 running install_scripts 2024-04-29T01:24:58,567 creating build/bdist.linux-armv7l/wheel/polyply-1.7.0.data 2024-04-29T01:24:58,568 creating build/bdist.linux-armv7l/wheel/polyply-1.7.0.data/scripts 2024-04-29T01:24:58,570 copying build/scripts-3.7/polyply -> build/bdist.linux-armv7l/wheel/polyply-1.7.0.data/scripts 2024-04-29T01:24:58,575 changing mode of build/bdist.linux-armv7l/wheel/polyply-1.7.0.data/scripts/polyply to 755 2024-04-29T01:24:58,629 creating build/bdist.linux-armv7l/wheel/polyply-1.7.0.dist-info/WHEEL 2024-04-29T01:24:58,637 creating '/tmp/pip-wheel-5norucoi/.tmp-g91u_kp6/polyply-1.7.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-29T01:24:58,645 adding 'polyply/__init__.py' 2024-04-29T01:24:58,650 adding 'polyply/data/__init__.py' 2024-04-29T01:24:58,654 adding 'polyply/data/2016H66/chiral_links.ff' 2024-04-29T01:24:58,657 adding 'polyply/data/2016H66/citation.bib' 2024-04-29T01:24:58,660 adding 'polyply/data/2016H66/polyether_blocks.ff' 2024-04-29T01:24:58,663 adding 'polyply/data/2016H66/polyether_links.ff' 2024-04-29T01:24:58,666 adding 'polyply/data/2016H66/polyether_polyvinyl_links.ff' 2024-04-29T01:24:58,670 adding 'polyply/data/2016H66/polyvinyl_blocks.ff' 2024-04-29T01:24:58,673 adding 'polyply/data/2016H66/polyvinyl_links.ff' 2024-04-29T01:24:58,676 adding 'polyply/data/2016H66/terminal_blocks.ff' 2024-04-29T01:24:58,679 adding 'polyply/data/gromos53A6/Hter.ff' 2024-04-29T01:24:58,683 adding 'polyply/data/gromos53A6/P3HT.gromos.53A6.ff' 2024-04-29T01:24:58,686 adding 'polyply/data/gromos53A6/citations.bib' 2024-04-29T01:24:58,689 adding 'polyply/data/gromos53A6/links.ff' 2024-04-29T01:24:58,693 adding 'polyply/data/ibi_cgm3/PTMA.cgm3.ibi.ff' 2024-04-29T01:24:58,696 adding 'polyply/data/ibi_cgm3/citations.bib' 2024-04-29T01:24:58,700 adding 'polyply/data/ibi_gbcg/PTMA.gbno2.ibi.ff' 2024-04-29T01:24:58,703 adding 'polyply/data/ibi_gbcg/citations.bib' 2024-04-29T01:24:58,708 adding 'polyply/data/martini2/DNA_M2.ff' 2024-04-29T01:24:58,712 adding 'polyply/data/martini2/P3HT.martini.2.itp' 2024-04-29T01:24:58,714 adding 'polyply/data/martini2/PDADMA.martini.2.itp' 2024-04-29T01:24:58,717 adding 'polyply/data/martini2/PE.martini.2.itp' 2024-04-29T01:24:58,720 adding 'polyply/data/martini2/PEO.martini.2.itp' 2024-04-29T01:24:58,722 adding 'polyply/data/martini2/PP.martini.2.itp' 2024-04-29T01:24:58,725 adding 'polyply/data/martini2/PS.martini.2.itp' 2024-04-29T01:24:58,728 adding 'polyply/data/martini2/PSS.martini.2.itp' 2024-04-29T01:24:58,732 adding 'polyply/data/martini2/citations.bib' 2024-04-29T01:24:58,735 adding 'polyply/data/martini2/links.ff' 2024-04-29T01:24:58,739 adding 'polyply/data/martini3/P3HT.martini3.ff' 2024-04-29T01:24:58,742 adding 'polyply/data/martini3/PDMS.martini3.ff' 2024-04-29T01:24:58,745 adding 'polyply/data/martini3/PE.martini3.ff' 2024-04-29T01:24:58,748 adding 'polyply/data/martini3/PEL_link.ff' 2024-04-29T01:24:58,750 adding 'polyply/data/martini3/PEO.martini3.ff' 2024-04-29T01:24:58,753 adding 'polyply/data/martini3/PMA.martini3.ff' 2024-04-29T01:24:58,755 adding 'polyply/data/martini3/PMMA.martini3.ff' 2024-04-29T01:24:58,759 adding 'polyply/data/martini3/PPE.martini3.ff' 2024-04-29T01:24:58,762 adding 'polyply/data/martini3/PS.martini3.ff' 2024-04-29T01:24:58,765 adding 'polyply/data/martini3/PSS.martini3.ff' 2024-04-29T01:24:58,767 adding 'polyply/data/martini3/PS_PEO_link.ff' 2024-04-29T01:24:58,771 adding 'polyply/data/martini3/PTMA.martini3.ff' 2024-04-29T01:24:58,773 adding 'polyply/data/martini3/PVA.martini3.ff' 2024-04-29T01:24:58,779 adding 'polyply/data/martini3/aminoacids.ff' 2024-04-29T01:24:58,782 adding 'polyply/data/martini3/cellulose.martini3.ff' 2024-04-29T01:24:58,786 adding 'polyply/data/martini3/citations.bib' 2024-04-29T01:24:58,789 adding 'polyply/data/martini3/dextran.martini3.ff' 2024-04-29T01:24:58,792 adding 'polyply/data/martini3_beta/PEO.martini.3.itp' 2024-04-29T01:24:58,795 adding 'polyply/data/martini3_beta/citations.bib' 2024-04-29T01:24:58,799 adding 'polyply/data/oplsaaLigParGen/CH3.ff' 2024-04-29T01:24:58,802 adding 'polyply/data/oplsaaLigParGen/OHter.ff' 2024-04-29T01:24:58,805 adding 'polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff' 2024-04-29T01:24:58,810 adding 'polyply/data/oplsaaLigParGen/PTMA.oplsaa.LigParGen.ff' 2024-04-29T01:24:58,814 adding 'polyply/data/oplsaaLigParGen/citations.bib' 2024-04-29T01:24:58,817 adding 'polyply/data/oplsaaLigParGen/links.ff' 2024-04-29T01:24:58,821 adding 'polyply/data/oplsaaLigParGen/links_PTMA.ff' 2024-04-29T01:24:58,825 adding 'polyply/data/parmbsc1/citations.bib' 2024-04-29T01:24:58,840 adding 'polyply/data/parmbsc1/dna_final.ff' 2024-04-29T01:24:58,846 adding 'polyply/src/__init__.py' 2024-04-29T01:24:58,850 adding 'polyply/src/annotate_ligands.py' 2024-04-29T01:24:58,857 adding 'polyply/src/apply_links.py' 2024-04-29T01:24:58,861 adding 'polyply/src/apply_modifications.py' 2024-04-29T01:24:58,864 adding 'polyply/src/backmap.py' 2024-04-29T01:24:58,869 adding 'polyply/src/build_file_parser.py' 2024-04-29T01:24:58,873 adding 'polyply/src/build_system.py' 2024-04-29T01:24:58,876 adding 'polyply/src/check_residue_equivalence.py' 2024-04-29T01:24:58,879 adding 'polyply/src/ff_parser_sub.py' 2024-04-29T01:24:58,884 adding 'polyply/src/gen_coords.py' 2024-04-29T01:24:58,887 adding 'polyply/src/gen_dna.py' 2024-04-29T01:24:58,891 adding 'polyply/src/gen_itp.py' 2024-04-29T01:24:58,896 adding 'polyply/src/gen_seq.py' 2024-04-29T01:24:58,901 adding 'polyply/src/generate_templates.py' 2024-04-29T01:24:58,905 adding 'polyply/src/graph_utils.py' 2024-04-29T01:24:58,909 adding 'polyply/src/linalg_functions.py' 2024-04-29T01:24:58,912 adding 'polyply/src/load_library.py' 2024-04-29T01:24:58,915 adding 'polyply/src/logging.py' 2024-04-29T01:24:58,920 adding 'polyply/src/map_to_molecule.py' 2024-04-29T01:24:58,925 adding 'polyply/src/meta_molecule.py' 2024-04-29T01:24:58,929 adding 'polyply/src/minimizer.py' 2024-04-29T01:24:58,935 adding 'polyply/src/nonbond_engine.py' 2024-04-29T01:24:58,939 adding 'polyply/src/persistence.py' 2024-04-29T01:24:58,943 adding 'polyply/src/polyply_parser.py' 2024-04-29T01:24:58,946 adding 'polyply/src/processor.py' 2024-04-29T01:24:58,951 adding 'polyply/src/random_walk.py' 2024-04-29T01:24:58,955 adding 'polyply/src/restraints.py' 2024-04-29T01:24:58,959 adding 'polyply/src/simple_seq_parsers.py' 2024-04-29T01:24:58,965 adding 'polyply/src/top_parser.py' 2024-04-29T01:24:58,972 adding 'polyply/src/topology.py' 2024-04-29T01:24:58,975 adding 'polyply/src/virtual_site_builder.py' 2024-04-29T01:24:58,981 adding 'polyply/tests/__init__.py' 2024-04-29T01:24:58,984 adding 'polyply/tests/example_fixtures.py' 2024-04-29T01:24:58,988 adding 'polyply/tests/test_annotate_lingads.py' 2024-04-29T01:24:58,995 adding 'polyply/tests/test_apply_links.py' 2024-04-29T01:24:58,998 adding 'polyply/tests/test_backmap.py' 2024-04-29T01:24:59,003 adding 'polyply/tests/test_build_file_parser.py' 2024-04-29T01:24:59,007 adding 'polyply/tests/test_build_system.py' 2024-04-29T01:24:59,010 adding 'polyply/tests/test_ff_parser.py' 2024-04-29T01:24:59,013 adding 'polyply/tests/test_gen_coords.py' 2024-04-29T01:24:59,017 adding 'polyply/tests/test_gen_coords_logic.py' 2024-04-29T01:24:59,020 adding 'polyply/tests/test_gen_dna.py' 2024-04-29T01:24:59,024 adding 'polyply/tests/test_gen_params.py' 2024-04-29T01:24:59,027 adding 'polyply/tests/test_gen_seq.py' 2024-04-29T01:24:59,031 adding 'polyply/tests/test_generate_templates.py' 2024-04-29T01:24:59,035 adding 'polyply/tests/test_graph_utils.py' 2024-04-29T01:24:59,041 adding 'polyply/tests/test_itp_files.py' 2024-04-29T01:24:59,046 adding 'polyply/tests/test_lib_files.py' 2024-04-29T01:24:59,049 adding 'polyply/tests/test_linalg.py' 2024-04-29T01:24:59,052 adding 'polyply/tests/test_load_library.py' 2024-04-29T01:24:59,055 adding 'polyply/tests/test_logging.py' 2024-04-29T01:24:59,060 adding 'polyply/tests/test_map_to_molecule.py' 2024-04-29T01:24:59,064 adding 'polyply/tests/test_meta_molecule.py' 2024-04-29T01:24:59,068 adding 'polyply/tests/test_nb_engine.py' 2024-04-29T01:24:59,073 adding 'polyply/tests/test_optimize_geometry.py' 2024-04-29T01:24:59,077 adding 'polyply/tests/test_persistence.py' 2024-04-29T01:24:59,081 adding 'polyply/tests/test_polyply_input.py' 2024-04-29T01:24:59,085 adding 'polyply/tests/test_random_walk.py' 2024-04-29T01:24:59,089 adding 'polyply/tests/test_residue_check.py' 2024-04-29T01:24:59,092 adding 'polyply/tests/test_restraints.py' 2024-04-29T01:24:59,095 adding 'polyply/tests/test_simple_seq_parsers.py' 2024-04-29T01:24:59,100 adding 'polyply/tests/test_top_parser.py' 2024-04-29T01:24:59,106 adding 'polyply/tests/test_topology.py' 2024-04-29T01:24:59,109 adding 'polyply/tests/test_vs_builder.py' 2024-04-29T01:24:59,117 adding 'polyply/tests/test_data/ff/aminoacids.ff' 2024-04-29T01:24:59,120 adding 'polyply/tests/test_data/ff/unknown_file.txt' 2024-04-29T01:24:59,126 adding 'polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp' 2024-04-29T01:24:59,129 adding 'polyply/tests/test_data/gen_params/input/PEO.martini.3.itp' 2024-04-29T01:24:59,132 adding 'polyply/tests/test_data/gen_params/input/PPI.ff' 2024-04-29T01:24:59,135 adding 'polyply/tests/test_data/gen_params/input/PPI.json' 2024-04-29T01:24:59,137 adding 'polyply/tests/test_data/gen_params/input/PS.json' 2024-04-29T01:24:59,140 adding 'polyply/tests/test_data/gen_params/input/PS.martini.2.itp' 2024-04-29T01:24:59,143 adding 'polyply/tests/test_data/gen_params/input/removal.ff' 2024-04-29T01:24:59,146 adding 'polyply/tests/test_data/gen_params/input/test.ff' 2024-04-29T01:24:59,149 adding 'polyply/tests/test_data/gen_params/input/test_edge_attr.ff' 2024-04-29T01:24:59,151 adding 'polyply/tests/test_data/gen_params/input/test_edge_attr.json' 2024-04-29T01:24:59,155 adding 'polyply/tests/test_data/gen_params/logging/ERROR_block.ff' 2024-04-29T01:24:59,158 adding 'polyply/tests/test_data/gen_params/logging/ERROR_link.ff' 2024-04-29T01:24:59,161 adding 'polyply/tests/test_data/gen_params/logging/INFO_block.ff' 2024-04-29T01:24:59,163 adding 'polyply/tests/test_data/gen_params/logging/INFO_link.ff' 2024-04-29T01:24:59,166 adding 'polyply/tests/test_data/gen_params/logging/WARNING_block.ff' 2024-04-29T01:24:59,169 adding 'polyply/tests/test_data/gen_params/logging/WARNING_link.ff' 2024-04-29T01:24:59,173 adding 'polyply/tests/test_data/gen_params/ref/G3.itp' 2024-04-29T01:24:59,177 adding 'polyply/tests/test_data/gen_params/ref/P3HT_10.itp' 2024-04-29T01:24:59,181 adding 'polyply/tests/test_data/gen_params/ref/PEO_10.itp' 2024-04-29T01:24:59,185 adding 'polyply/tests/test_data/gen_params/ref/PS_10.itp' 2024-04-29T01:24:59,187 adding 'polyply/tests/test_data/gen_params/ref/end.itp' 2024-04-29T01:24:59,190 adding 'polyply/tests/test_data/gen_params/ref/removal.itp' 2024-04-29T01:24:59,193 adding 'polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp' 2024-04-29T01:24:59,195 adding 'polyply/tests/test_data/gen_params/ref/test_rev.itp' 2024-04-29T01:24:59,216 adding 'polyply/tests/test_data/gen_seq/input/molecule_0.itp' 2024-04-29T01:24:59,221 adding 'polyply/tests/test_data/gen_seq/output/PEO_PS.json' 2024-04-29T01:24:59,224 adding 'polyply/tests/test_data/gen_seq/output/PPI.json' 2024-04-29T01:24:59,237 adding 'polyply/tests/test_data/gen_seq/output/lysoPEG.json' 2024-04-29T01:24:59,256 adding 'polyply/tests/test_data/gen_seq/output/lyso_PEG.json' 2024-04-29T01:24:59,265 adding 'polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json' 2024-04-29T01:24:59,278 adding 'polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json' 2024-04-29T01:24:59,285 adding 'polyply/tests/test_data/gen_seq/ref/PPI_ref.json' 2024-04-29T01:24:59,296 adding 'polyply/tests/test_data/gen_seq/ref/lyso_PEG.json' 2024-04-29T01:24:59,308 adding 'polyply/tests/test_data/itp/PEO.itp' 2024-04-29T01:24:59,317 adding 'polyply/tests/test_data/json/double_branch.json' 2024-04-29T01:24:59,321 adding 'polyply/tests/test_data/json/fail.json' 2024-04-29T01:24:59,326 adding 'polyply/tests/test_data/json/hyperbranched.json' 2024-04-29T01:24:59,330 adding 'polyply/tests/test_data/json/linear.json' 2024-04-29T01:24:59,333 adding 'polyply/tests/test_data/json/linear_rev.json' 2024-04-29T01:24:59,337 adding 'polyply/tests/test_data/json/single_branch.json' 2024-04-29T01:24:59,347 adding 'polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp' 2024-04-29T01:24:59,351 adding 'polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command' 2024-04-29T01:24:59,358 adding 'polyply/tests/test_data/library_tests/2016H66/PE/PE.json' 2024-04-29T01:24:59,366 adding 'polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp' 2024-04-29T01:24:59,370 adding 'polyply/tests/test_data/library_tests/2016H66/PE/polyply/command' 2024-04-29T01:24:59,377 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json' 2024-04-29T01:24:59,382 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp' 2024-04-29T01:24:59,385 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command' 2024-04-29T01:24:59,388 adding 'polyply/tests/test_data/library_tests/2016H66/PP/PP.json' 2024-04-29T01:24:59,392 adding 'polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp' 2024-04-29T01:24:59,395 adding 'polyply/tests/test_data/library_tests/2016H66/PP/polyply/command' 2024-04-29T01:24:59,399 adding 'polyply/tests/test_data/library_tests/2016H66/PS/PS.json' 2024-04-29T01:24:59,404 adding 'polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp' 2024-04-29T01:24:59,407 adding 'polyply/tests/test_data/library_tests/2016H66/PS/polyply/command' 2024-04-29T01:24:59,412 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json' 2024-04-29T01:24:59,417 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp' 2024-04-29T01:24:59,420 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command' 2024-04-29T01:24:59,434 adding 'polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp' 2024-04-29T01:24:59,436 adding 'polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command' 2024-04-29T01:24:59,443 adding 'polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply/PTMA.itp' 2024-04-29T01:24:59,446 adding 'polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply/command' 2024-04-29T01:24:59,454 adding 'polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply/PTMA.itp' 2024-04-29T01:24:59,458 adding 'polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply/command' 2024-04-29T01:24:59,469 adding 'polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp' 2024-04-29T01:24:59,479 adding 'polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp' 2024-04-29T01:24:59,484 adding 'polyply/tests/test_data/library_tests/martini2/PEL/polyply/command' 2024-04-29T01:24:59,496 adding 'polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp' 2024-04-29T01:24:59,500 adding 'polyply/tests/test_data/library_tests/martini2/PEO/polyply/command' 2024-04-29T01:24:59,503 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json' 2024-04-29T01:24:59,507 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp' 2024-04-29T01:24:59,509 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command' 2024-04-29T01:24:59,514 adding 'polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp' 2024-04-29T01:24:59,517 adding 'polyply/tests/test_data/library_tests/martini2/PS/polyply/command' 2024-04-29T01:24:59,610 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp' 2024-04-29T01:24:59,618 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json' 2024-04-29T01:24:59,622 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command' 2024-04-29T01:24:59,724 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp' 2024-04-29T01:24:59,745 adding 'polyply/tests/test_data/library_tests/martini3/CEL/polyply/CEL.itp' 2024-04-29T01:24:59,748 adding 'polyply/tests/test_data/library_tests/martini3/CEL/polyply/command' 2024-04-29T01:24:59,754 adding 'polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp' 2024-04-29T01:24:59,757 adding 'polyply/tests/test_data/library_tests/martini3/DEX/polyply/command' 2024-04-29T01:24:59,762 adding 'polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp' 2024-04-29T01:24:59,765 adding 'polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command' 2024-04-29T01:24:59,771 adding 'polyply/tests/test_data/library_tests/martini3/PDMS/polyply/PDMS.itp' 2024-04-29T01:24:59,774 adding 'polyply/tests/test_data/library_tests/martini3/PDMS/polyply/command' 2024-04-29T01:24:59,779 adding 'polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp' 2024-04-29T01:24:59,781 adding 'polyply/tests/test_data/library_tests/martini3/PE/polyply/command' 2024-04-29T01:24:59,786 adding 'polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp' 2024-04-29T01:24:59,789 adding 'polyply/tests/test_data/library_tests/martini3/PEO/polyply/command' 2024-04-29T01:24:59,796 adding 'polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp' 2024-04-29T01:24:59,799 adding 'polyply/tests/test_data/library_tests/martini3/PPE/polyply/command' 2024-04-29T01:24:59,802 adding 'polyply/tests/test_data/library_tests/martini3/PROT/PNt.fasta' 2024-04-29T01:24:59,866 adding 'polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp' 2024-04-29T01:24:59,872 adding 'polyply/tests/test_data/library_tests/martini3/PROT/polyply/command' 2024-04-29T01:24:59,877 adding 'polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp' 2024-04-29T01:24:59,880 adding 'polyply/tests/test_data/library_tests/martini3/PS/polyply/command' 2024-04-29T01:24:59,886 adding 'polyply/tests/test_data/library_tests/martini3/PTMA/polyply/PTMA.itp' 2024-04-29T01:24:59,888 adding 'polyply/tests/test_data/library_tests/martini3/PTMA/polyply/command' 2024-04-29T01:24:59,897 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp' 2024-04-29T01:24:59,900 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command' 2024-04-29T01:24:59,942 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply/PTMA.itp' 2024-04-29T01:24:59,948 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply/command' 2024-04-29T01:25:00,009 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp' 2024-04-29T01:25:00,014 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json' 2024-04-29T01:25:00,079 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp' 2024-04-29T01:25:00,085 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command' 2024-04-29T01:25:00,089 adding 'polyply/tests/test_data/library_tests/parmbsc1/dsDNA/ref.json' 2024-04-29T01:25:00,143 adding 'polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply/DNA.itp' 2024-04-29T01:25:00,149 adding 'polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply/command' 2024-04-29T01:25:00,153 adding 'polyply/tests/test_data/polyply/P3HT.martini.2.itp' 2024-04-29T01:25:00,156 adding 'polyply/tests/test_data/polyply/PDADMA.martini.2.itp' 2024-04-29T01:25:00,159 adding 'polyply/tests/test_data/polyply/PE.martini.2.itp' 2024-04-29T01:25:00,162 adding 'polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp' 2024-04-29T01:25:00,165 adding 'polyply/tests/test_data/polyply/PEO.martini.2.itp' 2024-04-29T01:25:00,168 adding 'polyply/tests/test_data/polyply/PEO.martini.3.itp' 2024-04-29T01:25:00,171 adding 'polyply/tests/test_data/polyply/PP.martini.2.itp' 2024-04-29T01:25:00,174 adding 'polyply/tests/test_data/polyply/PS.martini.2.itp' 2024-04-29T01:25:00,177 adding 'polyply/tests/test_data/polyply/PSS.martini.2.itp' 2024-04-29T01:25:00,181 adding 'polyply/tests/test_data/simple_seq_files/test.fasta' 2024-04-29T01:25:00,184 adding 'polyply/tests/test_data/simple_seq_files/test.ig' 2024-04-29T01:25:00,186 adding 'polyply/tests/test_data/simple_seq_files/test.txt' 2024-04-29T01:25:00,188 adding 'polyply/tests/test_data/simple_seq_files/test_RNA.fasta' 2024-04-29T01:25:00,191 adding 'polyply/tests/test_data/simple_seq_files/test_RNA.ig' 2024-04-29T01:25:00,193 adding 'polyply/tests/test_data/simple_seq_files/test_circle.ig' 2024-04-29T01:25:00,196 adding 'polyply/tests/test_data/simple_seq_files/test_fail.ig' 2024-04-29T01:25:00,198 adding 'polyply/tests/test_data/simple_seq_files/test_ig_warning.ig' 2024-04-29T01:25:00,201 adding 'polyply/tests/test_data/simple_seq_files/test_protein.fasta' 2024-04-29T01:25:00,204 adding 'polyply/tests/test_data/struc_build/PEO.bld' 2024-04-29T01:25:00,207 adding 'polyply/tests/test_data/struc_build/PEO.itp' 2024-04-29T01:25:00,219 adding 'polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp' 2024-04-29T01:25:00,223 adding 'polyply/tests/test_data/struc_build/system.top' 2024-04-29T01:25:00,227 adding 'polyply/tests/test_data/topology_test/W.itp' 2024-04-29T01:25:00,230 adding 'polyply/tests/test_data/topology_test/cog.gro' 2024-04-29T01:25:00,232 adding 'polyply/tests/test_data/topology_test/cog_missing.gro' 2024-04-29T01:25:00,235 adding 'polyply/tests/test_data/topology_test/complete.gro' 2024-04-29T01:25:00,238 adding 'polyply/tests/test_data/topology_test/fail.gro' 2024-04-29T01:25:00,323 adding 'polyply/tests/test_data/topology_test/ffnonbonded.itp' 2024-04-29T01:25:00,334 adding 'polyply/tests/test_data/topology_test/meta.gro' 2024-04-29T01:25:00,376 adding 'polyply/tests/test_data/topology_test/molecule_0.itp' 2024-04-29T01:25:00,381 adding 'polyply/tests/test_data/topology_test/pdb.top' 2024-04-29T01:25:00,384 adding 'polyply/tests/test_data/topology_test/system.top' 2024-04-29T01:25:00,386 adding 'polyply/tests/test_data/topology_test/test.bld' 2024-04-29T01:25:00,389 adding 'polyply/tests/test_data/topology_test/test.gro' 2024-04-29T01:25:00,392 adding 'polyply/tests/test_data/topology_test/test.itp' 2024-04-29T01:25:00,423 adding 'polyply/tests/test_data/topology_test/test.pdb' 2024-04-29T01:25:00,431 adding 'polyply-1.7.0.data/scripts/polyply' 2024-04-29T01:25:00,437 adding 'polyply-1.7.0.dist-info/AUTHORS' 2024-04-29T01:25:00,442 adding 'polyply-1.7.0.dist-info/LICENSE' 2024-04-29T01:25:00,445 adding 'polyply-1.7.0.dist-info/METADATA' 2024-04-29T01:25:00,447 adding 'polyply-1.7.0.dist-info/WHEEL' 2024-04-29T01:25:00,450 adding 'polyply-1.7.0.dist-info/pbr.json' 2024-04-29T01:25:00,452 adding 'polyply-1.7.0.dist-info/top_level.txt' 2024-04-29T01:25:00,466 adding 'polyply-1.7.0.dist-info/RECORD' 2024-04-29T01:25:00,505 removing build/bdist.linux-armv7l/wheel 2024-04-29T01:25:00,712 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.struc_build' is absent from the `packages` configuration. 2024-04-29T01:25:00,713 !! 2024-04-29T01:25:00,714 ******************************************************************************** 2024-04-29T01:25:00,714 ############################ 2024-04-29T01:25:00,715 # Package would be ignored # 2024-04-29T01:25:00,715 ############################ 2024-04-29T01:25:00,715 Python recognizes 'polyply.tests.test_data.struc_build' as an importable package[^1], 2024-04-29T01:25:00,716 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:25:00,716 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:25:00,717 package, please make sure that 'polyply.tests.test_data.struc_build' is explicitly added 2024-04-29T01:25:00,717 to the `packages` configuration field. 2024-04-29T01:25:00,718 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:25:00,718 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:25:00,718 instead of `find_packages(...)`/`find:`). 2024-04-29T01:25:00,719 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:25:00,720 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:25:00,721 If you don't want 'polyply.tests.test_data.struc_build' to be distributed and are 2024-04-29T01:25:00,721 already explicitly excluding 'polyply.tests.test_data.struc_build' via 2024-04-29T01:25:00,722 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:25:00,722 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:25:00,722 combination with a more fine grained `package-data` configuration. 2024-04-29T01:25:00,723 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:25:00,724 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:25:00,726 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:25:00,726 even if it does not contain any `.py` files. 2024-04-29T01:25:00,727 On the other hand, currently there is no concept of package data 2024-04-29T01:25:00,727 directory, all directories are treated like packages. 2024-04-29T01:25:00,727 ******************************************************************************** 2024-04-29T01:25:00,728 !! 2024-04-29T01:25:00,729 check.warn(importable) 2024-04-29T01:25:00,729 /tmp/pip-build-env-qnb9r6m7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'polyply.tests.test_data.topology_test' is absent from the `packages` configuration. 2024-04-29T01:25:00,730 !! 2024-04-29T01:25:00,731 ******************************************************************************** 2024-04-29T01:25:00,731 ############################ 2024-04-29T01:25:00,731 # Package would be ignored # 2024-04-29T01:25:00,732 ############################ 2024-04-29T01:25:00,732 Python recognizes 'polyply.tests.test_data.topology_test' as an importable package[^1], 2024-04-29T01:25:00,733 but it is absent from setuptools' `packages` configuration. 2024-04-29T01:25:00,734 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-29T01:25:00,734 package, please make sure that 'polyply.tests.test_data.topology_test' is explicitly added 2024-04-29T01:25:00,735 to the `packages` configuration field. 2024-04-29T01:25:00,735 Alternatively, you can also rely on setuptools' discovery methods 2024-04-29T01:25:00,736 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-29T01:25:00,736 instead of `find_packages(...)`/`find:`). 2024-04-29T01:25:00,737 You can read more about "package discovery" on setuptools documentation page: 2024-04-29T01:25:00,738 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-29T01:25:00,739 If you don't want 'polyply.tests.test_data.topology_test' to be distributed and are 2024-04-29T01:25:00,739 already explicitly excluding 'polyply.tests.test_data.topology_test' via 2024-04-29T01:25:00,740 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-29T01:25:00,740 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-29T01:25:00,741 combination with a more fine grained `package-data` configuration. 2024-04-29T01:25:00,741 You can read more about "package data files" on setuptools documentation page: 2024-04-29T01:25:00,742 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-29T01:25:00,743 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-29T01:25:00,744 even if it does not contain any `.py` files. 2024-04-29T01:25:00,744 On the other hand, currently there is no concept of package data 2024-04-29T01:25:00,744 directory, all directories are treated like packages. 2024-04-29T01:25:00,745 ******************************************************************************** 2024-04-29T01:25:00,746 !! 2024-04-29T01:25:00,746 check.warn(importable) 2024-04-29T01:25:00,917 Building wheel for polyply (pyproject.toml): finished with status 'done' 2024-04-29T01:25:00,981 Created wheel for polyply: filename=polyply-1.7.0-py2.py3-none-any.whl size=723514 sha256=0aa2b444f2396baaf5754a93972bafa7846bfc8c1b71814d68140694ec2e6b1d 2024-04-29T01:25:00,984 Stored in directory: /tmp/pip-ephem-wheel-cache-nd3nxnm4/wheels/11/79/6f/0d2ab999690e1db9ace2d34d5d8c7cba04d4febdb15a198396 2024-04-29T01:25:01,047 Successfully built polyply 2024-04-29T01:25:01,111 Removed build tracker: '/tmp/pip-build-tracker-on5abu_0'