2024-04-30T04:29:56,429 Created temporary directory: /tmp/pip-build-tracker-rgly2wav 2024-04-30T04:29:56,430 Initialized build tracking at /tmp/pip-build-tracker-rgly2wav 2024-04-30T04:29:56,430 Created build tracker: /tmp/pip-build-tracker-rgly2wav 2024-04-30T04:29:56,430 Entered build tracker: /tmp/pip-build-tracker-rgly2wav 2024-04-30T04:29:56,431 Created temporary directory: /tmp/pip-wheel-al_yeeey 2024-04-30T04:29:56,435 Created temporary directory: /tmp/pip-ephem-wheel-cache-_cjy9akc 2024-04-30T04:29:56,462 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-30T04:29:56,466 2 location(s) to search for versions of cryodrgn: 2024-04-30T04:29:56,466 * https://pypi.org/simple/cryodrgn/ 2024-04-30T04:29:56,466 * https://www.piwheels.org/simple/cryodrgn/ 2024-04-30T04:29:56,466 Fetching project page and analyzing links: https://pypi.org/simple/cryodrgn/ 2024-04-30T04:29:56,467 Getting page https://pypi.org/simple/cryodrgn/ 2024-04-30T04:29:56,468 Found index url https://pypi.org/simple/ 2024-04-30T04:29:56,521 Fetched page https://pypi.org/simple/cryodrgn/ as application/vnd.pypi.simple.v1+json 2024-04-30T04:29:56,526 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/50/91/1306b78002812cfa9932e2691070f765b75d4385e4bbf559d211a4e71025/cryodrgn-1.1.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,527 Found link https://files.pythonhosted.org/packages/24/08/8de601e5f4fe8a5177c4191c0be1848d2952dad0ef149820aadadbee2e08/cryodrgn-1.1.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 1.1.1 2024-04-30T04:29:56,527 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/e9/78/bdf1fd8d9394a0025206a4d1478b21170d7392e35132522c5ef87855fe73/cryodrgn-2.1.0b5-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,528 Found link https://files.pythonhosted.org/packages/68/26/6669e39abe77e36bd49d1f21f68ed04961bdd0a76f909b497c96ce78b60b/cryodrgn-2.1.0b5.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.1.0b5 2024-04-30T04:29:56,528 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7d/d8/dae369c30a1b908f5713f7b46f4948aed0253f9e7e124c98e6c7b15d7e57/cryodrgn-2.2.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,528 Found link https://files.pythonhosted.org/packages/6f/19/b950e5eb7a6d3c8d122bec56e59c447d3585a660a7605112a5346816014e/cryodrgn-2.2.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0b0 2024-04-30T04:29:56,529 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/6d/79/97a3f0118ef0c156bf5eaf931f4a5855a5c5d27dedd04aaa0bcf57fe1f7c/cryodrgn-2.2.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,529 Found link https://files.pythonhosted.org/packages/03/50/3259e1a4efc92c945d1ae88fd5765a0ba4db77f0a742fc0e0a206cd781ac/cryodrgn-2.2.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0 2024-04-30T04:29:56,529 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/03/29/f9750c89414937c8700d9d5aa167d9ed1e3157ebb6a9971effb4bcbe8bec/cryodrgn-2.3.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,530 Found link https://files.pythonhosted.org/packages/d2/69/c5d8c6da2da86575a985307f67f214a0f56a7f79d73492a5184170ea7036/cryodrgn-2.3.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.3.0 2024-04-30T04:29:56,530 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/08/8d/d0ff2954b5825e3b771a943b40423d57195aec5c30d4b770250ac822c7fe/cryodrgn-3.0.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,531 Found link https://files.pythonhosted.org/packages/74/92/6ca0ee245ed52438a0f471cfb29de766b9822010f760da08875be946e827/cryodrgn-3.0.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.0b0 2024-04-30T04:29:56,531 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/ec/e4/6ed8adf3e7b526a69e850b7e5d1b7f6fceede2b3683b35c81944321149a7/cryodrgn-3.0.1b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,532 Found link https://files.pythonhosted.org/packages/9d/05/4215fddb0e1cce3525690435efa36cef19ad50c1808b1d48771ea3b7ff37/cryodrgn-3.0.1b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.1b0 2024-04-30T04:29:56,532 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/f4/5b/054660b4368ce3eaf45f8301c941cf2e5ee0ba92b1f76dd1503c64d9d156/cryodrgn-3.1.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,533 Found link https://files.pythonhosted.org/packages/fa/81/02d79980623ec3e72fe0a381ab2953b96b71bcd81937ff54943dd2c85054/cryodrgn-3.1.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.1.0b0 2024-04-30T04:29:56,533 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7b/90/4d4442c4ef959de675c6815995a483c1da8c840ce73da4a2208463548db7/cryodrgn-3.2.0a0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-04-30T04:29:56,533 Found link https://files.pythonhosted.org/packages/f2/8b/00d75ab0c8fb63f1bf59c2322d38b3e63c79882cfc9071792af0800b9c8c/cryodrgn-3.2.0a0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0a0 2024-04-30T04:29:56,534 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/06/24/d655857f07fcb5600f36cec129e365e86492b0a97de029b99f3d83615f5d/cryodrgn-3.2.0a1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-04-30T04:29:56,534 Found link https://files.pythonhosted.org/packages/3d/7e/6f69becd5004ad87380939fd7438a730a9a723a76012e918731f58e8355c/cryodrgn-3.2.0a1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0a1 2024-04-30T04:29:56,535 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/f6/33/67c3f1227b7798d9cade4a14dd8a16aaa0d537531f6e41d9d11b30c2895c/cryodrgn-3.2.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-04-30T04:29:56,535 Found link https://files.pythonhosted.org/packages/d8/29/f6b3a3cb3463d56218319de48999e2cc281499e3afa8505f495ac1d4c201/cryodrgn-3.2.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0b0 2024-04-30T04:29:56,536 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/8c/8b/d004a4dc6b3825ee4a87d39d1045b34796bbcbbc54bbe5b482f65bac1f6c/cryodrgn-3.3.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9) 2024-04-30T04:29:56,536 Found link https://files.pythonhosted.org/packages/8c/10/8dd0c198e9d986f1e36223c0238383b7ca634ad291169161d9837f811507/cryodrgn-3.3.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 3.3.0 2024-04-30T04:29:56,537 Fetching project page and analyzing links: https://www.piwheels.org/simple/cryodrgn/ 2024-04-30T04:29:56,537 Getting page https://www.piwheels.org/simple/cryodrgn/ 2024-04-30T04:29:56,538 Found index url https://www.piwheels.org/simple/ 2024-04-30T04:29:56,608 Fetched page https://www.piwheels.org/simple/cryodrgn/ as text/html 2024-04-30T04:29:56,612 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0b0-py3-none-any.whl#sha256=9be035b539a141bdf9a3a5e223ab2d5eac88e2e8342e4fbdf2aa106b91dd220b (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-04-30T04:29:56,612 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0a1-py3-none-any.whl#sha256=a23e8245ce860c4122cef6f81db6fe3918ab253dab52b10afd0e4f65d9428b3e (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-04-30T04:29:56,613 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0a0-py3-none-any.whl#sha256=ea2d2f810968f04912365abdce1cf74f011e1b5be2b671a741a705ef827f2d4a (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-04-30T04:29:56,613 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.1.0b0-py3-none-any.whl#sha256=929d0ff6af693745b3d438a6e7462cc2845e60d49457cd383b6b17b01778017c (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,613 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.0.1b0-py3-none-any.whl#sha256=c5aa67408ca576f776a9b8a331b966eb87343cb2d3713e29768705555e85f930 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,613 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.0.0b0-py3-none-any.whl#sha256=498fba8644092d42d124e88b81d7209e358d25ea05720b664bd44c454eb221a2 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,614 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.3.0-py3-none-any.whl#sha256=d3f519ed4819eac7456ccee2c974e41070b80d0e895797cf940ea8b8ca729631 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,614 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0-py3-none-any.whl#sha256=6d705695a229d236db29c0b847f18e336bc53358ef3bc125cb158bd743f53bc9 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,614 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0b0-py3-none-any.whl#sha256=ded8ccf2e343961488fc50ee73479e8c5a9bc61dd79a83f509f96e86c01e9306 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,614 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.1.0b5-py3-none-any.whl#sha256=f43221397e48ac64c02c3009e927ea1212a8ad59ed1e20421a65287c9e853652 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,614 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-1.1.1-py3-none-any.whl#sha256=b3cc3928fe1cc0f347265449cd329a61f3b7eadb9f833c26748b681c220cb4ad (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-04-30T04:29:56,614 Skipping link: not a file: https://www.piwheels.org/simple/cryodrgn/ 2024-04-30T04:29:56,615 Skipping link: not a file: https://pypi.org/simple/cryodrgn/ 2024-04-30T04:29:56,633 Given no hashes to check 1 links for project 'cryodrgn': discarding no candidates 2024-04-30T04:29:56,650 Collecting cryodrgn==3.3.0 2024-04-30T04:29:56,652 Created temporary directory: /tmp/pip-unpack-bj2rdip8 2024-04-30T04:29:56,781 Downloading cryodrgn-3.3.0.tar.gz (37.4 MB) 2024-04-30T04:30:05,657 Added cryodrgn==3.3.0 from https://files.pythonhosted.org/packages/8c/10/8dd0c198e9d986f1e36223c0238383b7ca634ad291169161d9837f811507/cryodrgn-3.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-rgly2wav' 2024-04-30T04:30:05,663 Created temporary directory: /tmp/pip-build-env-t8mmeh8r 2024-04-30T04:30:05,673 Installing build dependencies: started 2024-04-30T04:30:05,674 Running command pip subprocess to install build dependencies 2024-04-30T04:30:06,847 Using pip 24.0 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-04-30T04:30:07,440 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-30T04:30:08,921 Collecting setuptools>=61.0 2024-04-30T04:30:08,940 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-04-30T04:30:09,282 Collecting setuptools_scm>=6.2 2024-04-30T04:30:09,298 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2024-04-30T04:30:09,675 Collecting packaging>=20 (from setuptools_scm>=6.2) 2024-04-30T04:30:09,691 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-04-30T04:30:09,821 Collecting typing-extensions (from setuptools_scm>=6.2) 2024-04-30T04:30:09,837 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.11.0-py3-none-any.whl (34 kB) 2024-04-30T04:30:09,950 Collecting tomli>=1 (from setuptools_scm>=6.2) 2024-04-30T04:30:09,965 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2024-04-30T04:30:13,816 Installing collected packages: typing-extensions, tomli, setuptools, packaging, setuptools_scm 2024-04-30T04:30:16,591 Successfully installed packaging-24.0 setuptools-69.5.1 setuptools_scm-8.0.4 tomli-2.0.1 typing-extensions-4.11.0 2024-04-30T04:30:17,069 Installing build dependencies: finished with status 'done' 2024-04-30T04:30:17,075 Getting requirements to build wheel: started 2024-04-30T04:30:17,076 Running command Getting requirements to build wheel 2024-04-30T04:30:17,987 running egg_info 2024-04-30T04:30:17,993 writing cryodrgn.egg-info/PKG-INFO 2024-04-30T04:30:18,001 writing dependency_links to cryodrgn.egg-info/dependency_links.txt 2024-04-30T04:30:18,003 writing entry points to cryodrgn.egg-info/entry_points.txt 2024-04-30T04:30:18,007 writing requirements to cryodrgn.egg-info/requires.txt 2024-04-30T04:30:18,009 writing top-level names to cryodrgn.egg-info/top_level.txt 2024-04-30T04:30:18,058 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-30T04:30:18,066 reading manifest file 'cryodrgn.egg-info/SOURCES.txt' 2024-04-30T04:30:18,075 reading manifest template 'MANIFEST.in' 2024-04-30T04:30:18,077 adding license file 'LICENSE.txt' 2024-04-30T04:30:18,090 writing manifest file 'cryodrgn.egg-info/SOURCES.txt' 2024-04-30T04:30:18,202 Getting requirements to build wheel: finished with status 'done' 2024-04-30T04:30:18,216 Installing backend dependencies: started 2024-04-30T04:30:18,217 Running command pip subprocess to install backend dependencies 2024-04-30T04:30:19,382 Using pip 24.0 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-04-30T04:30:19,981 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-30T04:30:20,410 Collecting wheel 2024-04-30T04:30:20,426 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-30T04:30:23,994 Installing collected packages: wheel 2024-04-30T04:30:24,214 Creating /tmp/pip-build-env-t8mmeh8r/normal/bin 2024-04-30T04:30:24,216 changing mode of /tmp/pip-build-env-t8mmeh8r/normal/bin/wheel to 755 2024-04-30T04:30:24,229 Successfully installed wheel-0.43.0 2024-04-30T04:30:24,638 Installing backend dependencies: finished with status 'done' 2024-04-30T04:30:24,640 Created temporary directory: /tmp/pip-modern-metadata-0dpu7v3q 2024-04-30T04:30:24,643 Preparing metadata (pyproject.toml): started 2024-04-30T04:30:24,644 Running command Preparing metadata (pyproject.toml) 2024-04-30T04:30:25,574 running dist_info 2024-04-30T04:30:25,580 creating /tmp/pip-modern-metadata-0dpu7v3q/cryodrgn.egg-info 2024-04-30T04:30:25,586 writing /tmp/pip-modern-metadata-0dpu7v3q/cryodrgn.egg-info/PKG-INFO 2024-04-30T04:30:25,594 writing dependency_links to /tmp/pip-modern-metadata-0dpu7v3q/cryodrgn.egg-info/dependency_links.txt 2024-04-30T04:30:25,596 writing entry points to /tmp/pip-modern-metadata-0dpu7v3q/cryodrgn.egg-info/entry_points.txt 2024-04-30T04:30:25,600 writing requirements to /tmp/pip-modern-metadata-0dpu7v3q/cryodrgn.egg-info/requires.txt 2024-04-30T04:30:25,601 writing top-level names to /tmp/pip-modern-metadata-0dpu7v3q/cryodrgn.egg-info/top_level.txt 2024-04-30T04:30:25,603 writing manifest file '/tmp/pip-modern-metadata-0dpu7v3q/cryodrgn.egg-info/SOURCES.txt' 2024-04-30T04:30:25,662 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-30T04:30:25,670 reading manifest file '/tmp/pip-modern-metadata-0dpu7v3q/cryodrgn.egg-info/SOURCES.txt' 2024-04-30T04:30:25,673 reading manifest template 'MANIFEST.in' 2024-04-30T04:30:25,676 adding license file 'LICENSE.txt' 2024-04-30T04:30:25,681 writing manifest file '/tmp/pip-modern-metadata-0dpu7v3q/cryodrgn.egg-info/SOURCES.txt' 2024-04-30T04:30:25,682 creating '/tmp/pip-modern-metadata-0dpu7v3q/cryodrgn-3.3.0.dist-info' 2024-04-30T04:30:25,848 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-30T04:30:25,858 Source in /tmp/pip-wheel-al_yeeey/cryodrgn_a10d9588009a468ca12e1988548f3f43 has version 3.3.0, which satisfies requirement cryodrgn==3.3.0 from https://files.pythonhosted.org/packages/8c/10/8dd0c198e9d986f1e36223c0238383b7ca634ad291169161d9837f811507/cryodrgn-3.3.0.tar.gz 2024-04-30T04:30:25,859 Removed cryodrgn==3.3.0 from https://files.pythonhosted.org/packages/8c/10/8dd0c198e9d986f1e36223c0238383b7ca634ad291169161d9837f811507/cryodrgn-3.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-rgly2wav' 2024-04-30T04:30:25,868 Created temporary directory: /tmp/pip-unpack-wdgd1w_s 2024-04-30T04:30:25,869 Created temporary directory: /tmp/pip-unpack-qj5hgcpf 2024-04-30T04:30:25,913 Building wheels for collected packages: cryodrgn 2024-04-30T04:30:25,917 Created temporary directory: /tmp/pip-wheel-cmhi7_pl 2024-04-30T04:30:25,918 Destination directory: /tmp/pip-wheel-cmhi7_pl 2024-04-30T04:30:25,920 Building wheel for cryodrgn (pyproject.toml): started 2024-04-30T04:30:25,921 Running command Building wheel for cryodrgn (pyproject.toml) 2024-04-30T04:30:26,784 running bdist_wheel 2024-04-30T04:30:26,812 running build 2024-04-30T04:30:26,812 running build_py 2024-04-30T04:30:26,820 creating build 2024-04-30T04:30:26,820 creating build/lib 2024-04-30T04:30:26,821 creating build/lib/cryodrgn 2024-04-30T04:30:26,822 copying cryodrgn/models.py -> build/lib/cryodrgn 2024-04-30T04:30:26,825 copying cryodrgn/pose_search.py -> build/lib/cryodrgn 2024-04-30T04:30:26,827 copying cryodrgn/__init__.py -> build/lib/cryodrgn 2024-04-30T04:30:26,829 copying cryodrgn/shift_grid3.py -> build/lib/cryodrgn 2024-04-30T04:30:26,831 copying cryodrgn/ctf.py -> build/lib/cryodrgn 2024-04-30T04:30:26,833 copying cryodrgn/source.py -> build/lib/cryodrgn 2024-04-30T04:30:26,835 copying cryodrgn/pose.py -> build/lib/cryodrgn 2024-04-30T04:30:26,837 copying cryodrgn/make_healpy.py -> build/lib/cryodrgn 2024-04-30T04:30:26,839 copying cryodrgn/utils.py -> build/lib/cryodrgn 2024-04-30T04:30:26,841 copying cryodrgn/so3_grid.py -> build/lib/cryodrgn 2024-04-30T04:30:26,842 copying cryodrgn/analysis.py -> build/lib/cryodrgn 2024-04-30T04:30:26,845 copying cryodrgn/dataset.py -> build/lib/cryodrgn 2024-04-30T04:30:26,847 copying cryodrgn/mrc.py -> build/lib/cryodrgn 2024-04-30T04:30:26,849 copying cryodrgn/command_line.py -> build/lib/cryodrgn 2024-04-30T04:30:26,851 copying cryodrgn/config.py -> build/lib/cryodrgn 2024-04-30T04:30:26,852 copying cryodrgn/starfile.py -> build/lib/cryodrgn 2024-04-30T04:30:26,854 copying cryodrgn/fft.py -> build/lib/cryodrgn 2024-04-30T04:30:26,856 copying cryodrgn/losses.py -> build/lib/cryodrgn 2024-04-30T04:30:26,858 copying cryodrgn/shift_grid.py -> build/lib/cryodrgn 2024-04-30T04:30:26,859 copying cryodrgn/lie_tools.py -> build/lib/cryodrgn 2024-04-30T04:30:26,861 copying cryodrgn/beta_schedule.py -> build/lib/cryodrgn 2024-04-30T04:30:26,863 copying cryodrgn/lattice.py -> build/lib/cryodrgn 2024-04-30T04:30:26,865 copying cryodrgn/_version.py -> build/lib/cryodrgn 2024-04-30T04:30:26,868 creating build/lib/cryodrgn/commands 2024-04-30T04:30:26,869 copying cryodrgn/commands/filter.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,871 copying cryodrgn/commands/parse_pose_csparc.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,873 copying cryodrgn/commands/__init__.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,874 copying cryodrgn/commands/abinit_het.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,877 copying cryodrgn/commands/parse_pose_star.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,879 copying cryodrgn/commands/graph_traversal.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,881 copying cryodrgn/commands/parse_ctf_star.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,883 copying cryodrgn/commands/parse_ctf_csparc.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,885 copying cryodrgn/commands/pc_traversal.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,886 copying cryodrgn/commands/downsample.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,888 copying cryodrgn/commands/eval_images.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,891 copying cryodrgn/commands/backproject_voxel.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,893 copying cryodrgn/commands/abinit_homo.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,896 copying cryodrgn/commands/preprocess.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,898 copying cryodrgn/commands/analyze.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,900 copying cryodrgn/commands/train_nn.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,903 copying cryodrgn/commands/view_config.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,905 copying cryodrgn/commands/analyze_landscape_full.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,907 copying cryodrgn/commands/analyze_landscape.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,909 copying cryodrgn/commands/direct_traversal.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,911 copying cryodrgn/commands/eval_vol.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,913 copying cryodrgn/commands/train_vae.py -> build/lib/cryodrgn/commands 2024-04-30T04:30:26,917 creating build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,918 copying cryodrgn/commands_utils/__init__.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,919 copying cryodrgn/commands_utils/filter_mrcs.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,921 copying cryodrgn/commands_utils/select_clusters.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,922 copying cryodrgn/commands_utils/plot_fsc.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,924 copying cryodrgn/commands_utils/flip_hand.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,926 copying cryodrgn/commands_utils/select_random.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,928 copying cryodrgn/commands_utils/view_mrcs.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,929 copying cryodrgn/commands_utils/filter_pkl.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,931 copying cryodrgn/commands_utils/filter_star.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,933 copying cryodrgn/commands_utils/write_star.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,935 copying cryodrgn/commands_utils/view_cs_header.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,936 copying cryodrgn/commands_utils/add_psize.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,938 copying cryodrgn/commands_utils/view_header.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,940 copying cryodrgn/commands_utils/fsc.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,941 copying cryodrgn/commands_utils/translate_mrcs.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,943 copying cryodrgn/commands_utils/concat_pkls.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,945 copying cryodrgn/commands_utils/gen_mask.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,947 copying cryodrgn/commands_utils/invert_contrast.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,948 copying cryodrgn/commands_utils/write_cs.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,950 copying cryodrgn/commands_utils/phase_flip.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,952 copying cryodrgn/commands_utils/clean.py -> build/lib/cryodrgn/commands_utils 2024-04-30T04:30:26,954 running egg_info 2024-04-30T04:30:26,959 writing cryodrgn.egg-info/PKG-INFO 2024-04-30T04:30:26,967 writing dependency_links to cryodrgn.egg-info/dependency_links.txt 2024-04-30T04:30:26,969 writing entry points to cryodrgn.egg-info/entry_points.txt 2024-04-30T04:30:26,973 writing requirements to cryodrgn.egg-info/requires.txt 2024-04-30T04:30:26,974 writing top-level names to cryodrgn.egg-info/top_level.txt 2024-04-30T04:30:27,011 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-04-30T04:30:27,019 reading manifest file 'cryodrgn.egg-info/SOURCES.txt' 2024-04-30T04:30:27,049 reading manifest template 'MANIFEST.in' 2024-04-30T04:30:27,051 adding license file 'LICENSE.txt' 2024-04-30T04:30:27,064 writing manifest file 'cryodrgn.egg-info/SOURCES.txt' 2024-04-30T04:30:27,077 copying cryodrgn/healpy_grid.json -> build/lib/cryodrgn 2024-04-30T04:30:27,239 creating build/lib/cryodrgn/templates 2024-04-30T04:30:27,240 copying cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/lib/cryodrgn/templates 2024-04-30T04:30:27,243 copying cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/lib/cryodrgn/templates 2024-04-30T04:30:27,245 copying cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/lib/cryodrgn/templates 2024-04-30T04:30:27,248 copying cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/lib/cryodrgn/templates 2024-04-30T04:30:27,251 copying cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/lib/cryodrgn/templates 2024-04-30T04:30:27,269 installing to build/bdist.linux-armv7l/wheel 2024-04-30T04:30:27,269 running install 2024-04-30T04:30:27,295 running install_lib 2024-04-30T04:30:27,301 creating build/bdist.linux-armv7l 2024-04-30T04:30:27,301 creating build/bdist.linux-armv7l/wheel 2024-04-30T04:30:27,304 creating build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,305 copying build/lib/cryodrgn/models.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,308 copying build/lib/cryodrgn/pose_search.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,311 copying build/lib/cryodrgn/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,313 copying build/lib/cryodrgn/shift_grid3.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,314 copying build/lib/cryodrgn/ctf.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,316 copying build/lib/cryodrgn/source.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,319 copying build/lib/cryodrgn/pose.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,321 copying build/lib/cryodrgn/make_healpy.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,323 copying build/lib/cryodrgn/utils.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,325 copying build/lib/cryodrgn/so3_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,327 copying build/lib/cryodrgn/analysis.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,330 copying build/lib/cryodrgn/dataset.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,333 creating build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-04-30T04:30:27,334 copying build/lib/cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-04-30T04:30:27,336 copying build/lib/cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-04-30T04:30:27,339 copying build/lib/cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-04-30T04:30:27,341 copying build/lib/cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-04-30T04:30:27,344 copying build/lib/cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-04-30T04:30:27,346 copying build/lib/cryodrgn/mrc.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,348 copying build/lib/cryodrgn/command_line.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,350 copying build/lib/cryodrgn/config.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,352 copying build/lib/cryodrgn/starfile.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,354 copying build/lib/cryodrgn/fft.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,357 creating build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,357 copying build/lib/cryodrgn/commands/filter.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,360 copying build/lib/cryodrgn/commands/parse_pose_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,362 copying build/lib/cryodrgn/commands/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,363 copying build/lib/cryodrgn/commands/abinit_het.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,366 copying build/lib/cryodrgn/commands/parse_pose_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,368 copying build/lib/cryodrgn/commands/graph_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,370 copying build/lib/cryodrgn/commands/parse_ctf_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,372 copying build/lib/cryodrgn/commands/parse_ctf_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,374 copying build/lib/cryodrgn/commands/pc_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,376 copying build/lib/cryodrgn/commands/downsample.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,378 copying build/lib/cryodrgn/commands/eval_images.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,380 copying build/lib/cryodrgn/commands/backproject_voxel.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,383 copying build/lib/cryodrgn/commands/abinit_homo.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,385 copying build/lib/cryodrgn/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,387 copying build/lib/cryodrgn/commands/analyze.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,390 copying build/lib/cryodrgn/commands/train_nn.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,392 copying build/lib/cryodrgn/commands/view_config.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,394 copying build/lib/cryodrgn/commands/analyze_landscape_full.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,396 copying build/lib/cryodrgn/commands/analyze_landscape.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,399 copying build/lib/cryodrgn/commands/direct_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,401 copying build/lib/cryodrgn/commands/eval_vol.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,403 copying build/lib/cryodrgn/commands/train_vae.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-04-30T04:30:27,406 copying build/lib/cryodrgn/losses.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,407 copying build/lib/cryodrgn/shift_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,409 copying build/lib/cryodrgn/lie_tools.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,411 copying build/lib/cryodrgn/beta_schedule.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,413 copying build/lib/cryodrgn/lattice.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,415 copying build/lib/cryodrgn/healpy_grid.json -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,577 copying build/lib/cryodrgn/_version.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-04-30T04:30:27,579 creating build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,580 copying build/lib/cryodrgn/commands_utils/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,582 copying build/lib/cryodrgn/commands_utils/filter_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,584 copying build/lib/cryodrgn/commands_utils/select_clusters.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,586 copying build/lib/cryodrgn/commands_utils/plot_fsc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,588 copying build/lib/cryodrgn/commands_utils/flip_hand.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,590 copying build/lib/cryodrgn/commands_utils/select_random.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,592 copying build/lib/cryodrgn/commands_utils/view_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,595 copying build/lib/cryodrgn/commands_utils/filter_pkl.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,597 copying build/lib/cryodrgn/commands_utils/filter_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,599 copying build/lib/cryodrgn/commands_utils/write_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,601 copying build/lib/cryodrgn/commands_utils/view_cs_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,603 copying build/lib/cryodrgn/commands_utils/add_psize.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,605 copying build/lib/cryodrgn/commands_utils/view_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,607 copying build/lib/cryodrgn/commands_utils/fsc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,610 copying build/lib/cryodrgn/commands_utils/translate_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,612 copying build/lib/cryodrgn/commands_utils/concat_pkls.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,614 copying build/lib/cryodrgn/commands_utils/gen_mask.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,616 copying build/lib/cryodrgn/commands_utils/invert_contrast.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,618 copying build/lib/cryodrgn/commands_utils/write_cs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,620 copying build/lib/cryodrgn/commands_utils/phase_flip.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,622 copying build/lib/cryodrgn/commands_utils/clean.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-04-30T04:30:27,624 running install_egg_info 2024-04-30T04:30:27,630 Copying cryodrgn.egg-info to build/bdist.linux-armv7l/wheel/cryodrgn-3.3.0-py3.9.egg-info 2024-04-30T04:30:27,644 running install_scripts 2024-04-30T04:30:27,673 creating build/bdist.linux-armv7l/wheel/cryodrgn-3.3.0.dist-info/WHEEL 2024-04-30T04:30:27,676 creating '/tmp/pip-wheel-cmhi7_pl/.tmp-25hmd_8s/cryodrgn-3.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-30T04:30:27,679 adding 'cryodrgn/__init__.py' 2024-04-30T04:30:27,680 adding 'cryodrgn/_version.py' 2024-04-30T04:30:27,684 adding 'cryodrgn/analysis.py' 2024-04-30T04:30:27,685 adding 'cryodrgn/beta_schedule.py' 2024-04-30T04:30:27,687 adding 'cryodrgn/command_line.py' 2024-04-30T04:30:27,689 adding 'cryodrgn/config.py' 2024-04-30T04:30:27,691 adding 'cryodrgn/ctf.py' 2024-04-30T04:30:27,693 adding 'cryodrgn/dataset.py' 2024-04-30T04:30:27,695 adding 'cryodrgn/fft.py' 2024-04-30T04:30:28,480 adding 'cryodrgn/healpy_grid.json' 2024-04-30T04:30:28,545 adding 'cryodrgn/lattice.py' 2024-04-30T04:30:28,547 adding 'cryodrgn/lie_tools.py' 2024-04-30T04:30:28,549 adding 'cryodrgn/losses.py' 2024-04-30T04:30:28,550 adding 'cryodrgn/make_healpy.py' 2024-04-30T04:30:28,555 adding 'cryodrgn/models.py' 2024-04-30T04:30:28,557 adding 'cryodrgn/mrc.py' 2024-04-30T04:30:28,559 adding 'cryodrgn/pose.py' 2024-04-30T04:30:28,562 adding 'cryodrgn/pose_search.py' 2024-04-30T04:30:28,564 adding 'cryodrgn/shift_grid.py' 2024-04-30T04:30:28,565 adding 'cryodrgn/shift_grid3.py' 2024-04-30T04:30:28,567 adding 'cryodrgn/so3_grid.py' 2024-04-30T04:30:28,570 adding 'cryodrgn/source.py' 2024-04-30T04:30:28,572 adding 'cryodrgn/starfile.py' 2024-04-30T04:30:28,574 adding 'cryodrgn/utils.py' 2024-04-30T04:30:28,576 adding 'cryodrgn/commands/__init__.py' 2024-04-30T04:30:28,580 adding 'cryodrgn/commands/abinit_het.py' 2024-04-30T04:30:28,584 adding 'cryodrgn/commands/abinit_homo.py' 2024-04-30T04:30:28,587 adding 'cryodrgn/commands/analyze.py' 2024-04-30T04:30:28,590 adding 'cryodrgn/commands/analyze_landscape.py' 2024-04-30T04:30:28,592 adding 'cryodrgn/commands/analyze_landscape_full.py' 2024-04-30T04:30:28,595 adding 'cryodrgn/commands/backproject_voxel.py' 2024-04-30T04:30:28,596 adding 'cryodrgn/commands/direct_traversal.py' 2024-04-30T04:30:28,598 adding 'cryodrgn/commands/downsample.py' 2024-04-30T04:30:28,601 adding 'cryodrgn/commands/eval_images.py' 2024-04-30T04:30:28,603 adding 'cryodrgn/commands/eval_vol.py' 2024-04-30T04:30:28,605 adding 'cryodrgn/commands/filter.py' 2024-04-30T04:30:28,608 adding 'cryodrgn/commands/graph_traversal.py' 2024-04-30T04:30:28,609 adding 'cryodrgn/commands/parse_ctf_csparc.py' 2024-04-30T04:30:28,611 adding 'cryodrgn/commands/parse_ctf_star.py' 2024-04-30T04:30:28,613 adding 'cryodrgn/commands/parse_pose_csparc.py' 2024-04-30T04:30:28,614 adding 'cryodrgn/commands/parse_pose_star.py' 2024-04-30T04:30:28,616 adding 'cryodrgn/commands/pc_traversal.py' 2024-04-30T04:30:28,618 adding 'cryodrgn/commands/preprocess.py' 2024-04-30T04:30:28,621 adding 'cryodrgn/commands/train_nn.py' 2024-04-30T04:30:28,625 adding 'cryodrgn/commands/train_vae.py' 2024-04-30T04:30:28,627 adding 'cryodrgn/commands/view_config.py' 2024-04-30T04:30:28,629 adding 'cryodrgn/commands_utils/__init__.py' 2024-04-30T04:30:28,631 adding 'cryodrgn/commands_utils/add_psize.py' 2024-04-30T04:30:28,633 adding 'cryodrgn/commands_utils/clean.py' 2024-04-30T04:30:28,635 adding 'cryodrgn/commands_utils/concat_pkls.py' 2024-04-30T04:30:28,636 adding 'cryodrgn/commands_utils/filter_mrcs.py' 2024-04-30T04:30:28,638 adding 'cryodrgn/commands_utils/filter_pkl.py' 2024-04-30T04:30:28,639 adding 'cryodrgn/commands_utils/filter_star.py' 2024-04-30T04:30:28,641 adding 'cryodrgn/commands_utils/flip_hand.py' 2024-04-30T04:30:28,643 adding 'cryodrgn/commands_utils/fsc.py' 2024-04-30T04:30:28,645 adding 'cryodrgn/commands_utils/gen_mask.py' 2024-04-30T04:30:28,646 adding 'cryodrgn/commands_utils/invert_contrast.py' 2024-04-30T04:30:28,648 adding 'cryodrgn/commands_utils/phase_flip.py' 2024-04-30T04:30:28,650 adding 'cryodrgn/commands_utils/plot_fsc.py' 2024-04-30T04:30:28,651 adding 'cryodrgn/commands_utils/select_clusters.py' 2024-04-30T04:30:28,653 adding 'cryodrgn/commands_utils/select_random.py' 2024-04-30T04:30:28,655 adding 'cryodrgn/commands_utils/translate_mrcs.py' 2024-04-30T04:30:28,656 adding 'cryodrgn/commands_utils/view_cs_header.py' 2024-04-30T04:30:28,658 adding 'cryodrgn/commands_utils/view_header.py' 2024-04-30T04:30:28,660 adding 'cryodrgn/commands_utils/view_mrcs.py' 2024-04-30T04:30:28,661 adding 'cryodrgn/commands_utils/write_cs.py' 2024-04-30T04:30:28,663 adding 'cryodrgn/commands_utils/write_star.py' 2024-04-30T04:30:28,667 adding 'cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb' 2024-04-30T04:30:28,669 adding 'cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb' 2024-04-30T04:30:28,671 adding 'cryodrgn/templates/cryoDRGN_figures_template.ipynb' 2024-04-30T04:30:28,674 adding 'cryodrgn/templates/cryoDRGN_filtering_template.ipynb' 2024-04-30T04:30:28,677 adding 'cryodrgn/templates/cryoDRGN_viz_template.ipynb' 2024-04-30T04:30:28,685 adding 'cryodrgn-3.3.0.dist-info/LICENSE.txt' 2024-04-30T04:30:28,690 adding 'cryodrgn-3.3.0.dist-info/METADATA' 2024-04-30T04:30:28,691 adding 'cryodrgn-3.3.0.dist-info/WHEEL' 2024-04-30T04:30:28,693 adding 'cryodrgn-3.3.0.dist-info/entry_points.txt' 2024-04-30T04:30:28,694 adding 'cryodrgn-3.3.0.dist-info/top_level.txt' 2024-04-30T04:30:28,696 adding 'cryodrgn-3.3.0.dist-info/RECORD' 2024-04-30T04:30:28,713 removing build/bdist.linux-armv7l/wheel 2024-04-30T04:30:28,853 Building wheel for cryodrgn (pyproject.toml): finished with status 'done' 2024-04-30T04:30:28,883 Created wheel for cryodrgn: filename=cryodrgn-3.3.0-py3-none-any.whl size=1160348 sha256=8aae2a2c492aa891d21c236a7fbf48e454224d80748853e92d58f624f2bee91a 2024-04-30T04:30:28,884 Stored in directory: /tmp/pip-ephem-wheel-cache-_cjy9akc/wheels/fc/51/85/a4fb6f82cbe90031416509640b73be00877e4ae2d22c1bfa7c 2024-04-30T04:30:28,902 Successfully built cryodrgn 2024-04-30T04:30:28,932 Removed build tracker: '/tmp/pip-build-tracker-rgly2wav'