2024-05-06T23:22:37,137 Created temporary directory: /tmp/pip-build-tracker-fbloql18 2024-05-06T23:22:37,138 Initialized build tracking at /tmp/pip-build-tracker-fbloql18 2024-05-06T23:22:37,139 Created build tracker: /tmp/pip-build-tracker-fbloql18 2024-05-06T23:22:37,139 Entered build tracker: /tmp/pip-build-tracker-fbloql18 2024-05-06T23:22:37,140 Created temporary directory: /tmp/pip-wheel-tlcv8rua 2024-05-06T23:22:37,144 Created temporary directory: /tmp/pip-ephem-wheel-cache-q5n85v73 2024-05-06T23:22:37,166 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-06T23:22:37,170 2 location(s) to search for versions of galaxy-app: 2024-05-06T23:22:37,170 * https://pypi.org/simple/galaxy-app/ 2024-05-06T23:22:37,170 * https://www.piwheels.org/simple/galaxy-app/ 2024-05-06T23:22:37,170 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2024-05-06T23:22:37,171 Getting page https://pypi.org/simple/galaxy-app/ 2024-05-06T23:22:37,173 Found index url https://pypi.org/simple/ 2024-05-06T23:22:37,426 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2024-05-06T23:22:37,433 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.5.0 2024-05-06T23:22:37,434 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0e/45/8db530ec699e0de1e6307285126e8bba3dca8ffe575e9994b0c56aa01e35/galaxy_app-20.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-05-06T23:22:37,435 Found link https://files.pythonhosted.org/packages/39/7b/ed47204e833f922db4fc7e96d8de33650a57856999b95145a9e5414270b1/galaxy-app-20.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.9.0 2024-05-06T23:22:37,436 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/6e/cd07342b2790bc4ec0f3d03eb559fdee76513d00657c2897ad5517615704/galaxy_app-20.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-05-06T23:22:37,436 Found link https://files.pythonhosted.org/packages/bb/d4/bbe8b30220b07000291c571508565a6b2c803c8b3580f4edb50dec7dfb25/galaxy-app-21.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 21.9.0 2024-05-06T23:22:37,437 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2a/c8/f3c20efbe004b6968ac2f89cfc60e77d96b0a45844d864f7d4f84e985b6e/galaxy_app-21.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-05-06T23:22:37,437 Found link https://files.pythonhosted.org/packages/ac/8b/73350a0f611102667eabde41fa8bcd6ffb49ed5a726f6077366504f8bb42/galaxy-app-22.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 22.1.1 2024-05-06T23:22:37,438 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e4/40/ca62a2cd45b022310bd0d4ce05f5ed3d59e8f994d19e31c3fc0410da4b45/galaxy_app-22.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2024-05-06T23:22:37,439 Found link https://files.pythonhosted.org/packages/89/47/4d9cc66c90213feb9f0a8e10fcea2ab93f66d90f289f5e0d72ef6dafcab9/galaxy-app-23.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.1 2024-05-06T23:22:37,439 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d6/1d/9c9721f6bdcb3de36c2f9946af6639696d33f43a3934d9edd95f00d349e5/galaxy_app-23.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,440 Found link https://files.pythonhosted.org/packages/fc/5e/993fc4df93a146b8e11719fd70d92dddf4b5a2e14c2a5006ad5c7320857e/galaxy-app-23.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.2 2024-05-06T23:22:37,441 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7c/cf/3e8752a5c5858f6a096a04d57f31653c5fdbdcb0740ec4f00d29db037a65/galaxy_app-23.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,442 Found link https://files.pythonhosted.org/packages/86/9a/1c845471521630df79226096bed68473fe2e355985ac4c2830ee0f2d6420/galaxy-app-23.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.3 2024-05-06T23:22:37,443 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/08/19/3c5252502bf8984448c6713825aea0efb9ba4de747eb073568b2679afc94/galaxy_app-23.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,444 Found link https://files.pythonhosted.org/packages/7b/69/05dfb348db46268dfd2096cea8f42d37bb0d5f6e55202f684607fc4fa1e2/galaxy-app-23.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.4 2024-05-06T23:22:37,444 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/12/d3/cd3e8e4b280236df34705ac5745d6cb657593b9b6064e6980df863dbfba0/galaxy_app-23.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,445 Found link https://files.pythonhosted.org/packages/9f/d5/eca55f6fa4a9147f5b72dd6a593a0c36280f2bc3a5bf95d95cb4112f92a8/galaxy-app-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.5 2024-05-06T23:22:37,446 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d4/26/d168ceb65d4c9d6ef67c88f061d8eb88d7e845a2f10f10b7d1270d5acb37/galaxy_app-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,446 Found link https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.6 2024-05-06T23:22:37,447 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e8/73/abf8595c6097c3b6ffbe95cd4cdbf404a5cf6ad7b292545cc4d1cb87d4a0/galaxy_app-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,448 Found link https://files.pythonhosted.org/packages/41/07/083718b816053a9f97e5e678ac9bed14b31d3a224026170e58be13f37fba/galaxy-app-23.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.dev0 2024-05-06T23:22:37,449 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7a/89/50a4575db66b638bee6f241f902f556eaa27855d7f0fd3323551bdb09f5d/galaxy_app-23.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,450 Found link https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.1 2024-05-06T23:22:37,450 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c8/f7/a84fe8d48fb96f5e96981ca3f60491f856efa4f2463722fa75ad8dcec7a7/galaxy_app-23.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,451 Found link https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.2 2024-05-06T23:22:37,452 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/54/ef/8264cbce6eca0cd434001d62c838cd4798aa478a6af7879b83299c28193d/galaxy_app-23.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,453 Found link https://files.pythonhosted.org/packages/26/ba/0995031cda92688ec41ab4ad0cc11b148fd5caecf21e414928464bea82f8/galaxy-app-23.1.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.3 2024-05-06T23:22:37,453 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/03/0f/747509841f1baad002247bb2956344ce1ebb9703ab941c149f5456b32c31/galaxy_app-23.1.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,454 Found link https://files.pythonhosted.org/packages/de/63/8be8d20cf1c913da72f9b69af53b711dccc0a998718c2abf93349bdf5301/galaxy-app-23.1.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.4 2024-05-06T23:22:37,455 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/60/97/43d48dc8d2d332faab8a4439b68c7cbbd528f7b9d48c8a0092d60cc5124d/galaxy_app-23.1.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,456 Found link https://files.pythonhosted.org/packages/2f/6c/b024d7c86132a8926709338c49bef02ac75821d997e60030744cf4e65ed0/galaxy-app-23.2.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.2.1 2024-05-06T23:22:37,456 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/b9/89/c6d435aa81c1e8bfc9a11ffe2ce1212d1f7251be748aa684ad150a337b25/galaxy_app-23.2.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,457 Found link https://files.pythonhosted.org/packages/10/8a/8722621711150c5522028ae4f5ecd1a7e12cd7e430a6b9cf2f8f4d1ff409/galaxy-app-24.0.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.0 2024-05-06T23:22:37,458 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/23/72/37370b092b6ea34491efdb854990cba6068b4a3b6eef26947c2ab1274f69/galaxy_app-24.0.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-05-06T23:22:37,458 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/8a/2b/e66673f317e13ca426074d88f5180a2836f281f3c292275db2fdb44d15fe/galaxy_app-24.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-05-06T23:22:37,459 Found link https://files.pythonhosted.org/packages/1b/a9/861c3fdb557700065a00872db1752b8f4797de95325630397f96c99146bd/galaxy_app-24.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.1 2024-05-06T23:22:37,460 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/ 2024-05-06T23:22:37,460 Getting page https://www.piwheels.org/simple/galaxy-app/ 2024-05-06T23:22:37,462 Found index url https://www.piwheels.org/simple/ 2024-05-06T23:22:37,654 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html 2024-05-06T23:22:37,659 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-24.0.0-py3-none-any.whl#sha256=2b9d3bce166e31abb2ffc8c574fc111268b8f1a67dea6324c88de325d8b110d4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2024-05-06T23:22:37,660 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.2.1-py3-none-any.whl#sha256=e37a8c0551dded98be57102c74e99152b15aa0369a4b28287c95e0b0e1b0c7f9 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,660 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.4-py3-none-any.whl#sha256=a0d156aebf5163d1c632ec4c512d86f60cd8848ff63bfdee5e72f0b2b1ea9942 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,661 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.3-py3-none-any.whl#sha256=31efbe6b15793cf934e6d3fa0acf8fa040a1110373f2af602c1384f2fddc61a5 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,661 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.2-py3-none-any.whl#sha256=af60799c6e1c91da02a7b4d1dc70fa1285c49cbb474f15dad9f74fc50ef0d214 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,662 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.1-py3-none-any.whl#sha256=c2a889aa873a367630a84277ea40ae425c8ccfb9d29770e60ed120e11f16287b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,663 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.dev0-py3-none-any.whl#sha256=c9198ae7cb3065b124471a6e7c9b40207d05b9dd860896249bd107558b62eabd (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,663 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.6-py3-none-any.whl#sha256=2c529481de193d71a8c059551d9713d602fa4e7817856a393fc657711fd26a80 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,663 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,664 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,664 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,665 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,665 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2024-05-06T23:22:37,666 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/) 2024-05-06T23:22:37,666 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/) 2024-05-06T23:22:37,667 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/ 2024-05-06T23:22:37,667 Skipping link: not a file: https://pypi.org/simple/galaxy-app/ 2024-05-06T23:22:37,688 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2024-05-06T23:22:37,706 Collecting galaxy-app==24.0.1 2024-05-06T23:22:37,708 Created temporary directory: /tmp/pip-unpack-v5dph4cg 2024-05-06T23:22:37,931 Downloading galaxy_app-24.0.1.tar.gz (1.2 MB) 2024-05-06T23:22:39,424 Added galaxy-app==24.0.1 from https://files.pythonhosted.org/packages/1b/a9/861c3fdb557700065a00872db1752b8f4797de95325630397f96c99146bd/galaxy_app-24.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-fbloql18' 2024-05-06T23:22:39,427 Created temporary directory: /tmp/pip-build-env-k8r6oghg 2024-05-06T23:22:39,432 Installing build dependencies: started 2024-05-06T23:22:39,433 Running command pip subprocess to install build dependencies 2024-05-06T23:22:40,569 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-06T23:22:41,083 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-06T23:22:42,602 Collecting setuptools 2024-05-06T23:22:42,618 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-06T23:22:45,255 Installing collected packages: setuptools 2024-05-06T23:22:47,738 Successfully installed setuptools-69.5.1 2024-05-06T23:22:48,297 Installing build dependencies: finished with status 'done' 2024-05-06T23:22:48,300 Getting requirements to build wheel: started 2024-05-06T23:22:48,302 Running command Getting requirements to build wheel 2024-05-06T23:22:49,002 running egg_info 2024-05-06T23:22:49,006 writing galaxy_app.egg-info/PKG-INFO 2024-05-06T23:22:49,013 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2024-05-06T23:22:49,015 writing entry points to galaxy_app.egg-info/entry_points.txt 2024-05-06T23:22:49,017 writing requirements to galaxy_app.egg-info/requires.txt 2024-05-06T23:22:49,018 writing top-level names to galaxy_app.egg-info/top_level.txt 2024-05-06T23:22:49,106 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-05-06T23:22:49,159 reading manifest template 'MANIFEST.in' 2024-05-06T23:22:49,697 adding license file 'LICENSE' 2024-05-06T23:22:49,724 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-05-06T23:22:49,814 Getting requirements to build wheel: finished with status 'done' 2024-05-06T23:22:49,822 Installing backend dependencies: started 2024-05-06T23:22:49,823 Running command pip subprocess to install backend dependencies 2024-05-06T23:22:50,962 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-06T23:22:51,466 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-06T23:22:51,962 Collecting wheel 2024-05-06T23:22:51,976 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-06T23:22:54,247 Installing collected packages: wheel 2024-05-06T23:22:54,480 Creating /tmp/pip-build-env-k8r6oghg/normal/local/bin 2024-05-06T23:22:54,482 changing mode of /tmp/pip-build-env-k8r6oghg/normal/local/bin/wheel to 755 2024-05-06T23:22:54,494 Successfully installed wheel-0.43.0 2024-05-06T23:22:55,012 Installing backend dependencies: finished with status 'done' 2024-05-06T23:22:55,013 Created temporary directory: /tmp/pip-modern-metadata-h8llepnd 2024-05-06T23:22:55,016 Preparing metadata (pyproject.toml): started 2024-05-06T23:22:55,017 Running command Preparing metadata (pyproject.toml) 2024-05-06T23:22:55,644 running dist_info 2024-05-06T23:22:55,649 creating /tmp/pip-modern-metadata-h8llepnd/galaxy_app.egg-info 2024-05-06T23:22:55,653 writing /tmp/pip-modern-metadata-h8llepnd/galaxy_app.egg-info/PKG-INFO 2024-05-06T23:22:55,661 writing dependency_links to /tmp/pip-modern-metadata-h8llepnd/galaxy_app.egg-info/dependency_links.txt 2024-05-06T23:22:55,663 writing entry points to /tmp/pip-modern-metadata-h8llepnd/galaxy_app.egg-info/entry_points.txt 2024-05-06T23:22:55,665 writing requirements to /tmp/pip-modern-metadata-h8llepnd/galaxy_app.egg-info/requires.txt 2024-05-06T23:22:55,666 writing top-level names to /tmp/pip-modern-metadata-h8llepnd/galaxy_app.egg-info/top_level.txt 2024-05-06T23:22:55,668 writing manifest file '/tmp/pip-modern-metadata-h8llepnd/galaxy_app.egg-info/SOURCES.txt' 2024-05-06T23:22:55,772 reading manifest file '/tmp/pip-modern-metadata-h8llepnd/galaxy_app.egg-info/SOURCES.txt' 2024-05-06T23:22:55,775 reading manifest template 'MANIFEST.in' 2024-05-06T23:22:56,321 adding license file 'LICENSE' 2024-05-06T23:22:56,342 writing manifest file '/tmp/pip-modern-metadata-h8llepnd/galaxy_app.egg-info/SOURCES.txt' 2024-05-06T23:22:56,344 creating '/tmp/pip-modern-metadata-h8llepnd/galaxy_app-24.0.1.dist-info' 2024-05-06T23:22:56,545 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-06T23:22:56,554 Source in /tmp/pip-wheel-tlcv8rua/galaxy-app_5e651f008b454a9aaf8e86f2a9833078 has version 24.0.1, which satisfies requirement galaxy-app==24.0.1 from https://files.pythonhosted.org/packages/1b/a9/861c3fdb557700065a00872db1752b8f4797de95325630397f96c99146bd/galaxy_app-24.0.1.tar.gz 2024-05-06T23:22:56,555 Removed galaxy-app==24.0.1 from https://files.pythonhosted.org/packages/1b/a9/861c3fdb557700065a00872db1752b8f4797de95325630397f96c99146bd/galaxy_app-24.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-fbloql18' 2024-05-06T23:22:56,566 Created temporary directory: /tmp/pip-unpack-_xvuuecn 2024-05-06T23:22:56,567 Created temporary directory: /tmp/pip-unpack-c2it1_dk 2024-05-06T23:22:56,618 Building wheels for collected packages: galaxy-app 2024-05-06T23:22:56,622 Created temporary directory: /tmp/pip-wheel-xrtm6bkd 2024-05-06T23:22:56,623 Destination directory: /tmp/pip-wheel-xrtm6bkd 2024-05-06T23:22:56,625 Building wheel for galaxy-app (pyproject.toml): started 2024-05-06T23:22:56,626 Running command Building wheel for galaxy-app (pyproject.toml) 2024-05-06T23:22:57,248 running bdist_wheel 2024-05-06T23:22:57,291 running build 2024-05-06T23:22:57,292 running build_py 2024-05-06T23:22:57,299 creating build 2024-05-06T23:22:57,299 creating build/lib 2024-05-06T23:22:57,300 creating build/lib/tool_shed_client 2024-05-06T23:22:57,301 copying tool_shed_client/__init__.py -> build/lib/tool_shed_client 2024-05-06T23:22:57,303 copying tool_shed_client/trs_util.py -> build/lib/tool_shed_client 2024-05-06T23:22:57,305 creating build/lib/galaxy_ext 2024-05-06T23:22:57,306 copying galaxy_ext/__init__.py -> build/lib/galaxy_ext 2024-05-06T23:22:57,309 creating build/lib/galaxy 2024-05-06T23:22:57,310 copying galaxy/__init__.py -> build/lib/galaxy 2024-05-06T23:22:57,312 copying galaxy/main_config.py -> build/lib/galaxy 2024-05-06T23:22:57,314 copying galaxy/app.py -> build/lib/galaxy 2024-05-06T23:22:57,317 copying galaxy/structured_app.py -> build/lib/galaxy 2024-05-06T23:22:57,319 copying galaxy/queue_worker.py -> build/lib/galaxy 2024-05-06T23:22:57,322 copying galaxy/queues.py -> build/lib/galaxy 2024-05-06T23:22:57,323 copying galaxy/di.py -> build/lib/galaxy 2024-05-06T23:22:57,325 copying galaxy/config_watchers.py -> build/lib/galaxy 2024-05-06T23:22:57,327 copying galaxy/main.py -> build/lib/galaxy 2024-05-06T23:22:57,330 creating build/lib/tool_shed_client/schema 2024-05-06T23:22:57,331 copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2024-05-06T23:22:57,334 copying tool_shed_client/schema/trs_service_info.py -> build/lib/tool_shed_client/schema 2024-05-06T23:22:57,336 copying tool_shed_client/schema/trs.py -> build/lib/tool_shed_client/schema 2024-05-06T23:22:57,338 creating build/lib/galaxy_ext/expressions 2024-05-06T23:22:57,339 copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2024-05-06T23:22:57,341 copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2024-05-06T23:22:57,343 creating build/lib/galaxy_ext/metadata 2024-05-06T23:22:57,344 copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2024-05-06T23:22:57,346 copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2024-05-06T23:22:57,348 creating build/lib/galaxy_ext/container_monitor 2024-05-06T23:22:57,349 copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2024-05-06T23:22:57,351 copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2024-05-06T23:22:57,353 creating build/lib/galaxy/jobs 2024-05-06T23:22:57,354 copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2024-05-06T23:22:57,358 copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2024-05-06T23:22:57,361 copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2024-05-06T23:22:57,364 copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2024-05-06T23:22:57,366 copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2024-05-06T23:22:57,368 copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2024-05-06T23:22:57,371 copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2024-05-06T23:22:57,373 copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2024-05-06T23:22:57,375 creating build/lib/galaxy/forms 2024-05-06T23:22:57,376 copying galaxy/forms/__init__.py -> build/lib/galaxy/forms 2024-05-06T23:22:57,378 copying galaxy/forms/forms.py -> build/lib/galaxy/forms 2024-05-06T23:22:57,380 creating build/lib/galaxy/actions 2024-05-06T23:22:57,381 copying galaxy/actions/__init__.py -> build/lib/galaxy/actions 2024-05-06T23:22:57,382 copying galaxy/actions/library.py -> build/lib/galaxy/actions 2024-05-06T23:22:57,385 creating build/lib/galaxy/dependencies 2024-05-06T23:22:57,387 copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2024-05-06T23:22:57,391 creating build/lib/galaxy/managers 2024-05-06T23:22:57,392 copying galaxy/managers/cloud.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,395 copying galaxy/managers/ratable.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,396 copying galaxy/managers/__init__.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,398 copying galaxy/managers/context.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,400 copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,402 copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,405 copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,407 copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,409 copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,411 copying galaxy/managers/deletable.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,413 copying galaxy/managers/taggable.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,415 copying galaxy/managers/forms.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,417 copying galaxy/managers/secured.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,419 copying galaxy/managers/group_users.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,421 copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,423 copying galaxy/managers/workflows.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,426 copying galaxy/managers/roles.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,428 copying galaxy/managers/sharable.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,430 copying galaxy/managers/genomes.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,433 copying galaxy/managers/quotas.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,435 copying galaxy/managers/cloudauthzs.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,437 copying galaxy/managers/collections.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,440 copying galaxy/managers/jobs.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,444 copying galaxy/managers/tasks.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,446 copying galaxy/managers/libraries.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,448 copying galaxy/managers/tags.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,450 copying galaxy/managers/licenses.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,452 copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,454 copying galaxy/managers/executables.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,456 copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,458 copying galaxy/managers/datasets.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,461 copying galaxy/managers/notification.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,464 copying galaxy/managers/users.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,466 copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,469 copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,472 copying galaxy/managers/tools.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,474 copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,476 copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,478 copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,480 copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,483 copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,485 copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,487 copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,489 copying galaxy/managers/item_tags.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,491 copying galaxy/managers/configuration.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,493 copying galaxy/managers/session.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,495 copying galaxy/managers/histories.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,497 copying galaxy/managers/base.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,501 copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,503 copying galaxy/managers/folders.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,506 copying galaxy/managers/citations.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,508 copying galaxy/managers/lddas.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,510 copying galaxy/managers/dbkeys.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,513 copying galaxy/managers/hdas.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,515 copying galaxy/managers/pages.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,518 copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,521 copying galaxy/managers/metrics.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,523 copying galaxy/managers/groups.py -> build/lib/galaxy/managers 2024-05-06T23:22:57,526 creating build/lib/galaxy/short_term_storage 2024-05-06T23:22:57,527 copying galaxy/short_term_storage/__init__.py -> build/lib/galaxy/short_term_storage 2024-05-06T23:22:57,531 creating build/lib/galaxy/work 2024-05-06T23:22:57,532 copying galaxy/work/__init__.py -> build/lib/galaxy/work 2024-05-06T23:22:57,534 copying galaxy/work/context.py -> build/lib/galaxy/work 2024-05-06T23:22:57,537 creating build/lib/galaxy/celery 2024-05-06T23:22:57,538 copying galaxy/celery/__init__.py -> build/lib/galaxy/celery 2024-05-06T23:22:57,540 copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2024-05-06T23:22:57,542 copying galaxy/celery/tasks.py -> build/lib/galaxy/celery 2024-05-06T23:22:57,545 copying galaxy/celery/base_task.py -> build/lib/galaxy/celery 2024-05-06T23:22:57,548 creating build/lib/galaxy/webhooks 2024-05-06T23:22:57,549 copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2024-05-06T23:22:57,551 creating build/lib/galaxy/visualization 2024-05-06T23:22:57,553 copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2024-05-06T23:22:57,555 copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2024-05-06T23:22:57,558 creating build/lib/galaxy/authnz 2024-05-06T23:22:57,559 copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2024-05-06T23:22:57,561 copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2024-05-06T23:22:57,565 copying galaxy/authnz/custos_authnz.py -> build/lib/galaxy/authnz 2024-05-06T23:22:57,568 copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2024-05-06T23:22:57,571 copying galaxy/authnz/util.py -> build/lib/galaxy/authnz 2024-05-06T23:22:57,573 creating build/lib/galaxy/workflow 2024-05-06T23:22:57,575 copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2024-05-06T23:22:57,576 copying galaxy/workflow/run.py -> build/lib/galaxy/workflow 2024-05-06T23:22:57,579 copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2024-05-06T23:22:57,583 copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2024-05-06T23:22:57,586 copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2024-05-06T23:22:57,589 copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2024-05-06T23:22:57,591 copying galaxy/workflow/render.py -> build/lib/galaxy/workflow 2024-05-06T23:22:57,594 copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2024-05-06T23:22:57,596 copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2024-05-06T23:22:57,599 creating build/lib/galaxy/app_unittest_utils 2024-05-06T23:22:57,600 copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2024-05-06T23:22:57,602 copying galaxy/app_unittest_utils/toolbox_support.py -> build/lib/galaxy/app_unittest_utils 2024-05-06T23:22:57,604 copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2024-05-06T23:22:57,607 copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2024-05-06T23:22:57,610 creating build/lib/galaxy/tool_shed 2024-05-06T23:22:57,611 copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2024-05-06T23:22:57,613 copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2024-05-06T23:22:57,615 copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2024-05-06T23:22:57,618 creating build/lib/galaxy/carbon_emissions 2024-05-06T23:22:57,619 copying galaxy/carbon_emissions/__init__.py -> build/lib/galaxy/carbon_emissions 2024-05-06T23:22:57,622 creating build/lib/galaxy/tools 2024-05-06T23:22:57,623 copying galaxy/tools/__init__.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,628 copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,631 copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,633 copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,636 copying galaxy/tools/repositories.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,638 copying galaxy/tools/test.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,641 copying galaxy/tools/execute.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,644 copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,646 copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,649 copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,652 copying galaxy/tools/errors.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,655 copying galaxy/tools/cache.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,657 copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,661 copying galaxy/tools/biotools.py -> build/lib/galaxy/tools 2024-05-06T23:22:57,664 creating build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,665 copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,668 copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,671 copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,674 copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,677 copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,679 copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,682 copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,685 copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,687 copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,690 copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,693 copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,696 copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,699 copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,702 copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,705 copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2024-05-06T23:22:57,707 creating build/lib/galaxy/jobs/rules 2024-05-06T23:22:57,709 copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2024-05-06T23:22:57,711 creating build/lib/galaxy/jobs/splitters 2024-05-06T23:22:57,712 copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2024-05-06T23:22:57,714 copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2024-05-06T23:22:57,716 copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2024-05-06T23:22:57,719 creating build/lib/galaxy/jobs/runners/util 2024-05-06T23:22:57,720 copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2024-05-06T23:22:57,722 copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2024-05-06T23:22:57,724 copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2024-05-06T23:22:57,726 copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2024-05-06T23:22:57,728 copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2024-05-06T23:22:57,730 copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2024-05-06T23:22:57,732 copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2024-05-06T23:22:57,734 copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2024-05-06T23:22:57,738 creating build/lib/galaxy/jobs/runners/state_handlers 2024-05-06T23:22:57,739 copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-05-06T23:22:57,741 copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-05-06T23:22:57,743 copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2024-05-06T23:22:57,746 creating build/lib/galaxy/jobs/runners/util/cli 2024-05-06T23:22:57,747 copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2024-05-06T23:22:57,749 copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2024-05-06T23:22:57,752 creating build/lib/galaxy/jobs/runners/util/condor 2024-05-06T23:22:57,753 copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2024-05-06T23:22:57,755 creating build/lib/galaxy/jobs/runners/util/job_script 2024-05-06T23:22:57,757 copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2024-05-06T23:22:57,760 creating build/lib/galaxy/jobs/runners/util/cli/shell 2024-05-06T23:22:57,761 copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-05-06T23:22:57,763 copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-05-06T23:22:57,765 copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2024-05-06T23:22:57,769 creating build/lib/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:57,770 copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:57,772 copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:57,774 copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:57,777 copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:57,779 copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:57,781 copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:57,783 creating build/lib/galaxy/visualization/tracks 2024-05-06T23:22:57,785 copying galaxy/visualization/tracks/__init__.py -> build/lib/galaxy/visualization/tracks 2024-05-06T23:22:57,787 creating build/lib/galaxy/visualization/genome 2024-05-06T23:22:57,792 copying galaxy/visualization/genome/__init__.py -> build/lib/galaxy/visualization/genome 2024-05-06T23:22:57,794 creating build/lib/galaxy/visualization/plugins 2024-05-06T23:22:57,795 copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2024-05-06T23:22:57,797 copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2024-05-06T23:22:57,800 copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2024-05-06T23:22:57,805 copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2024-05-06T23:22:57,808 copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2024-05-06T23:22:57,810 copying galaxy/visualization/plugins/utils.py -> build/lib/galaxy/visualization/plugins 2024-05-06T23:22:57,812 creating build/lib/galaxy/visualization/data_providers 2024-05-06T23:22:57,814 copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2024-05-06T23:22:57,816 copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2024-05-06T23:22:57,818 copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2024-05-06T23:22:57,820 copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2024-05-06T23:22:57,823 copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2024-05-06T23:22:57,826 creating build/lib/galaxy/visualization/data_providers/phyloviz 2024-05-06T23:22:57,827 copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-05-06T23:22:57,830 copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-05-06T23:22:57,833 copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-05-06T23:22:57,836 copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-05-06T23:22:57,838 copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2024-05-06T23:22:57,841 creating build/lib/galaxy/workflow/schedulers 2024-05-06T23:22:57,842 copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2024-05-06T23:22:57,844 copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2024-05-06T23:22:57,846 creating build/lib/galaxy/workflow/refactor 2024-05-06T23:22:57,847 copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2024-05-06T23:22:57,849 copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2024-05-06T23:22:57,852 copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2024-05-06T23:22:57,855 creating build/lib/galaxy/workflow/reports 2024-05-06T23:22:57,856 copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2024-05-06T23:22:57,858 creating build/lib/galaxy/workflow/resources 2024-05-06T23:22:57,859 copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2024-05-06T23:22:57,862 creating build/lib/galaxy/workflow/reports/generators 2024-05-06T23:22:57,863 copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2024-05-06T23:22:57,865 copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2024-05-06T23:22:57,868 creating build/lib/galaxy/tool_shed/util 2024-05-06T23:22:57,868 copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2024-05-06T23:22:57,870 copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2024-05-06T23:22:57,872 copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2024-05-06T23:22:57,874 copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2024-05-06T23:22:57,877 copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2024-05-06T23:22:57,879 copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2024-05-06T23:22:57,881 copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2024-05-06T23:22:57,883 copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2024-05-06T23:22:57,886 copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2024-05-06T23:22:57,889 copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2024-05-06T23:22:57,892 copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2024-05-06T23:22:57,895 creating build/lib/galaxy/tool_shed/galaxy_install 2024-05-06T23:22:57,896 copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-05-06T23:22:57,898 copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-05-06T23:22:57,901 copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-05-06T23:22:57,903 copying galaxy/tool_shed/galaxy_install/client.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-05-06T23:22:57,905 copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2024-05-06T23:22:57,909 creating build/lib/galaxy/tool_shed/metadata 2024-05-06T23:22:57,910 copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2024-05-06T23:22:57,912 copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2024-05-06T23:22:57,916 creating build/lib/galaxy/tool_shed/unittest_utils 2024-05-06T23:22:57,917 copying galaxy/tool_shed/unittest_utils/__init__.py -> build/lib/galaxy/tool_shed/unittest_utils 2024-05-06T23:22:57,920 creating build/lib/galaxy/tool_shed/tools 2024-05-06T23:22:57,921 copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2024-05-06T23:22:57,923 copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2024-05-06T23:22:57,925 copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2024-05-06T23:22:57,928 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-05-06T23:22:57,929 copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-05-06T23:22:57,931 copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2024-05-06T23:22:57,935 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-05-06T23:22:57,936 copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-05-06T23:22:57,938 copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-05-06T23:22:57,942 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2024-05-06T23:22:57,943 copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-05-06T23:22:57,946 copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-05-06T23:22:57,948 copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2024-05-06T23:22:57,950 creating build/lib/galaxy/tools/util 2024-05-06T23:22:57,952 copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2024-05-06T23:22:57,953 copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2024-05-06T23:22:57,957 creating build/lib/galaxy/tools/expressions 2024-05-06T23:22:57,958 copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2024-05-06T23:22:57,960 copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2024-05-06T23:22:57,962 copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2024-05-06T23:22:57,964 copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2024-05-06T23:22:57,966 creating build/lib/galaxy/tools/data 2024-05-06T23:22:57,968 copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2024-05-06T23:22:57,971 creating build/lib/galaxy/tools/search 2024-05-06T23:22:57,972 copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2024-05-06T23:22:57,975 creating build/lib/galaxy/tools/data_manager 2024-05-06T23:22:57,976 copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2024-05-06T23:22:57,978 copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2024-05-06T23:22:57,982 creating build/lib/galaxy/tools/actions 2024-05-06T23:22:57,983 copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2024-05-06T23:22:57,987 copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2024-05-06T23:22:57,989 copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2024-05-06T23:22:57,991 copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2024-05-06T23:22:57,994 copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2024-05-06T23:22:57,996 copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2024-05-06T23:22:57,998 copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2024-05-06T23:22:58,001 copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2024-05-06T23:22:58,004 creating build/lib/galaxy/tools/error_reports 2024-05-06T23:22:58,005 copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2024-05-06T23:22:58,008 creating build/lib/galaxy/tools/filters 2024-05-06T23:22:58,009 copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2024-05-06T23:22:58,012 creating build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,013 copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,016 copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,019 copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,021 copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,024 copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,028 copying galaxy/tools/parameters/history_query.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,030 copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,033 copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,035 copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,038 copying galaxy/tools/parameters/cancelable_request.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,039 copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,042 copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,044 copying galaxy/tools/parameters/workflow_utils.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,046 copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2024-05-06T23:22:58,050 creating build/lib/galaxy/tools/imp_exp 2024-05-06T23:22:58,051 copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2024-05-06T23:22:58,053 copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2024-05-06T23:22:58,055 copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2024-05-06T23:22:58,057 creating build/lib/galaxy/tools/util/galaxyops 2024-05-06T23:22:58,058 copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2024-05-06T23:22:58,062 creating build/lib/galaxy/tools/error_reports/plugins 2024-05-06T23:22:58,063 copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2024-05-06T23:22:58,065 copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins 2024-05-06T23:22:58,067 copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2024-05-06T23:22:58,070 copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2024-05-06T23:22:58,072 copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2024-05-06T23:22:58,074 copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2024-05-06T23:22:58,077 copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2024-05-06T23:22:58,080 copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2024-05-06T23:22:58,082 copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2024-05-06T23:22:58,085 running egg_info 2024-05-06T23:22:58,089 writing galaxy_app.egg-info/PKG-INFO 2024-05-06T23:22:58,097 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2024-05-06T23:22:58,099 writing entry points to galaxy_app.egg-info/entry_points.txt 2024-05-06T23:22:58,102 writing requirements to galaxy_app.egg-info/requires.txt 2024-05-06T23:22:58,103 writing top-level names to galaxy_app.egg-info/top_level.txt 2024-05-06T23:22:58,175 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-05-06T23:22:58,189 reading manifest template 'MANIFEST.in' 2024-05-06T23:22:58,724 adding license file 'LICENSE' 2024-05-06T23:22:58,751 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2024-05-06T23:22:58,757 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2024-05-06T23:22:58,757 !! 2024-05-06T23:22:58,758 ******************************************************************************** 2024-05-06T23:22:58,759 ############################ 2024-05-06T23:22:58,759 # Package would be ignored # 2024-05-06T23:22:58,760 ############################ 2024-05-06T23:22:58,761 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2024-05-06T23:22:58,761 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:58,762 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:58,763 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2024-05-06T23:22:58,764 to the `packages` configuration field. 2024-05-06T23:22:58,765 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:58,765 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:58,766 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:58,766 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:58,767 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:58,768 If you don't want 'galaxy.tools.bundled' to be distributed and are 2024-05-06T23:22:58,769 already explicitly excluding 'galaxy.tools.bundled' via 2024-05-06T23:22:58,769 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:58,769 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:58,770 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:58,771 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:58,772 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:58,773 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:58,774 even if it does not contain any `.py` files. 2024-05-06T23:22:58,774 On the other hand, currently there is no concept of package data 2024-05-06T23:22:58,775 directory, all directories are treated like packages. 2024-05-06T23:22:58,775 ******************************************************************************** 2024-05-06T23:22:58,776 !! 2024-05-06T23:22:58,777 check.warn(importable) 2024-05-06T23:22:58,777 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2024-05-06T23:22:58,778 !! 2024-05-06T23:22:58,779 ******************************************************************************** 2024-05-06T23:22:58,780 ############################ 2024-05-06T23:22:58,780 # Package would be ignored # 2024-05-06T23:22:58,781 ############################ 2024-05-06T23:22:58,781 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2024-05-06T23:22:58,782 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:58,783 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:58,783 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2024-05-06T23:22:58,784 to the `packages` configuration field. 2024-05-06T23:22:58,785 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:58,785 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:58,786 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:58,787 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:58,788 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:58,789 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2024-05-06T23:22:58,790 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2024-05-06T23:22:58,790 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:58,791 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:58,793 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:58,794 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:58,796 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:58,797 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:58,798 even if it does not contain any `.py` files. 2024-05-06T23:22:58,798 On the other hand, currently there is no concept of package data 2024-05-06T23:22:58,799 directory, all directories are treated like packages. 2024-05-06T23:22:58,799 ******************************************************************************** 2024-05-06T23:22:58,800 !! 2024-05-06T23:22:58,800 check.warn(importable) 2024-05-06T23:22:58,801 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2024-05-06T23:22:58,801 !! 2024-05-06T23:22:58,802 ******************************************************************************** 2024-05-06T23:22:58,803 ############################ 2024-05-06T23:22:58,804 # Package would be ignored # 2024-05-06T23:22:58,804 ############################ 2024-05-06T23:22:58,805 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2024-05-06T23:22:58,805 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:58,806 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:58,807 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2024-05-06T23:22:58,808 to the `packages` configuration field. 2024-05-06T23:22:58,808 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:58,809 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:58,809 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:58,810 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:58,811 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:58,812 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2024-05-06T23:22:58,813 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2024-05-06T23:22:58,813 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:58,814 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:58,814 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:58,815 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:58,816 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:58,818 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:58,818 even if it does not contain any `.py` files. 2024-05-06T23:22:58,819 On the other hand, currently there is no concept of package data 2024-05-06T23:22:58,819 directory, all directories are treated like packages. 2024-05-06T23:22:58,820 ******************************************************************************** 2024-05-06T23:22:58,821 !! 2024-05-06T23:22:58,821 check.warn(importable) 2024-05-06T23:22:58,822 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2024-05-06T23:22:58,822 !! 2024-05-06T23:22:58,824 ******************************************************************************** 2024-05-06T23:22:58,824 ############################ 2024-05-06T23:22:58,825 # Package would be ignored # 2024-05-06T23:22:58,825 ############################ 2024-05-06T23:22:58,826 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2024-05-06T23:22:58,826 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:58,827 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:58,827 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2024-05-06T23:22:58,828 to the `packages` configuration field. 2024-05-06T23:22:58,829 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:58,829 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:58,830 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:58,831 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:58,831 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:58,833 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2024-05-06T23:22:58,833 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2024-05-06T23:22:58,833 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:58,834 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:58,834 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:58,835 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:58,836 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:58,838 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:58,838 even if it does not contain any `.py` files. 2024-05-06T23:22:58,839 On the other hand, currently there is no concept of package data 2024-05-06T23:22:58,839 directory, all directories are treated like packages. 2024-05-06T23:22:58,840 ******************************************************************************** 2024-05-06T23:22:58,841 !! 2024-05-06T23:22:58,841 check.warn(importable) 2024-05-06T23:22:58,842 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2024-05-06T23:22:58,842 !! 2024-05-06T23:22:58,844 ******************************************************************************** 2024-05-06T23:22:58,844 ############################ 2024-05-06T23:22:58,845 # Package would be ignored # 2024-05-06T23:22:58,845 ############################ 2024-05-06T23:22:58,846 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2024-05-06T23:22:58,847 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:58,848 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:58,848 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2024-05-06T23:22:58,849 to the `packages` configuration field. 2024-05-06T23:22:58,850 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:58,850 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:58,851 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:58,852 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:58,853 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:58,854 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2024-05-06T23:22:58,854 already explicitly excluding 'galaxy.tools.bundled.extract' via 2024-05-06T23:22:58,855 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:58,855 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:58,856 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:58,857 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:58,858 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:58,859 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:58,860 even if it does not contain any `.py` files. 2024-05-06T23:22:58,860 On the other hand, currently there is no concept of package data 2024-05-06T23:22:58,861 directory, all directories are treated like packages. 2024-05-06T23:22:58,861 ******************************************************************************** 2024-05-06T23:22:58,862 !! 2024-05-06T23:22:58,863 check.warn(importable) 2024-05-06T23:22:58,863 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2024-05-06T23:22:58,864 !! 2024-05-06T23:22:58,865 ******************************************************************************** 2024-05-06T23:22:58,865 ############################ 2024-05-06T23:22:58,866 # Package would be ignored # 2024-05-06T23:22:58,867 ############################ 2024-05-06T23:22:58,867 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2024-05-06T23:22:58,868 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:58,869 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:58,870 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2024-05-06T23:22:58,870 to the `packages` configuration field. 2024-05-06T23:22:58,871 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:58,872 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:58,873 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:58,874 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:58,875 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:58,876 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2024-05-06T23:22:58,877 already explicitly excluding 'galaxy.tools.bundled.filters' via 2024-05-06T23:22:58,879 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:58,880 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:58,881 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:58,882 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:58,883 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:58,885 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:58,885 even if it does not contain any `.py` files. 2024-05-06T23:22:58,886 On the other hand, currently there is no concept of package data 2024-05-06T23:22:58,887 directory, all directories are treated like packages. 2024-05-06T23:22:58,887 ******************************************************************************** 2024-05-06T23:22:58,888 !! 2024-05-06T23:22:58,888 check.warn(importable) 2024-05-06T23:22:58,889 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2024-05-06T23:22:58,889 !! 2024-05-06T23:22:58,890 ******************************************************************************** 2024-05-06T23:22:58,891 ############################ 2024-05-06T23:22:58,891 # Package would be ignored # 2024-05-06T23:22:58,891 ############################ 2024-05-06T23:22:58,892 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2024-05-06T23:22:58,892 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:58,893 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:58,894 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2024-05-06T23:22:58,894 to the `packages` configuration field. 2024-05-06T23:22:58,895 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:58,895 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:58,896 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:58,897 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:58,898 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:58,899 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2024-05-06T23:22:58,899 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2024-05-06T23:22:58,899 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:58,900 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:58,900 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:58,901 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:58,902 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:58,904 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:58,904 even if it does not contain any `.py` files. 2024-05-06T23:22:58,905 On the other hand, currently there is no concept of package data 2024-05-06T23:22:58,905 directory, all directories are treated like packages. 2024-05-06T23:22:58,906 ******************************************************************************** 2024-05-06T23:22:58,907 !! 2024-05-06T23:22:58,907 check.warn(importable) 2024-05-06T23:22:58,908 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2024-05-06T23:22:58,908 !! 2024-05-06T23:22:58,909 ******************************************************************************** 2024-05-06T23:22:58,910 ############################ 2024-05-06T23:22:58,911 # Package would be ignored # 2024-05-06T23:22:58,911 ############################ 2024-05-06T23:22:58,912 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2024-05-06T23:22:58,912 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:58,914 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:58,914 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2024-05-06T23:22:58,914 to the `packages` configuration field. 2024-05-06T23:22:58,915 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:58,916 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:58,916 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:58,917 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:58,918 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:58,919 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2024-05-06T23:22:58,920 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2024-05-06T23:22:58,920 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:58,920 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:58,921 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:58,922 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:58,923 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:58,924 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:58,925 even if it does not contain any `.py` files. 2024-05-06T23:22:58,925 On the other hand, currently there is no concept of package data 2024-05-06T23:22:58,926 directory, all directories are treated like packages. 2024-05-06T23:22:58,926 ******************************************************************************** 2024-05-06T23:22:58,927 !! 2024-05-06T23:22:58,928 check.warn(importable) 2024-05-06T23:22:58,928 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2024-05-06T23:22:58,929 !! 2024-05-06T23:22:58,930 ******************************************************************************** 2024-05-06T23:22:58,930 ############################ 2024-05-06T23:22:58,931 # Package would be ignored # 2024-05-06T23:22:58,932 ############################ 2024-05-06T23:22:58,932 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2024-05-06T23:22:58,933 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:58,934 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:58,934 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2024-05-06T23:22:58,935 to the `packages` configuration field. 2024-05-06T23:22:58,936 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:58,936 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:58,937 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:58,938 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:58,939 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:58,940 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2024-05-06T23:22:58,940 already explicitly excluding 'galaxy.tools.bundled.maf' via 2024-05-06T23:22:58,941 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:58,941 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:58,942 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:58,943 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:58,944 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:58,945 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:58,946 even if it does not contain any `.py` files. 2024-05-06T23:22:58,946 On the other hand, currently there is no concept of package data 2024-05-06T23:22:58,946 directory, all directories are treated like packages. 2024-05-06T23:22:58,947 ******************************************************************************** 2024-05-06T23:22:58,948 !! 2024-05-06T23:22:58,948 check.warn(importable) 2024-05-06T23:22:58,949 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2024-05-06T23:22:58,949 !! 2024-05-06T23:22:58,950 ******************************************************************************** 2024-05-06T23:22:58,950 ############################ 2024-05-06T23:22:58,951 # Package would be ignored # 2024-05-06T23:22:58,951 ############################ 2024-05-06T23:22:58,952 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2024-05-06T23:22:58,952 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:58,953 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:58,954 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2024-05-06T23:22:58,954 to the `packages` configuration field. 2024-05-06T23:22:58,955 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:58,955 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:58,956 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:58,957 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:58,958 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:58,959 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2024-05-06T23:22:58,959 already explicitly excluding 'galaxy.tools.bundled.meme' via 2024-05-06T23:22:58,960 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:58,960 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:58,961 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:58,962 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:58,963 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:58,964 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:58,965 even if it does not contain any `.py` files. 2024-05-06T23:22:58,965 On the other hand, currently there is no concept of package data 2024-05-06T23:22:58,966 directory, all directories are treated like packages. 2024-05-06T23:22:58,966 ******************************************************************************** 2024-05-06T23:22:58,967 !! 2024-05-06T23:22:58,968 check.warn(importable) 2024-05-06T23:22:58,968 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2024-05-06T23:22:58,969 !! 2024-05-06T23:22:58,970 ******************************************************************************** 2024-05-06T23:22:58,970 ############################ 2024-05-06T23:22:58,971 # Package would be ignored # 2024-05-06T23:22:58,971 ############################ 2024-05-06T23:22:58,971 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2024-05-06T23:22:58,972 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:58,973 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:58,973 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2024-05-06T23:22:58,973 to the `packages` configuration field. 2024-05-06T23:22:58,974 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:58,975 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:58,975 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:58,976 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:58,977 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:58,978 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2024-05-06T23:22:58,978 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2024-05-06T23:22:58,978 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:58,979 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:58,979 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:58,980 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:58,981 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:58,982 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:58,983 even if it does not contain any `.py` files. 2024-05-06T23:22:58,983 On the other hand, currently there is no concept of package data 2024-05-06T23:22:58,984 directory, all directories are treated like packages. 2024-05-06T23:22:58,984 ******************************************************************************** 2024-05-06T23:22:58,985 !! 2024-05-06T23:22:58,986 check.warn(importable) 2024-05-06T23:22:58,986 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2024-05-06T23:22:58,987 !! 2024-05-06T23:22:58,988 ******************************************************************************** 2024-05-06T23:22:58,988 ############################ 2024-05-06T23:22:58,989 # Package would be ignored # 2024-05-06T23:22:58,989 ############################ 2024-05-06T23:22:58,990 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2024-05-06T23:22:58,990 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:58,991 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:58,992 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2024-05-06T23:22:58,992 to the `packages` configuration field. 2024-05-06T23:22:58,993 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:58,993 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:58,994 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:58,995 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:58,996 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:58,997 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2024-05-06T23:22:58,997 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2024-05-06T23:22:58,997 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:58,998 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:58,998 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:58,999 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:59,000 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:59,001 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:59,002 even if it does not contain any `.py` files. 2024-05-06T23:22:59,002 On the other hand, currently there is no concept of package data 2024-05-06T23:22:59,003 directory, all directories are treated like packages. 2024-05-06T23:22:59,003 ******************************************************************************** 2024-05-06T23:22:59,004 !! 2024-05-06T23:22:59,005 check.warn(importable) 2024-05-06T23:22:59,005 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2024-05-06T23:22:59,006 !! 2024-05-06T23:22:59,007 ******************************************************************************** 2024-05-06T23:22:59,007 ############################ 2024-05-06T23:22:59,008 # Package would be ignored # 2024-05-06T23:22:59,008 ############################ 2024-05-06T23:22:59,009 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2024-05-06T23:22:59,009 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:59,010 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:59,011 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2024-05-06T23:22:59,011 to the `packages` configuration field. 2024-05-06T23:22:59,012 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:59,013 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:59,013 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:59,014 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:59,015 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:59,016 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2024-05-06T23:22:59,017 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2024-05-06T23:22:59,017 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:59,018 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:59,018 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:59,019 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:59,020 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:59,022 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:59,022 even if it does not contain any `.py` files. 2024-05-06T23:22:59,023 On the other hand, currently there is no concept of package data 2024-05-06T23:22:59,024 directory, all directories are treated like packages. 2024-05-06T23:22:59,024 ******************************************************************************** 2024-05-06T23:22:59,025 !! 2024-05-06T23:22:59,025 check.warn(importable) 2024-05-06T23:22:59,026 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2024-05-06T23:22:59,026 !! 2024-05-06T23:22:59,027 ******************************************************************************** 2024-05-06T23:22:59,027 ############################ 2024-05-06T23:22:59,028 # Package would be ignored # 2024-05-06T23:22:59,028 ############################ 2024-05-06T23:22:59,029 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2024-05-06T23:22:59,029 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:59,030 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:59,030 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2024-05-06T23:22:59,031 to the `packages` configuration field. 2024-05-06T23:22:59,032 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:59,032 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:59,033 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:59,034 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:59,035 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:59,037 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2024-05-06T23:22:59,038 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2024-05-06T23:22:59,038 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:59,038 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:59,039 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:59,040 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:59,041 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:59,043 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:59,043 even if it does not contain any `.py` files. 2024-05-06T23:22:59,044 On the other hand, currently there is no concept of package data 2024-05-06T23:22:59,044 directory, all directories are treated like packages. 2024-05-06T23:22:59,045 ******************************************************************************** 2024-05-06T23:22:59,046 !! 2024-05-06T23:22:59,046 check.warn(importable) 2024-05-06T23:22:59,047 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2024-05-06T23:22:59,047 !! 2024-05-06T23:22:59,048 ******************************************************************************** 2024-05-06T23:22:59,049 ############################ 2024-05-06T23:22:59,049 # Package would be ignored # 2024-05-06T23:22:59,050 ############################ 2024-05-06T23:22:59,050 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2024-05-06T23:22:59,051 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:59,052 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:59,053 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2024-05-06T23:22:59,053 to the `packages` configuration field. 2024-05-06T23:22:59,054 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:59,054 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:59,055 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:59,056 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:59,057 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:59,058 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2024-05-06T23:22:59,059 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2024-05-06T23:22:59,059 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:59,059 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:59,060 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:59,061 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:59,062 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:59,064 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:59,064 even if it does not contain any `.py` files. 2024-05-06T23:22:59,065 On the other hand, currently there is no concept of package data 2024-05-06T23:22:59,065 directory, all directories are treated like packages. 2024-05-06T23:22:59,066 ******************************************************************************** 2024-05-06T23:22:59,067 !! 2024-05-06T23:22:59,067 check.warn(importable) 2024-05-06T23:22:59,068 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2024-05-06T23:22:59,068 !! 2024-05-06T23:22:59,070 ******************************************************************************** 2024-05-06T23:22:59,070 ############################ 2024-05-06T23:22:59,071 # Package would be ignored # 2024-05-06T23:22:59,071 ############################ 2024-05-06T23:22:59,072 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2024-05-06T23:22:59,072 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:59,073 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:59,074 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2024-05-06T23:22:59,074 to the `packages` configuration field. 2024-05-06T23:22:59,075 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:59,076 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:59,077 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:59,078 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:59,079 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:59,080 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2024-05-06T23:22:59,080 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2024-05-06T23:22:59,081 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:59,082 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:59,082 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:59,083 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:59,084 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:59,086 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:59,086 even if it does not contain any `.py` files. 2024-05-06T23:22:59,087 On the other hand, currently there is no concept of package data 2024-05-06T23:22:59,087 directory, all directories are treated like packages. 2024-05-06T23:22:59,088 ******************************************************************************** 2024-05-06T23:22:59,089 !! 2024-05-06T23:22:59,089 check.warn(importable) 2024-05-06T23:22:59,090 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2024-05-06T23:22:59,090 !! 2024-05-06T23:22:59,091 ******************************************************************************** 2024-05-06T23:22:59,092 ############################ 2024-05-06T23:22:59,093 # Package would be ignored # 2024-05-06T23:22:59,093 ############################ 2024-05-06T23:22:59,093 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2024-05-06T23:22:59,094 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:59,095 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:59,096 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2024-05-06T23:22:59,096 to the `packages` configuration field. 2024-05-06T23:22:59,097 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:59,098 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:59,098 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:59,099 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:59,100 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:59,101 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2024-05-06T23:22:59,102 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2024-05-06T23:22:59,102 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:59,103 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:59,103 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:59,104 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:59,105 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:59,107 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:59,107 even if it does not contain any `.py` files. 2024-05-06T23:22:59,108 On the other hand, currently there is no concept of package data 2024-05-06T23:22:59,108 directory, all directories are treated like packages. 2024-05-06T23:22:59,109 ******************************************************************************** 2024-05-06T23:22:59,110 !! 2024-05-06T23:22:59,111 check.warn(importable) 2024-05-06T23:22:59,111 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2024-05-06T23:22:59,112 !! 2024-05-06T23:22:59,113 ******************************************************************************** 2024-05-06T23:22:59,113 ############################ 2024-05-06T23:22:59,114 # Package would be ignored # 2024-05-06T23:22:59,114 ############################ 2024-05-06T23:22:59,115 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2024-05-06T23:22:59,116 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:59,116 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:59,117 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2024-05-06T23:22:59,117 to the `packages` configuration field. 2024-05-06T23:22:59,118 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:59,119 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:59,119 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:59,120 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:59,121 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:59,122 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2024-05-06T23:22:59,123 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2024-05-06T23:22:59,124 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:59,124 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:59,125 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:59,125 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:59,126 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:59,128 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:59,128 even if it does not contain any `.py` files. 2024-05-06T23:22:59,129 On the other hand, currently there is no concept of package data 2024-05-06T23:22:59,129 directory, all directories are treated like packages. 2024-05-06T23:22:59,130 ******************************************************************************** 2024-05-06T23:22:59,131 !! 2024-05-06T23:22:59,131 check.warn(importable) 2024-05-06T23:22:59,132 /tmp/pip-build-env-k8r6oghg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2024-05-06T23:22:59,132 !! 2024-05-06T23:22:59,133 ******************************************************************************** 2024-05-06T23:22:59,134 ############################ 2024-05-06T23:22:59,134 # Package would be ignored # 2024-05-06T23:22:59,135 ############################ 2024-05-06T23:22:59,135 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2024-05-06T23:22:59,136 but it is absent from setuptools' `packages` configuration. 2024-05-06T23:22:59,137 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-06T23:22:59,137 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2024-05-06T23:22:59,138 to the `packages` configuration field. 2024-05-06T23:22:59,139 Alternatively, you can also rely on setuptools' discovery methods 2024-05-06T23:22:59,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-06T23:22:59,141 instead of `find_packages(...)`/`find:`). 2024-05-06T23:22:59,142 You can read more about "package discovery" on setuptools documentation page: 2024-05-06T23:22:59,143 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-06T23:22:59,144 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2024-05-06T23:22:59,144 already explicitly excluding 'galaxy.tools.bundled.stats' via 2024-05-06T23:22:59,145 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-06T23:22:59,145 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-06T23:22:59,146 combination with a more fine grained `package-data` configuration. 2024-05-06T23:22:59,147 You can read more about "package data files" on setuptools documentation page: 2024-05-06T23:22:59,148 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-06T23:22:59,149 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-06T23:22:59,149 even if it does not contain any `.py` files. 2024-05-06T23:22:59,150 On the other hand, currently there is no concept of package data 2024-05-06T23:22:59,150 directory, all directories are treated like packages. 2024-05-06T23:22:59,151 ******************************************************************************** 2024-05-06T23:22:59,152 !! 2024-05-06T23:22:59,152 check.warn(importable) 2024-05-06T23:22:59,153 copying tool_shed_client/py.typed -> build/lib/tool_shed_client 2024-05-06T23:22:59,153 copying galaxy_ext/py.typed -> build/lib/galaxy_ext 2024-05-06T23:22:59,153 copying galaxy/py.typed -> build/lib/galaxy 2024-05-06T23:22:59,154 copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2024-05-06T23:22:59,155 copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2024-05-06T23:22:59,155 copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2024-05-06T23:22:59,156 copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2024-05-06T23:22:59,156 copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2024-05-06T23:22:59,157 copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2024-05-06T23:22:59,157 copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2024-05-06T23:22:59,158 copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2024-05-06T23:22:59,158 copying galaxy/managers/licenses.json -> build/lib/galaxy/managers 2024-05-06T23:22:59,159 copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2024-05-06T23:22:59,159 copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,160 copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,160 copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,161 copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,161 copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,162 copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,162 copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,163 copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,163 copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,164 copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,164 copying galaxy/tools/harmonize_two_collections_list.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,165 copying galaxy/tools/keep_success_collection.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,165 copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,166 copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,167 copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,167 copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,167 copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,168 copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2024-05-06T23:22:59,168 creating build/lib/galaxy/tools/bundled 2024-05-06T23:22:59,169 copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2024-05-06T23:22:59,169 creating build/lib/galaxy/tools/bundled/data_export 2024-05-06T23:22:59,170 copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2024-05-06T23:22:59,170 copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2024-05-06T23:22:59,171 copying galaxy/tools/bundled/data_export/send.py -> build/lib/galaxy/tools/bundled/data_export 2024-05-06T23:22:59,171 copying galaxy/tools/bundled/data_export/send.xml -> build/lib/galaxy/tools/bundled/data_export 2024-05-06T23:22:59,172 creating build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,172 copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,173 copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,173 copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,174 copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,174 copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,175 copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,175 copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,176 copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,176 copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,177 copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,177 copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,178 copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,178 copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,179 copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,179 copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,180 copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,180 copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,181 copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,181 copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,182 copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,182 copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,183 copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,184 copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,184 copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,184 copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,185 copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,185 copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,186 copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,186 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,187 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,187 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,188 copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,188 copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,189 copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,189 copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,190 copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,190 copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,191 copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2024-05-06T23:22:59,191 creating build/lib/galaxy/tools/bundled/expression_tools 2024-05-06T23:22:59,192 copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-05-06T23:22:59,192 copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-05-06T23:22:59,193 copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2024-05-06T23:22:59,193 creating build/lib/galaxy/tools/bundled/extract 2024-05-06T23:22:59,194 copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2024-05-06T23:22:59,194 copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2024-05-06T23:22:59,195 copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2024-05-06T23:22:59,195 copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2024-05-06T23:22:59,196 copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2024-05-06T23:22:59,196 creating build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,197 copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,197 copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,198 copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,198 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,199 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,200 copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,200 copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,201 copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,201 copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,201 copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,202 copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,202 copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,203 copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,203 copying galaxy/tools/bundled/filters/catWrapper.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,204 copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,204 copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,204 copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,205 copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,205 copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,206 copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,206 copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,207 copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,207 copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,208 copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,208 copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,209 copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,209 copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,210 copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,210 copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,211 copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,211 copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,212 copying galaxy/tools/bundled/filters/grep.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,212 copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,212 copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,213 copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,213 copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,214 copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,215 copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,216 copying galaxy/tools/bundled/filters/joinWrapper.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,216 copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,217 copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,217 copying galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,218 copying galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,218 copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,218 copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,219 copying galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,219 copying galaxy/tools/bundled/filters/pasteWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,220 copying galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,220 copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,221 copying galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,221 copying galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,222 copying galaxy/tools/bundled/filters/remove_beginning.pl -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,222 copying galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,223 copying galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,223 copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,223 copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,224 copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,224 copying galaxy/tools/bundled/filters/sorter.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,225 copying galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,226 copying galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,226 copying galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,229 copying galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,231 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,233 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,236 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,238 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,240 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,243 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,245 copying galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,248 copying galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,250 copying galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,252 copying galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,255 copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,257 copying galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2024-05-06T23:22:59,259 creating build/lib/galaxy/tools/bundled/filters/gff 2024-05-06T23:22:59,260 copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-05-06T23:22:59,261 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-05-06T23:22:59,263 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-05-06T23:22:59,266 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-05-06T23:22:59,268 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-05-06T23:22:59,270 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-05-06T23:22:59,273 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-05-06T23:22:59,275 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2024-05-06T23:22:59,277 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2024-05-06T23:22:59,279 creating build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,280 copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,282 copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,284 copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,287 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,289 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,291 copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,294 copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,296 copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,298 copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,300 copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,302 copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,305 copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,307 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,309 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,312 copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,314 copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,317 copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,319 copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,322 copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,324 copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,326 copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,328 copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,330 copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,332 copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,334 copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,337 copying galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,340 copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,342 copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,344 copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,347 copying galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,349 copying galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,351 copying galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,353 copying galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,355 copying galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2024-05-06T23:22:59,358 creating build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,359 copying galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,360 copying galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,363 copying galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,365 copying galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,368 copying galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,370 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,373 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,376 copying galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,377 copying galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,380 copying galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,382 copying galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,384 copying galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,387 copying galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,389 copying galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,391 copying galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,393 copying galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,394 copying galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,397 copying galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,399 copying galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,401 copying galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,404 copying galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,407 copying galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,409 copying galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,411 copying galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,413 copying galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,415 copying galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,418 copying galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,420 copying galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,423 copying galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,425 copying galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,427 copying galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,429 copying galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,432 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,434 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2024-05-06T23:22:59,437 creating build/lib/galaxy/tools/bundled/meme 2024-05-06T23:22:59,438 copying galaxy/tools/bundled/meme/__init__.py -> build/lib/galaxy/tools/bundled/meme 2024-05-06T23:22:59,440 copying galaxy/tools/bundled/meme/fimo.xml -> build/lib/galaxy/tools/bundled/meme 2024-05-06T23:22:59,442 copying galaxy/tools/bundled/meme/fimo_wrapper.py -> build/lib/galaxy/tools/bundled/meme 2024-05-06T23:22:59,444 copying galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2024-05-06T23:22:59,447 creating build/lib/galaxy/tools/bundled/metag_tools 2024-05-06T23:22:59,448 copying galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-05-06T23:22:59,450 copying galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-05-06T23:22:59,452 copying galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-05-06T23:22:59,454 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-05-06T23:22:59,457 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-05-06T23:22:59,460 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2024-05-06T23:22:59,462 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2024-05-06T23:22:59,465 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:22:59,466 copying galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:22:59,469 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:22:59,470 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:22:59,473 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:22:59,475 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:22:59,477 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:22:59,479 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:22:59,482 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:22:59,484 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:22:59,486 creating build/lib/galaxy/tools/bundled/ngs_simulation 2024-05-06T23:22:59,487 copying galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-05-06T23:22:59,489 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-05-06T23:22:59,491 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2024-05-06T23:22:59,494 creating build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,495 copying galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,497 copying galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,498 copying galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,500 copying galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,503 copying galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,505 copying galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,507 copying galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,509 copying galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,511 copying galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,514 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,516 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,518 copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,521 copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,523 copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,525 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,528 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,530 copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,532 copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,534 copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,537 copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,539 copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,541 copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,543 copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,545 copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,548 copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2024-05-06T23:22:59,550 creating build/lib/galaxy/tools/bundled/plotting 2024-05-06T23:22:59,551 copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2024-05-06T23:22:59,553 copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2024-05-06T23:22:59,555 copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2024-05-06T23:22:59,558 creating build/lib/galaxy/tools/bundled/solid_tools 2024-05-06T23:22:59,559 copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-05-06T23:22:59,560 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-05-06T23:22:59,563 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-05-06T23:22:59,566 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-05-06T23:22:59,568 copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2024-05-06T23:22:59,570 copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-05-06T23:22:59,572 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2024-05-06T23:22:59,575 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2024-05-06T23:22:59,578 creating build/lib/galaxy/tools/bundled/sr_assembly 2024-05-06T23:22:59,579 copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-05-06T23:22:59,581 copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2024-05-06T23:22:59,585 copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-05-06T23:22:59,587 copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2024-05-06T23:22:59,590 copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2024-05-06T23:22:59,592 creating build/lib/galaxy/tools/bundled/sr_mapping 2024-05-06T23:22:59,594 copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-05-06T23:22:59,597 copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-05-06T23:22:59,599 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-05-06T23:22:59,603 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-05-06T23:22:59,606 copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-05-06T23:22:59,609 copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-05-06T23:22:59,612 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2024-05-06T23:22:59,614 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2024-05-06T23:22:59,617 creating build/lib/galaxy/tools/bundled/stats 2024-05-06T23:22:59,618 copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2024-05-06T23:22:59,621 copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2024-05-06T23:22:59,624 copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2024-05-06T23:22:59,627 copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2024-05-06T23:22:59,630 copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2024-05-06T23:22:59,633 copying galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/lib/galaxy/tools/bundled/stats 2024-05-06T23:22:59,636 copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2024-05-06T23:22:59,639 copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2024-05-06T23:22:59,642 copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2024-05-06T23:22:59,645 copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2024-05-06T23:22:59,648 copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2024-05-06T23:22:59,650 copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-05-06T23:22:59,653 copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-05-06T23:22:59,656 copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2024-05-06T23:22:59,658 copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2024-05-06T23:22:59,661 copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2024-05-06T23:22:59,663 copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2024-05-06T23:22:59,666 copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2024-05-06T23:22:59,669 copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2024-05-06T23:22:59,722 installing to build/bdist.linux-armv7l/wheel 2024-05-06T23:22:59,723 running install 2024-05-06T23:22:59,760 running install_lib 2024-05-06T23:22:59,768 creating build/bdist.linux-armv7l 2024-05-06T23:22:59,769 creating build/bdist.linux-armv7l/wheel 2024-05-06T23:22:59,770 creating build/bdist.linux-armv7l/wheel/tool_shed_client 2024-05-06T23:22:59,772 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-05-06T23:22:59,774 creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-05-06T23:22:59,775 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-05-06T23:22:59,778 copying build/lib/tool_shed_client/schema/trs_service_info.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-05-06T23:22:59,780 copying build/lib/tool_shed_client/schema/trs.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2024-05-06T23:22:59,782 copying build/lib/tool_shed_client/trs_util.py -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-05-06T23:22:59,784 copying build/lib/tool_shed_client/py.typed -> build/bdist.linux-armv7l/wheel/tool_shed_client 2024-05-06T23:22:59,785 creating build/bdist.linux-armv7l/wheel/galaxy_ext 2024-05-06T23:22:59,786 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext 2024-05-06T23:22:59,789 creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-05-06T23:22:59,790 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-05-06T23:22:59,791 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2024-05-06T23:22:59,793 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/galaxy_ext 2024-05-06T23:22:59,795 creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-05-06T23:22:59,796 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-05-06T23:22:59,797 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2024-05-06T23:22:59,800 creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-05-06T23:22:59,801 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-05-06T23:22:59,802 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2024-05-06T23:22:59,805 creating build/bdist.linux-armv7l/wheel/galaxy 2024-05-06T23:22:59,806 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-05-06T23:22:59,808 creating build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-05-06T23:22:59,809 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-05-06T23:22:59,814 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,815 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,818 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-05-06T23:22:59,819 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-05-06T23:22:59,821 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-05-06T23:22:59,823 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-05-06T23:22:59,825 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-05-06T23:22:59,826 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-05-06T23:22:59,828 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-05-06T23:22:59,829 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-05-06T23:22:59,832 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-05-06T23:22:59,834 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2024-05-06T23:22:59,836 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:59,837 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:59,839 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:59,841 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:59,844 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:59,846 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:59,847 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2024-05-06T23:22:59,849 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2024-05-06T23:22:59,851 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-05-06T23:22:59,853 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-05-06T23:22:59,854 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-05-06T23:22:59,856 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2024-05-06T23:22:59,857 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2024-05-06T23:22:59,859 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-05-06T23:22:59,861 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2024-05-06T23:22:59,864 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-05-06T23:22:59,865 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-05-06T23:22:59,867 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-05-06T23:22:59,869 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-05-06T23:22:59,871 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2024-05-06T23:22:59,873 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,875 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,878 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-05-06T23:22:59,879 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-05-06T23:22:59,881 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-05-06T23:22:59,883 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2024-05-06T23:22:59,886 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,888 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,890 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,893 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,895 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,898 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,900 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,904 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,907 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,910 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,913 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,915 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2024-05-06T23:22:59,917 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-05-06T23:22:59,921 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-05-06T23:22:59,924 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-05-06T23:22:59,926 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-05-06T23:22:59,929 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2024-05-06T23:22:59,930 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2024-05-06T23:22:59,932 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-05-06T23:22:59,933 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-05-06T23:22:59,935 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-05-06T23:22:59,937 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2024-05-06T23:22:59,938 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-05-06T23:22:59,942 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-05-06T23:22:59,944 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2024-05-06T23:22:59,947 creating build/bdist.linux-armv7l/wheel/galaxy/forms 2024-05-06T23:22:59,948 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/forms 2024-05-06T23:22:59,949 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/forms 2024-05-06T23:22:59,952 copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-05-06T23:22:59,954 creating build/bdist.linux-armv7l/wheel/galaxy/actions 2024-05-06T23:22:59,955 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/actions 2024-05-06T23:22:59,956 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/galaxy/actions 2024-05-06T23:22:59,959 creating build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-05-06T23:22:59,960 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-05-06T23:22:59,962 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-05-06T23:22:59,965 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-05-06T23:22:59,967 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-05-06T23:22:59,969 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-05-06T23:22:59,971 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-05-06T23:22:59,974 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-05-06T23:22:59,976 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-05-06T23:22:59,977 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2024-05-06T23:22:59,979 copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-05-06T23:22:59,982 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy 2024-05-06T23:22:59,984 copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-05-06T23:22:59,987 creating build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:22:59,988 copying build/lib/galaxy/managers/cloud.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:22:59,990 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:22:59,995 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:22:59,998 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,001 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,004 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,007 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,009 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,011 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,013 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,015 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,017 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,019 copying build/lib/galaxy/managers/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,021 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,023 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,025 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,028 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,033 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,035 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,037 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,040 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,042 copying build/lib/galaxy/managers/cloudauthzs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,044 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,047 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,050 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,052 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,054 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,056 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,058 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,060 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,062 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,064 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,067 copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,069 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,072 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,075 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,077 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,079 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,081 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,083 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,085 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,088 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,090 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,093 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,095 copying build/lib/galaxy/managers/item_tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,097 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,099 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,101 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,104 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,105 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,109 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,112 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,115 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,117 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,119 copying build/lib/galaxy/managers/dbkeys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,122 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,125 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,128 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,130 copying build/lib/galaxy/managers/metrics.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,133 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2024-05-06T23:23:00,136 creating build/bdist.linux-armv7l/wheel/galaxy/short_term_storage 2024-05-06T23:23:00,137 copying build/lib/galaxy/short_term_storage/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/short_term_storage 2024-05-06T23:23:00,140 creating build/bdist.linux-armv7l/wheel/galaxy/work 2024-05-06T23:23:00,141 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/work 2024-05-06T23:23:00,144 copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/galaxy/work 2024-05-06T23:23:00,146 copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-05-06T23:23:00,149 creating build/bdist.linux-armv7l/wheel/galaxy/celery 2024-05-06T23:23:00,150 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-05-06T23:23:00,153 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-05-06T23:23:00,155 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-05-06T23:23:00,158 copying build/lib/galaxy/celery/base_task.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2024-05-06T23:23:00,160 creating build/bdist.linux-armv7l/wheel/galaxy/webhooks 2024-05-06T23:23:00,162 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/webhooks 2024-05-06T23:23:00,164 copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-05-06T23:23:00,167 creating build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-05-06T23:23:00,168 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-05-06T23:23:00,171 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2024-05-06T23:23:00,172 copying build/lib/galaxy/visualization/tracks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2024-05-06T23:23:00,174 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization 2024-05-06T23:23:00,177 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2024-05-06T23:23:00,178 copying build/lib/galaxy/visualization/genome/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2024-05-06T23:23:00,181 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-05-06T23:23:00,181 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-05-06T23:23:00,183 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-05-06T23:23:00,186 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-05-06T23:23:00,188 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-05-06T23:23:00,191 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-05-06T23:23:00,193 copying build/lib/galaxy/visualization/plugins/utils.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2024-05-06T23:23:00,196 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-05-06T23:23:00,197 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-05-06T23:23:00,199 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-05-06T23:23:00,201 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-05-06T23:23:00,204 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-05-06T23:23:00,208 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-05-06T23:23:00,209 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-05-06T23:23:00,212 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-05-06T23:23:00,214 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-05-06T23:23:00,216 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-05-06T23:23:00,219 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2024-05-06T23:23:00,222 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2024-05-06T23:23:00,225 creating build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-05-06T23:23:00,227 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-05-06T23:23:00,229 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-05-06T23:23:00,232 copying build/lib/galaxy/authnz/custos_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-05-06T23:23:00,235 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-05-06T23:23:00,238 copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2024-05-06T23:23:00,240 copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-05-06T23:23:00,242 copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-05-06T23:23:00,245 creating build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-05-06T23:23:00,246 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-05-06T23:23:00,248 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-05-06T23:23:00,251 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-05-06T23:23:00,256 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-05-06T23:23:00,259 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-05-06T23:23:00,260 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-05-06T23:23:00,263 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2024-05-06T23:23:00,265 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-05-06T23:23:00,267 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-05-06T23:23:00,270 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-05-06T23:23:00,273 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-05-06T23:23:00,274 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-05-06T23:23:00,276 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-05-06T23:23:00,279 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2024-05-06T23:23:00,282 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2024-05-06T23:23:00,284 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2024-05-06T23:23:00,288 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-05-06T23:23:00,289 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-05-06T23:23:00,292 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2024-05-06T23:23:00,295 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-05-06T23:23:00,296 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-05-06T23:23:00,299 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2024-05-06T23:23:00,301 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-05-06T23:23:00,304 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2024-05-06T23:23:00,307 copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-05-06T23:23:00,310 creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-05-06T23:23:00,311 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-05-06T23:23:00,313 copying build/lib/galaxy/app_unittest_utils/toolbox_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-05-06T23:23:00,315 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-05-06T23:23:00,317 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2024-05-06T23:23:00,321 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-05-06T23:23:00,323 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-05-06T23:23:00,324 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-05-06T23:23:00,326 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-05-06T23:23:00,328 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-05-06T23:23:00,331 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-05-06T23:23:00,333 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-05-06T23:23:00,336 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-05-06T23:23:00,339 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-05-06T23:23:00,341 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-05-06T23:23:00,345 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-05-06T23:23:00,349 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-05-06T23:23:00,352 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2024-05-06T23:23:00,354 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-05-06T23:23:00,357 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-05-06T23:23:00,358 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-05-06T23:23:00,360 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-05-06T23:23:00,363 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-05-06T23:23:00,366 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-05-06T23:23:00,367 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-05-06T23:23:00,369 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2024-05-06T23:23:00,372 copying build/lib/galaxy/tool_shed/galaxy_install/client.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-05-06T23:23:00,374 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2024-05-06T23:23:00,378 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-05-06T23:23:00,379 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-05-06T23:23:00,381 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2024-05-06T23:23:00,384 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-05-06T23:23:00,385 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-05-06T23:23:00,388 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-05-06T23:23:00,390 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2024-05-06T23:23:00,393 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-05-06T23:23:00,395 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-05-06T23:23:00,397 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-05-06T23:23:00,398 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2024-05-06T23:23:00,402 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2024-05-06T23:23:00,405 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2024-05-06T23:23:00,406 copying build/lib/galaxy/tool_shed/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2024-05-06T23:23:00,409 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-05-06T23:23:00,410 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-05-06T23:23:00,412 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-05-06T23:23:00,415 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2024-05-06T23:23:00,419 creating build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2024-05-06T23:23:00,421 copying build/lib/galaxy/carbon_emissions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2024-05-06T23:23:00,423 creating build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:00,425 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:00,428 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-05-06T23:23:00,429 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-05-06T23:23:00,431 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2024-05-06T23:23:00,433 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2024-05-06T23:23:00,435 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util 2024-05-06T23:23:00,438 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:00,443 copying build/lib/galaxy/tools/harmonize_two_collections_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:00,446 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:00,448 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:00,450 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:00,453 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:00,455 creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-05-06T23:23:00,456 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-05-06T23:23:00,459 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-05-06T23:23:00,461 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-05-06T23:23:00,463 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-05-06T23:23:00,465 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2024-05-06T23:23:00,467 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:00,470 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data 2024-05-06T23:23:00,471 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data 2024-05-06T23:23:00,474 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:00,478 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2024-05-06T23:23:00,479 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2024-05-06T23:23:00,482 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-05-06T23:23:00,484 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-05-06T23:23:00,486 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-05-06T23:23:00,489 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2024-05-06T23:23:00,493 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-05-06T23:23:00,495 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-05-06T23:23:00,498 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-05-06T23:23:00,501 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2024-05-06T23:23:00,506 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,507 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,509 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,512 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,514 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,517 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,520 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,522 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,524 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,527 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,530 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,532 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,535 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,537 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,540 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,543 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,546 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,548 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,550 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,553 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,555 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,558 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,560 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,562 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,565 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,568 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2024-05-06T23:23:00,571 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-05-06T23:23:00,573 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-05-06T23:23:00,574 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-05-06T23:23:00,576 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-05-06T23:23:00,578 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-05-06T23:23:00,580 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-05-06T23:23:00,582 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-05-06T23:23:00,584 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2024-05-06T23:23:00,588 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-05-06T23:23:00,589 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-05-06T23:23:00,592 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-05-06T23:23:00,593 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-05-06T23:23:00,595 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-05-06T23:23:00,598 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-05-06T23:23:00,600 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-05-06T23:23:00,602 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-05-06T23:23:00,604 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2024-05-06T23:23:00,607 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-05-06T23:23:00,608 copying build/lib/galaxy/tools/bundled/data_export/send.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-05-06T23:23:00,610 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-05-06T23:23:00,612 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-05-06T23:23:00,614 copying build/lib/galaxy/tools/bundled/data_export/send.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2024-05-06T23:23:00,617 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-05-06T23:23:00,618 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-05-06T23:23:00,620 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-05-06T23:23:00,622 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-05-06T23:23:00,624 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-05-06T23:23:00,627 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-05-06T23:23:00,629 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-05-06T23:23:00,632 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-05-06T23:23:00,634 copying build/lib/galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-05-06T23:23:00,636 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-05-06T23:23:00,638 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-05-06T23:23:00,640 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2024-05-06T23:23:00,643 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:23:00,644 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:23:00,646 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:23:00,648 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:23:00,650 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:23:00,652 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:23:00,654 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:23:00,657 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:23:00,659 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:23:00,661 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2024-05-06T23:23:00,664 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-05-06T23:23:00,665 copying build/lib/galaxy/tools/bundled/meme/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-05-06T23:23:00,666 copying build/lib/galaxy/tools/bundled/meme/fimo_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-05-06T23:23:00,669 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-05-06T23:23:00,672 copying build/lib/galaxy/tools/bundled/meme/fimo.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2024-05-06T23:23:00,675 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-05-06T23:23:00,676 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-05-06T23:23:00,679 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-05-06T23:23:00,681 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-05-06T23:23:00,683 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-05-06T23:23:00,686 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-05-06T23:23:00,689 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-05-06T23:23:00,692 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-05-06T23:23:00,695 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2024-05-06T23:23:00,699 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-05-06T23:23:00,700 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-05-06T23:23:00,702 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-05-06T23:23:00,704 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-05-06T23:23:00,707 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-05-06T23:23:00,710 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2024-05-06T23:23:00,713 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,714 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,717 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,720 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,722 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,724 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,726 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,729 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,731 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,733 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,736 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,738 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,740 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,743 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,745 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,748 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,750 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,753 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,755 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,757 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,760 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,761 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,763 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,771 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,773 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,775 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,777 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,779 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,781 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,783 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,785 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,787 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,789 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,791 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,793 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,795 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,797 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,798 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,800 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2024-05-06T23:23:00,802 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-05-06T23:23:00,803 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-05-06T23:23:00,806 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-05-06T23:23:00,808 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2024-05-06T23:23:00,811 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,812 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,814 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,816 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,817 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,819 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,821 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,823 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,825 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,827 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,829 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,831 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,834 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,836 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,838 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,840 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,843 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,845 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,847 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,849 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,851 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,853 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,855 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,857 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,860 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,862 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,864 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,866 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,868 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,870 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,872 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,874 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,877 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,880 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,882 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2024-05-06T23:23:00,885 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,886 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,889 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,890 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,892 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,894 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,896 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,898 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,900 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,902 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,904 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,906 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,908 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,910 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,912 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,914 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,916 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,918 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,920 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,922 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,924 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,926 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,928 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,930 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,933 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,934 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,936 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,938 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,941 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,943 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,945 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,947 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,949 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,951 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,953 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2024-05-06T23:23:00,957 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-05-06T23:23:00,958 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-05-06T23:23:00,960 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-05-06T23:23:00,962 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-05-06T23:23:00,965 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-05-06T23:23:00,966 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2024-05-06T23:23:00,970 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,971 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,973 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,974 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,976 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,978 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,979 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,981 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,983 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,986 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,988 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,990 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,991 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,993 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,995 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:00,997 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,000 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-05-06T23:23:01,001 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-05-06T23:23:01,002 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-05-06T23:23:01,004 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-05-06T23:23:01,006 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-05-06T23:23:01,008 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-05-06T23:23:01,010 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-05-06T23:23:01,012 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-05-06T23:23:01,014 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-05-06T23:23:01,017 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2024-05-06T23:23:01,019 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,021 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,023 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,025 copying build/lib/galaxy/tools/bundled/filters/catWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,027 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,028 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,030 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,032 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,034 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,036 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,038 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,040 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,042 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,044 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,046 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,048 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,050 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,052 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,055 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,057 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,060 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,062 copying build/lib/galaxy/tools/bundled/filters/joinWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,064 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,066 copying build/lib/galaxy/tools/bundled/filters/sorter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,069 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,071 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,073 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,076 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,078 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,080 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,083 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,085 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,087 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,089 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,091 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,093 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,095 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,097 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,098 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,101 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,102 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,105 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,106 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,109 copying build/lib/galaxy/tools/bundled/filters/grep.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,111 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,112 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,114 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,117 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,118 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,121 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,123 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,125 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,127 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,129 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,132 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,134 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,136 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,138 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,140 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2024-05-06T23:23:01,142 creating build/bdist.linux-armv7l/wheel/galaxy/tools/search 2024-05-06T23:23:01,143 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/search 2024-05-06T23:23:01,146 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-05-06T23:23:01,147 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-05-06T23:23:01,149 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2024-05-06T23:23:01,151 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,153 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,156 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,158 copying build/lib/galaxy/tools/test.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,161 creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-05-06T23:23:01,162 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-05-06T23:23:01,165 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-05-06T23:23:01,167 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-05-06T23:23:01,169 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-05-06T23:23:01,171 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-05-06T23:23:01,173 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-05-06T23:23:01,175 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-05-06T23:23:01,177 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2024-05-06T23:23:01,180 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,182 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,185 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,187 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,189 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,191 copying build/lib/galaxy/tools/keep_success_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,193 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,195 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,197 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,199 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,202 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,204 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,207 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,209 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,212 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2024-05-06T23:23:01,213 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2024-05-06T23:23:01,215 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-05-06T23:23:01,216 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-05-06T23:23:01,218 copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-05-06T23:23:01,220 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-05-06T23:23:01,222 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-05-06T23:23:01,224 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-05-06T23:23:01,226 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-05-06T23:23:01,228 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-05-06T23:23:01,230 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-05-06T23:23:01,232 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2024-05-06T23:23:01,235 creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2024-05-06T23:23:01,236 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2024-05-06T23:23:01,238 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,241 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,242 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,245 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,247 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,249 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,252 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,256 copying build/lib/galaxy/tools/parameters/history_query.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,258 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,260 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,262 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,265 copying build/lib/galaxy/tools/parameters/cancelable_request.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,267 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,269 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,271 copying build/lib/galaxy/tools/parameters/workflow_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,273 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2024-05-06T23:23:01,277 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,279 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,283 creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-05-06T23:23:01,284 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-05-06T23:23:01,286 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-05-06T23:23:01,289 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-05-06T23:23:01,291 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-05-06T23:23:01,293 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-05-06T23:23:01,296 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2024-05-06T23:23:01,299 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,301 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2024-05-06T23:23:01,303 running install_egg_info 2024-05-06T23:23:01,320 Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/galaxy_app-24.0.1-py3.11.egg-info 2024-05-06T23:23:01,367 running install_scripts 2024-05-06T23:23:01,415 creating build/bdist.linux-armv7l/wheel/galaxy_app-24.0.1.dist-info/WHEEL 2024-05-06T23:23:01,419 creating '/tmp/pip-wheel-xrtm6bkd/.tmp-l0i2wjj8/galaxy_app-24.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-06T23:23:01,422 adding 'galaxy/__init__.py' 2024-05-06T23:23:01,429 adding 'galaxy/app.py' 2024-05-06T23:23:01,431 adding 'galaxy/config_watchers.py' 2024-05-06T23:23:01,433 adding 'galaxy/di.py' 2024-05-06T23:23:01,435 adding 'galaxy/main.py' 2024-05-06T23:23:01,437 adding 'galaxy/main_config.py' 2024-05-06T23:23:01,439 adding 'galaxy/py.typed' 2024-05-06T23:23:01,442 adding 'galaxy/queue_worker.py' 2024-05-06T23:23:01,444 adding 'galaxy/queues.py' 2024-05-06T23:23:01,446 adding 'galaxy/structured_app.py' 2024-05-06T23:23:01,448 adding 'galaxy/actions/__init__.py' 2024-05-06T23:23:01,452 adding 'galaxy/actions/library.py' 2024-05-06T23:23:01,454 adding 'galaxy/app_unittest_utils/__init__.py' 2024-05-06T23:23:01,457 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2024-05-06T23:23:01,459 adding 'galaxy/app_unittest_utils/toolbox_support.py' 2024-05-06T23:23:01,461 adding 'galaxy/app_unittest_utils/tools_support.py' 2024-05-06T23:23:01,464 adding 'galaxy/authnz/__init__.py' 2024-05-06T23:23:01,469 adding 'galaxy/authnz/custos_authnz.py' 2024-05-06T23:23:01,473 adding 'galaxy/authnz/managers.py' 2024-05-06T23:23:01,478 adding 'galaxy/authnz/psa_authnz.py' 2024-05-06T23:23:01,480 adding 'galaxy/authnz/util.py' 2024-05-06T23:23:01,482 adding 'galaxy/carbon_emissions/__init__.py' 2024-05-06T23:23:01,485 adding 'galaxy/celery/__init__.py' 2024-05-06T23:23:01,487 adding 'galaxy/celery/_serialization.py' 2024-05-06T23:23:01,488 adding 'galaxy/celery/base_task.py' 2024-05-06T23:23:01,491 adding 'galaxy/celery/tasks.py' 2024-05-06T23:23:01,493 adding 'galaxy/dependencies/__init__.py' 2024-05-06T23:23:01,495 adding 'galaxy/dependencies/conditional-requirements.txt' 2024-05-06T23:23:01,496 adding 'galaxy/dependencies/dev-requirements.txt' 2024-05-06T23:23:01,497 adding 'galaxy/dependencies/lint-requirements.txt' 2024-05-06T23:23:01,498 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2024-05-06T23:23:01,500 adding 'galaxy/dependencies/pinned-requirements.txt' 2024-05-06T23:23:01,501 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2024-05-06T23:23:01,502 adding 'galaxy/dependencies/update.sh' 2024-05-06T23:23:01,504 adding 'galaxy/dependencies/update_lint_requirements.sh' 2024-05-06T23:23:01,505 adding 'galaxy/forms/__init__.py' 2024-05-06T23:23:01,507 adding 'galaxy/forms/forms.py' 2024-05-06T23:23:01,522 adding 'galaxy/jobs/__init__.py' 2024-05-06T23:23:01,526 adding 'galaxy/jobs/command_factory.py' 2024-05-06T23:23:01,533 adding 'galaxy/jobs/dynamic_tool_destination.py' 2024-05-06T23:23:01,540 adding 'galaxy/jobs/handler.py' 2024-05-06T23:23:01,542 adding 'galaxy/jobs/manager.py' 2024-05-06T23:23:01,544 adding 'galaxy/jobs/mapper.py' 2024-05-06T23:23:01,546 adding 'galaxy/jobs/rule_helper.py' 2024-05-06T23:23:01,547 adding 'galaxy/jobs/stock_rules.py' 2024-05-06T23:23:01,548 adding 'galaxy/jobs/rules/__init__.py' 2024-05-06T23:23:01,554 adding 'galaxy/jobs/runners/__init__.py' 2024-05-06T23:23:01,557 adding 'galaxy/jobs/runners/aws.py' 2024-05-06T23:23:01,559 adding 'galaxy/jobs/runners/chronos.py' 2024-05-06T23:23:01,561 adding 'galaxy/jobs/runners/cli.py' 2024-05-06T23:23:01,563 adding 'galaxy/jobs/runners/condor.py' 2024-05-06T23:23:01,566 adding 'galaxy/jobs/runners/drmaa.py' 2024-05-06T23:23:01,569 adding 'galaxy/jobs/runners/godocker.py' 2024-05-06T23:23:01,575 adding 'galaxy/jobs/runners/kubernetes.py' 2024-05-06T23:23:01,577 adding 'galaxy/jobs/runners/local.py' 2024-05-06T23:23:01,580 adding 'galaxy/jobs/runners/pbs.py' 2024-05-06T23:23:01,586 adding 'galaxy/jobs/runners/pulsar.py' 2024-05-06T23:23:01,589 adding 'galaxy/jobs/runners/slurm.py' 2024-05-06T23:23:01,590 adding 'galaxy/jobs/runners/state_handler_factory.py' 2024-05-06T23:23:01,592 adding 'galaxy/jobs/runners/tasks.py' 2024-05-06T23:23:01,596 adding 'galaxy/jobs/runners/univa.py' 2024-05-06T23:23:01,598 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2024-05-06T23:23:01,599 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2024-05-06T23:23:01,601 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2024-05-06T23:23:01,602 adding 'galaxy/jobs/runners/util/__init__.py' 2024-05-06T23:23:01,604 adding 'galaxy/jobs/runners/util/env.py' 2024-05-06T23:23:01,605 adding 'galaxy/jobs/runners/util/external.py' 2024-05-06T23:23:01,606 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2024-05-06T23:23:01,608 adding 'galaxy/jobs/runners/util/kill.py' 2024-05-06T23:23:01,609 adding 'galaxy/jobs/runners/util/process_groups.py' 2024-05-06T23:23:01,611 adding 'galaxy/jobs/runners/util/pykube_util.py' 2024-05-06T23:23:01,612 adding 'galaxy/jobs/runners/util/sudo.py' 2024-05-06T23:23:01,614 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2024-05-06T23:23:01,615 adding 'galaxy/jobs/runners/util/cli/factory.py' 2024-05-06T23:23:01,617 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2024-05-06T23:23:01,618 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2024-05-06T23:23:01,620 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2024-05-06T23:23:01,621 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2024-05-06T23:23:01,623 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2024-05-06T23:23:01,624 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2024-05-06T23:23:01,626 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2024-05-06T23:23:01,627 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2024-05-06T23:23:01,629 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2024-05-06T23:23:01,631 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2024-05-06T23:23:01,633 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2024-05-06T23:23:01,634 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2024-05-06T23:23:01,635 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2024-05-06T23:23:01,636 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2024-05-06T23:23:01,638 adding 'galaxy/jobs/splitters/__init__.py' 2024-05-06T23:23:01,639 adding 'galaxy/jobs/splitters/basic.py' 2024-05-06T23:23:01,641 adding 'galaxy/jobs/splitters/multi.py' 2024-05-06T23:23:01,643 adding 'galaxy/managers/__init__.py' 2024-05-06T23:23:01,645 adding 'galaxy/managers/annotatable.py' 2024-05-06T23:23:01,646 adding 'galaxy/managers/api_keys.py' 2024-05-06T23:23:01,653 adding 'galaxy/managers/base.py' 2024-05-06T23:23:01,655 adding 'galaxy/managers/citations.py' 2024-05-06T23:23:01,657 adding 'galaxy/managers/cloud.py' 2024-05-06T23:23:01,659 adding 'galaxy/managers/cloudauthzs.py' 2024-05-06T23:23:01,663 adding 'galaxy/managers/collections.py' 2024-05-06T23:23:01,665 adding 'galaxy/managers/collections_util.py' 2024-05-06T23:23:01,667 adding 'galaxy/managers/configuration.py' 2024-05-06T23:23:01,669 adding 'galaxy/managers/context.py' 2024-05-06T23:23:01,674 adding 'galaxy/managers/datasets.py' 2024-05-06T23:23:01,676 adding 'galaxy/managers/datatypes.py' 2024-05-06T23:23:01,677 adding 'galaxy/managers/dbkeys.py' 2024-05-06T23:23:01,679 adding 'galaxy/managers/deletable.py' 2024-05-06T23:23:01,680 adding 'galaxy/managers/display_applications.py' 2024-05-06T23:23:01,681 adding 'galaxy/managers/executables.py' 2024-05-06T23:23:01,683 adding 'galaxy/managers/export_tracker.py' 2024-05-06T23:23:01,685 adding 'galaxy/managers/folders.py' 2024-05-06T23:23:01,687 adding 'galaxy/managers/forms.py' 2024-05-06T23:23:01,688 adding 'galaxy/managers/genomes.py' 2024-05-06T23:23:01,690 adding 'galaxy/managers/group_roles.py' 2024-05-06T23:23:01,691 adding 'galaxy/managers/group_users.py' 2024-05-06T23:23:01,692 adding 'galaxy/managers/groups.py' 2024-05-06T23:23:01,696 adding 'galaxy/managers/hdas.py' 2024-05-06T23:23:01,698 adding 'galaxy/managers/hdcas.py' 2024-05-06T23:23:01,703 adding 'galaxy/managers/histories.py' 2024-05-06T23:23:01,706 adding 'galaxy/managers/history_contents.py' 2024-05-06T23:23:01,709 adding 'galaxy/managers/interactivetool.py' 2024-05-06T23:23:01,711 adding 'galaxy/managers/item_tags.py' 2024-05-06T23:23:01,712 adding 'galaxy/managers/job_connections.py' 2024-05-06T23:23:01,718 adding 'galaxy/managers/jobs.py' 2024-05-06T23:23:01,719 adding 'galaxy/managers/lddas.py' 2024-05-06T23:23:01,721 adding 'galaxy/managers/libraries.py' 2024-05-06T23:23:01,723 adding 'galaxy/managers/library_datasets.py' 2024-05-06T23:23:01,734 adding 'galaxy/managers/licenses.json' 2024-05-06T23:23:01,737 adding 'galaxy/managers/licenses.py' 2024-05-06T23:23:01,738 adding 'galaxy/managers/markdown_export_base.css' 2024-05-06T23:23:01,740 adding 'galaxy/managers/markdown_parse.py' 2024-05-06T23:23:01,744 adding 'galaxy/managers/markdown_util.py' 2024-05-06T23:23:01,746 adding 'galaxy/managers/metrics.py' 2024-05-06T23:23:01,749 adding 'galaxy/managers/model_stores.py' 2024-05-06T23:23:01,751 adding 'galaxy/managers/notification.py' 2024-05-06T23:23:01,754 adding 'galaxy/managers/pages.py' 2024-05-06T23:23:01,756 adding 'galaxy/managers/quotas.py' 2024-05-06T23:23:01,758 adding 'galaxy/managers/ratable.py' 2024-05-06T23:23:01,760 adding 'galaxy/managers/rbac_secured.py' 2024-05-06T23:23:01,762 adding 'galaxy/managers/remote_files.py' 2024-05-06T23:23:01,763 adding 'galaxy/managers/roles.py' 2024-05-06T23:23:01,765 adding 'galaxy/managers/secured.py' 2024-05-06T23:23:01,766 adding 'galaxy/managers/session.py' 2024-05-06T23:23:01,770 adding 'galaxy/managers/sharable.py' 2024-05-06T23:23:01,771 adding 'galaxy/managers/taggable.py' 2024-05-06T23:23:01,772 adding 'galaxy/managers/tags.py' 2024-05-06T23:23:01,774 adding 'galaxy/managers/tasks.py' 2024-05-06T23:23:01,775 adding 'galaxy/managers/tool_data.py' 2024-05-06T23:23:01,777 adding 'galaxy/managers/tools.py' 2024-05-06T23:23:01,781 adding 'galaxy/managers/users.py' 2024-05-06T23:23:01,783 adding 'galaxy/managers/visualizations.py' 2024-05-06T23:23:01,795 adding 'galaxy/managers/workflows.py' 2024-05-06T23:23:01,798 adding 'galaxy/short_term_storage/__init__.py' 2024-05-06T23:23:01,800 adding 'galaxy/tool_shed/__init__.py' 2024-05-06T23:23:01,801 adding 'galaxy/tool_shed/cache.py' 2024-05-06T23:23:01,802 adding 'galaxy/tool_shed/repository_type.py' 2024-05-06T23:23:01,804 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2024-05-06T23:23:01,805 adding 'galaxy/tool_shed/galaxy_install/client.py' 2024-05-06T23:23:01,810 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2024-05-06T23:23:01,816 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2024-05-06T23:23:01,817 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2024-05-06T23:23:01,819 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2024-05-06T23:23:01,821 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2024-05-06T23:23:01,823 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2024-05-06T23:23:01,827 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2024-05-06T23:23:01,829 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2024-05-06T23:23:01,830 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2024-05-06T23:23:01,834 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2024-05-06T23:23:01,836 adding 'galaxy/tool_shed/metadata/__init__.py' 2024-05-06T23:23:01,841 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2024-05-06T23:23:01,843 adding 'galaxy/tool_shed/tools/__init__.py' 2024-05-06T23:23:01,845 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2024-05-06T23:23:01,847 adding 'galaxy/tool_shed/tools/tool_validator.py' 2024-05-06T23:23:01,849 adding 'galaxy/tool_shed/unittest_utils/__init__.py' 2024-05-06T23:23:01,851 adding 'galaxy/tool_shed/util/__init__.py' 2024-05-06T23:23:01,852 adding 'galaxy/tool_shed/util/basic_util.py' 2024-05-06T23:23:01,854 adding 'galaxy/tool_shed/util/container_util.py' 2024-05-06T23:23:01,856 adding 'galaxy/tool_shed/util/dependency_display.py' 2024-05-06T23:23:01,858 adding 'galaxy/tool_shed/util/hg_util.py' 2024-05-06T23:23:01,859 adding 'galaxy/tool_shed/util/metadata_util.py' 2024-05-06T23:23:01,863 adding 'galaxy/tool_shed/util/repository_util.py' 2024-05-06T23:23:01,865 adding 'galaxy/tool_shed/util/shed_util_common.py' 2024-05-06T23:23:01,867 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2024-05-06T23:23:01,869 adding 'galaxy/tool_shed/util/tool_util.py' 2024-05-06T23:23:01,873 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2024-05-06T23:23:01,895 adding 'galaxy/tools/__init__.py' 2024-05-06T23:23:01,898 adding 'galaxy/tools/apply_rules.xml' 2024-05-06T23:23:01,899 adding 'galaxy/tools/biotools.py' 2024-05-06T23:23:01,900 adding 'galaxy/tools/build_list.xml' 2024-05-06T23:23:01,902 adding 'galaxy/tools/build_list_1.2.0.xml' 2024-05-06T23:23:01,904 adding 'galaxy/tools/cache.py' 2024-05-06T23:23:01,907 adding 'galaxy/tools/data_fetch.py' 2024-05-06T23:23:01,908 adding 'galaxy/tools/data_fetch.xml' 2024-05-06T23:23:01,910 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2024-05-06T23:23:01,911 adding 'galaxy/tools/errors.py' 2024-05-06T23:23:01,916 adding 'galaxy/tools/evaluation.py' 2024-05-06T23:23:01,918 adding 'galaxy/tools/exception_handling.py' 2024-05-06T23:23:01,921 adding 'galaxy/tools/execute.py' 2024-05-06T23:23:01,922 adding 'galaxy/tools/extract_dataset.xml' 2024-05-06T23:23:01,924 adding 'galaxy/tools/filter_empty_collection.xml' 2024-05-06T23:23:01,925 adding 'galaxy/tools/filter_failed_collection.xml' 2024-05-06T23:23:01,927 adding 'galaxy/tools/filter_from_file.xml' 2024-05-06T23:23:01,929 adding 'galaxy/tools/flatten_collection.xml' 2024-05-06T23:23:01,930 adding 'galaxy/tools/harmonize_two_collections_list.xml' 2024-05-06T23:23:01,931 adding 'galaxy/tools/keep_success_collection.xml' 2024-05-06T23:23:01,933 adding 'galaxy/tools/merge_collection.xml' 2024-05-06T23:23:01,936 adding 'galaxy/tools/recommendations.py' 2024-05-06T23:23:01,937 adding 'galaxy/tools/relabel_from_file.xml' 2024-05-06T23:23:01,939 adding 'galaxy/tools/remote_tool_eval.py' 2024-05-06T23:23:01,940 adding 'galaxy/tools/repositories.py' 2024-05-06T23:23:01,942 adding 'galaxy/tools/sort_collection_list.xml' 2024-05-06T23:23:01,943 adding 'galaxy/tools/special_tools.py' 2024-05-06T23:23:01,945 adding 'galaxy/tools/tag_collection_from_file.xml' 2024-05-06T23:23:01,947 adding 'galaxy/tools/test.py' 2024-05-06T23:23:01,948 adding 'galaxy/tools/unzip_collection.xml' 2024-05-06T23:23:01,952 adding 'galaxy/tools/wrappers.py' 2024-05-06T23:23:01,953 adding 'galaxy/tools/zip_collection.xml' 2024-05-06T23:23:01,961 adding 'galaxy/tools/actions/__init__.py' 2024-05-06T23:23:01,962 adding 'galaxy/tools/actions/data_manager.py' 2024-05-06T23:23:01,963 adding 'galaxy/tools/actions/data_source.py' 2024-05-06T23:23:01,965 adding 'galaxy/tools/actions/history_imp_exp.py' 2024-05-06T23:23:01,967 adding 'galaxy/tools/actions/metadata.py' 2024-05-06T23:23:01,968 adding 'galaxy/tools/actions/model_operations.py' 2024-05-06T23:23:01,970 adding 'galaxy/tools/actions/upload.py' 2024-05-06T23:23:01,972 adding 'galaxy/tools/actions/upload_common.py' 2024-05-06T23:23:01,974 adding 'galaxy/tools/bundled/__init__.py' 2024-05-06T23:23:01,976 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2024-05-06T23:23:01,978 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2024-05-06T23:23:01,979 adding 'galaxy/tools/bundled/data_export/send.py' 2024-05-06T23:23:01,980 adding 'galaxy/tools/bundled/data_export/send.xml' 2024-05-06T23:23:01,983 adding 'galaxy/tools/bundled/data_source/__init__.py' 2024-05-06T23:23:01,984 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2024-05-06T23:23:01,985 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2024-05-06T23:23:01,987 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2024-05-06T23:23:01,988 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2024-05-06T23:23:01,989 adding 'galaxy/tools/bundled/data_source/data_source.py' 2024-05-06T23:23:01,991 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2024-05-06T23:23:01,992 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2024-05-06T23:23:01,993 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2024-05-06T23:23:01,995 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2024-05-06T23:23:01,996 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2024-05-06T23:23:01,997 adding 'galaxy/tools/bundled/data_source/genbank.py' 2024-05-06T23:23:01,999 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2024-05-06T23:23:02,000 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2024-05-06T23:23:02,001 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2024-05-06T23:23:02,003 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2024-05-06T23:23:02,004 adding 'galaxy/tools/bundled/data_source/import.py' 2024-05-06T23:23:02,005 adding 'galaxy/tools/bundled/data_source/import.xml' 2024-05-06T23:23:02,007 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2024-05-06T23:23:02,008 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2024-05-06T23:23:02,009 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2024-05-06T23:23:02,011 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2024-05-06T23:23:02,013 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2024-05-06T23:23:02,014 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2024-05-06T23:23:02,015 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2024-05-06T23:23:02,017 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2024-05-06T23:23:02,018 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2024-05-06T23:23:02,019 adding 'galaxy/tools/bundled/data_source/sra.xml' 2024-05-06T23:23:02,021 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2024-05-06T23:23:02,022 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2024-05-06T23:23:02,024 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2024-05-06T23:23:02,026 adding 'galaxy/tools/bundled/data_source/upload.py' 2024-05-06T23:23:02,028 adding 'galaxy/tools/bundled/data_source/upload.xml' 2024-05-06T23:23:02,029 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2024-05-06T23:23:02,030 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2024-05-06T23:23:02,032 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2024-05-06T23:23:02,033 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2024-05-06T23:23:02,034 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2024-05-06T23:23:02,036 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2024-05-06T23:23:02,037 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2024-05-06T23:23:02,039 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 2024-05-06T23:23:02,041 adding 'galaxy/tools/bundled/extract/__init__.py' 2024-05-06T23:23:02,042 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py' 2024-05-06T23:23:02,044 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml' 2024-05-06T23:23:02,046 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py' 2024-05-06T23:23:02,047 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml' 2024-05-06T23:23:02,050 adding 'galaxy/tools/bundled/filters/CreateInterval.pl' 2024-05-06T23:23:02,051 adding 'galaxy/tools/bundled/filters/CreateInterval.xml' 2024-05-06T23:23:02,053 adding 'galaxy/tools/bundled/filters/__init__.py' 2024-05-06T23:23:02,054 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py' 2024-05-06T23:23:02,055 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml' 2024-05-06T23:23:02,056 adding 'galaxy/tools/bundled/filters/axt_to_fasta.py' 2024-05-06T23:23:02,058 adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml' 2024-05-06T23:23:02,059 adding 'galaxy/tools/bundled/filters/axt_to_lav.py' 2024-05-06T23:23:02,061 adding 'galaxy/tools/bundled/filters/axt_to_lav.xml' 2024-05-06T23:23:02,062 adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py' 2024-05-06T23:23:02,063 adding 'galaxy/tools/bundled/filters/bed2gff.xml' 2024-05-06T23:23:02,065 adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml' 2024-05-06T23:23:02,066 adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py' 2024-05-06T23:23:02,067 adding 'galaxy/tools/bundled/filters/catWrapper.py' 2024-05-06T23:23:02,068 adding 'galaxy/tools/bundled/filters/catWrapper.xml' 2024-05-06T23:23:02,070 adding 'galaxy/tools/bundled/filters/changeCase.pl' 2024-05-06T23:23:02,071 adding 'galaxy/tools/bundled/filters/changeCase.xml' 2024-05-06T23:23:02,072 adding 'galaxy/tools/bundled/filters/commWrapper.pl' 2024-05-06T23:23:02,074 adding 'galaxy/tools/bundled/filters/commWrapper.xml' 2024-05-06T23:23:02,075 adding 'galaxy/tools/bundled/filters/compare.xml' 2024-05-06T23:23:02,076 adding 'galaxy/tools/bundled/filters/condense_characters.pl' 2024-05-06T23:23:02,077 adding 'galaxy/tools/bundled/filters/condense_characters.xml' 2024-05-06T23:23:02,079 adding 'galaxy/tools/bundled/filters/convert_characters.py' 2024-05-06T23:23:02,080 adding 'galaxy/tools/bundled/filters/convert_characters.xml' 2024-05-06T23:23:02,082 adding 'galaxy/tools/bundled/filters/cutWrapper.pl' 2024-05-06T23:23:02,083 adding 'galaxy/tools/bundled/filters/cutWrapper.xml' 2024-05-06T23:23:02,085 adding 'galaxy/tools/bundled/filters/fileGrep.xml' 2024-05-06T23:23:02,086 adding 'galaxy/tools/bundled/filters/fixedValueColumn.pl' 2024-05-06T23:23:02,087 adding 'galaxy/tools/bundled/filters/fixedValueColumn.xml' 2024-05-06T23:23:02,088 adding 'galaxy/tools/bundled/filters/gff2bed.xml' 2024-05-06T23:23:02,090 adding 'galaxy/tools/bundled/filters/gff_to_bed_converter.py' 2024-05-06T23:23:02,091 adding 'galaxy/tools/bundled/filters/grep.py' 2024-05-06T23:23:02,093 adding 'galaxy/tools/bundled/filters/grep.xml' 2024-05-06T23:23:02,094 adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml' 2024-05-06T23:23:02,095 adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml' 2024-05-06T23:23:02,097 adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py' 2024-05-06T23:23:02,098 adding 'galaxy/tools/bundled/filters/headWrapper.xml' 2024-05-06T23:23:02,100 adding 'galaxy/tools/bundled/filters/join.py' 2024-05-06T23:23:02,101 adding 'galaxy/tools/bundled/filters/joinWrapper.py' 2024-05-06T23:23:02,103 adding 'galaxy/tools/bundled/filters/joiner.xml' 2024-05-06T23:23:02,104 adding 'galaxy/tools/bundled/filters/joiner2.xml' 2024-05-06T23:23:02,105 adding 'galaxy/tools/bundled/filters/lav_to_bed.py' 2024-05-06T23:23:02,107 adding 'galaxy/tools/bundled/filters/lav_to_bed.xml' 2024-05-06T23:23:02,108 adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py' 2024-05-06T23:23:02,109 adding 'galaxy/tools/bundled/filters/mergeCols.py' 2024-05-06T23:23:02,110 adding 'galaxy/tools/bundled/filters/mergeCols.xml' 2024-05-06T23:23:02,112 adding 'galaxy/tools/bundled/filters/pasteWrapper.pl' 2024-05-06T23:23:02,113 adding 'galaxy/tools/bundled/filters/pasteWrapper.xml' 2024-05-06T23:23:02,114 adding 'galaxy/tools/bundled/filters/random_lines_two_pass.py' 2024-05-06T23:23:02,116 adding 'galaxy/tools/bundled/filters/randomlines.py' 2024-05-06T23:23:02,117 adding 'galaxy/tools/bundled/filters/randomlines.xml' 2024-05-06T23:23:02,118 adding 'galaxy/tools/bundled/filters/remove_beginning.pl' 2024-05-06T23:23:02,119 adding 'galaxy/tools/bundled/filters/remove_beginning.xml' 2024-05-06T23:23:02,121 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.py' 2024-05-06T23:23:02,122 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.xml' 2024-05-06T23:23:02,128 adding 'galaxy/tools/bundled/filters/sff_extract.py' 2024-05-06T23:23:02,130 adding 'galaxy/tools/bundled/filters/sff_extractor.xml' 2024-05-06T23:23:02,131 adding 'galaxy/tools/bundled/filters/sorter.py' 2024-05-06T23:23:02,133 adding 'galaxy/tools/bundled/filters/sorter.xml' 2024-05-06T23:23:02,134 adding 'galaxy/tools/bundled/filters/tailWrapper.xml' 2024-05-06T23:23:02,135 adding 'galaxy/tools/bundled/filters/trimmer.py' 2024-05-06T23:23:02,137 adding 'galaxy/tools/bundled/filters/trimmer.xml' 2024-05-06T23:23:02,139 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py' 2024-05-06T23:23:02,140 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml' 2024-05-06T23:23:02,142 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py' 2024-05-06T23:23:02,143 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml' 2024-05-06T23:23:02,144 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py' 2024-05-06T23:23:02,146 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml' 2024-05-06T23:23:02,147 adding 'galaxy/tools/bundled/filters/uniq.py' 2024-05-06T23:23:02,149 adding 'galaxy/tools/bundled/filters/uniq.xml' 2024-05-06T23:23:02,150 adding 'galaxy/tools/bundled/filters/wc_gnu.xml' 2024-05-06T23:23:02,152 adding 'galaxy/tools/bundled/filters/wig_to_bigwig.xml' 2024-05-06T23:23:02,153 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.py' 2024-05-06T23:23:02,154 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.xml' 2024-05-06T23:23:02,156 adding 'galaxy/tools/bundled/filters/gff/__init__.py' 2024-05-06T23:23:02,157 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.py' 2024-05-06T23:23:02,159 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml' 2024-05-06T23:23:02,161 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py' 2024-05-06T23:23:02,162 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml' 2024-05-06T23:23:02,164 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py' 2024-05-06T23:23:02,165 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml' 2024-05-06T23:23:02,166 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py' 2024-05-06T23:23:02,167 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml' 2024-05-06T23:23:02,170 adding 'galaxy/tools/bundled/interactive/default_notebook.ipynb' 2024-05-06T23:23:02,171 adding 'galaxy/tools/bundled/interactive/interactivetool_askomics.xml' 2024-05-06T23:23:02,172 adding 'galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml' 2024-05-06T23:23:02,174 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml' 2024-05-06T23:23:02,175 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml' 2024-05-06T23:23:02,177 adding 'galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml' 2024-05-06T23:23:02,178 adding 'galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml' 2024-05-06T23:23:02,180 adding 'galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml' 2024-05-06T23:23:02,181 adding 'galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml' 2024-05-06T23:23:02,182 adding 'galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml' 2024-05-06T23:23:02,184 adding 'galaxy/tools/bundled/interactive/interactivetool_higlass.xml' 2024-05-06T23:23:02,186 adding 'galaxy/tools/bundled/interactive/interactivetool_isee.xml' 2024-05-06T23:23:02,187 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml' 2024-05-06T23:23:02,189 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml' 2024-05-06T23:23:02,191 adding 'galaxy/tools/bundled/interactive/interactivetool_metashark.xml' 2024-05-06T23:23:02,193 adding 'galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml' 2024-05-06T23:23:02,195 adding 'galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml' 2024-05-06T23:23:02,196 adding 'galaxy/tools/bundled/interactive/interactivetool_neo4j.xml' 2024-05-06T23:23:02,197 adding 'galaxy/tools/bundled/interactive/interactivetool_openrefine.xml' 2024-05-06T23:23:02,199 adding 'galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml' 2024-05-06T23:23:02,200 adding 'galaxy/tools/bundled/interactive/interactivetool_panoply.xml' 2024-05-06T23:23:02,201 adding 'galaxy/tools/bundled/interactive/interactivetool_paraview.xml' 2024-05-06T23:23:02,203 adding 'galaxy/tools/bundled/interactive/interactivetool_pavian.xml' 2024-05-06T23:23:02,204 adding 'galaxy/tools/bundled/interactive/interactivetool_phinch.xml' 2024-05-06T23:23:02,206 adding 'galaxy/tools/bundled/interactive/interactivetool_pyiron.xml' 2024-05-06T23:23:02,208 adding 'galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml' 2024-05-06T23:23:02,210 adding 'galaxy/tools/bundled/interactive/interactivetool_radiant.xml' 2024-05-06T23:23:02,211 adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio.xml' 2024-05-06T23:23:02,213 adding 'galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml' 2024-05-06T23:23:02,214 adding 'galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml' 2024-05-06T23:23:02,215 adding 'galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml' 2024-05-06T23:23:02,217 adding 'galaxy/tools/bundled/interactive/interactivetool_wallace.xml' 2024-05-06T23:23:02,218 adding 'galaxy/tools/bundled/interactive/interactivetool_wilson.xml' 2024-05-06T23:23:02,221 adding 'galaxy/tools/bundled/interactive/simtext_app.R' 2024-05-06T23:23:02,223 adding 'galaxy/tools/bundled/maf/__init__.py' 2024-05-06T23:23:02,225 adding 'galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml' 2024-05-06T23:23:02,226 adding 'galaxy/tools/bundled/maf/interval2maf.py' 2024-05-06T23:23:02,228 adding 'galaxy/tools/bundled/maf/interval2maf.xml' 2024-05-06T23:23:02,230 adding 'galaxy/tools/bundled/maf/interval2maf_pairwise.xml' 2024-05-06T23:23:02,231 adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py' 2024-05-06T23:23:02,233 adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml' 2024-05-06T23:23:02,234 adding 'galaxy/tools/bundled/maf/macros.xml' 2024-05-06T23:23:02,235 adding 'galaxy/tools/bundled/maf/maf_by_block_number.py' 2024-05-06T23:23:02,237 adding 'galaxy/tools/bundled/maf/maf_by_block_number.xml' 2024-05-06T23:23:02,238 adding 'galaxy/tools/bundled/maf/maf_filter.py' 2024-05-06T23:23:02,240 adding 'galaxy/tools/bundled/maf/maf_filter.xml' 2024-05-06T23:23:02,241 adding 'galaxy/tools/bundled/maf/maf_limit_size.py' 2024-05-06T23:23:02,243 adding 'galaxy/tools/bundled/maf/maf_limit_size.xml' 2024-05-06T23:23:02,244 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.py' 2024-05-06T23:23:02,246 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.xml' 2024-05-06T23:23:02,247 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.py' 2024-05-06T23:23:02,248 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.xml' 2024-05-06T23:23:02,250 adding 'galaxy/tools/bundled/maf/maf_split_by_species.py' 2024-05-06T23:23:02,252 adding 'galaxy/tools/bundled/maf/maf_split_by_species.xml' 2024-05-06T23:23:02,253 adding 'galaxy/tools/bundled/maf/maf_stats.py' 2024-05-06T23:23:02,255 adding 'galaxy/tools/bundled/maf/maf_stats.xml' 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'tool_shed_client/__init__.py' 2024-05-06T23:23:02,850 adding 'tool_shed_client/py.typed' 2024-05-06T23:23:02,851 adding 'tool_shed_client/trs_util.py' 2024-05-06T23:23:02,853 adding 'tool_shed_client/schema/__init__.py' 2024-05-06T23:23:02,855 adding 'tool_shed_client/schema/trs.py' 2024-05-06T23:23:02,856 adding 'tool_shed_client/schema/trs_service_info.py' 2024-05-06T23:23:02,858 adding 'galaxy_app-24.0.1.dist-info/LICENSE' 2024-05-06T23:23:02,864 adding 'galaxy_app-24.0.1.dist-info/METADATA' 2024-05-06T23:23:02,865 adding 'galaxy_app-24.0.1.dist-info/WHEEL' 2024-05-06T23:23:02,866 adding 'galaxy_app-24.0.1.dist-info/entry_points.txt' 2024-05-06T23:23:02,867 adding 'galaxy_app-24.0.1.dist-info/top_level.txt' 2024-05-06T23:23:02,877 adding 'galaxy_app-24.0.1.dist-info/RECORD' 2024-05-06T23:23:02,903 removing build/bdist.linux-armv7l/wheel 2024-05-06T23:23:03,188 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2024-05-06T23:23:03,231 Created wheel for galaxy-app: filename=galaxy_app-24.0.1-py3-none-any.whl size=1458573 sha256=a203d2b0535783470077aeef294bcf5ef0664ea223202a97c46f96899a1d723b 2024-05-06T23:23:03,233 Stored in directory: /tmp/pip-ephem-wheel-cache-q5n85v73/wheels/7c/72/17/419755a87aa28cc2bccd489834ed34db098a5f2c3f6ffc37f8 2024-05-06T23:23:03,271 Successfully built galaxy-app 2024-05-06T23:23:03,318 Removed build tracker: '/tmp/pip-build-tracker-fbloql18'