2024-05-07T02:06:23,027 Created temporary directory: /tmp/pip-build-tracker-kttqnrwq 2024-05-07T02:06:23,028 Initialized build tracking at /tmp/pip-build-tracker-kttqnrwq 2024-05-07T02:06:23,029 Created build tracker: /tmp/pip-build-tracker-kttqnrwq 2024-05-07T02:06:23,029 Entered build tracker: /tmp/pip-build-tracker-kttqnrwq 2024-05-07T02:06:23,030 Created temporary directory: /tmp/pip-wheel-v3q0i3s3 2024-05-07T02:06:23,033 Created temporary directory: /tmp/pip-ephem-wheel-cache-0qcjyr28 2024-05-07T02:06:23,059 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T02:06:23,063 2 location(s) to search for versions of openpathsampling: 2024-05-07T02:06:23,063 * https://pypi.org/simple/openpathsampling/ 2024-05-07T02:06:23,063 * https://www.piwheels.org/simple/openpathsampling/ 2024-05-07T02:06:23,064 Fetching project page and analyzing links: https://pypi.org/simple/openpathsampling/ 2024-05-07T02:06:23,064 Getting page https://pypi.org/simple/openpathsampling/ 2024-05-07T02:06:23,066 Found index url https://pypi.org/simple/ 2024-05-07T02:06:23,323 Fetched page https://pypi.org/simple/openpathsampling/ as application/vnd.pypi.simple.v1+json 2024-05-07T02:06:23,328 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/02/01/b5365c2ef321ec80bc52ff88892fe024e19f6fa0316ba901ba078ce01c8a/openpathsampling-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-05-07T02:06:23,328 Found link https://files.pythonhosted.org/packages/58/a3/0d2d19010faa28544c34b8182ef45612850cd9c3f8c83b65f0f26bdf7c91/openpathsampling-1.1.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.1.0 2024-05-07T02:06:23,329 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/28/73/3642686e841c49b386e63e85abbfc64910be20dbd45dcae0495011d7bf1f/openpathsampling-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-05-07T02:06:23,330 Found link https://files.pythonhosted.org/packages/88/59/12b6dfa985ed3ca011a031daa2858d2d8cc2b34687c887a44fb7c871613c/openpathsampling-1.2.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.2.0 2024-05-07T02:06:23,330 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/9c/bc/5d3ccbb234f17bde74cbe018acf849aa3bfe37740e0ab3c02c3c9111160e/openpathsampling-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-05-07T02:06:23,331 Found link https://files.pythonhosted.org/packages/ac/ae/ad93f6d3279e6386f63f2d50b4365b8ebb1e91000838635ced2973efe6a0/openpathsampling-1.3.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.3.0 2024-05-07T02:06:23,332 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/9d/a1/31f6bd075512b8fd77d6e479f983ce924e0af8e2ebabff9a88f693831391/openpathsampling-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-05-07T02:06:23,332 Found link https://files.pythonhosted.org/packages/3c/ec/965164f9460776f21bb60dfa464ce04afa52c921ba1c80e1125d6a8a727d/openpathsampling-1.4.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.4.0 2024-05-07T02:06:23,333 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/f1/56/98b67d8bc3a2d48133a38106ec18652a05d3bb475bc666f4667dd052c509/openpathsampling-1.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-05-07T02:06:23,333 Found link https://files.pythonhosted.org/packages/49/97/94db22f357866f716c90426cc83372f0e55d9a7443b05f7832ee7799b3a2/openpathsampling-1.4.1.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.4.1 2024-05-07T02:06:23,334 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/f7/6c/3b86e36ba8486b5223cbf3107d3f0c46a053ecc5c235e98e01f3907d2556/openpathsampling-1.4.2-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-05-07T02:06:23,334 Found link https://files.pythonhosted.org/packages/e1/25/0018a24c030b7690299d81901c8eac84bfe357fdee352a3e16373f1a75ff/openpathsampling-1.4.2.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.4.2 2024-05-07T02:06:23,336 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/9f/d8/9a2478433b597bf6097fd557d5475fb604b9ea7976bcef667ed835cc909f/openpathsampling-1.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-05-07T02:06:23,336 Found link https://files.pythonhosted.org/packages/b4/35/5136b5789163d2f2b6404b1b87fa0cbab52f03526b180f784c1615ec5b1b/openpathsampling-1.5.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.5.0 2024-05-07T02:06:23,337 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/7b/d9/2af8b706afd4e2f659c276893f4542a6edce57a2e69e99adb9b0d1e74796/openpathsampling-1.5.1-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-05-07T02:06:23,337 Found link https://files.pythonhosted.org/packages/2a/45/d6ee86f851d913e8cf6498cf8adcf3cca700ba6c1df8df34512df521189a/openpathsampling-1.5.1.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.5.1 2024-05-07T02:06:23,338 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/8c/36/f1277f8c03c2b7d9de0d9aa2e6e936330d40ee3b585d906e860d6c9e4949/openpathsampling-1.5.2-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-05-07T02:06:23,338 Found link https://files.pythonhosted.org/packages/02/4e/339ec9bc8677dc79021b3db42144a4f7336b2894a6380f23f580ccacd992/openpathsampling-1.5.2.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.5.2 2024-05-07T02:06:23,339 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/a4/b1/3399d16becec9af55b6a6638b4ca407140deee6b626164a2015fe8d660c1/openpathsampling-1.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) (requires-python:<3.12,>3.7) 2024-05-07T02:06:23,340 Found link https://files.pythonhosted.org/packages/e0/8b/a8c16cf82c04153816aec79ac9c6867513a2affa473dec398d4ce021cd50/openpathsampling-1.6.0.tar.gz (from https://pypi.org/simple/openpathsampling/) (requires-python:<3.12,>3.7), version: 1.6.0 2024-05-07T02:06:23,341 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/b7/94/b89b8b41fcb577edcb8ea5eeb40b5fe0eb3993f5e0f35f4a0bf2b3f47b9c/openpathsampling-1.6.1-py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) (requires-python:>=3.10) 2024-05-07T02:06:23,341 Found link https://files.pythonhosted.org/packages/3b/76/b65e806dfd7cbc5abfdecbd7ff1bbf8a21244b6779253293c78fadb13fd3/openpathsampling-1.6.1.tar.gz (from https://pypi.org/simple/openpathsampling/) (requires-python:>=3.10), version: 1.6.1 2024-05-07T02:06:23,342 Fetching project page and analyzing links: https://www.piwheels.org/simple/openpathsampling/ 2024-05-07T02:06:23,343 Getting page https://www.piwheels.org/simple/openpathsampling/ 2024-05-07T02:06:23,344 Found index url https://www.piwheels.org/simple/ 2024-05-07T02:06:23,643 Fetched page https://www.piwheels.org/simple/openpathsampling/ as text/html 2024-05-07T02:06:23,647 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.6.0-py2.py3-none-any.whl#sha256=f38836d7904ebe1e4853fc9a3d6c412400320511eea27df7fed584d1b15040eb (from https://www.piwheels.org/simple/openpathsampling/) (requires-python:<3.12,>3.7) 2024-05-07T02:06:23,648 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.5.2-py2.py3-none-any.whl#sha256=fc22eb29a97a8715d1df829d6cf7b2732ed6c694fef34a0bb1cf51c6275bca76 (from https://www.piwheels.org/simple/openpathsampling/) 2024-05-07T02:06:23,648 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.5.1-py2.py3-none-any.whl#sha256=b19b5ce7651bbe666001369e51b2dc681acca80610e8c8d1fe092badbf908d22 (from https://www.piwheels.org/simple/openpathsampling/) 2024-05-07T02:06:23,649 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.5.0-py2.py3-none-any.whl#sha256=7848543f7191c361a2e3028f0bcb9e3623a15c85d3566ccdfbe386b50874db63 (from https://www.piwheels.org/simple/openpathsampling/) 2024-05-07T02:06:23,650 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.4.2-py2.py3-none-any.whl#sha256=eb561ae485b78b8b3b12e3ee332d22e3e27f331e083508497c9a040fb240ec3b (from https://www.piwheels.org/simple/openpathsampling/) 2024-05-07T02:06:23,650 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.4.1-py2.py3-none-any.whl#sha256=5e36977bd5aa1398eb8b685ae2e743f9ddc082a9dcb44f32c6b9b8b22e78b2af (from https://www.piwheels.org/simple/openpathsampling/) 2024-05-07T02:06:23,651 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.4.0-py2.py3-none-any.whl#sha256=9bd1b86a559d477d9d1ffbe8ca9a444a92969d37704dc484deb193b4e5e87666 (from https://www.piwheels.org/simple/openpathsampling/) 2024-05-07T02:06:23,651 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.3.0-py2.py3-none-any.whl#sha256=c82dcb168f705ca3fb414d8622792c4d9ef3700c41777d0c7b04912df70edf46 (from https://www.piwheels.org/simple/openpathsampling/) 2024-05-07T02:06:23,652 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.2.0-py2.py3-none-any.whl#sha256=15014f6d0f3cef0b8f272d50b15f5475b8ad0fdf3a008a1842700242d75a850c (from https://www.piwheels.org/simple/openpathsampling/) 2024-05-07T02:06:23,652 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.1.0-py2.py3-none-any.whl#sha256=0c9268baddfc1648d879f87e26866fcb091cc87462067216d0b516ca4058524b (from https://www.piwheels.org/simple/openpathsampling/) 2024-05-07T02:06:23,653 Skipping link: not a file: https://www.piwheels.org/simple/openpathsampling/ 2024-05-07T02:06:23,653 Skipping link: not a file: https://pypi.org/simple/openpathsampling/ 2024-05-07T02:06:23,673 Given no hashes to check 1 links for project 'openpathsampling': discarding no candidates 2024-05-07T02:06:23,691 Collecting openpathsampling==1.6.1 2024-05-07T02:06:23,693 Created temporary directory: /tmp/pip-unpack-jr39z3n4 2024-05-07T02:06:23,925 Downloading openpathsampling-1.6.1.tar.gz (3.1 MB) 2024-05-07T02:06:25,345 Added openpathsampling==1.6.1 from https://files.pythonhosted.org/packages/3b/76/b65e806dfd7cbc5abfdecbd7ff1bbf8a21244b6779253293c78fadb13fd3/openpathsampling-1.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-kttqnrwq' 2024-05-07T02:06:25,348 Running setup.py (path:/tmp/pip-wheel-v3q0i3s3/openpathsampling_9c4a8c70f6144f52a404c842a2ee67a8/setup.py) egg_info for package openpathsampling 2024-05-07T02:06:25,349 Created temporary directory: /tmp/pip-pip-egg-info-yz5gxmvf 2024-05-07T02:06:25,350 Preparing metadata (setup.py): started 2024-05-07T02:06:25,351 Running command python setup.py egg_info 2024-05-07T02:06:26,897 running egg_info 2024-05-07T02:06:26,898 creating /tmp/pip-pip-egg-info-yz5gxmvf/openpathsampling.egg-info 2024-05-07T02:06:26,924 writing /tmp/pip-pip-egg-info-yz5gxmvf/openpathsampling.egg-info/PKG-INFO 2024-05-07T02:06:26,929 writing dependency_links to /tmp/pip-pip-egg-info-yz5gxmvf/openpathsampling.egg-info/dependency_links.txt 2024-05-07T02:06:26,932 writing requirements to /tmp/pip-pip-egg-info-yz5gxmvf/openpathsampling.egg-info/requires.txt 2024-05-07T02:06:26,933 writing top-level names to /tmp/pip-pip-egg-info-yz5gxmvf/openpathsampling.egg-info/top_level.txt 2024-05-07T02:06:26,935 writing manifest file '/tmp/pip-pip-egg-info-yz5gxmvf/openpathsampling.egg-info/SOURCES.txt' 2024-05-07T02:06:27,070 reading manifest file '/tmp/pip-pip-egg-info-yz5gxmvf/openpathsampling.egg-info/SOURCES.txt' 2024-05-07T02:06:27,072 reading manifest template 'MANIFEST.in' 2024-05-07T02:06:27,073 warning: manifest_maker: MANIFEST.in, line 1: unknown action 'LICENSE' 2024-05-07T02:06:27,093 adding license file 'LICENSE' 2024-05-07T02:06:27,107 writing manifest file '/tmp/pip-pip-egg-info-yz5gxmvf/openpathsampling.egg-info/SOURCES.txt' 2024-05-07T02:06:27,227 Preparing metadata (setup.py): finished with status 'done' 2024-05-07T02:06:27,231 Source in /tmp/pip-wheel-v3q0i3s3/openpathsampling_9c4a8c70f6144f52a404c842a2ee67a8 has version 1.6.1, which satisfies requirement openpathsampling==1.6.1 from https://files.pythonhosted.org/packages/3b/76/b65e806dfd7cbc5abfdecbd7ff1bbf8a21244b6779253293c78fadb13fd3/openpathsampling-1.6.1.tar.gz 2024-05-07T02:06:27,231 Removed openpathsampling==1.6.1 from https://files.pythonhosted.org/packages/3b/76/b65e806dfd7cbc5abfdecbd7ff1bbf8a21244b6779253293c78fadb13fd3/openpathsampling-1.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-kttqnrwq' 2024-05-07T02:06:27,237 Created temporary directory: /tmp/pip-unpack-3t38xy45 2024-05-07T02:06:27,238 Created temporary directory: /tmp/pip-unpack-5wvqk654 2024-05-07T02:06:27,270 Building wheels for collected packages: openpathsampling 2024-05-07T02:06:27,274 Created temporary directory: /tmp/pip-wheel-ybxjtqqn 2024-05-07T02:06:27,275 Building wheel for openpathsampling (setup.py): started 2024-05-07T02:06:27,276 Destination directory: /tmp/pip-wheel-ybxjtqqn 2024-05-07T02:06:27,276 Running command python setup.py bdist_wheel 2024-05-07T02:06:28,479 running bdist_wheel 2024-05-07T02:06:28,576 running build 2024-05-07T02:06:28,577 running build_py 2024-05-07T02:06:28,607 creating build 2024-05-07T02:06:28,608 creating build/lib 2024-05-07T02:06:28,609 creating build/lib/examples 2024-05-07T02:06:28,610 copying examples/prep_example_data.py -> build/lib/examples 2024-05-07T02:06:28,613 creating build/lib/devtools 2024-05-07T02:06:28,614 copying devtools/setup_cfg_reqs.py -> build/lib/devtools 2024-05-07T02:06:28,615 copying devtools/autorelease_check.py -> build/lib/devtools 2024-05-07T02:06:28,618 creating build/lib/openpathsampling 2024-05-07T02:06:28,619 copying openpathsampling/_installed_version.py -> build/lib/openpathsampling 2024-05-07T02:06:28,620 copying openpathsampling/shooting.py -> build/lib/openpathsampling 2024-05-07T02:06:28,623 copying openpathsampling/__init__.py -> build/lib/openpathsampling 2024-05-07T02:06:28,625 copying openpathsampling/version.py -> build/lib/openpathsampling 2024-05-07T02:06:28,627 copying openpathsampling/range_logic.py -> build/lib/openpathsampling 2024-05-07T02:06:28,629 copying openpathsampling/snapshot_modifier.py -> build/lib/openpathsampling 2024-05-07T02:06:28,632 copying openpathsampling/step_visualizer_2D.py -> build/lib/openpathsampling 2024-05-07T02:06:28,634 copying openpathsampling/collectivevariable.py -> build/lib/openpathsampling 2024-05-07T02:06:28,637 copying openpathsampling/sample.py -> build/lib/openpathsampling 2024-05-07T02:06:28,639 copying openpathsampling/pathmover_inout.py -> build/lib/openpathsampling 2024-05-07T02:06:28,643 copying openpathsampling/treelogic.py -> build/lib/openpathsampling 2024-05-07T02:06:28,646 copying openpathsampling/progress.py -> build/lib/openpathsampling 2024-05-07T02:06:28,648 copying openpathsampling/movechange.py -> build/lib/openpathsampling 2024-05-07T02:06:28,650 copying openpathsampling/ensemble.py -> build/lib/openpathsampling 2024-05-07T02:06:28,655 copying openpathsampling/tools.py -> build/lib/openpathsampling 2024-05-07T02:06:28,658 copying openpathsampling/integration_tools.py -> build/lib/openpathsampling 2024-05-07T02:06:28,660 copying openpathsampling/pathmover.py -> build/lib/openpathsampling 2024-05-07T02:06:28,664 copying openpathsampling/deprecations.py -> build/lib/openpathsampling 2024-05-07T02:06:28,667 copying openpathsampling/volume.py -> build/lib/openpathsampling 2024-05-07T02:06:28,669 copying openpathsampling/rng.py -> build/lib/openpathsampling 2024-05-07T02:06:28,671 copying openpathsampling/visualize.py -> build/lib/openpathsampling 2024-05-07T02:06:28,675 copying openpathsampling/ops_logging.py -> build/lib/openpathsampling 2024-05-07T02:06:28,677 copying openpathsampling/bias_function.py -> build/lib/openpathsampling 2024-05-07T02:06:28,680 creating build/lib/docs 2024-05-07T02:06:28,681 copying docs/conf.py -> build/lib/docs 2024-05-07T02:06:28,684 copying docs/premake.py -> build/lib/docs 2024-05-07T02:06:28,686 creating build/lib/examples/resources 2024-05-07T02:06:28,687 copying examples/resources/toy_plot_helpers.py -> build/lib/examples/resources 2024-05-07T02:06:28,690 creating build/lib/examples/alanine_dipeptide_mstis 2024-05-07T02:06:28,691 copying examples/alanine_dipeptide_mstis/alatools.py -> build/lib/examples/alanine_dipeptide_mstis 2024-05-07T02:06:28,693 creating build/lib/devtools/ci 2024-05-07T02:06:28,694 copying devtools/ci/push-docs-to-s3.py -> build/lib/devtools/ci 2024-05-07T02:06:28,697 creating build/lib/openpathsampling/pathmovers 2024-05-07T02:06:28,698 copying openpathsampling/pathmovers/__init__.py -> build/lib/openpathsampling/pathmovers 2024-05-07T02:06:28,699 copying openpathsampling/pathmovers/move_schemes.py -> build/lib/openpathsampling/pathmovers 2024-05-07T02:06:28,701 copying openpathsampling/pathmovers/move_strategies.py -> build/lib/openpathsampling/pathmovers 2024-05-07T02:06:28,703 copying openpathsampling/pathmovers/spring_shooting.py -> build/lib/openpathsampling/pathmovers 2024-05-07T02:06:28,706 creating build/lib/openpathsampling/strategies 2024-05-07T02:06:28,707 copying openpathsampling/strategies/__init__.py -> build/lib/openpathsampling/strategies 2024-05-07T02:06:28,710 creating build/lib/openpathsampling/tests 2024-05-07T02:06:28,711 copying openpathsampling/tests/test_pathsimulator.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,715 copying openpathsampling/tests/test_shooting_point_analysis.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,717 copying openpathsampling/tests/test_reactive_flux_analysis.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,719 copying openpathsampling/tests/__init__.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,721 copying openpathsampling/tests/test_ms_outer_interface.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,724 copying openpathsampling/tests/test_helpers.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,726 copying openpathsampling/tests/test_visit_all_states.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,729 copying openpathsampling/tests/test_spring_shooting.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,731 copying openpathsampling/tests/test_progress.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,733 copying openpathsampling/tests/test_plumed_wrapper.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,735 copying openpathsampling/tests/test_storage.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,738 copying openpathsampling/tests/test_toy_features.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,740 copying openpathsampling/tests/test_deprecations.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,742 copying openpathsampling/tests/test_openmm_snapshot.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,744 copying openpathsampling/tests/test_transitions.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,747 copying openpathsampling/tests/test_features.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,748 copying openpathsampling/tests/test_movestrategy.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,752 copying openpathsampling/tests/test_gromacs_engine.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,754 copying openpathsampling/tests/test_shooting.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,756 copying openpathsampling/tests/test_channel_analysis.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,759 copying openpathsampling/tests/test_dynamicsengine.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,761 copying openpathsampling/tests/test_tools.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,763 copying openpathsampling/tests/test_integration_tools.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,764 copying openpathsampling/tests/test_pathmover.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,767 copying openpathsampling/tests/test_api.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,769 copying openpathsampling/tests/test_mdtraj_support.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,770 copying openpathsampling/tests/test_part_in_b_tps.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,772 copying openpathsampling/tests/test_collectivevariable.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,774 copying openpathsampling/tests/test_histogram.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,776 copying openpathsampling/tests/test_attribute.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,778 copying openpathsampling/tests/test_resampling_statistics.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,780 copying openpathsampling/tests/test_external_snapshots.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,782 copying openpathsampling/tests/test_shared.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,784 copying openpathsampling/tests/test_trajectory_transition_analysis.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,786 copying openpathsampling/tests/test_pyemma_cv.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,788 copying openpathsampling/tests/test_sample.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,790 copying openpathsampling/tests/test_toy_dynamics.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,792 copying openpathsampling/tests/test_snapshot.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,794 copying openpathsampling/tests/test_openmm_tools.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,796 copying openpathsampling/tests/test_interface_set.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,798 copying openpathsampling/tests/test_sshooting_analysis.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,800 copying openpathsampling/tests/test_tis_analysis.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,803 copying openpathsampling/tests/test_movescheme.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,806 copying openpathsampling/tests/test_network.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,808 copying openpathsampling/tests/test_lookup_function.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,810 copying openpathsampling/tests/test_wham.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,813 copying openpathsampling/tests/test_snapshot_modifier.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,816 copying openpathsampling/tests/test_bias_function.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,818 copying openpathsampling/tests/test_external_engine.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,820 copying openpathsampling/tests/test_openmm_engine.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,822 copying openpathsampling/tests/test_sshooting_simulator.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,824 copying openpathsampling/tests/test_trajectory.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,826 copying openpathsampling/tests/test_path_histogram.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,829 copying openpathsampling/tests/test_ensemble.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,833 copying openpathsampling/tests/test_rng.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,835 copying openpathsampling/tests/test_range_logic.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,837 copying openpathsampling/tests/test_netcdfplus_base.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,838 copying openpathsampling/tests/test_volume.py -> build/lib/openpathsampling/tests 2024-05-07T02:06:28,841 creating build/lib/openpathsampling/pathsimulators 2024-05-07T02:06:28,842 copying openpathsampling/pathsimulators/__init__.py -> build/lib/openpathsampling/pathsimulators 2024-05-07T02:06:28,844 copying openpathsampling/pathsimulators/reactive_flux.py -> build/lib/openpathsampling/pathsimulators 2024-05-07T02:06:28,846 copying openpathsampling/pathsimulators/path_simulator.py -> build/lib/openpathsampling/pathsimulators 2024-05-07T02:06:28,848 copying openpathsampling/pathsimulators/bootstrap_init_conds.py -> build/lib/openpathsampling/pathsimulators 2024-05-07T02:06:28,850 copying openpathsampling/pathsimulators/direct_md.py -> build/lib/openpathsampling/pathsimulators 2024-05-07T02:06:28,852 copying openpathsampling/pathsimulators/path_sampling.py -> build/lib/openpathsampling/pathsimulators 2024-05-07T02:06:28,855 copying openpathsampling/pathsimulators/sshooting_simulator.py -> build/lib/openpathsampling/pathsimulators 2024-05-07T02:06:28,856 copying openpathsampling/pathsimulators/shoot_snapshots.py -> build/lib/openpathsampling/pathsimulators 2024-05-07T02:06:28,859 creating build/lib/openpathsampling/netcdfplus 2024-05-07T02:06:28,860 copying openpathsampling/netcdfplus/__init__.py -> build/lib/openpathsampling/netcdfplus 2024-05-07T02:06:28,862 copying openpathsampling/netcdfplus/attribute.py -> build/lib/openpathsampling/netcdfplus 2024-05-07T02:06:28,864 copying openpathsampling/netcdfplus/version.py -> build/lib/openpathsampling/netcdfplus 2024-05-07T02:06:28,866 copying openpathsampling/netcdfplus/netcdfplus.py -> build/lib/openpathsampling/netcdfplus 2024-05-07T02:06:28,869 copying openpathsampling/netcdfplus/dictify.py -> build/lib/openpathsampling/netcdfplus 2024-05-07T02:06:28,871 copying openpathsampling/netcdfplus/chaindict.py -> build/lib/openpathsampling/netcdfplus 2024-05-07T02:06:28,873 copying openpathsampling/netcdfplus/cache.py -> build/lib/openpathsampling/netcdfplus 2024-05-07T02:06:28,876 copying openpathsampling/netcdfplus/proxy.py -> build/lib/openpathsampling/netcdfplus 2024-05-07T02:06:28,878 copying openpathsampling/netcdfplus/base.py -> build/lib/openpathsampling/netcdfplus 2024-05-07T02:06:28,880 copying openpathsampling/netcdfplus/util.py -> build/lib/openpathsampling/netcdfplus 2024-05-07T02:06:28,882 creating build/lib/openpathsampling/beta 2024-05-07T02:06:28,883 copying openpathsampling/beta/__init__.py -> build/lib/openpathsampling/beta 2024-05-07T02:06:28,885 copying openpathsampling/beta/hooks.py -> build/lib/openpathsampling/beta 2024-05-07T02:06:28,887 creating build/lib/openpathsampling/analysis 2024-05-07T02:06:28,888 copying openpathsampling/analysis/__init__.py -> build/lib/openpathsampling/analysis 2024-05-07T02:06:28,890 copying openpathsampling/analysis/shooting_point_analysis.py -> build/lib/openpathsampling/analysis 2024-05-07T02:06:28,893 copying openpathsampling/analysis/path_histogram.py -> build/lib/openpathsampling/analysis 2024-05-07T02:06:28,895 copying openpathsampling/analysis/channel_analysis.py -> build/lib/openpathsampling/analysis 2024-05-07T02:06:28,898 copying openpathsampling/analysis/ensemble_representation.py -> build/lib/openpathsampling/analysis 2024-05-07T02:06:28,900 copying openpathsampling/analysis/replica_network.py -> build/lib/openpathsampling/analysis 2024-05-07T02:06:28,903 copying openpathsampling/analysis/trajectory_transition_analysis.py -> build/lib/openpathsampling/analysis 2024-05-07T02:06:28,906 copying openpathsampling/analysis/reactive_flux_analysis.py -> build/lib/openpathsampling/analysis 2024-05-07T02:06:28,908 copying openpathsampling/analysis/tools.py -> build/lib/openpathsampling/analysis 2024-05-07T02:06:28,910 copying openpathsampling/analysis/sshooting_analysis.py -> build/lib/openpathsampling/analysis 2024-05-07T02:06:28,913 creating build/lib/openpathsampling/ensembles 2024-05-07T02:06:28,914 copying openpathsampling/ensembles/__init__.py -> build/lib/openpathsampling/ensembles 2024-05-07T02:06:28,915 copying openpathsampling/ensembles/visit_all_states.py -> build/lib/openpathsampling/ensembles 2024-05-07T02:06:28,918 creating build/lib/openpathsampling/high_level 2024-05-07T02:06:28,919 copying openpathsampling/high_level/ms_outer_interface.py -> build/lib/openpathsampling/high_level 2024-05-07T02:06:28,921 copying openpathsampling/high_level/__init__.py -> build/lib/openpathsampling/high_level 2024-05-07T02:06:28,923 copying openpathsampling/high_level/part_in_b_tps.py -> build/lib/openpathsampling/high_level 2024-05-07T02:06:28,925 copying openpathsampling/high_level/transition.py -> build/lib/openpathsampling/high_level 2024-05-07T02:06:28,927 copying openpathsampling/high_level/move_strategy.py -> build/lib/openpathsampling/high_level 2024-05-07T02:06:28,931 copying openpathsampling/high_level/move_scheme.py -> build/lib/openpathsampling/high_level 2024-05-07T02:06:28,934 copying openpathsampling/high_level/network.py -> build/lib/openpathsampling/high_level 2024-05-07T02:06:28,937 copying openpathsampling/high_level/interface_set.py -> build/lib/openpathsampling/high_level 2024-05-07T02:06:28,940 creating build/lib/openpathsampling/engines 2024-05-07T02:06:28,941 copying openpathsampling/engines/__init__.py -> build/lib/openpathsampling/engines 2024-05-07T02:06:28,943 copying openpathsampling/engines/delayedinterrupt.py -> build/lib/openpathsampling/engines 2024-05-07T02:06:28,944 copying openpathsampling/engines/snapshot.py -> build/lib/openpathsampling/engines 2024-05-07T02:06:28,947 copying openpathsampling/engines/dynamics_engine.py -> build/lib/openpathsampling/engines 2024-05-07T02:06:28,949 copying openpathsampling/engines/topology.py -> build/lib/openpathsampling/engines 2024-05-07T02:06:28,951 copying openpathsampling/engines/trajectory.py -> build/lib/openpathsampling/engines 2024-05-07T02:06:28,954 copying openpathsampling/engines/external_engine.py -> build/lib/openpathsampling/engines 2024-05-07T02:06:28,956 creating build/lib/openpathsampling/experimental 2024-05-07T02:06:28,957 copying openpathsampling/experimental/__init__.py -> build/lib/openpathsampling/experimental 2024-05-07T02:06:28,960 creating build/lib/openpathsampling/collectivevariables 2024-05-07T02:06:28,961 copying openpathsampling/collectivevariables/__init__.py -> build/lib/openpathsampling/collectivevariables 2024-05-07T02:06:28,963 copying openpathsampling/collectivevariables/plumed_wrapper.py -> build/lib/openpathsampling/collectivevariables 2024-05-07T02:06:28,966 creating build/lib/openpathsampling/numerics 2024-05-07T02:06:28,967 copying openpathsampling/numerics/__init__.py -> build/lib/openpathsampling/numerics 2024-05-07T02:06:28,969 copying openpathsampling/numerics/resampling_statistics.py -> build/lib/openpathsampling/numerics 2024-05-07T02:06:28,972 copying openpathsampling/numerics/wham.py -> build/lib/openpathsampling/numerics 2024-05-07T02:06:28,974 copying openpathsampling/numerics/histogram.py -> build/lib/openpathsampling/numerics 2024-05-07T02:06:28,977 copying openpathsampling/numerics/lookup_function.py -> build/lib/openpathsampling/numerics 2024-05-07T02:06:28,980 creating build/lib/openpathsampling/storage 2024-05-07T02:06:28,981 copying openpathsampling/storage/__init__.py -> build/lib/openpathsampling/storage 2024-05-07T02:06:28,983 copying openpathsampling/storage/storage.py -> build/lib/openpathsampling/storage 2024-05-07T02:06:28,985 copying openpathsampling/storage/distributed.py -> build/lib/openpathsampling/storage 2024-05-07T02:06:28,987 copying openpathsampling/storage/util.py -> build/lib/openpathsampling/storage 2024-05-07T02:06:28,990 creating build/lib/openpathsampling/tests/pathsimulators 2024-05-07T02:06:28,991 copying openpathsampling/tests/pathsimulators/__init__.py -> build/lib/openpathsampling/tests/pathsimulators 2024-05-07T02:06:28,992 copying openpathsampling/tests/pathsimulators/test_hooks.py -> build/lib/openpathsampling/tests/pathsimulators 2024-05-07T02:06:28,995 creating build/lib/openpathsampling/tests/external_engine 2024-05-07T02:06:28,996 copying openpathsampling/tests/external_engine/microtest.py -> build/lib/openpathsampling/tests/external_engine 2024-05-07T02:06:28,999 creating build/lib/openpathsampling/tests/analysis 2024-05-07T02:06:29,000 copying openpathsampling/tests/analysis/__init__.py -> build/lib/openpathsampling/tests/analysis 2024-05-07T02:06:29,001 copying openpathsampling/tests/analysis/conftest.py -> build/lib/openpathsampling/tests/analysis 2024-05-07T02:06:29,004 creating build/lib/openpathsampling/tests/analysis/utils 2024-05-07T02:06:29,005 copying openpathsampling/tests/analysis/utils/__init__.py -> build/lib/openpathsampling/tests/analysis/utils 2024-05-07T02:06:29,006 copying openpathsampling/tests/analysis/utils/test_mock_movers.py -> build/lib/openpathsampling/tests/analysis/utils 2024-05-07T02:06:29,009 copying openpathsampling/tests/analysis/utils/mock_movers.py -> build/lib/openpathsampling/tests/analysis/utils 2024-05-07T02:06:29,012 copying openpathsampling/tests/analysis/utils/fixture_classes.py -> build/lib/openpathsampling/tests/analysis/utils 2024-05-07T02:06:29,014 copying openpathsampling/tests/analysis/utils/test_fixture_classes.py -> build/lib/openpathsampling/tests/analysis/utils 2024-05-07T02:06:29,018 creating build/lib/openpathsampling/netcdfplus/stores 2024-05-07T02:06:29,019 copying openpathsampling/netcdfplus/stores/__init__.py -> build/lib/openpathsampling/netcdfplus/stores 2024-05-07T02:06:29,021 copying openpathsampling/netcdfplus/stores/attribute.py -> build/lib/openpathsampling/netcdfplus/stores 2024-05-07T02:06:29,023 copying openpathsampling/netcdfplus/stores/named.py -> build/lib/openpathsampling/netcdfplus/stores 2024-05-07T02:06:29,026 copying openpathsampling/netcdfplus/stores/dict.py -> build/lib/openpathsampling/netcdfplus/stores 2024-05-07T02:06:29,028 copying openpathsampling/netcdfplus/stores/object.py -> build/lib/openpathsampling/netcdfplus/stores 2024-05-07T02:06:29,031 copying openpathsampling/netcdfplus/stores/indexed.py -> build/lib/openpathsampling/netcdfplus/stores 2024-05-07T02:06:29,033 copying openpathsampling/netcdfplus/stores/variable.py -> build/lib/openpathsampling/netcdfplus/stores 2024-05-07T02:06:29,035 copying openpathsampling/netcdfplus/stores/value.py -> build/lib/openpathsampling/netcdfplus/stores 2024-05-07T02:06:29,037 creating build/lib/openpathsampling/analysis/tis 2024-05-07T02:06:29,038 copying openpathsampling/analysis/tis/__init__.py -> build/lib/openpathsampling/analysis/tis 2024-05-07T02:06:29,040 copying openpathsampling/analysis/tis/misc.py -> build/lib/openpathsampling/analysis/tis 2024-05-07T02:06:29,042 copying openpathsampling/analysis/tis/crossing_probability.py -> build/lib/openpathsampling/analysis/tis 2024-05-07T02:06:29,044 copying openpathsampling/analysis/tis/core.py -> build/lib/openpathsampling/analysis/tis 2024-05-07T02:06:29,047 copying openpathsampling/analysis/tis/standard_analysis.py -> build/lib/openpathsampling/analysis/tis 2024-05-07T02:06:29,049 copying openpathsampling/analysis/tis/flux.py -> build/lib/openpathsampling/analysis/tis 2024-05-07T02:06:29,052 creating build/lib/openpathsampling/engines/gromacs 2024-05-07T02:06:29,053 copying openpathsampling/engines/gromacs/__init__.py -> build/lib/openpathsampling/engines/gromacs 2024-05-07T02:06:29,055 copying openpathsampling/engines/gromacs/engine.py -> build/lib/openpathsampling/engines/gromacs 2024-05-07T02:06:29,058 creating build/lib/openpathsampling/engines/external_snapshots 2024-05-07T02:06:29,059 copying openpathsampling/engines/external_snapshots/__init__.py -> build/lib/openpathsampling/engines/external_snapshots 2024-05-07T02:06:29,061 copying openpathsampling/engines/external_snapshots/snapshot.py -> build/lib/openpathsampling/engines/external_snapshots 2024-05-07T02:06:29,064 creating build/lib/openpathsampling/engines/toy 2024-05-07T02:06:29,065 copying openpathsampling/engines/toy/__init__.py -> build/lib/openpathsampling/engines/toy 2024-05-07T02:06:29,067 copying openpathsampling/engines/toy/snapshot.py -> build/lib/openpathsampling/engines/toy 2024-05-07T02:06:29,069 copying openpathsampling/engines/toy/engine.py -> build/lib/openpathsampling/engines/toy 2024-05-07T02:06:29,071 copying openpathsampling/engines/toy/topology.py -> build/lib/openpathsampling/engines/toy 2024-05-07T02:06:29,072 copying openpathsampling/engines/toy/pes.py -> build/lib/openpathsampling/engines/toy 2024-05-07T02:06:29,075 copying openpathsampling/engines/toy/integrators.py -> build/lib/openpathsampling/engines/toy 2024-05-07T02:06:29,078 creating build/lib/openpathsampling/engines/openmm 2024-05-07T02:06:29,078 copying openpathsampling/engines/openmm/__init__.py -> build/lib/openpathsampling/engines/openmm 2024-05-07T02:06:29,080 copying openpathsampling/engines/openmm/snapshot.py -> build/lib/openpathsampling/engines/openmm 2024-05-07T02:06:29,082 copying openpathsampling/engines/openmm/engine.py -> build/lib/openpathsampling/engines/openmm 2024-05-07T02:06:29,085 copying openpathsampling/engines/openmm/topology.py -> build/lib/openpathsampling/engines/openmm 2024-05-07T02:06:29,086 copying openpathsampling/engines/openmm/tools.py -> build/lib/openpathsampling/engines/openmm 2024-05-07T02:06:29,090 creating build/lib/openpathsampling/engines/features 2024-05-07T02:06:29,091 copying openpathsampling/engines/features/__init__.py -> build/lib/openpathsampling/engines/features 2024-05-07T02:06:29,092 copying openpathsampling/engines/features/velocities.py -> build/lib/openpathsampling/engines/features 2024-05-07T02:06:29,094 copying openpathsampling/engines/features/coordinates.py -> build/lib/openpathsampling/engines/features 2024-05-07T02:06:29,096 copying openpathsampling/engines/features/engine.py -> build/lib/openpathsampling/engines/features 2024-05-07T02:06:29,098 copying openpathsampling/engines/features/kinetics.py -> build/lib/openpathsampling/engines/features 2024-05-07T02:06:29,100 copying openpathsampling/engines/features/shared.py -> build/lib/openpathsampling/engines/features 2024-05-07T02:06:29,102 copying openpathsampling/engines/features/topology.py -> build/lib/openpathsampling/engines/features 2024-05-07T02:06:29,104 copying openpathsampling/engines/features/box_vectors.py -> build/lib/openpathsampling/engines/features 2024-05-07T02:06:29,106 copying openpathsampling/engines/features/statics.py -> build/lib/openpathsampling/engines/features 2024-05-07T02:06:29,108 copying openpathsampling/engines/features/base.py -> build/lib/openpathsampling/engines/features 2024-05-07T02:06:29,111 copying openpathsampling/engines/features/numpydoctools.py -> build/lib/openpathsampling/engines/features 2024-05-07T02:06:29,113 creating build/lib/openpathsampling/engines/external_snapshots/features 2024-05-07T02:06:29,114 copying openpathsampling/engines/external_snapshots/features/__init__.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-05-07T02:06:29,116 copying openpathsampling/engines/external_snapshots/features/velocities.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-05-07T02:06:29,118 copying openpathsampling/engines/external_snapshots/features/coordinates.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-05-07T02:06:29,120 copying openpathsampling/engines/external_snapshots/features/box_vectors.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-05-07T02:06:29,122 copying openpathsampling/engines/external_snapshots/features/file_info.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-05-07T02:06:29,124 creating build/lib/openpathsampling/engines/toy/features 2024-05-07T02:06:29,125 copying openpathsampling/engines/toy/features/__init__.py -> build/lib/openpathsampling/engines/toy/features 2024-05-07T02:06:29,127 copying openpathsampling/engines/toy/features/instantaneous_temperature.py -> build/lib/openpathsampling/engines/toy/features 2024-05-07T02:06:29,129 creating build/lib/openpathsampling/engines/openmm/features 2024-05-07T02:06:29,130 copying openpathsampling/engines/openmm/features/__init__.py -> build/lib/openpathsampling/engines/openmm/features 2024-05-07T02:06:29,132 copying openpathsampling/engines/openmm/features/traj_quantities.py -> build/lib/openpathsampling/engines/openmm/features 2024-05-07T02:06:29,134 copying openpathsampling/engines/openmm/features/instantaneous_temperature.py -> build/lib/openpathsampling/engines/openmm/features 2024-05-07T02:06:29,136 copying openpathsampling/engines/openmm/features/masses.py -> build/lib/openpathsampling/engines/openmm/features 2024-05-07T02:06:29,139 creating build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,140 copying openpathsampling/experimental/simstore/test_type_ident.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,141 copying openpathsampling/experimental/simstore/__init__.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,143 copying openpathsampling/experimental/simstore/storable_functions.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,146 copying openpathsampling/experimental/simstore/test_storable_function_integration.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,148 copying openpathsampling/experimental/simstore/class_lookup.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,150 copying openpathsampling/experimental/simstore/test_serialization_helpers.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,153 copying openpathsampling/experimental/simstore/memory_backend.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,155 copying openpathsampling/experimental/simstore/callable_codec.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,157 copying openpathsampling/experimental/simstore/test_storage.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,159 copying openpathsampling/experimental/simstore/storage.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,162 copying openpathsampling/experimental/simstore/tags_table.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,164 copying openpathsampling/experimental/simstore/serialization_helpers.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,167 copying openpathsampling/experimental/simstore/attribute_handlers.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,169 copying openpathsampling/experimental/simstore/test_tools.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,171 copying openpathsampling/experimental/simstore/uuids.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,172 copying openpathsampling/experimental/simstore/test_storable_function.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,175 copying openpathsampling/experimental/simstore/type_ident.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,177 copying openpathsampling/experimental/simstore/test_utils.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,179 copying openpathsampling/experimental/simstore/test_tags_table.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,181 copying openpathsampling/experimental/simstore/wrapper.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,183 copying openpathsampling/experimental/simstore/tools.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,185 copying openpathsampling/experimental/simstore/class_info.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,188 copying openpathsampling/experimental/simstore/test_class_info.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,190 copying openpathsampling/experimental/simstore/test_dict_serialization_helpers.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,192 copying openpathsampling/experimental/simstore/sql_backend.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,195 copying openpathsampling/experimental/simstore/proxy.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,197 copying openpathsampling/experimental/simstore/test_custom_json.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,199 copying openpathsampling/experimental/simstore/dict_serialization_helpers.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,201 copying openpathsampling/experimental/simstore/serialization.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,203 copying openpathsampling/experimental/simstore/test_callable_codec.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,205 copying openpathsampling/experimental/simstore/custom_json.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,207 copying openpathsampling/experimental/simstore/test_attribute_handlers.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,209 copying openpathsampling/experimental/simstore/my_types.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,211 copying openpathsampling/experimental/simstore/test_serialization.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,213 copying openpathsampling/experimental/simstore/test_sql_backend.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,216 copying openpathsampling/experimental/simstore/test_backend.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,218 copying openpathsampling/experimental/simstore/backend.py -> build/lib/openpathsampling/experimental/simstore 2024-05-07T02:06:29,220 creating build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,221 copying openpathsampling/experimental/storage/__init__.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,223 copying openpathsampling/experimental/storage/ops_storage.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,226 copying openpathsampling/experimental/storage/test_simtk_unit.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,228 copying openpathsampling/experimental/storage/test_snapshots_table.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,230 copying openpathsampling/experimental/storage/test_pathsampling.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,232 copying openpathsampling/experimental/storage/test_mdtraj_json.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,234 copying openpathsampling/experimental/storage/simtk_unit.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,236 copying openpathsampling/experimental/storage/test_regressions.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,238 copying openpathsampling/experimental/storage/snapshots.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,240 copying openpathsampling/experimental/storage/test_collective_variables.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,242 copying openpathsampling/experimental/storage/mdtraj_json.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,244 copying openpathsampling/experimental/storage/monkey_patches.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,246 copying openpathsampling/experimental/storage/test_snapshot_integrations.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,248 copying openpathsampling/experimental/storage/test_monkey_patches.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,250 copying openpathsampling/experimental/storage/test_snapshots.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,252 copying openpathsampling/experimental/storage/snapshots_table.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,254 copying openpathsampling/experimental/storage/collective_variables.py -> build/lib/openpathsampling/experimental/storage 2024-05-07T02:06:29,256 creating build/lib/openpathsampling/experimental/simstore/regressions 2024-05-07T02:06:29,257 copying openpathsampling/experimental/simstore/regressions/test_numpy_sfrs.py -> build/lib/openpathsampling/experimental/simstore/regressions 2024-05-07T02:06:29,260 creating build/lib/openpathsampling/storage/stores 2024-05-07T02:06:29,261 copying openpathsampling/storage/stores/__init__.py -> build/lib/openpathsampling/storage/stores 2024-05-07T02:06:29,263 copying openpathsampling/storage/stores/snapshot_wrapper.py -> build/lib/openpathsampling/storage/stores 2024-05-07T02:06:29,265 copying openpathsampling/storage/stores/snapshot_value.py -> build/lib/openpathsampling/storage/stores 2024-05-07T02:06:29,267 copying openpathsampling/storage/stores/collectivevariable.py -> build/lib/openpathsampling/storage/stores 2024-05-07T02:06:29,269 copying openpathsampling/storage/stores/sample.py -> build/lib/openpathsampling/storage/stores 2024-05-07T02:06:29,271 copying openpathsampling/storage/stores/snapshot_base.py -> build/lib/openpathsampling/storage/stores 2024-05-07T02:06:29,273 copying openpathsampling/storage/stores/movechange.py -> build/lib/openpathsampling/storage/stores 2024-05-07T02:06:29,275 copying openpathsampling/storage/stores/pathsimulator.py -> build/lib/openpathsampling/storage/stores 2024-05-07T02:06:29,277 copying openpathsampling/storage/stores/mcstep.py -> build/lib/openpathsampling/storage/stores 2024-05-07T02:06:29,279 copying openpathsampling/storage/stores/trajectory.py -> build/lib/openpathsampling/storage/stores 2024-05-07T02:06:29,280 copying openpathsampling/storage/stores/snapshot_feature.py -> build/lib/openpathsampling/storage/stores 2024-05-07T02:06:29,283 creating build/lib/docs/sphinxext 2024-05-07T02:06:29,284 copying docs/sphinxext/notebook_sphinxext.py -> build/lib/docs/sphinxext 2024-05-07T02:06:29,286 copying docs/sphinxext/pandoc_sphinxext.py -> build/lib/docs/sphinxext 2024-05-07T02:06:29,288 creating build/lib/docs/copyfiles 2024-05-07T02:06:29,289 copying docs/copyfiles/copyfiles.py -> build/lib/docs/copyfiles 2024-05-07T02:06:29,291 running egg_info 2024-05-07T02:06:29,346 writing openpathsampling.egg-info/PKG-INFO 2024-05-07T02:06:29,351 writing dependency_links to openpathsampling.egg-info/dependency_links.txt 2024-05-07T02:06:29,354 writing requirements to openpathsampling.egg-info/requires.txt 2024-05-07T02:06:29,355 writing top-level names to openpathsampling.egg-info/top_level.txt 2024-05-07T02:06:29,423 reading manifest file 'openpathsampling.egg-info/SOURCES.txt' 2024-05-07T02:06:29,435 reading manifest template 'MANIFEST.in' 2024-05-07T02:06:29,436 warning: manifest_maker: MANIFEST.in, line 1: unknown action 'LICENSE' 2024-05-07T02:06:29,457 adding license file 'LICENSE' 2024-05-07T02:06:29,475 writing manifest file 'openpathsampling.egg-info/SOURCES.txt' 2024-05-07T02:06:29,500 copying openpathsampling/.gitignore -> build/lib/openpathsampling 2024-05-07T02:06:29,502 copying openpathsampling/README.md -> build/lib/openpathsampling 2024-05-07T02:06:29,504 copying openpathsampling/logging.conf -> build/lib/openpathsampling 2024-05-07T02:06:29,506 copying openpathsampling/pathmovers/README.md -> build/lib/openpathsampling/pathmovers 2024-05-07T02:06:29,508 copying openpathsampling/tests/.gitignore -> build/lib/openpathsampling/tests 2024-05-07T02:06:29,510 copying openpathsampling/analysis/.gitignore -> build/lib/openpathsampling/analysis 2024-05-07T02:06:29,512 copying openpathsampling/ensembles/README.md -> build/lib/openpathsampling/ensembles 2024-05-07T02:06:29,515 copying openpathsampling/experimental/README.md -> build/lib/openpathsampling/experimental 2024-05-07T02:06:29,517 copying openpathsampling/collectivevariables/README.md -> build/lib/openpathsampling/collectivevariables 2024-05-07T02:06:29,518 creating build/lib/openpathsampling/resources 2024-05-07T02:06:29,519 copying openpathsampling/resources/debug_logging.conf -> build/lib/openpathsampling/resources 2024-05-07T02:06:29,522 copying openpathsampling/resources/engine_debug.conf -> build/lib/openpathsampling/resources 2024-05-07T02:06:29,524 copying openpathsampling/resources/logging.conf -> build/lib/openpathsampling/resources 2024-05-07T02:06:29,527 copying openpathsampling/resources/vis.css -> build/lib/openpathsampling/resources 2024-05-07T02:06:29,529 copying openpathsampling/tests/external_engine/Makefile -> build/lib/openpathsampling/tests/external_engine 2024-05-07T02:06:29,531 copying openpathsampling/tests/external_engine/engine.c -> build/lib/openpathsampling/tests/external_engine 2024-05-07T02:06:29,533 creating build/lib/openpathsampling/tests/test_data 2024-05-07T02:06:29,534 copying openpathsampling/tests/test_data/ala_small_traj.pdb -> build/lib/openpathsampling/tests/test_data 2024-05-07T02:06:29,562 copying openpathsampling/tests/test_data/tip4p_water.pdb -> build/lib/openpathsampling/tests/test_data 2024-05-07T02:06:29,564 creating build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-05-07T02:06:29,565 copying openpathsampling/tests/test_data/gromacs_engine/conf.gro -> build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-05-07T02:06:29,571 copying openpathsampling/tests/test_data/gromacs_engine/md.mdp -> build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-05-07T02:06:29,573 copying openpathsampling/tests/test_data/gromacs_engine/topol.top -> build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-05-07T02:06:29,576 copying openpathsampling/tests/test_data/gromacs_engine/traj.trr -> build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-05-07T02:06:29,581 creating build/lib/openpathsampling/tests/test_data/apis 2024-05-07T02:06:29,582 copying openpathsampling/tests/test_data/apis/ops1x0_api.txt -> build/lib/openpathsampling/tests/test_data/apis 2024-05-07T02:06:29,585 creating build/lib/openpathsampling/tests/test_data/reduce_box_vects 2024-05-07T02:06:29,587 copying openpathsampling/tests/test_data/reduce_box_vects/dna.gro -> build/lib/openpathsampling/tests/test_data/reduce_box_vects 2024-05-07T02:06:29,590 copying openpathsampling/tests/test_data/reduce_box_vects/dna.trr -> build/lib/openpathsampling/tests/test_data/reduce_box_vects 2024-05-07T02:06:29,594 creating build/lib/openpathsampling/tests/test_data/plumed_wrapper 2024-05-07T02:06:29,595 copying openpathsampling/tests/test_data/plumed_wrapper/AD_initial_frame.pdb -> build/lib/openpathsampling/tests/test_data/plumed_wrapper 2024-05-07T02:06:29,600 copying openpathsampling/tests/test_data/plumed_wrapper/AD_plumed_rmsd.pdb -> build/lib/openpathsampling/tests/test_data/plumed_wrapper 2024-05-07T02:06:29,602 creating build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-05-07T02:06:29,604 copying openpathsampling/tests/test_data/gromacs_engine/project_trr/0000000.trr -> build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-05-07T02:06:29,609 copying openpathsampling/tests/test_data/gromacs_engine/project_trr/0000099.trr -> build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-05-07T02:06:29,641 copying openpathsampling/engines/external_snapshots/README.md -> build/lib/openpathsampling/engines/external_snapshots 2024-05-07T02:06:29,643 copying openpathsampling/experimental/simstore/regressions/README.md -> build/lib/openpathsampling/experimental/simstore/regressions 2024-05-07T02:06:29,694 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-07T02:06:29,695 !! 2024-05-07T02:06:29,696 ******************************************************************************** 2024-05-07T02:06:29,696 Please avoid running ``setup.py`` directly. 2024-05-07T02:06:29,697 Instead, use pypa/build, pypa/installer or other 2024-05-07T02:06:29,697 standards-based tools. 2024-05-07T02:06:29,698 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-07T02:06:29,699 ******************************************************************************** 2024-05-07T02:06:29,700 !! 2024-05-07T02:06:29,700 self.initialize_options() 2024-05-07T02:06:29,719 installing to build/bdist.linux-armv7l/wheel 2024-05-07T02:06:29,720 running install 2024-05-07T02:06:29,744 running install_lib 2024-05-07T02:06:29,768 creating build/bdist.linux-armv7l 2024-05-07T02:06:29,769 creating build/bdist.linux-armv7l/wheel 2024-05-07T02:06:29,771 creating build/bdist.linux-armv7l/wheel/examples 2024-05-07T02:06:29,772 copying build/lib/examples/prep_example_data.py -> build/bdist.linux-armv7l/wheel/examples 2024-05-07T02:06:29,775 creating build/bdist.linux-armv7l/wheel/examples/resources 2024-05-07T02:06:29,776 copying build/lib/examples/resources/toy_plot_helpers.py -> build/bdist.linux-armv7l/wheel/examples/resources 2024-05-07T02:06:29,779 creating build/bdist.linux-armv7l/wheel/examples/alanine_dipeptide_mstis 2024-05-07T02:06:29,780 copying build/lib/examples/alanine_dipeptide_mstis/alatools.py -> build/bdist.linux-armv7l/wheel/examples/alanine_dipeptide_mstis 2024-05-07T02:06:29,782 creating build/bdist.linux-armv7l/wheel/devtools 2024-05-07T02:06:29,784 creating build/bdist.linux-armv7l/wheel/devtools/ci 2024-05-07T02:06:29,785 copying build/lib/devtools/ci/push-docs-to-s3.py -> build/bdist.linux-armv7l/wheel/devtools/ci 2024-05-07T02:06:29,787 copying build/lib/devtools/setup_cfg_reqs.py -> build/bdist.linux-armv7l/wheel/devtools 2024-05-07T02:06:29,789 copying build/lib/devtools/autorelease_check.py -> build/bdist.linux-armv7l/wheel/devtools 2024-05-07T02:06:29,791 creating build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:29,793 creating build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-05-07T02:06:29,794 copying build/lib/openpathsampling/pathmovers/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-05-07T02:06:29,796 copying build/lib/openpathsampling/pathmovers/move_schemes.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-05-07T02:06:29,798 copying build/lib/openpathsampling/pathmovers/move_strategies.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-05-07T02:06:29,799 copying build/lib/openpathsampling/pathmovers/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-05-07T02:06:29,801 copying build/lib/openpathsampling/pathmovers/spring_shooting.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-05-07T02:06:29,805 creating build/bdist.linux-armv7l/wheel/openpathsampling/strategies 2024-05-07T02:06:29,806 copying build/lib/openpathsampling/strategies/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/strategies 2024-05-07T02:06:29,809 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,810 copying build/lib/openpathsampling/tests/test_pathsimulator.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,813 copying build/lib/openpathsampling/tests/test_shooting_point_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,815 copying build/lib/openpathsampling/tests/test_reactive_flux_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,818 copying build/lib/openpathsampling/tests/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,820 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/pathsimulators 2024-05-07T02:06:29,821 copying build/lib/openpathsampling/tests/pathsimulators/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/pathsimulators 2024-05-07T02:06:29,823 copying build/lib/openpathsampling/tests/pathsimulators/test_hooks.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/pathsimulators 2024-05-07T02:06:29,830 copying build/lib/openpathsampling/tests/test_ms_outer_interface.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,832 copying build/lib/openpathsampling/tests/test_helpers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,834 copying build/lib/openpathsampling/tests/test_visit_all_states.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,836 copying build/lib/openpathsampling/tests/test_spring_shooting.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,839 copying build/lib/openpathsampling/tests/test_progress.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,841 copying build/lib/openpathsampling/tests/test_plumed_wrapper.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,843 copying build/lib/openpathsampling/tests/test_storage.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,846 copying build/lib/openpathsampling/tests/test_toy_features.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,848 copying build/lib/openpathsampling/tests/test_deprecations.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,850 copying build/lib/openpathsampling/tests/test_openmm_snapshot.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,852 copying build/lib/openpathsampling/tests/test_transitions.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,855 copying build/lib/openpathsampling/tests/test_features.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,856 copying build/lib/openpathsampling/tests/test_movestrategy.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,860 copying build/lib/openpathsampling/tests/test_gromacs_engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,863 copying build/lib/openpathsampling/tests/test_shooting.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,865 copying build/lib/openpathsampling/tests/test_channel_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,868 copying build/lib/openpathsampling/tests/test_dynamicsengine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,870 copying build/lib/openpathsampling/tests/test_tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,873 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/external_engine 2024-05-07T02:06:29,874 copying build/lib/openpathsampling/tests/external_engine/Makefile -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/external_engine 2024-05-07T02:06:29,876 copying build/lib/openpathsampling/tests/external_engine/microtest.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/external_engine 2024-05-07T02:06:29,879 copying build/lib/openpathsampling/tests/external_engine/engine.c -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/external_engine 2024-05-07T02:06:29,881 copying build/lib/openpathsampling/tests/test_integration_tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,883 copying build/lib/openpathsampling/tests/test_pathmover.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,888 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis 2024-05-07T02:06:29,889 copying build/lib/openpathsampling/tests/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis 2024-05-07T02:06:29,891 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-05-07T02:06:29,892 copying build/lib/openpathsampling/tests/analysis/utils/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-05-07T02:06:29,894 copying build/lib/openpathsampling/tests/analysis/utils/test_mock_movers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-05-07T02:06:29,897 copying build/lib/openpathsampling/tests/analysis/utils/mock_movers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-05-07T02:06:29,900 copying build/lib/openpathsampling/tests/analysis/utils/fixture_classes.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-05-07T02:06:29,902 copying build/lib/openpathsampling/tests/analysis/utils/test_fixture_classes.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-05-07T02:06:29,904 copying build/lib/openpathsampling/tests/analysis/conftest.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis 2024-05-07T02:06:29,907 copying build/lib/openpathsampling/tests/test_api.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,909 copying build/lib/openpathsampling/tests/test_mdtraj_support.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,911 copying build/lib/openpathsampling/tests/test_part_in_b_tps.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,913 copying build/lib/openpathsampling/tests/test_collectivevariable.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,916 copying build/lib/openpathsampling/tests/test_histogram.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,919 copying build/lib/openpathsampling/tests/test_attribute.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,922 copying build/lib/openpathsampling/tests/test_resampling_statistics.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,924 copying build/lib/openpathsampling/tests/test_external_snapshots.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,927 copying build/lib/openpathsampling/tests/test_shared.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,930 copying build/lib/openpathsampling/tests/test_trajectory_transition_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,933 copying build/lib/openpathsampling/tests/test_pyemma_cv.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,935 copying build/lib/openpathsampling/tests/test_sample.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,938 copying build/lib/openpathsampling/tests/test_toy_dynamics.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,941 copying build/lib/openpathsampling/tests/test_snapshot.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,943 copying build/lib/openpathsampling/tests/test_openmm_tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,945 copying build/lib/openpathsampling/tests/test_interface_set.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:29,948 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data 2024-05-07T02:06:29,950 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine 2024-05-07T02:06:29,952 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-05-07T02:06:29,954 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr/0000000.trr -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-05-07T02:06:29,959 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr/0000099.trr -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-05-07T02:06:29,992 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/traj.trr -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine 2024-05-07T02:06:29,998 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/conf.gro -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine 2024-05-07T02:06:30,002 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/md.mdp -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine 2024-05-07T02:06:30,005 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/topol.top -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine 2024-05-07T02:06:30,008 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/apis 2024-05-07T02:06:30,009 copying build/lib/openpathsampling/tests/test_data/apis/ops1x0_api.txt -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/apis 2024-05-07T02:06:30,012 copying build/lib/openpathsampling/tests/test_data/tip4p_water.pdb -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data 2024-05-07T02:06:30,015 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/reduce_box_vects 2024-05-07T02:06:30,016 copying build/lib/openpathsampling/tests/test_data/reduce_box_vects/dna.trr -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/reduce_box_vects 2024-05-07T02:06:30,019 copying build/lib/openpathsampling/tests/test_data/reduce_box_vects/dna.gro -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/reduce_box_vects 2024-05-07T02:06:30,023 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/plumed_wrapper 2024-05-07T02:06:30,024 copying build/lib/openpathsampling/tests/test_data/plumed_wrapper/AD_initial_frame.pdb -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/plumed_wrapper 2024-05-07T02:06:30,030 copying build/lib/openpathsampling/tests/test_data/plumed_wrapper/AD_plumed_rmsd.pdb -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/plumed_wrapper 2024-05-07T02:06:30,032 copying build/lib/openpathsampling/tests/test_data/ala_small_traj.pdb -> build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data 2024-05-07T02:06:30,056 copying build/lib/openpathsampling/tests/test_sshooting_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,059 copying build/lib/openpathsampling/tests/.gitignore -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,061 copying build/lib/openpathsampling/tests/test_tis_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,074 copying build/lib/openpathsampling/tests/test_movescheme.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,077 copying build/lib/openpathsampling/tests/test_network.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,081 copying build/lib/openpathsampling/tests/test_lookup_function.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,084 copying build/lib/openpathsampling/tests/test_wham.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,086 copying build/lib/openpathsampling/tests/test_snapshot_modifier.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,090 copying build/lib/openpathsampling/tests/test_bias_function.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,092 copying build/lib/openpathsampling/tests/test_external_engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,095 copying build/lib/openpathsampling/tests/test_openmm_engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,098 copying build/lib/openpathsampling/tests/test_sshooting_simulator.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,100 copying build/lib/openpathsampling/tests/test_trajectory.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,103 copying build/lib/openpathsampling/tests/test_path_histogram.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,106 copying build/lib/openpathsampling/tests/test_ensemble.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,111 copying build/lib/openpathsampling/tests/test_rng.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,113 copying build/lib/openpathsampling/tests/test_range_logic.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,115 copying build/lib/openpathsampling/tests/test_netcdfplus_base.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,117 copying build/lib/openpathsampling/tests/test_volume.py -> build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-05-07T02:06:30,120 copying build/lib/openpathsampling/_installed_version.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,122 copying build/lib/openpathsampling/shooting.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,126 copying build/lib/openpathsampling/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,129 copying build/lib/openpathsampling/version.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,133 creating build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-05-07T02:06:30,135 copying build/lib/openpathsampling/pathsimulators/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-05-07T02:06:30,138 copying build/lib/openpathsampling/pathsimulators/reactive_flux.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-05-07T02:06:30,141 copying build/lib/openpathsampling/pathsimulators/path_simulator.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-05-07T02:06:30,145 copying build/lib/openpathsampling/pathsimulators/bootstrap_init_conds.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-05-07T02:06:30,148 copying build/lib/openpathsampling/pathsimulators/direct_md.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-05-07T02:06:30,152 copying build/lib/openpathsampling/pathsimulators/path_sampling.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-05-07T02:06:30,155 copying build/lib/openpathsampling/pathsimulators/sshooting_simulator.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-05-07T02:06:30,158 copying build/lib/openpathsampling/pathsimulators/shoot_snapshots.py -> build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-05-07T02:06:30,161 copying build/lib/openpathsampling/range_logic.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,164 creating build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-05-07T02:06:30,166 copying build/lib/openpathsampling/netcdfplus/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-05-07T02:06:30,168 copying build/lib/openpathsampling/netcdfplus/attribute.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-05-07T02:06:30,171 copying build/lib/openpathsampling/netcdfplus/version.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-05-07T02:06:30,174 creating build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-05-07T02:06:30,176 copying build/lib/openpathsampling/netcdfplus/stores/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-05-07T02:06:30,178 copying build/lib/openpathsampling/netcdfplus/stores/attribute.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-05-07T02:06:30,181 copying build/lib/openpathsampling/netcdfplus/stores/named.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-05-07T02:06:30,184 copying build/lib/openpathsampling/netcdfplus/stores/dict.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-05-07T02:06:30,187 copying build/lib/openpathsampling/netcdfplus/stores/object.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-05-07T02:06:30,191 copying build/lib/openpathsampling/netcdfplus/stores/indexed.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-05-07T02:06:30,193 copying build/lib/openpathsampling/netcdfplus/stores/variable.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-05-07T02:06:30,196 copying build/lib/openpathsampling/netcdfplus/stores/value.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-05-07T02:06:30,200 copying build/lib/openpathsampling/netcdfplus/netcdfplus.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-05-07T02:06:30,204 copying build/lib/openpathsampling/netcdfplus/dictify.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-05-07T02:06:30,208 copying build/lib/openpathsampling/netcdfplus/chaindict.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-05-07T02:06:30,212 copying build/lib/openpathsampling/netcdfplus/cache.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-05-07T02:06:30,215 copying build/lib/openpathsampling/netcdfplus/proxy.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-05-07T02:06:30,219 copying build/lib/openpathsampling/netcdfplus/base.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-05-07T02:06:30,222 copying build/lib/openpathsampling/netcdfplus/util.py -> build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-05-07T02:06:30,225 copying build/lib/openpathsampling/snapshot_modifier.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,228 creating build/bdist.linux-armv7l/wheel/openpathsampling/beta 2024-05-07T02:06:30,229 copying build/lib/openpathsampling/beta/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/beta 2024-05-07T02:06:30,231 copying build/lib/openpathsampling/beta/hooks.py -> build/bdist.linux-armv7l/wheel/openpathsampling/beta 2024-05-07T02:06:30,234 copying build/lib/openpathsampling/step_visualizer_2D.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,236 copying build/lib/openpathsampling/collectivevariable.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,240 copying build/lib/openpathsampling/sample.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,243 copying build/lib/openpathsampling/pathmover_inout.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,246 copying build/lib/openpathsampling/treelogic.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,249 creating build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-05-07T02:06:30,250 copying build/lib/openpathsampling/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-05-07T02:06:30,253 copying build/lib/openpathsampling/analysis/shooting_point_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-05-07T02:06:30,255 copying build/lib/openpathsampling/analysis/path_histogram.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-05-07T02:06:30,258 copying build/lib/openpathsampling/analysis/channel_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-05-07T02:06:30,261 copying build/lib/openpathsampling/analysis/ensemble_representation.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-05-07T02:06:30,263 copying build/lib/openpathsampling/analysis/replica_network.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-05-07T02:06:30,266 copying build/lib/openpathsampling/analysis/trajectory_transition_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-05-07T02:06:30,269 copying build/lib/openpathsampling/analysis/reactive_flux_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-05-07T02:06:30,271 copying build/lib/openpathsampling/analysis/tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-05-07T02:06:30,274 creating build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-05-07T02:06:30,275 copying build/lib/openpathsampling/analysis/tis/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-05-07T02:06:30,277 copying build/lib/openpathsampling/analysis/tis/misc.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-05-07T02:06:30,279 copying build/lib/openpathsampling/analysis/tis/crossing_probability.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-05-07T02:06:30,281 copying build/lib/openpathsampling/analysis/tis/core.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-05-07T02:06:30,283 copying build/lib/openpathsampling/analysis/tis/standard_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-05-07T02:06:30,286 copying build/lib/openpathsampling/analysis/tis/flux.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-05-07T02:06:30,288 copying build/lib/openpathsampling/analysis/sshooting_analysis.py -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-05-07T02:06:30,290 copying build/lib/openpathsampling/analysis/.gitignore -> build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-05-07T02:06:30,292 copying build/lib/openpathsampling/progress.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,294 copying build/lib/openpathsampling/movechange.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,297 creating build/bdist.linux-armv7l/wheel/openpathsampling/ensembles 2024-05-07T02:06:30,298 copying build/lib/openpathsampling/ensembles/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/ensembles 2024-05-07T02:06:30,300 copying build/lib/openpathsampling/ensembles/visit_all_states.py -> build/bdist.linux-armv7l/wheel/openpathsampling/ensembles 2024-05-07T02:06:30,302 copying build/lib/openpathsampling/ensembles/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling/ensembles 2024-05-07T02:06:30,304 creating build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-05-07T02:06:30,305 copying build/lib/openpathsampling/high_level/ms_outer_interface.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-05-07T02:06:30,307 copying build/lib/openpathsampling/high_level/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-05-07T02:06:30,309 copying build/lib/openpathsampling/high_level/part_in_b_tps.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-05-07T02:06:30,311 copying build/lib/openpathsampling/high_level/transition.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-05-07T02:06:30,314 copying build/lib/openpathsampling/high_level/move_strategy.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-05-07T02:06:30,317 copying build/lib/openpathsampling/high_level/move_scheme.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-05-07T02:06:30,320 copying build/lib/openpathsampling/high_level/network.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-05-07T02:06:30,323 copying build/lib/openpathsampling/high_level/interface_set.py -> build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-05-07T02:06:30,325 copying build/lib/openpathsampling/ensemble.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,329 copying build/lib/openpathsampling/tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,332 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-05-07T02:06:30,333 copying build/lib/openpathsampling/engines/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-05-07T02:06:30,336 copying build/lib/openpathsampling/engines/delayedinterrupt.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-05-07T02:06:30,338 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/gromacs 2024-05-07T02:06:30,339 copying build/lib/openpathsampling/engines/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/gromacs 2024-05-07T02:06:30,340 copying build/lib/openpathsampling/engines/gromacs/engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/gromacs 2024-05-07T02:06:30,343 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots 2024-05-07T02:06:30,344 copying build/lib/openpathsampling/engines/external_snapshots/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots 2024-05-07T02:06:30,346 copying build/lib/openpathsampling/engines/external_snapshots/snapshot.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots 2024-05-07T02:06:30,348 copying build/lib/openpathsampling/engines/external_snapshots/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots 2024-05-07T02:06:30,350 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-05-07T02:06:30,351 copying build/lib/openpathsampling/engines/external_snapshots/features/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-05-07T02:06:30,354 copying build/lib/openpathsampling/engines/external_snapshots/features/velocities.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-05-07T02:06:30,355 copying build/lib/openpathsampling/engines/external_snapshots/features/coordinates.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-05-07T02:06:30,357 copying build/lib/openpathsampling/engines/external_snapshots/features/box_vectors.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-05-07T02:06:30,359 copying build/lib/openpathsampling/engines/external_snapshots/features/file_info.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-05-07T02:06:30,361 copying build/lib/openpathsampling/engines/snapshot.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-05-07T02:06:30,363 copying build/lib/openpathsampling/engines/dynamics_engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-05-07T02:06:30,367 copying build/lib/openpathsampling/engines/topology.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-05-07T02:06:30,369 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-05-07T02:06:30,370 copying build/lib/openpathsampling/engines/toy/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-05-07T02:06:30,372 copying build/lib/openpathsampling/engines/toy/snapshot.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-05-07T02:06:30,374 copying build/lib/openpathsampling/engines/toy/engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-05-07T02:06:30,375 copying build/lib/openpathsampling/engines/toy/topology.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-05-07T02:06:30,377 copying build/lib/openpathsampling/engines/toy/pes.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-05-07T02:06:30,380 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy/features 2024-05-07T02:06:30,381 copying build/lib/openpathsampling/engines/toy/features/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy/features 2024-05-07T02:06:30,383 copying build/lib/openpathsampling/engines/toy/features/instantaneous_temperature.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy/features 2024-05-07T02:06:30,385 copying build/lib/openpathsampling/engines/toy/integrators.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-05-07T02:06:30,387 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-05-07T02:06:30,388 copying build/lib/openpathsampling/engines/openmm/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-05-07T02:06:30,390 copying build/lib/openpathsampling/engines/openmm/snapshot.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-05-07T02:06:30,392 copying build/lib/openpathsampling/engines/openmm/engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-05-07T02:06:30,394 copying build/lib/openpathsampling/engines/openmm/topology.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-05-07T02:06:30,396 copying build/lib/openpathsampling/engines/openmm/tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-05-07T02:06:30,399 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm/features 2024-05-07T02:06:30,400 copying build/lib/openpathsampling/engines/openmm/features/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm/features 2024-05-07T02:06:30,402 copying build/lib/openpathsampling/engines/openmm/features/traj_quantities.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm/features 2024-05-07T02:06:30,403 copying build/lib/openpathsampling/engines/openmm/features/instantaneous_temperature.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm/features 2024-05-07T02:06:30,405 copying build/lib/openpathsampling/engines/openmm/features/masses.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm/features 2024-05-07T02:06:30,407 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-05-07T02:06:30,408 copying build/lib/openpathsampling/engines/features/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-05-07T02:06:30,410 copying build/lib/openpathsampling/engines/features/velocities.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-05-07T02:06:30,412 copying build/lib/openpathsampling/engines/features/coordinates.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-05-07T02:06:30,414 copying build/lib/openpathsampling/engines/features/engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-05-07T02:06:30,416 copying build/lib/openpathsampling/engines/features/kinetics.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-05-07T02:06:30,418 copying build/lib/openpathsampling/engines/features/shared.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-05-07T02:06:30,421 copying build/lib/openpathsampling/engines/features/topology.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-05-07T02:06:30,423 copying build/lib/openpathsampling/engines/features/box_vectors.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-05-07T02:06:30,424 copying build/lib/openpathsampling/engines/features/statics.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-05-07T02:06:30,427 copying build/lib/openpathsampling/engines/features/base.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-05-07T02:06:30,429 copying build/lib/openpathsampling/engines/features/numpydoctools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-05-07T02:06:30,432 copying build/lib/openpathsampling/engines/trajectory.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-05-07T02:06:30,434 copying build/lib/openpathsampling/engines/external_engine.py -> build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-05-07T02:06:30,437 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental 2024-05-07T02:06:30,438 copying build/lib/openpathsampling/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental 2024-05-07T02:06:30,440 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,441 copying build/lib/openpathsampling/experimental/simstore/test_type_ident.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,443 copying build/lib/openpathsampling/experimental/simstore/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,445 copying build/lib/openpathsampling/experimental/simstore/storable_functions.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,447 copying build/lib/openpathsampling/experimental/simstore/test_storable_function_integration.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,450 copying build/lib/openpathsampling/experimental/simstore/class_lookup.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,452 copying build/lib/openpathsampling/experimental/simstore/test_serialization_helpers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,454 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore/regressions 2024-05-07T02:06:30,456 copying build/lib/openpathsampling/experimental/simstore/regressions/test_numpy_sfrs.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore/regressions 2024-05-07T02:06:30,458 copying build/lib/openpathsampling/experimental/simstore/regressions/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore/regressions 2024-05-07T02:06:30,459 copying build/lib/openpathsampling/experimental/simstore/memory_backend.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,462 copying build/lib/openpathsampling/experimental/simstore/callable_codec.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,464 copying build/lib/openpathsampling/experimental/simstore/test_storage.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,466 copying build/lib/openpathsampling/experimental/simstore/storage.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,469 copying build/lib/openpathsampling/experimental/simstore/tags_table.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,471 copying build/lib/openpathsampling/experimental/simstore/serialization_helpers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,473 copying build/lib/openpathsampling/experimental/simstore/attribute_handlers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,475 copying build/lib/openpathsampling/experimental/simstore/test_tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,477 copying build/lib/openpathsampling/experimental/simstore/uuids.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,479 copying build/lib/openpathsampling/experimental/simstore/test_storable_function.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,482 copying build/lib/openpathsampling/experimental/simstore/type_ident.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,484 copying build/lib/openpathsampling/experimental/simstore/test_utils.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,486 copying build/lib/openpathsampling/experimental/simstore/test_tags_table.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,488 copying build/lib/openpathsampling/experimental/simstore/wrapper.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,490 copying build/lib/openpathsampling/experimental/simstore/tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,492 copying build/lib/openpathsampling/experimental/simstore/class_info.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,494 copying build/lib/openpathsampling/experimental/simstore/test_class_info.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,496 copying build/lib/openpathsampling/experimental/simstore/test_dict_serialization_helpers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,498 copying build/lib/openpathsampling/experimental/simstore/sql_backend.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,501 copying build/lib/openpathsampling/experimental/simstore/proxy.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,503 copying build/lib/openpathsampling/experimental/simstore/test_custom_json.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,505 copying build/lib/openpathsampling/experimental/simstore/dict_serialization_helpers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,507 copying build/lib/openpathsampling/experimental/simstore/serialization.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,509 copying build/lib/openpathsampling/experimental/simstore/test_callable_codec.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,511 copying build/lib/openpathsampling/experimental/simstore/custom_json.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,514 copying build/lib/openpathsampling/experimental/simstore/test_attribute_handlers.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,515 copying build/lib/openpathsampling/experimental/simstore/my_types.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,517 copying build/lib/openpathsampling/experimental/simstore/test_serialization.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,519 copying build/lib/openpathsampling/experimental/simstore/test_sql_backend.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,522 copying build/lib/openpathsampling/experimental/simstore/test_backend.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,524 copying build/lib/openpathsampling/experimental/simstore/backend.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-05-07T02:06:30,525 copying build/lib/openpathsampling/experimental/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental 2024-05-07T02:06:30,528 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,529 copying build/lib/openpathsampling/experimental/storage/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,530 copying build/lib/openpathsampling/experimental/storage/ops_storage.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,533 copying build/lib/openpathsampling/experimental/storage/test_simtk_unit.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,535 copying build/lib/openpathsampling/experimental/storage/test_snapshots_table.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,537 copying build/lib/openpathsampling/experimental/storage/test_pathsampling.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,539 copying build/lib/openpathsampling/experimental/storage/test_mdtraj_json.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,541 copying build/lib/openpathsampling/experimental/storage/simtk_unit.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,543 copying build/lib/openpathsampling/experimental/storage/test_regressions.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,545 copying build/lib/openpathsampling/experimental/storage/snapshots.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,547 copying build/lib/openpathsampling/experimental/storage/test_collective_variables.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,549 copying build/lib/openpathsampling/experimental/storage/mdtraj_json.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,551 copying build/lib/openpathsampling/experimental/storage/monkey_patches.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,552 copying build/lib/openpathsampling/experimental/storage/test_snapshot_integrations.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,554 copying build/lib/openpathsampling/experimental/storage/test_monkey_patches.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,556 copying build/lib/openpathsampling/experimental/storage/test_snapshots.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,558 copying build/lib/openpathsampling/experimental/storage/snapshots_table.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,560 copying build/lib/openpathsampling/experimental/storage/collective_variables.py -> build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-05-07T02:06:30,562 copying build/lib/openpathsampling/logging.conf -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,564 copying build/lib/openpathsampling/integration_tools.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,566 copying build/lib/openpathsampling/pathmover.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,570 copying build/lib/openpathsampling/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,572 copying build/lib/openpathsampling/.gitignore -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,574 copying build/lib/openpathsampling/deprecations.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,577 creating build/bdist.linux-armv7l/wheel/openpathsampling/collectivevariables 2024-05-07T02:06:30,578 copying build/lib/openpathsampling/collectivevariables/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/collectivevariables 2024-05-07T02:06:30,580 copying build/lib/openpathsampling/collectivevariables/plumed_wrapper.py -> build/bdist.linux-armv7l/wheel/openpathsampling/collectivevariables 2024-05-07T02:06:30,582 copying build/lib/openpathsampling/collectivevariables/README.md -> build/bdist.linux-armv7l/wheel/openpathsampling/collectivevariables 2024-05-07T02:06:30,585 creating build/bdist.linux-armv7l/wheel/openpathsampling/resources 2024-05-07T02:06:30,586 copying build/lib/openpathsampling/resources/engine_debug.conf -> build/bdist.linux-armv7l/wheel/openpathsampling/resources 2024-05-07T02:06:30,588 copying build/lib/openpathsampling/resources/logging.conf -> build/bdist.linux-armv7l/wheel/openpathsampling/resources 2024-05-07T02:06:30,590 copying build/lib/openpathsampling/resources/vis.css -> build/bdist.linux-armv7l/wheel/openpathsampling/resources 2024-05-07T02:06:30,592 copying build/lib/openpathsampling/resources/debug_logging.conf -> build/bdist.linux-armv7l/wheel/openpathsampling/resources 2024-05-07T02:06:30,594 copying build/lib/openpathsampling/volume.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,596 copying build/lib/openpathsampling/rng.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,598 copying build/lib/openpathsampling/visualize.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,602 copying build/lib/openpathsampling/ops_logging.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,604 creating build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-05-07T02:06:30,605 copying build/lib/openpathsampling/numerics/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-05-07T02:06:30,607 copying build/lib/openpathsampling/numerics/resampling_statistics.py -> build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-05-07T02:06:30,609 copying build/lib/openpathsampling/numerics/wham.py -> build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-05-07T02:06:30,612 copying build/lib/openpathsampling/numerics/histogram.py -> build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-05-07T02:06:30,619 copying build/lib/openpathsampling/numerics/lookup_function.py -> build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-05-07T02:06:30,621 copying build/lib/openpathsampling/bias_function.py -> build/bdist.linux-armv7l/wheel/openpathsampling 2024-05-07T02:06:30,624 creating build/bdist.linux-armv7l/wheel/openpathsampling/storage 2024-05-07T02:06:30,625 copying build/lib/openpathsampling/storage/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage 2024-05-07T02:06:30,628 creating build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-05-07T02:06:30,629 copying build/lib/openpathsampling/storage/stores/__init__.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-05-07T02:06:30,631 copying build/lib/openpathsampling/storage/stores/snapshot_wrapper.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-05-07T02:06:30,634 copying build/lib/openpathsampling/storage/stores/snapshot_value.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-05-07T02:06:30,636 copying build/lib/openpathsampling/storage/stores/collectivevariable.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-05-07T02:06:30,638 copying build/lib/openpathsampling/storage/stores/sample.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-05-07T02:06:30,640 copying build/lib/openpathsampling/storage/stores/snapshot_base.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-05-07T02:06:30,642 copying build/lib/openpathsampling/storage/stores/movechange.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-05-07T02:06:30,644 copying build/lib/openpathsampling/storage/stores/pathsimulator.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-05-07T02:06:30,646 copying build/lib/openpathsampling/storage/stores/mcstep.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-05-07T02:06:30,648 copying build/lib/openpathsampling/storage/stores/trajectory.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-05-07T02:06:30,650 copying build/lib/openpathsampling/storage/stores/snapshot_feature.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-05-07T02:06:30,652 copying build/lib/openpathsampling/storage/storage.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage 2024-05-07T02:06:30,654 copying build/lib/openpathsampling/storage/distributed.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage 2024-05-07T02:06:30,656 copying build/lib/openpathsampling/storage/util.py -> build/bdist.linux-armv7l/wheel/openpathsampling/storage 2024-05-07T02:06:30,660 creating build/bdist.linux-armv7l/wheel/docs 2024-05-07T02:06:30,661 creating build/bdist.linux-armv7l/wheel/docs/sphinxext 2024-05-07T02:06:30,662 copying build/lib/docs/sphinxext/notebook_sphinxext.py -> build/bdist.linux-armv7l/wheel/docs/sphinxext 2024-05-07T02:06:30,664 copying build/lib/docs/sphinxext/pandoc_sphinxext.py -> build/bdist.linux-armv7l/wheel/docs/sphinxext 2024-05-07T02:06:30,667 creating build/bdist.linux-armv7l/wheel/docs/copyfiles 2024-05-07T02:06:30,668 copying build/lib/docs/copyfiles/copyfiles.py -> build/bdist.linux-armv7l/wheel/docs/copyfiles 2024-05-07T02:06:30,669 copying build/lib/docs/conf.py -> build/bdist.linux-armv7l/wheel/docs 2024-05-07T02:06:30,672 copying build/lib/docs/premake.py -> build/bdist.linux-armv7l/wheel/docs 2024-05-07T02:06:30,673 running install_egg_info 2024-05-07T02:06:30,707 Copying openpathsampling.egg-info to build/bdist.linux-armv7l/wheel/openpathsampling-1.6.1-py3.11.egg-info 2024-05-07T02:06:30,718 running install_scripts 2024-05-07T02:06:30,737 creating build/bdist.linux-armv7l/wheel/openpathsampling-1.6.1.dist-info/WHEEL 2024-05-07T02:06:30,740 creating '/tmp/pip-wheel-ybxjtqqn/openpathsampling-1.6.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-07T02:06:30,742 adding 'devtools/autorelease_check.py' 2024-05-07T02:06:30,743 adding 'devtools/setup_cfg_reqs.py' 2024-05-07T02:06:30,745 adding 'devtools/ci/push-docs-to-s3.py' 2024-05-07T02:06:30,748 adding 'docs/conf.py' 2024-05-07T02:06:30,749 adding 'docs/premake.py' 2024-05-07T02:06:30,751 adding 'docs/copyfiles/copyfiles.py' 2024-05-07T02:06:30,753 adding 'docs/sphinxext/notebook_sphinxext.py' 2024-05-07T02:06:30,755 adding 'docs/sphinxext/pandoc_sphinxext.py' 2024-05-07T02:06:30,757 adding 'examples/prep_example_data.py' 2024-05-07T02:06:30,759 adding 'examples/alanine_dipeptide_mstis/alatools.py' 2024-05-07T02:06:30,761 adding 'examples/resources/toy_plot_helpers.py' 2024-05-07T02:06:30,764 adding 'openpathsampling/.gitignore' 2024-05-07T02:06:30,765 adding 'openpathsampling/README.md' 2024-05-07T02:06:30,767 adding 'openpathsampling/__init__.py' 2024-05-07T02:06:30,768 adding 'openpathsampling/_installed_version.py' 2024-05-07T02:06:30,770 adding 'openpathsampling/bias_function.py' 2024-05-07T02:06:30,773 adding 'openpathsampling/collectivevariable.py' 2024-05-07T02:06:30,775 adding 'openpathsampling/deprecations.py' 2024-05-07T02:06:30,787 adding 'openpathsampling/ensemble.py' 2024-05-07T02:06:30,791 adding 'openpathsampling/integration_tools.py' 2024-05-07T02:06:30,792 adding 'openpathsampling/logging.conf' 2024-05-07T02:06:30,795 adding 'openpathsampling/movechange.py' 2024-05-07T02:06:30,796 adding 'openpathsampling/ops_logging.py' 2024-05-07T02:06:30,805 adding 'openpathsampling/pathmover.py' 2024-05-07T02:06:30,808 adding 'openpathsampling/pathmover_inout.py' 2024-05-07T02:06:30,810 adding 'openpathsampling/progress.py' 2024-05-07T02:06:30,812 adding 'openpathsampling/range_logic.py' 2024-05-07T02:06:30,813 adding 'openpathsampling/rng.py' 2024-05-07T02:06:30,817 adding 'openpathsampling/sample.py' 2024-05-07T02:06:30,819 adding 'openpathsampling/shooting.py' 2024-05-07T02:06:30,822 adding 'openpathsampling/snapshot_modifier.py' 2024-05-07T02:06:30,823 adding 'openpathsampling/step_visualizer_2D.py' 2024-05-07T02:06:30,825 adding 'openpathsampling/tools.py' 2024-05-07T02:06:30,827 adding 'openpathsampling/treelogic.py' 2024-05-07T02:06:30,829 adding 'openpathsampling/version.py' 2024-05-07T02:06:30,838 adding 'openpathsampling/visualize.py' 2024-05-07T02:06:30,841 adding 'openpathsampling/volume.py' 2024-05-07T02:06:30,843 adding 'openpathsampling/analysis/.gitignore' 2024-05-07T02:06:30,845 adding 'openpathsampling/analysis/__init__.py' 2024-05-07T02:06:30,847 adding 'openpathsampling/analysis/channel_analysis.py' 2024-05-07T02:06:30,848 adding 'openpathsampling/analysis/ensemble_representation.py' 2024-05-07T02:06:30,851 adding 'openpathsampling/analysis/path_histogram.py' 2024-05-07T02:06:30,852 adding 'openpathsampling/analysis/reactive_flux_analysis.py' 2024-05-07T02:06:30,855 adding 'openpathsampling/analysis/replica_network.py' 2024-05-07T02:06:30,857 adding 'openpathsampling/analysis/shooting_point_analysis.py' 2024-05-07T02:06:30,859 adding 'openpathsampling/analysis/sshooting_analysis.py' 2024-05-07T02:06:30,860 adding 'openpathsampling/analysis/tools.py' 2024-05-07T02:06:30,863 adding 'openpathsampling/analysis/trajectory_transition_analysis.py' 2024-05-07T02:06:30,864 adding 'openpathsampling/analysis/tis/__init__.py' 2024-05-07T02:06:30,867 adding 'openpathsampling/analysis/tis/core.py' 2024-05-07T02:06:30,868 adding 'openpathsampling/analysis/tis/crossing_probability.py' 2024-05-07T02:06:30,870 adding 'openpathsampling/analysis/tis/flux.py' 2024-05-07T02:06:30,872 adding 'openpathsampling/analysis/tis/misc.py' 2024-05-07T02:06:30,874 adding 'openpathsampling/analysis/tis/standard_analysis.py' 2024-05-07T02:06:30,875 adding 'openpathsampling/beta/__init__.py' 2024-05-07T02:06:30,878 adding 'openpathsampling/beta/hooks.py' 2024-05-07T02:06:30,879 adding 'openpathsampling/collectivevariables/README.md' 2024-05-07T02:06:30,880 adding 'openpathsampling/collectivevariables/__init__.py' 2024-05-07T02:06:30,882 adding 'openpathsampling/collectivevariables/plumed_wrapper.py' 2024-05-07T02:06:30,884 adding 'openpathsampling/engines/__init__.py' 2024-05-07T02:06:30,885 adding 'openpathsampling/engines/delayedinterrupt.py' 2024-05-07T02:06:30,889 adding 'openpathsampling/engines/dynamics_engine.py' 2024-05-07T02:06:30,891 adding 'openpathsampling/engines/external_engine.py' 2024-05-07T02:06:30,893 adding 'openpathsampling/engines/snapshot.py' 2024-05-07T02:06:30,894 adding 'openpathsampling/engines/topology.py' 2024-05-07T02:06:30,897 adding 'openpathsampling/engines/trajectory.py' 2024-05-07T02:06:30,898 adding 'openpathsampling/engines/external_snapshots/README.md' 2024-05-07T02:06:30,899 adding 'openpathsampling/engines/external_snapshots/__init__.py' 2024-05-07T02:06:30,901 adding 'openpathsampling/engines/external_snapshots/snapshot.py' 2024-05-07T02:06:30,903 adding 'openpathsampling/engines/external_snapshots/features/__init__.py' 2024-05-07T02:06:30,904 adding 'openpathsampling/engines/external_snapshots/features/box_vectors.py' 2024-05-07T02:06:30,905 adding 'openpathsampling/engines/external_snapshots/features/coordinates.py' 2024-05-07T02:06:30,906 adding 'openpathsampling/engines/external_snapshots/features/file_info.py' 2024-05-07T02:06:30,907 adding 'openpathsampling/engines/external_snapshots/features/velocities.py' 2024-05-07T02:06:30,909 adding 'openpathsampling/engines/features/__init__.py' 2024-05-07T02:06:30,912 adding 'openpathsampling/engines/features/base.py' 2024-05-07T02:06:30,914 adding 'openpathsampling/engines/features/box_vectors.py' 2024-05-07T02:06:30,915 adding 'openpathsampling/engines/features/coordinates.py' 2024-05-07T02:06:30,916 adding 'openpathsampling/engines/features/engine.py' 2024-05-07T02:06:30,917 adding 'openpathsampling/engines/features/kinetics.py' 2024-05-07T02:06:30,919 adding 'openpathsampling/engines/features/numpydoctools.py' 2024-05-07T02:06:30,921 adding 'openpathsampling/engines/features/shared.py' 2024-05-07T02:06:30,922 adding 'openpathsampling/engines/features/statics.py' 2024-05-07T02:06:30,923 adding 'openpathsampling/engines/features/topology.py' 2024-05-07T02:06:30,925 adding 'openpathsampling/engines/features/velocities.py' 2024-05-07T02:06:30,926 adding 'openpathsampling/engines/gromacs/__init__.py' 2024-05-07T02:06:30,929 adding 'openpathsampling/engines/gromacs/engine.py' 2024-05-07T02:06:30,930 adding 'openpathsampling/engines/openmm/__init__.py' 2024-05-07T02:06:30,933 adding 'openpathsampling/engines/openmm/engine.py' 2024-05-07T02:06:30,934 adding 'openpathsampling/engines/openmm/snapshot.py' 2024-05-07T02:06:30,937 adding 'openpathsampling/engines/openmm/tools.py' 2024-05-07T02:06:30,938 adding 'openpathsampling/engines/openmm/topology.py' 2024-05-07T02:06:30,940 adding 'openpathsampling/engines/openmm/features/__init__.py' 2024-05-07T02:06:30,941 adding 'openpathsampling/engines/openmm/features/instantaneous_temperature.py' 2024-05-07T02:06:30,942 adding 'openpathsampling/engines/openmm/features/masses.py' 2024-05-07T02:06:30,943 adding 'openpathsampling/engines/openmm/features/traj_quantities.py' 2024-05-07T02:06:30,945 adding 'openpathsampling/engines/toy/__init__.py' 2024-05-07T02:06:30,947 adding 'openpathsampling/engines/toy/engine.py' 2024-05-07T02:06:30,948 adding 'openpathsampling/engines/toy/integrators.py' 2024-05-07T02:06:30,950 adding 'openpathsampling/engines/toy/pes.py' 2024-05-07T02:06:30,951 adding 'openpathsampling/engines/toy/snapshot.py' 2024-05-07T02:06:30,952 adding 'openpathsampling/engines/toy/topology.py' 2024-05-07T02:06:30,954 adding 'openpathsampling/engines/toy/features/__init__.py' 2024-05-07T02:06:30,955 adding 'openpathsampling/engines/toy/features/instantaneous_temperature.py' 2024-05-07T02:06:30,956 adding 'openpathsampling/ensembles/README.md' 2024-05-07T02:06:30,957 adding 'openpathsampling/ensembles/__init__.py' 2024-05-07T02:06:30,959 adding 'openpathsampling/ensembles/visit_all_states.py' 2024-05-07T02:06:30,961 adding 'openpathsampling/experimental/README.md' 2024-05-07T02:06:30,962 adding 'openpathsampling/experimental/__init__.py' 2024-05-07T02:06:30,964 adding 'openpathsampling/experimental/simstore/__init__.py' 2024-05-07T02:06:30,966 adding 'openpathsampling/experimental/simstore/attribute_handlers.py' 2024-05-07T02:06:30,967 adding 'openpathsampling/experimental/simstore/backend.py' 2024-05-07T02:06:30,969 adding 'openpathsampling/experimental/simstore/callable_codec.py' 2024-05-07T02:06:30,971 adding 'openpathsampling/experimental/simstore/class_info.py' 2024-05-07T02:06:30,972 adding 'openpathsampling/experimental/simstore/class_lookup.py' 2024-05-07T02:06:30,975 adding 'openpathsampling/experimental/simstore/custom_json.py' 2024-05-07T02:06:30,976 adding 'openpathsampling/experimental/simstore/dict_serialization_helpers.py' 2024-05-07T02:06:30,978 adding 'openpathsampling/experimental/simstore/memory_backend.py' 2024-05-07T02:06:30,979 adding 'openpathsampling/experimental/simstore/my_types.py' 2024-05-07T02:06:30,980 adding 'openpathsampling/experimental/simstore/proxy.py' 2024-05-07T02:06:30,982 adding 'openpathsampling/experimental/simstore/serialization.py' 2024-05-07T02:06:30,985 adding 'openpathsampling/experimental/simstore/serialization_helpers.py' 2024-05-07T02:06:30,988 adding 'openpathsampling/experimental/simstore/sql_backend.py' 2024-05-07T02:06:30,991 adding 'openpathsampling/experimental/simstore/storable_functions.py' 2024-05-07T02:06:30,995 adding 'openpathsampling/experimental/simstore/storage.py' 2024-05-07T02:06:30,997 adding 'openpathsampling/experimental/simstore/tags_table.py' 2024-05-07T02:06:30,998 adding 'openpathsampling/experimental/simstore/test_attribute_handlers.py' 2024-05-07T02:06:31,000 adding 'openpathsampling/experimental/simstore/test_backend.py' 2024-05-07T02:06:31,001 adding 'openpathsampling/experimental/simstore/test_callable_codec.py' 2024-05-07T02:06:31,003 adding 'openpathsampling/experimental/simstore/test_class_info.py' 2024-05-07T02:06:31,005 adding 'openpathsampling/experimental/simstore/test_custom_json.py' 2024-05-07T02:06:31,007 adding 'openpathsampling/experimental/simstore/test_dict_serialization_helpers.py' 2024-05-07T02:06:31,008 adding 'openpathsampling/experimental/simstore/test_serialization.py' 2024-05-07T02:06:31,010 adding 'openpathsampling/experimental/simstore/test_serialization_helpers.py' 2024-05-07T02:06:31,012 adding 'openpathsampling/experimental/simstore/test_sql_backend.py' 2024-05-07T02:06:31,015 adding 'openpathsampling/experimental/simstore/test_storable_function.py' 2024-05-07T02:06:31,017 adding 'openpathsampling/experimental/simstore/test_storable_function_integration.py' 2024-05-07T02:06:31,018 adding 'openpathsampling/experimental/simstore/test_storage.py' 2024-05-07T02:06:31,020 adding 'openpathsampling/experimental/simstore/test_tags_table.py' 2024-05-07T02:06:31,021 adding 'openpathsampling/experimental/simstore/test_tools.py' 2024-05-07T02:06:31,022 adding 'openpathsampling/experimental/simstore/test_type_ident.py' 2024-05-07T02:06:31,024 adding 'openpathsampling/experimental/simstore/test_utils.py' 2024-05-07T02:06:31,025 adding 'openpathsampling/experimental/simstore/tools.py' 2024-05-07T02:06:31,027 adding 'openpathsampling/experimental/simstore/type_ident.py' 2024-05-07T02:06:31,028 adding 'openpathsampling/experimental/simstore/uuids.py' 2024-05-07T02:06:31,029 adding 'openpathsampling/experimental/simstore/wrapper.py' 2024-05-07T02:06:31,031 adding 'openpathsampling/experimental/simstore/regressions/README.md' 2024-05-07T02:06:31,032 adding 'openpathsampling/experimental/simstore/regressions/test_numpy_sfrs.py' 2024-05-07T02:06:31,034 adding 'openpathsampling/experimental/storage/__init__.py' 2024-05-07T02:06:31,035 adding 'openpathsampling/experimental/storage/collective_variables.py' 2024-05-07T02:06:31,037 adding 'openpathsampling/experimental/storage/mdtraj_json.py' 2024-05-07T02:06:31,038 adding 'openpathsampling/experimental/storage/monkey_patches.py' 2024-05-07T02:06:31,040 adding 'openpathsampling/experimental/storage/ops_storage.py' 2024-05-07T02:06:31,042 adding 'openpathsampling/experimental/storage/simtk_unit.py' 2024-05-07T02:06:31,044 adding 'openpathsampling/experimental/storage/snapshots.py' 2024-05-07T02:06:31,045 adding 'openpathsampling/experimental/storage/snapshots_table.py' 2024-05-07T02:06:31,047 adding 'openpathsampling/experimental/storage/test_collective_variables.py' 2024-05-07T02:06:31,048 adding 'openpathsampling/experimental/storage/test_mdtraj_json.py' 2024-05-07T02:06:31,049 adding 'openpathsampling/experimental/storage/test_monkey_patches.py' 2024-05-07T02:06:31,051 adding 'openpathsampling/experimental/storage/test_pathsampling.py' 2024-05-07T02:06:31,052 adding 'openpathsampling/experimental/storage/test_regressions.py' 2024-05-07T02:06:31,053 adding 'openpathsampling/experimental/storage/test_simtk_unit.py' 2024-05-07T02:06:31,055 adding 'openpathsampling/experimental/storage/test_snapshot_integrations.py' 2024-05-07T02:06:31,056 adding 'openpathsampling/experimental/storage/test_snapshots.py' 2024-05-07T02:06:31,057 adding 'openpathsampling/experimental/storage/test_snapshots_table.py' 2024-05-07T02:06:31,059 adding 'openpathsampling/high_level/__init__.py' 2024-05-07T02:06:31,061 adding 'openpathsampling/high_level/interface_set.py' 2024-05-07T02:06:31,066 adding 'openpathsampling/high_level/move_scheme.py' 2024-05-07T02:06:31,072 adding 'openpathsampling/high_level/move_strategy.py' 2024-05-07T02:06:31,073 adding 'openpathsampling/high_level/ms_outer_interface.py' 2024-05-07T02:06:31,078 adding 'openpathsampling/high_level/network.py' 2024-05-07T02:06:31,080 adding 'openpathsampling/high_level/part_in_b_tps.py' 2024-05-07T02:06:31,083 adding 'openpathsampling/high_level/transition.py' 2024-05-07T02:06:31,085 adding 'openpathsampling/netcdfplus/__init__.py' 2024-05-07T02:06:31,088 adding 'openpathsampling/netcdfplus/attribute.py' 2024-05-07T02:06:31,090 adding 'openpathsampling/netcdfplus/base.py' 2024-05-07T02:06:31,092 adding 'openpathsampling/netcdfplus/cache.py' 2024-05-07T02:06:31,094 adding 'openpathsampling/netcdfplus/chaindict.py' 2024-05-07T02:06:31,097 adding 'openpathsampling/netcdfplus/dictify.py' 2024-05-07T02:06:31,103 adding 'openpathsampling/netcdfplus/netcdfplus.py' 2024-05-07T02:06:31,105 adding 'openpathsampling/netcdfplus/proxy.py' 2024-05-07T02:06:31,106 adding 'openpathsampling/netcdfplus/util.py' 2024-05-07T02:06:31,107 adding 'openpathsampling/netcdfplus/version.py' 2024-05-07T02:06:31,109 adding 'openpathsampling/netcdfplus/stores/__init__.py' 2024-05-07T02:06:31,110 adding 'openpathsampling/netcdfplus/stores/attribute.py' 2024-05-07T02:06:31,112 adding 'openpathsampling/netcdfplus/stores/dict.py' 2024-05-07T02:06:31,113 adding 'openpathsampling/netcdfplus/stores/indexed.py' 2024-05-07T02:06:31,116 adding 'openpathsampling/netcdfplus/stores/named.py' 2024-05-07T02:06:31,120 adding 'openpathsampling/netcdfplus/stores/object.py' 2024-05-07T02:06:31,122 adding 'openpathsampling/netcdfplus/stores/value.py' 2024-05-07T02:06:31,124 adding 'openpathsampling/netcdfplus/stores/variable.py' 2024-05-07T02:06:31,126 adding 'openpathsampling/numerics/__init__.py' 2024-05-07T02:06:31,129 adding 'openpathsampling/numerics/histogram.py' 2024-05-07T02:06:31,132 adding 'openpathsampling/numerics/lookup_function.py' 2024-05-07T02:06:31,133 adding 'openpathsampling/numerics/resampling_statistics.py' 2024-05-07T02:06:31,136 adding 'openpathsampling/numerics/wham.py' 2024-05-07T02:06:31,138 adding 'openpathsampling/pathmovers/README.md' 2024-05-07T02:06:31,139 adding 'openpathsampling/pathmovers/__init__.py' 2024-05-07T02:06:31,140 adding 'openpathsampling/pathmovers/move_schemes.py' 2024-05-07T02:06:31,141 adding 'openpathsampling/pathmovers/move_strategies.py' 2024-05-07T02:06:31,144 adding 'openpathsampling/pathmovers/spring_shooting.py' 2024-05-07T02:06:31,146 adding 'openpathsampling/pathsimulators/__init__.py' 2024-05-07T02:06:31,148 adding 'openpathsampling/pathsimulators/bootstrap_init_conds.py' 2024-05-07T02:06:31,149 adding 'openpathsampling/pathsimulators/direct_md.py' 2024-05-07T02:06:31,152 adding 'openpathsampling/pathsimulators/path_sampling.py' 2024-05-07T02:06:31,153 adding 'openpathsampling/pathsimulators/path_simulator.py' 2024-05-07T02:06:31,155 adding 'openpathsampling/pathsimulators/reactive_flux.py' 2024-05-07T02:06:31,157 adding 'openpathsampling/pathsimulators/shoot_snapshots.py' 2024-05-07T02:06:31,159 adding 'openpathsampling/pathsimulators/sshooting_simulator.py' 2024-05-07T02:06:31,161 adding 'openpathsampling/resources/debug_logging.conf' 2024-05-07T02:06:31,162 adding 'openpathsampling/resources/engine_debug.conf' 2024-05-07T02:06:31,164 adding 'openpathsampling/resources/logging.conf' 2024-05-07T02:06:31,165 adding 'openpathsampling/resources/vis.css' 2024-05-07T02:06:31,167 adding 'openpathsampling/storage/__init__.py' 2024-05-07T02:06:31,168 adding 'openpathsampling/storage/distributed.py' 2024-05-07T02:06:31,170 adding 'openpathsampling/storage/storage.py' 2024-05-07T02:06:31,172 adding 'openpathsampling/storage/util.py' 2024-05-07T02:06:31,174 adding 'openpathsampling/storage/stores/__init__.py' 2024-05-07T02:06:31,175 adding 'openpathsampling/storage/stores/collectivevariable.py' 2024-05-07T02:06:31,176 adding 'openpathsampling/storage/stores/mcstep.py' 2024-05-07T02:06:31,178 adding 'openpathsampling/storage/stores/movechange.py' 2024-05-07T02:06:31,179 adding 'openpathsampling/storage/stores/pathsimulator.py' 2024-05-07T02:06:31,180 adding 'openpathsampling/storage/stores/sample.py' 2024-05-07T02:06:31,182 adding 'openpathsampling/storage/stores/snapshot_base.py' 2024-05-07T02:06:31,183 adding 'openpathsampling/storage/stores/snapshot_feature.py' 2024-05-07T02:06:31,184 adding 'openpathsampling/storage/stores/snapshot_value.py' 2024-05-07T02:06:31,187 adding 'openpathsampling/storage/stores/snapshot_wrapper.py' 2024-05-07T02:06:31,189 adding 'openpathsampling/storage/stores/trajectory.py' 2024-05-07T02:06:31,190 adding 'openpathsampling/strategies/__init__.py' 2024-05-07T02:06:31,193 adding 'openpathsampling/tests/.gitignore' 2024-05-07T02:06:31,194 adding 'openpathsampling/tests/__init__.py' 2024-05-07T02:06:31,195 adding 'openpathsampling/tests/test_api.py' 2024-05-07T02:06:31,197 adding 'openpathsampling/tests/test_attribute.py' 2024-05-07T02:06:31,199 adding 'openpathsampling/tests/test_bias_function.py' 2024-05-07T02:06:31,201 adding 'openpathsampling/tests/test_channel_analysis.py' 2024-05-07T02:06:31,203 adding 'openpathsampling/tests/test_collectivevariable.py' 2024-05-07T02:06:31,205 adding 'openpathsampling/tests/test_deprecations.py' 2024-05-07T02:06:31,206 adding 'openpathsampling/tests/test_dynamicsengine.py' 2024-05-07T02:06:31,213 adding 'openpathsampling/tests/test_ensemble.py' 2024-05-07T02:06:31,216 adding 'openpathsampling/tests/test_external_engine.py' 2024-05-07T02:06:31,218 adding 'openpathsampling/tests/test_external_snapshots.py' 2024-05-07T02:06:31,219 adding 'openpathsampling/tests/test_features.py' 2024-05-07T02:06:31,221 adding 'openpathsampling/tests/test_gromacs_engine.py' 2024-05-07T02:06:31,223 adding 'openpathsampling/tests/test_helpers.py' 2024-05-07T02:06:31,225 adding 'openpathsampling/tests/test_histogram.py' 2024-05-07T02:06:31,226 adding 'openpathsampling/tests/test_integration_tools.py' 2024-05-07T02:06:31,228 adding 'openpathsampling/tests/test_interface_set.py' 2024-05-07T02:06:31,229 adding 'openpathsampling/tests/test_lookup_function.py' 2024-05-07T02:06:31,231 adding 'openpathsampling/tests/test_mdtraj_support.py' 2024-05-07T02:06:31,235 adding 'openpathsampling/tests/test_movescheme.py' 2024-05-07T02:06:31,240 adding 'openpathsampling/tests/test_movestrategy.py' 2024-05-07T02:06:31,242 adding 'openpathsampling/tests/test_ms_outer_interface.py' 2024-05-07T02:06:31,243 adding 'openpathsampling/tests/test_netcdfplus_base.py' 2024-05-07T02:06:31,245 adding 'openpathsampling/tests/test_network.py' 2024-05-07T02:06:31,247 adding 'openpathsampling/tests/test_openmm_engine.py' 2024-05-07T02:06:31,249 adding 'openpathsampling/tests/test_openmm_snapshot.py' 2024-05-07T02:06:31,250 adding 'openpathsampling/tests/test_openmm_tools.py' 2024-05-07T02:06:31,252 adding 'openpathsampling/tests/test_part_in_b_tps.py' 2024-05-07T02:06:31,253 adding 'openpathsampling/tests/test_path_histogram.py' 2024-05-07T02:06:31,259 adding 'openpathsampling/tests/test_pathmover.py' 2024-05-07T02:06:31,263 adding 'openpathsampling/tests/test_pathsimulator.py' 2024-05-07T02:06:31,265 adding 'openpathsampling/tests/test_plumed_wrapper.py' 2024-05-07T02:06:31,266 adding 'openpathsampling/tests/test_progress.py' 2024-05-07T02:06:31,267 adding 'openpathsampling/tests/test_pyemma_cv.py' 2024-05-07T02:06:31,269 adding 'openpathsampling/tests/test_range_logic.py' 2024-05-07T02:06:31,270 adding 'openpathsampling/tests/test_reactive_flux_analysis.py' 2024-05-07T02:06:31,272 adding 'openpathsampling/tests/test_resampling_statistics.py' 2024-05-07T02:06:31,273 adding 'openpathsampling/tests/test_rng.py' 2024-05-07T02:06:31,275 adding 'openpathsampling/tests/test_sample.py' 2024-05-07T02:06:31,276 adding 'openpathsampling/tests/test_shared.py' 2024-05-07T02:06:31,278 adding 'openpathsampling/tests/test_shooting.py' 2024-05-07T02:06:31,279 adding 'openpathsampling/tests/test_shooting_point_analysis.py' 2024-05-07T02:06:31,281 adding 'openpathsampling/tests/test_snapshot.py' 2024-05-07T02:06:31,284 adding 'openpathsampling/tests/test_snapshot_modifier.py' 2024-05-07T02:06:31,286 adding 'openpathsampling/tests/test_spring_shooting.py' 2024-05-07T02:06:31,288 adding 'openpathsampling/tests/test_sshooting_analysis.py' 2024-05-07T02:06:31,289 adding 'openpathsampling/tests/test_sshooting_simulator.py' 2024-05-07T02:06:31,291 adding 'openpathsampling/tests/test_storage.py' 2024-05-07T02:06:31,296 adding 'openpathsampling/tests/test_tis_analysis.py' 2024-05-07T02:06:31,298 adding 'openpathsampling/tests/test_tools.py' 2024-05-07T02:06:31,300 adding 'openpathsampling/tests/test_toy_dynamics.py' 2024-05-07T02:06:31,301 adding 'openpathsampling/tests/test_toy_features.py' 2024-05-07T02:06:31,302 adding 'openpathsampling/tests/test_trajectory.py' 2024-05-07T02:06:31,304 adding 'openpathsampling/tests/test_trajectory_transition_analysis.py' 2024-05-07T02:06:31,306 adding 'openpathsampling/tests/test_transitions.py' 2024-05-07T02:06:31,308 adding 'openpathsampling/tests/test_visit_all_states.py' 2024-05-07T02:06:31,310 adding 'openpathsampling/tests/test_volume.py' 2024-05-07T02:06:31,311 adding 'openpathsampling/tests/test_wham.py' 2024-05-07T02:06:31,313 adding 'openpathsampling/tests/analysis/__init__.py' 2024-05-07T02:06:31,314 adding 'openpathsampling/tests/analysis/conftest.py' 2024-05-07T02:06:31,316 adding 'openpathsampling/tests/analysis/utils/__init__.py' 2024-05-07T02:06:31,317 adding 'openpathsampling/tests/analysis/utils/fixture_classes.py' 2024-05-07T02:06:31,319 adding 'openpathsampling/tests/analysis/utils/mock_movers.py' 2024-05-07T02:06:31,321 adding 'openpathsampling/tests/analysis/utils/test_fixture_classes.py' 2024-05-07T02:06:31,322 adding 'openpathsampling/tests/analysis/utils/test_mock_movers.py' 2024-05-07T02:06:31,324 adding 'openpathsampling/tests/external_engine/Makefile' 2024-05-07T02:06:31,325 adding 'openpathsampling/tests/external_engine/engine.c' 2024-05-07T02:06:31,326 adding 'openpathsampling/tests/external_engine/microtest.py' 2024-05-07T02:06:31,328 adding 'openpathsampling/tests/pathsimulators/__init__.py' 2024-05-07T02:06:31,330 adding 'openpathsampling/tests/pathsimulators/test_hooks.py' 2024-05-07T02:06:31,531 adding 'openpathsampling/tests/test_data/ala_small_traj.pdb' 2024-05-07T02:06:31,541 adding 'openpathsampling/tests/test_data/tip4p_water.pdb' 2024-05-07T02:06:31,543 adding 'openpathsampling/tests/test_data/apis/ops1x0_api.txt' 2024-05-07T02:06:31,559 adding 'openpathsampling/tests/test_data/gromacs_engine/conf.gro' 2024-05-07T02:06:31,561 adding 'openpathsampling/tests/test_data/gromacs_engine/md.mdp' 2024-05-07T02:06:31,563 adding 'openpathsampling/tests/test_data/gromacs_engine/topol.top' 2024-05-07T02:06:31,585 adding 'openpathsampling/tests/test_data/gromacs_engine/traj.trr' 2024-05-07T02:06:31,609 adding 'openpathsampling/tests/test_data/gromacs_engine/project_trr/0000000.trr' 2024-05-07T02:06:31,916 adding 'openpathsampling/tests/test_data/gromacs_engine/project_trr/0000099.trr' 2024-05-07T02:06:31,947 adding 'openpathsampling/tests/test_data/plumed_wrapper/AD_initial_frame.pdb' 2024-05-07T02:06:31,949 adding 'openpathsampling/tests/test_data/plumed_wrapper/AD_plumed_rmsd.pdb' 2024-05-07T02:06:31,958 adding 'openpathsampling/tests/test_data/reduce_box_vects/dna.gro' 2024-05-07T02:06:31,963 adding 'openpathsampling/tests/test_data/reduce_box_vects/dna.trr' 2024-05-07T02:06:31,965 adding 'openpathsampling-1.6.1.dist-info/LICENSE' 2024-05-07T02:06:31,966 adding 'openpathsampling-1.6.1.dist-info/METADATA' 2024-05-07T02:06:31,967 adding 'openpathsampling-1.6.1.dist-info/WHEEL' 2024-05-07T02:06:31,968 adding 'openpathsampling-1.6.1.dist-info/top_level.txt' 2024-05-07T02:06:31,973 adding 'openpathsampling-1.6.1.dist-info/RECORD' 2024-05-07T02:06:32,011 removing build/bdist.linux-armv7l/wheel 2024-05-07T02:06:32,227 Building wheel for openpathsampling (setup.py): finished with status 'done' 2024-05-07T02:06:32,263 Created wheel for openpathsampling: filename=openpathsampling-1.6.1-py3-none-any.whl size=3206465 sha256=d5595755d573651ea04fd2443e048c908c7b322aef3f11744e738be32a75f201 2024-05-07T02:06:32,265 Stored in directory: /tmp/pip-ephem-wheel-cache-0qcjyr28/wheels/1a/d2/f1/be08585ab4145e598b04bb258409ace15b9340d8cce08dd928 2024-05-07T02:06:32,287 Successfully built openpathsampling 2024-05-07T02:06:32,362 Removed build tracker: '/tmp/pip-build-tracker-kttqnrwq'