2024-05-07T07:37:21,035 Created temporary directory: /tmp/pip-build-tracker-6aw50bu9
2024-05-07T07:37:21,036 Initialized build tracking at /tmp/pip-build-tracker-6aw50bu9
2024-05-07T07:37:21,037 Created build tracker: /tmp/pip-build-tracker-6aw50bu9
2024-05-07T07:37:21,037 Entered build tracker: /tmp/pip-build-tracker-6aw50bu9
2024-05-07T07:37:21,038 Created temporary directory: /tmp/pip-wheel-r1bpc73k
2024-05-07T07:37:21,041 Created temporary directory: /tmp/pip-ephem-wheel-cache-z7jxysv3
2024-05-07T07:37:21,063 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-07T07:37:21,067 2 location(s) to search for versions of historydag:
2024-05-07T07:37:21,067 * https://pypi.org/simple/historydag/
2024-05-07T07:37:21,067 * https://www.piwheels.org/simple/historydag/
2024-05-07T07:37:21,068 Fetching project page and analyzing links: https://pypi.org/simple/historydag/
2024-05-07T07:37:21,068 Getting page https://pypi.org/simple/historydag/
2024-05-07T07:37:21,070 Found index url https://pypi.org/simple/
2024-05-07T07:37:21,331 Fetched page https://pypi.org/simple/historydag/ as application/vnd.pypi.simple.v1+json
2024-05-07T07:37:21,334   Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/31/11/04b02eafa05e823bc769ac8e77f076a5334c840f4a0e5d8a64a02298e6a4/historydag-0.1-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,335   Found link https://files.pythonhosted.org/packages/3a/d6/f1c6c789a7196606d3079cb7bce124b5e79c5c49b258e611aaffb991865e/historydag-0.1.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 0.1
2024-05-07T07:37:21,336   Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/fe/94/a5e88ca3c08afc8ee6ee57593f8297e07b730a2e464d5fc972f8a003ccd6/historydag-0.1.2-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,337   Found link https://files.pythonhosted.org/packages/a3/bd/a6a86b643e1109cb75790b06ec6c6f19bd32ea71e375e86fd3c113177720/historydag-0.1.2.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 0.1.2
2024-05-07T07:37:21,338   Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/10/fc/b73bc070576eb10e1178badac9214641e216c5032dc0d5b9f11a51920851/historydag-0.1.3-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,339   Found link https://files.pythonhosted.org/packages/2a/94/551af6c61b2294ff431081146ea313062d23c1462c4e359605649d5930b8/historydag-0.1.3.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 0.1.3
2024-05-07T07:37:21,339   Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/f1/b4/857903633ad08fa67821b139ae6b43d383ce5279d7a6dac125e73b50ea13/historydag-1.0.0-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,340   Found link https://files.pythonhosted.org/packages/ec/15/9f966df549b9a4da43e4666061fda2aaa263aa90e47def241032cded52e3/historydag-1.0.0.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 1.0.0
2024-05-07T07:37:21,341   Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/0f/10/07e579db93b997750761c2083aa3dcdca6cb57b3e168446b1b3059a054d2/historydag-1.0.1-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,342   Found link https://files.pythonhosted.org/packages/1f/24/7f2e2300e451f53d0b2f1f3aca6346bcc3eb408bbf60e29e26ecb94627bd/historydag-1.0.1.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 1.0.1
2024-05-07T07:37:21,343   Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/f5/5f/a163812faf510a73295d1bf6e091abe06025fe8f2dcc56ac2bde29fa8562/historydag-1.1.0-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,344   Found link https://files.pythonhosted.org/packages/69/63/8bf182fe9e30def6cfff008dd01289b7cc513a3c8a7115282df52f052c2a/historydag-1.1.0.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 1.1.0
2024-05-07T07:37:21,345   Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/00/21/234dd72988a2e8b28aba5df488f675f7a6a440900b0f203cb1f932f0212b/historydag-1.2.0-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,346   Found link https://files.pythonhosted.org/packages/ee/18/aa8214e5fbead92e27d1516b4ff5adac17eb46c9a3a7ca9107401d64f398/historydag-1.2.0.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 1.2.0
2024-05-07T07:37:21,346   Skipping link: No binaries permitted for historydag: https://files.pythonhosted.org/packages/f2/7f/6e881276d6ad7640233cdcf3999b11f7d7e3baab3005bef33930d739c985/historydag-1.3.0-py3-none-any.whl (from https://pypi.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,347   Found link https://files.pythonhosted.org/packages/ce/0f/81d9bd3c2219384c5c4a7e53fd46d756822cf5b654dc1571657ef20c17f0/historydag-1.3.0.tar.gz (from https://pypi.org/simple/historydag/) (requires-python:>=3.7), version: 1.3.0
2024-05-07T07:37:21,348 Fetching project page and analyzing links: https://www.piwheels.org/simple/historydag/
2024-05-07T07:37:21,348 Getting page https://www.piwheels.org/simple/historydag/
2024-05-07T07:37:21,350 Found index url https://www.piwheels.org/simple/
2024-05-07T07:37:21,514 Fetched page https://www.piwheels.org/simple/historydag/ as text/html
2024-05-07T07:37:21,518   Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-1.2.0-py3-none-any.whl#sha256=aa15680aa631d4b69fbfd48f8338d420698d2fb3d8b25a2462b1a9889fb22e0d (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,518   Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-1.1.0-py3-none-any.whl#sha256=9ccbbfa91b3e33d216ef43eaa99671485751609a02c6a69ee1624dfb6df243c7 (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,519   Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-1.0.1-py3-none-any.whl#sha256=c32772945aaa5e8dcc48c8242dd4b80e62b85a02244d962c1263f476035880a8 (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,519   Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-1.0.0-py3-none-any.whl#sha256=e5cd5274c840582b631ac23066573c4dc46243176615f86ae5042c729fd3d654 (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,520   Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-0.1.3-py3-none-any.whl#sha256=d340a1460cfd0f94d28ce330f3261339ab61f913c390e7ebd11184ab23cd9535 (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,521   Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-0.1.2-py3-none-any.whl#sha256=df4c3e1e06b8edde4bc12908113a552612b5bbc1483cac1d1ecdfb0e915e2bba (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,521   Skipping link: No binaries permitted for historydag: https://www.piwheels.org/simple/historydag/historydag-0.1-py3-none-any.whl#sha256=d862e2d7050b1450b635e23abd5abdb762e129cff40374821862f8be7431ae31 (from https://www.piwheels.org/simple/historydag/) (requires-python:>=3.7)
2024-05-07T07:37:21,522 Skipping link: not a file: https://www.piwheels.org/simple/historydag/
2024-05-07T07:37:21,523 Skipping link: not a file: https://pypi.org/simple/historydag/
2024-05-07T07:37:21,542 Given no hashes to check 1 links for project 'historydag': discarding no candidates
2024-05-07T07:37:21,560 Collecting historydag==1.3.0
2024-05-07T07:37:21,562   Created temporary directory: /tmp/pip-unpack-xgspidcd
2024-05-07T07:37:21,776   Downloading historydag-1.3.0.tar.gz (139 kB)
2024-05-07T07:37:21,943   Added historydag==1.3.0 from https://files.pythonhosted.org/packages/ce/0f/81d9bd3c2219384c5c4a7e53fd46d756822cf5b654dc1571657ef20c17f0/historydag-1.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-6aw50bu9'
2024-05-07T07:37:21,945   Running setup.py (path:/tmp/pip-wheel-r1bpc73k/historydag_f926b126fdb24ffb851872cfd1b92446/setup.py) egg_info for package historydag
2024-05-07T07:37:21,946   Created temporary directory: /tmp/pip-pip-egg-info-tze4v03g
2024-05-07T07:37:21,947   Preparing metadata (setup.py): started
2024-05-07T07:37:21,948   Running command python setup.py egg_info
2024-05-07T07:37:23,122   running egg_info
2024-05-07T07:37:23,124   creating /tmp/pip-pip-egg-info-tze4v03g/historydag.egg-info
2024-05-07T07:37:23,148   writing /tmp/pip-pip-egg-info-tze4v03g/historydag.egg-info/PKG-INFO
2024-05-07T07:37:23,151   writing dependency_links to /tmp/pip-pip-egg-info-tze4v03g/historydag.egg-info/dependency_links.txt
2024-05-07T07:37:23,153   writing requirements to /tmp/pip-pip-egg-info-tze4v03g/historydag.egg-info/requires.txt
2024-05-07T07:37:23,154   writing top-level names to /tmp/pip-pip-egg-info-tze4v03g/historydag.egg-info/top_level.txt
2024-05-07T07:37:23,156   writing manifest file '/tmp/pip-pip-egg-info-tze4v03g/historydag.egg-info/SOURCES.txt'
2024-05-07T07:37:23,208   reading manifest file '/tmp/pip-pip-egg-info-tze4v03g/historydag.egg-info/SOURCES.txt'
2024-05-07T07:37:23,209   reading manifest template 'MANIFEST.in'
2024-05-07T07:37:23,210   adding license file 'LICENSE'
2024-05-07T07:37:23,212   writing manifest file '/tmp/pip-pip-egg-info-tze4v03g/historydag.egg-info/SOURCES.txt'
2024-05-07T07:37:23,331   Preparing metadata (setup.py): finished with status 'done'
2024-05-07T07:37:23,335   Source in /tmp/pip-wheel-r1bpc73k/historydag_f926b126fdb24ffb851872cfd1b92446 has version 1.3.0, which satisfies requirement historydag==1.3.0 from https://files.pythonhosted.org/packages/ce/0f/81d9bd3c2219384c5c4a7e53fd46d756822cf5b654dc1571657ef20c17f0/historydag-1.3.0.tar.gz
2024-05-07T07:37:23,336   Removed historydag==1.3.0 from https://files.pythonhosted.org/packages/ce/0f/81d9bd3c2219384c5c4a7e53fd46d756822cf5b654dc1571657ef20c17f0/historydag-1.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-6aw50bu9'
2024-05-07T07:37:23,342 Created temporary directory: /tmp/pip-unpack-kzq6p_jv
2024-05-07T07:37:23,343 Created temporary directory: /tmp/pip-unpack-cqi02ump
2024-05-07T07:37:23,352 Building wheels for collected packages: historydag
2024-05-07T07:37:23,356   Created temporary directory: /tmp/pip-wheel-fg25y5xu
2024-05-07T07:37:23,357   Building wheel for historydag (setup.py): started
2024-05-07T07:37:23,358   Destination directory: /tmp/pip-wheel-fg25y5xu
2024-05-07T07:37:23,359   Running command python setup.py bdist_wheel
2024-05-07T07:37:24,450   running bdist_wheel
2024-05-07T07:37:24,521   running build
2024-05-07T07:37:24,522   running build_py
2024-05-07T07:37:24,527   creating build
2024-05-07T07:37:24,527   creating build/lib
2024-05-07T07:37:24,528   creating build/lib/historydag
2024-05-07T07:37:24,529   copying historydag/dag_pb2.py -> build/lib/historydag
2024-05-07T07:37:24,531   copying historydag/dag.py -> build/lib/historydag
2024-05-07T07:37:24,536   copying historydag/counterops.py -> build/lib/historydag
2024-05-07T07:37:24,537   copying historydag/_version.py -> build/lib/historydag
2024-05-07T07:37:24,539   copying historydag/beast_loader.py -> build/lib/historydag
2024-05-07T07:37:24,541   copying historydag/utils.py -> build/lib/historydag
2024-05-07T07:37:24,544   copying historydag/mutation_annotated_dag.py -> build/lib/historydag
2024-05-07T07:37:24,546   copying historydag/parsimony.py -> build/lib/historydag
2024-05-07T07:37:24,549   copying historydag/dag_node.py -> build/lib/historydag
2024-05-07T07:37:24,551   copying historydag/__init__.py -> build/lib/historydag
2024-05-07T07:37:24,553   copying historydag/sankoff_cli.py -> build/lib/historydag
2024-05-07T07:37:24,555   copying historydag/likelihoods.py -> build/lib/historydag
2024-05-07T07:37:24,557   copying historydag/parsimony_utils.py -> build/lib/historydag
2024-05-07T07:37:24,559   copying historydag/compact_genome.py -> build/lib/historydag
2024-05-07T07:37:24,561   copying historydag/sequence_dag.py -> build/lib/historydag
2024-05-07T07:37:24,565   UPDATING build/lib/historydag/_version.py
2024-05-07T07:37:24,565   set build/lib/historydag/_version.py to '1.3.0'
2024-05-07T07:37:24,591   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-05-07T07:37:24,591   !!

2024-05-07T07:37:24,592           ********************************************************************************
2024-05-07T07:37:24,593           Please avoid running ``setup.py`` directly.
2024-05-07T07:37:24,593           Instead, use pypa/build, pypa/installer or other
2024-05-07T07:37:24,594           standards-based tools.

2024-05-07T07:37:24,595           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-05-07T07:37:24,595           ********************************************************************************

2024-05-07T07:37:24,596   !!
2024-05-07T07:37:24,597     self.initialize_options()
2024-05-07T07:37:24,615   installing to build/bdist.linux-armv7l/wheel
2024-05-07T07:37:24,616   running install
2024-05-07T07:37:24,641   running install_lib
2024-05-07T07:37:24,665   creating build/bdist.linux-armv7l
2024-05-07T07:37:24,666   creating build/bdist.linux-armv7l/wheel
2024-05-07T07:37:24,667   creating build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,668   copying build/lib/historydag/dag_pb2.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,670   copying build/lib/historydag/dag.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,675   copying build/lib/historydag/counterops.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,676   copying build/lib/historydag/_version.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,678   copying build/lib/historydag/beast_loader.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,680   copying build/lib/historydag/utils.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,683   copying build/lib/historydag/mutation_annotated_dag.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,685   copying build/lib/historydag/parsimony.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,688   copying build/lib/historydag/dag_node.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,690   copying build/lib/historydag/__init__.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,692   copying build/lib/historydag/sankoff_cli.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,694   copying build/lib/historydag/likelihoods.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,696   copying build/lib/historydag/parsimony_utils.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,699   copying build/lib/historydag/compact_genome.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,701   copying build/lib/historydag/sequence_dag.py -> build/bdist.linux-armv7l/wheel/historydag
2024-05-07T07:37:24,703   running install_egg_info
2024-05-07T07:37:24,764   running egg_info
2024-05-07T07:37:24,788   writing historydag.egg-info/PKG-INFO
2024-05-07T07:37:24,792   writing dependency_links to historydag.egg-info/dependency_links.txt
2024-05-07T07:37:24,793   writing requirements to historydag.egg-info/requires.txt
2024-05-07T07:37:24,795   writing top-level names to historydag.egg-info/top_level.txt
2024-05-07T07:37:24,823   reading manifest file 'historydag.egg-info/SOURCES.txt'
2024-05-07T07:37:24,825   reading manifest template 'MANIFEST.in'
2024-05-07T07:37:24,826   adding license file 'LICENSE'
2024-05-07T07:37:24,829   writing manifest file 'historydag.egg-info/SOURCES.txt'
2024-05-07T07:37:24,830   Copying historydag.egg-info to build/bdist.linux-armv7l/wheel/historydag-1.3.0-py3.11.egg-info
2024-05-07T07:37:24,840   running install_scripts
2024-05-07T07:37:24,855   creating build/bdist.linux-armv7l/wheel/historydag-1.3.0.dist-info/WHEEL
2024-05-07T07:37:24,857   creating '/tmp/pip-wheel-fg25y5xu/historydag-1.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-05-07T07:37:24,860   adding 'historydag/__init__.py'
2024-05-07T07:37:24,861   adding 'historydag/_version.py'
2024-05-07T07:37:24,864   adding 'historydag/beast_loader.py'
2024-05-07T07:37:24,867   adding 'historydag/compact_genome.py'
2024-05-07T07:37:24,868   adding 'historydag/counterops.py'
2024-05-07T07:37:24,888   adding 'historydag/dag.py'
2024-05-07T07:37:24,892   adding 'historydag/dag_node.py'
2024-05-07T07:37:24,894   adding 'historydag/dag_pb2.py'
2024-05-07T07:37:24,895   adding 'historydag/likelihoods.py'
2024-05-07T07:37:24,899   adding 'historydag/mutation_annotated_dag.py'
2024-05-07T07:37:24,902   adding 'historydag/parsimony.py'
2024-05-07T07:37:24,906   adding 'historydag/parsimony_utils.py'
2024-05-07T07:37:24,908   adding 'historydag/sankoff_cli.py'
2024-05-07T07:37:24,909   adding 'historydag/sequence_dag.py'
2024-05-07T07:37:24,914   adding 'historydag/utils.py'
2024-05-07T07:37:24,921   adding 'historydag-1.3.0.dist-info/LICENSE'
2024-05-07T07:37:24,923   adding 'historydag-1.3.0.dist-info/METADATA'
2024-05-07T07:37:24,924   adding 'historydag-1.3.0.dist-info/WHEEL'
2024-05-07T07:37:24,925   adding 'historydag-1.3.0.dist-info/top_level.txt'
2024-05-07T07:37:24,925   adding 'historydag-1.3.0.dist-info/RECORD'
2024-05-07T07:37:24,928   removing build/bdist.linux-armv7l/wheel
2024-05-07T07:37:25,054   Building wheel for historydag (setup.py): finished with status 'done'
2024-05-07T07:37:25,058   Created wheel for historydag: filename=historydag-1.3.0-py3-none-any.whl size=106337 sha256=99a90fbacdeba748bee758a2eec42ec748fd3a3b71f17c726e4d7885c99d48ba
2024-05-07T07:37:25,059   Stored in directory: /tmp/pip-ephem-wheel-cache-z7jxysv3/wheels/24/68/c6/b8cfe6661db7ecda452d0ec632b49d9145cc4395b48c8809b8
2024-05-07T07:37:25,071 Successfully built historydag
2024-05-07T07:37:25,077 Removed build tracker: '/tmp/pip-build-tracker-6aw50bu9'