2024-05-07T09:32:11,686 Created temporary directory: /tmp/pip-build-tracker-4ux6ggz2 2024-05-07T09:32:11,687 Initialized build tracking at /tmp/pip-build-tracker-4ux6ggz2 2024-05-07T09:32:11,688 Created build tracker: /tmp/pip-build-tracker-4ux6ggz2 2024-05-07T09:32:11,688 Entered build tracker: /tmp/pip-build-tracker-4ux6ggz2 2024-05-07T09:32:11,688 Created temporary directory: /tmp/pip-wheel-73uygqwa 2024-05-07T09:32:11,693 Created temporary directory: /tmp/pip-ephem-wheel-cache-9z7zuu8r 2024-05-07T09:32:11,716 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T09:32:11,720 2 location(s) to search for versions of cyto-dl: 2024-05-07T09:32:11,720 * https://pypi.org/simple/cyto-dl/ 2024-05-07T09:32:11,720 * https://www.piwheels.org/simple/cyto-dl/ 2024-05-07T09:32:11,720 Fetching project page and analyzing links: https://pypi.org/simple/cyto-dl/ 2024-05-07T09:32:11,721 Getting page https://pypi.org/simple/cyto-dl/ 2024-05-07T09:32:11,723 Found index url https://pypi.org/simple/ 2024-05-07T09:32:11,774 Fetched page https://pypi.org/simple/cyto-dl/ as application/vnd.pypi.simple.v1+json 2024-05-07T09:32:11,778 Found link https://files.pythonhosted.org/packages/2d/ce/accc274a32bba2bda7f6a3b571cff3b352bc9f7265f3979fe2a6071202e6/cyto-dl-0.0.0.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.0.0 2024-05-07T09:32:11,779 Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/46/b8/ef1396afb31a4f6f93d4869eb1ed5b8a382e03097e04c4f68b7d25bac065/cyto_dl-0.0.0-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,779 Found link https://files.pythonhosted.org/packages/db/c5/688b199e1350569abdd876695638911f72459fe519569239732db1f79cf2/cyto-dl-0.1.0.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.0 2024-05-07T09:32:11,780 Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/d3/a6/648b05e442881231d2207f7ab0d5e772aec94ce137d76f927428f7734627/cyto_dl-0.1.0-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,780 Found link https://files.pythonhosted.org/packages/c8/c3/a44ad991459e7e360db17bf9d396b7ca1efae05c895ab9111611cf95e81a/cyto-dl-0.1.1.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.1 2024-05-07T09:32:11,781 Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/cf/53/b1e709e2e304aa5af43e18e6ffd60d52dc6f7a251d75369b527912224b0f/cyto_dl-0.1.1-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,781 Found link https://files.pythonhosted.org/packages/b1/98/cef1b3548480d3313c7eec14db9a058aac7278599f4149b96dfd52269c5c/cyto-dl-0.1.2.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.2 2024-05-07T09:32:11,782 Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/5b/76/e5e59b3ee40d33f85df42bc12743199778a27981c454c528476d8c19e92c/cyto_dl-0.1.2-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,782 Found link https://files.pythonhosted.org/packages/1b/60/cbf2eb74445c8456cec413d0e9e2bb8b7122a7ce455a9db9429c4bbcbbc7/cyto-dl-0.1.3.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.3 2024-05-07T09:32:11,782 Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/d6/64/ba89cde2d20bd4c6442eda800703c8e74927f37738f70420221e9b19ce22/cyto_dl-0.1.3-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,783 Found link https://files.pythonhosted.org/packages/ef/81/9f96e80abebab3d58b3aa484dfcd1dd4a966ee2dadcbeb74842f2b895f50/cyto-dl-0.1.4.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.4 2024-05-07T09:32:11,783 Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/16/ce/c07f77b443a12ad05e1c8aa25e555877383e3375461bed3817b80e2d8b20/cyto_dl-0.1.4-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,784 Found link https://files.pythonhosted.org/packages/50/d9/435f90e4078f1fce33de5806c7c1b69111c0d0a1de6911169caf08d81cc8/cyto-dl-0.1.5.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:<3.11,>=3.8), version: 0.1.5 2024-05-07T09:32:11,784 Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/fd/09/912ef3ec2c75290744962da3207150025087ad87e4eeaf07d728408b5fff/cyto_dl-0.1.5-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:<3.11,>=3.8) 2024-05-07T09:32:11,785 Found link https://files.pythonhosted.org/packages/b3/8b/d63a5dc65c4df0fa35663a082ad2746b59b2a2746101c318f826d098fb99/cyto-dl-0.1.6.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:<3.11,>=3.9), version: 0.1.6 2024-05-07T09:32:11,785 Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/d5/27/c5b4a24ad2dc763a6990623d703030712681d36ce21f6246a6cfc717b116/cyto_dl-0.1.6-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:<3.11,>=3.9) 2024-05-07T09:32:11,785 Fetching project page and analyzing links: https://www.piwheels.org/simple/cyto-dl/ 2024-05-07T09:32:11,786 Getting page https://www.piwheels.org/simple/cyto-dl/ 2024-05-07T09:32:11,787 Found index url https://www.piwheels.org/simple/ 2024-05-07T09:32:11,908 Fetched page https://www.piwheels.org/simple/cyto-dl/ as text/html 2024-05-07T09:32:11,911 Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.5-py3-none-any.whl#sha256=25d4d66a7854d5b7913c265ee9d01e5f4925979f45a574fa0f05206c870133ff (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,911 Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.4-py3-none-any.whl#sha256=8b1b47e7988caa5dc491c248fafe11fa4fce1552da9c54c2c5ac7cc6e858b065 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,911 Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.3-py3-none-any.whl#sha256=58d3046249f9d44875c1222936983dd04f88ba6bb80346b95c9899582dab7f32 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,911 Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.2-py3-none-any.whl#sha256=4bbf20900a3b936ae82371fa2092a0167cfc89fd98ed75f940aa86e49cbc0fc3 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,912 Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.1-py3-none-any.whl#sha256=36e7c3552a2418bbd9d3527bf01ec6023becd6bd7c3b6d56a46af04ae942fec1 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,912 Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.0-py3-none-any.whl#sha256=7a5e6812050531fde61abdeffd59516819eeb4a6390cdab7ff992200bc2ea3d5 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,912 Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.0.0-py3-none-any.whl#sha256=e2d1c34bc6519ebedf101f589a6e562dac3b2b5a6cc2d61c4f38dc6432bd7695 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11) 2024-05-07T09:32:11,912 Skipping link: not a file: https://www.piwheels.org/simple/cyto-dl/ 2024-05-07T09:32:11,912 Skipping link: not a file: https://pypi.org/simple/cyto-dl/ 2024-05-07T09:32:11,929 Given no hashes to check 1 links for project 'cyto-dl': discarding no candidates 2024-05-07T09:32:11,945 Collecting cyto-dl==0.1.6 2024-05-07T09:32:11,947 Created temporary directory: /tmp/pip-unpack-uljaji1z 2024-05-07T09:32:12,265 Downloading cyto-dl-0.1.6.tar.gz (404 kB) 2024-05-07T09:32:12,860 Added cyto-dl==0.1.6 from https://files.pythonhosted.org/packages/b3/8b/d63a5dc65c4df0fa35663a082ad2746b59b2a2746101c318f826d098fb99/cyto-dl-0.1.6.tar.gz to build tracker '/tmp/pip-build-tracker-4ux6ggz2' 2024-05-07T09:32:12,867 Created temporary directory: /tmp/pip-build-env-1d_hw6c4 2024-05-07T09:32:12,877 Installing build dependencies: started 2024-05-07T09:32:12,878 Running command pip subprocess to install build dependencies 2024-05-07T09:32:14,067 Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2024-05-07T09:32:14,575 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T09:32:15,539 Collecting pdm-pep517>=1.0.0 2024-05-07T09:32:15,552 Downloading https://www.piwheels.org/simple/pdm-pep517/pdm_pep517-1.1.4-py3-none-any.whl (216 kB) 2024-05-07T09:32:15,588 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 216.4/216.4 kB 8.4 MB/s eta 0:00:00 2024-05-07T09:32:16,649 Collecting numpy>=1.23.5 2024-05-07T09:32:16,667 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB) 2024-05-07T09:32:18,340 Installing collected packages: pdm-pep517, numpy 2024-05-07T09:32:26,818 Creating /tmp/pip-build-env-1d_hw6c4/overlay/bin 2024-05-07T09:32:26,821 changing mode of /tmp/pip-build-env-1d_hw6c4/overlay/bin/f2py to 755 2024-05-07T09:32:26,854 Successfully installed numpy-1.26.4 pdm-pep517-1.1.4 2024-05-07T09:32:27,322 Installing build dependencies: finished with status 'done' 2024-05-07T09:32:27,328 Getting requirements to build wheel: started 2024-05-07T09:32:27,329 Running command Getting requirements to build wheel 2024-05-07T09:32:27,803 Getting requirements to build wheel: finished with status 'done' 2024-05-07T09:32:27,808 Created temporary directory: /tmp/pip-modern-metadata-3__wb2fr 2024-05-07T09:32:27,810 Preparing metadata (pyproject.toml): started 2024-05-07T09:32:27,811 Running command Preparing metadata (pyproject.toml) 2024-05-07T09:32:28,244 /tmp/pip-build-env-1d_hw6c4/overlay/lib/python3.9/site-packages/pdm/pep517/base.py:384: PDMWarning: 'license' is missing 2024-05-07T09:32:28,245 if meta.license_expression: 2024-05-07T09:32:28,284 /tmp/pip-build-env-1d_hw6c4/overlay/lib/python3.9/site-packages/pdm/pep517/api.py:51: PDMWarning: No license files are matched with glob patterns ['LICENSES/*', 'LICEN[CS]E*', 'COPYING*', 'NOTICE*', 'AUTHORS*']. 2024-05-07T09:32:28,284 for license_file in builder.find_license_files(): 2024-05-07T09:32:28,319 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-07T09:32:28,326 Source in /tmp/pip-wheel-73uygqwa/cyto-dl_eed89ec5434a40799ebbe08f72282d98 has version 0.1.6, which satisfies requirement cyto-dl==0.1.6 from https://files.pythonhosted.org/packages/b3/8b/d63a5dc65c4df0fa35663a082ad2746b59b2a2746101c318f826d098fb99/cyto-dl-0.1.6.tar.gz 2024-05-07T09:32:28,327 Removed cyto-dl==0.1.6 from https://files.pythonhosted.org/packages/b3/8b/d63a5dc65c4df0fa35663a082ad2746b59b2a2746101c318f826d098fb99/cyto-dl-0.1.6.tar.gz from build tracker '/tmp/pip-build-tracker-4ux6ggz2' 2024-05-07T09:32:28,334 Created temporary directory: /tmp/pip-unpack-0u7y9ob5 2024-05-07T09:32:28,335 Created temporary directory: /tmp/pip-unpack-no62vmpi 2024-05-07T09:32:28,463 Building wheels for collected packages: cyto-dl 2024-05-07T09:32:28,468 Created temporary directory: /tmp/pip-wheel-saloejbj 2024-05-07T09:32:28,468 Destination directory: /tmp/pip-wheel-saloejbj 2024-05-07T09:32:28,470 Building wheel for cyto-dl (pyproject.toml): started 2024-05-07T09:32:28,471 Running command Building wheel for cyto-dl (pyproject.toml) 2024-05-07T09:32:29,045 - Adding README.md 2024-05-07T09:32:29,046 - Adding configs/callbacks/default.yaml 2024-05-07T09:32:29,046 - Adding configs/callbacks/early_stopping.yaml 2024-05-07T09:32:29,046 - Adding configs/callbacks/layer_freeze.yaml 2024-05-07T09:32:29,046 - Adding configs/callbacks/learning_rate_monitor.yaml 2024-05-07T09:32:29,047 - Adding configs/callbacks/model_checkpoint.yaml 2024-05-07T09:32:29,047 - Adding configs/callbacks/model_summary.yaml 2024-05-07T09:32:29,047 - Adding configs/callbacks/none.yaml 2024-05-07T09:32:29,047 - Adding configs/callbacks/outlier_detection.yaml 2024-05-07T09:32:29,047 - Adding configs/callbacks/rich_progress_bar.yaml 2024-05-07T09:32:29,047 - Adding configs/compile.yaml 2024-05-07T09:32:29,047 - Adding configs/data/classification/single_timepoint.yaml 2024-05-07T09:32:29,047 - Adding configs/data/im2im/gan.yaml 2024-05-07T09:32:29,048 - Adding configs/data/im2im/gan_superres.yaml 2024-05-07T09:32:29,048 - Adding configs/data/im2im/instance_seg.yaml 2024-05-07T09:32:29,048 - Adding configs/data/im2im/labelfree.yaml 2024-05-07T09:32:29,048 - Adding configs/data/im2im/mae.yaml 2024-05-07T09:32:29,048 - Adding configs/data/im2im/segmentation.yaml 2024-05-07T09:32:29,048 - Adding configs/data/im2im/segmentation_plugin.yaml 2024-05-07T09:32:29,048 - Adding configs/data/im2im/segmentation_superres.yaml 2024-05-07T09:32:29,048 - Adding configs/data/private/lattice_nuc_sdf.yaml 2024-05-07T09:32:29,048 - Adding configs/data/private/rot_mnist.yaml 2024-05-07T09:32:29,049 - Adding configs/data/private/rot_mnist_vae.yaml 2024-05-07T09:32:29,049 - Adding configs/data/private/rotated_mnist.yaml 2024-05-07T09:32:29,049 - Adding configs/data/private/variance_3d.yaml 2024-05-07T09:32:29,049 - Adding configs/data/private/variance_3d_npm1.yaml 2024-05-07T09:32:29,049 - Adding configs/data/private/variance_3d_npm_nuc_v2.yaml 2024-05-07T09:32:29,049 - Adding configs/data/private/variance_3d_rotate.yaml 2024-05-07T09:32:29,049 - Adding configs/data/private/variance_centerslice.yaml 2024-05-07T09:32:29,049 - Adding configs/data/private/variance_centerslice_resize.yaml 2024-05-07T09:32:29,049 - Adding configs/data/private/variance_npm1.yaml 2024-05-07T09:32:29,050 - Adding configs/data/private/variance_spharm.yaml 2024-05-07T09:32:29,050 - Adding configs/data/test/alternating_batch.yaml 2024-05-07T09:32:29,050 - Adding configs/data/test/omnipose.yaml 2024-05-07T09:32:29,050 - Adding configs/data/test/segmentation.yaml 2024-05-07T09:32:29,050 - Adding configs/debug/default.yaml 2024-05-07T09:32:29,050 - Adding configs/debug/fdr.yaml 2024-05-07T09:32:29,051 - Adding configs/debug/limit.yaml 2024-05-07T09:32:29,051 - Adding configs/debug/overfit.yaml 2024-05-07T09:32:29,051 - Adding configs/debug/profiler.yaml 2024-05-07T09:32:29,051 - Adding configs/eval.yaml 2024-05-07T09:32:29,051 - Adding configs/experiment/classification/per_timepoint.yaml 2024-05-07T09:32:29,051 - Adding configs/experiment/im2im/gan.yaml 2024-05-07T09:32:29,052 - Adding configs/experiment/im2im/gan_superres.yaml 2024-05-07T09:32:29,052 - Adding configs/experiment/im2im/instance_seg.yaml 2024-05-07T09:32:29,052 - Adding configs/experiment/im2im/labelfree.yaml 2024-05-07T09:32:29,052 - Adding configs/experiment/im2im/mae.yaml 2024-05-07T09:32:29,052 - Adding configs/experiment/im2im/segmentation.yaml 2024-05-07T09:32:29,052 - Adding configs/experiment/im2im/segmentation_plugin.yaml 2024-05-07T09:32:29,053 - Adding configs/experiment/im2im/segmentation_superres.yaml 2024-05-07T09:32:29,053 - Adding configs/experiment/im2im/vit_segmentation.yaml 2024-05-07T09:32:29,053 - Adding configs/experiment/private/lattice_nuc_sdf.yaml 2024-05-07T09:32:29,053 - Adding configs/experiment/private/mnist_so2.yaml 2024-05-07T09:32:29,053 - Adding configs/experiment/private/npm1_classical_3d_vae.yaml 2024-05-07T09:32:29,053 - Adding configs/experiment/private/npm1_classical_scale_inv.yaml 2024-05-07T09:32:29,053 - Adding configs/experiment/private/npm1_equiv_3d_vae_3dnucalign.yaml 2024-05-07T09:32:29,054 - Adding configs/experiment/private/npm1_scale_inv_canon_so3.yaml 2024-05-07T09:32:29,054 - Adding configs/experiment/private/npm1_so2.yaml 2024-05-07T09:32:29,054 - Adding configs/experiment/private/npm1_so2_scale_inv.yaml 2024-05-07T09:32:29,054 - Adding configs/experiment/private/npm1_so3_scale_inv.yaml 2024-05-07T09:32:29,054 - Adding configs/experiment/private/npm1_so3_vae.yaml 2024-05-07T09:32:29,054 - Adding configs/experiment/private/npm1_so3_vae_seg.yaml 2024-05-07T09:32:29,055 - Adding configs/experiment/private/variance_classical_2d_vae.yaml 2024-05-07T09:32:29,055 - Adding configs/experiment/private/variance_classical_3d_vae.yaml 2024-05-07T09:32:29,055 - Adding configs/experiment/private/variance_so2_3d_vae.yaml 2024-05-07T09:32:29,055 - Adding configs/experiment/private/variance_so2_3d_vae_profiling.yaml 2024-05-07T09:32:29,055 - Adding configs/experiment/private/variance_spharm.yaml 2024-05-07T09:32:29,055 - Adding configs/experiment/private/variance_spharm_o2.yaml 2024-05-07T09:32:29,056 - Adding configs/extras/default.yaml 2024-05-07T09:32:29,056 - Adding configs/hparams_search/mnist_optuna.yaml 2024-05-07T09:32:29,056 - Adding configs/hydra/default.yaml 2024-05-07T09:32:29,056 - Adding configs/logger/comet.yaml 2024-05-07T09:32:29,056 - Adding configs/logger/csv.yaml 2024-05-07T09:32:29,056 - Adding configs/logger/many_loggers.yaml 2024-05-07T09:32:29,056 - Adding configs/logger/mlflow.yaml 2024-05-07T09:32:29,057 - Adding configs/logger/neptune.yaml 2024-05-07T09:32:29,057 - Adding configs/logger/tensorboard.yaml 2024-05-07T09:32:29,057 - Adding configs/logger/wandb.yaml 2024-05-07T09:32:29,057 - Adding configs/model/classification/single_timepoint.yaml 2024-05-07T09:32:29,057 - Adding configs/model/im2im/gan.yaml 2024-05-07T09:32:29,057 - Adding configs/model/im2im/gan_superres.yaml 2024-05-07T09:32:29,058 - Adding configs/model/im2im/instance_seg.yaml 2024-05-07T09:32:29,058 - Adding configs/model/im2im/labelfree.yaml 2024-05-07T09:32:29,058 - Adding configs/model/im2im/mae.yaml 2024-05-07T09:32:29,058 - Adding configs/model/im2im/segmentation.yaml 2024-05-07T09:32:29,058 - Adding configs/model/im2im/segmentation_plugin.yaml 2024-05-07T09:32:29,058 - Adding configs/model/im2im/segmentation_superres.yaml 2024-05-07T09:32:29,059 - Adding configs/model/im2im/vit_segmentation_decoder.yaml 2024-05-07T09:32:29,059 - Adding configs/model/private/classical_image_ae.yaml 2024-05-07T09:32:29,059 - Adding configs/model/private/classical_image_vae.yaml 2024-05-07T09:32:29,059 - Adding configs/model/private/reconstruction_loss/spharm_gaussian.yaml 2024-05-07T09:32:29,059 - Adding configs/model/private/reconstruction_loss/spharm_loss.yaml 2024-05-07T09:32:29,059 - Adding configs/model/private/reconstruction_loss/spharm_mse.yaml 2024-05-07T09:32:29,059 - Adding configs/model/private/reconstruction_loss/spharm_weighted_mse.yaml 2024-05-07T09:32:29,060 - Adding configs/model/private/so3_canon_image_vae.yaml 2024-05-07T09:32:29,060 - Adding configs/model/private/so3_equiv_image_vae.yaml 2024-05-07T09:32:29,060 - Adding configs/model/private/spharm.yaml 2024-05-07T09:32:29,060 - Adding configs/model/private/spharm_so2.yaml 2024-05-07T09:32:29,060 - Adding configs/model/test/base.yaml 2024-05-07T09:32:29,060 - Adding configs/model/test/simple_segmentation.yaml 2024-05-07T09:32:29,060 - Adding configs/paths/default.yaml 2024-05-07T09:32:29,061 - Adding configs/train.yaml 2024-05-07T09:32:29,061 - Adding configs/trainer/cpu.yaml 2024-05-07T09:32:29,061 - Adding configs/trainer/ddp.yaml 2024-05-07T09:32:29,061 - Adding configs/trainer/ddp_sim.yaml 2024-05-07T09:32:29,061 - Adding configs/trainer/default.yaml 2024-05-07T09:32:29,061 - Adding configs/trainer/gpu.yaml 2024-05-07T09:32:29,062 - Adding configs/trainer/mps.yaml 2024-05-07T09:32:29,062 - Adding cyto_dl/__init__.py 2024-05-07T09:32:29,062 - Adding cyto_dl/api/__init__.py 2024-05-07T09:32:29,062 - Adding cyto_dl/api/cyto_dl_model/__init__.py 2024-05-07T09:32:29,062 - Adding cyto_dl/api/cyto_dl_model/cyto_dl_base_model.py 2024-05-07T09:32:29,062 - Adding cyto_dl/api/cyto_dl_model/segmentation_plugin_model.py 2024-05-07T09:32:29,062 - Adding cyto_dl/api/data.py 2024-05-07T09:32:29,063 - Adding cyto_dl/api/model.py 2024-05-07T09:32:29,063 - Adding cyto_dl/callbacks/__init__.py 2024-05-07T09:32:29,063 - Adding cyto_dl/callbacks/callback_utils.py 2024-05-07T09:32:29,063 - Adding cyto_dl/callbacks/latent_walk.py 2024-05-07T09:32:29,063 - Adding cyto_dl/callbacks/layer_freeze.py 2024-05-07T09:32:29,063 - Adding cyto_dl/callbacks/model_utils.py 2024-05-07T09:32:29,064 - Adding cyto_dl/callbacks/outlier_detection.py 2024-05-07T09:32:29,064 - Adding cyto_dl/compile.py 2024-05-07T09:32:29,064 - Adding cyto_dl/dataframe/__init__.py 2024-05-07T09:32:29,064 - Adding cyto_dl/dataframe/readers.py 2024-05-07T09:32:29,064 - Adding cyto_dl/dataframe/transforms/__init__.py 2024-05-07T09:32:29,064 - Adding cyto_dl/dataframe/transforms/filter.py 2024-05-07T09:32:29,064 - Adding cyto_dl/dataframe/transforms/group_cols.py 2024-05-07T09:32:29,065 - Adding cyto_dl/dataframe/transforms/misc.py 2024-05-07T09:32:29,065 - Adding cyto_dl/dataframe/transforms/split.py 2024-05-07T09:32:29,065 - Adding cyto_dl/datamodules/__init__.py 2024-05-07T09:32:29,065 - Adding cyto_dl/datamodules/czi.py 2024-05-07T09:32:29,065 - Adding cyto_dl/datamodules/data_dict.py 2024-05-07T09:32:29,065 - Adding cyto_dl/datamodules/dataframe/__init__.py 2024-05-07T09:32:29,065 - Adding cyto_dl/datamodules/dataframe/dataframe_datamodule.py 2024-05-07T09:32:29,066 - Adding cyto_dl/datamodules/dataframe/grouped_dataframe_datamodule.py 2024-05-07T09:32:29,066 - Adding cyto_dl/datamodules/dataframe/utils.py 2024-05-07T09:32:29,066 - Adding cyto_dl/datamodules/folder.py 2024-05-07T09:32:29,066 - Adding cyto_dl/datamodules/smartcache.py 2024-05-07T09:32:29,066 - Adding cyto_dl/datamodules/torchvision.py 2024-05-07T09:32:29,066 - Adding cyto_dl/eval.py 2024-05-07T09:32:29,067 - Adding cyto_dl/image/__init__.py 2024-05-07T09:32:29,067 - Adding cyto_dl/image/io/__init__.py 2024-05-07T09:32:29,067 - Adding cyto_dl/image/io/aicsimage_loader.py 2024-05-07T09:32:29,067 - Adding cyto_dl/image/io/monai_bio_reader.py 2024-05-07T09:32:29,067 - Adding cyto_dl/image/io/numpy_reader.py 2024-05-07T09:32:29,067 - Adding cyto_dl/image/io/ome_zarr_reader.py 2024-05-07T09:32:29,067 - Adding cyto_dl/image/io/polygon_loader.py 2024-05-07T09:32:29,068 - Adding cyto_dl/image/io/skimage_reader.py 2024-05-07T09:32:29,068 - Adding cyto_dl/image/transforms/__init__.py 2024-05-07T09:32:29,068 - Adding cyto_dl/image/transforms/bright_sampler.py 2024-05-07T09:32:29,068 - Adding cyto_dl/image/transforms/clip.py 2024-05-07T09:32:29,068 - Adding cyto_dl/image/transforms/contrastadjust.py 2024-05-07T09:32:29,068 - Adding cyto_dl/image/transforms/merge.py 2024-05-07T09:32:29,069 - Adding cyto_dl/image/transforms/multiscale_cropper.py 2024-05-07T09:32:29,069 - Adding cyto_dl/image/transforms/pad.py 2024-05-07T09:32:29,069 - Adding cyto_dl/image/transforms/project.py 2024-05-07T09:32:29,069 - Adding cyto_dl/image/transforms/rotation_mask_transform.py 2024-05-07T09:32:29,069 - Adding cyto_dl/image/transforms/save.py 2024-05-07T09:32:29,069 - Adding cyto_dl/image/transforms/so2_random_rotation.py 2024-05-07T09:32:29,069 - Adding cyto_dl/image/transforms/track_transforms.py 2024-05-07T09:32:29,070 - Adding cyto_dl/loggers/__init__.py 2024-05-07T09:32:29,070 - Adding cyto_dl/loggers/mlflow.py 2024-05-07T09:32:29,070 - Adding cyto_dl/models/__init__.py 2024-05-07T09:32:29,070 - Adding cyto_dl/models/base_model.py 2024-05-07T09:32:29,070 - Adding cyto_dl/models/basic_model.py 2024-05-07T09:32:29,070 - Adding cyto_dl/models/classification/__init__.py 2024-05-07T09:32:29,070 - Adding cyto_dl/models/classification/classification.py 2024-05-07T09:32:29,071 - Adding cyto_dl/models/classification/timepoint_classification.py 2024-05-07T09:32:29,071 - Adding cyto_dl/models/handlers/__init__.py 2024-05-07T09:32:29,356 - Adding cyto_dl/models/handlers/base_handler.py 2024-05-07T09:32:29,356 - Adding cyto_dl/models/handlers/image_handler.py 2024-05-07T09:32:29,356 - Adding cyto_dl/models/handlers/load_image_patch.py 2024-05-07T09:32:29,357 - Adding cyto_dl/models/im2im/__init__.py 2024-05-07T09:32:29,357 - Adding cyto_dl/models/im2im/gan.py 2024-05-07T09:32:29,357 - Adding cyto_dl/models/im2im/multi_task.py 2024-05-07T09:32:29,357 - Adding cyto_dl/models/im2im/utils/__init__.py 2024-05-07T09:32:29,357 - Adding cyto_dl/models/im2im/utils/instance_seg.py 2024-05-07T09:32:29,358 - Adding cyto_dl/models/im2im/utils/noise_annealer.py 2024-05-07T09:32:29,358 - Adding cyto_dl/models/im2im/utils/postprocessing/__init__.py 2024-05-07T09:32:29,358 - Adding cyto_dl/models/im2im/utils/postprocessing/act_thresh_label.py 2024-05-07T09:32:29,358 - Adding cyto_dl/models/im2im/utils/postprocessing/auto_thresh.py 2024-05-07T09:32:29,358 - Adding cyto_dl/models/im2im/utils/postprocessing/dict_to_im.py 2024-05-07T09:32:29,359 - Adding cyto_dl/models/utils/__init__.py 2024-05-07T09:32:29,359 - Adding cyto_dl/models/utils/mlflow.py 2024-05-07T09:32:29,359 - Adding cyto_dl/models/utils/utils.py 2024-05-07T09:32:29,359 - Adding cyto_dl/models/vae/__init__.py 2024-05-07T09:32:29,359 - Adding cyto_dl/models/vae/base_vae.py 2024-05-07T09:32:29,360 - Adding cyto_dl/models/vae/image_canon_vae.py 2024-05-07T09:32:29,360 - Adding cyto_dl/models/vae/image_encoder.py 2024-05-07T09:32:29,360 - Adding cyto_dl/models/vae/image_vae.py 2024-05-07T09:32:29,360 - Adding cyto_dl/models/vae/latent_loss_vae.py 2024-05-07T09:32:29,360 - Adding cyto_dl/models/vae/o2_spharm_vae/__init__.py 2024-05-07T09:32:29,361 - Adding cyto_dl/models/vae/o2_spharm_vae/o2_spharm_encoder.py 2024-05-07T09:32:29,361 - Adding cyto_dl/models/vae/o2_spharm_vae/o2_spharm_vae.py 2024-05-07T09:32:29,361 - Adding cyto_dl/models/vae/point_cloud_vae.py 2024-05-07T09:32:29,361 - Adding cyto_dl/models/vae/priors/__init__.py 2024-05-07T09:32:29,361 - Adding cyto_dl/models/vae/priors/abstract_prior.py 2024-05-07T09:32:29,362 - Adding cyto_dl/models/vae/priors/gaussian.py 2024-05-07T09:32:29,362 - Adding cyto_dl/models/vae/priors/identity_prior.py 2024-05-07T09:32:29,362 - Adding cyto_dl/models/vae/priors/joint_prior.py 2024-05-07T09:32:29,362 - Adding cyto_dl/models/vae/tabular_vae.py 2024-05-07T09:32:29,362 - Adding cyto_dl/nn/__init__.py 2024-05-07T09:32:29,363 - Adding cyto_dl/nn/discriminators/__init__.py 2024-05-07T09:32:29,363 - Adding cyto_dl/nn/discriminators/multi_scale_discriminator.py 2024-05-07T09:32:29,363 - Adding cyto_dl/nn/discriminators/n_layer_discriminator.py 2024-05-07T09:32:29,363 - Adding cyto_dl/nn/head/__init__.py 2024-05-07T09:32:29,363 - Adding cyto_dl/nn/head/base_head.py 2024-05-07T09:32:29,364 - Adding cyto_dl/nn/head/gan_head.py 2024-05-07T09:32:29,364 - Adding cyto_dl/nn/head/gan_head_superres.py 2024-05-07T09:32:29,364 - Adding cyto_dl/nn/head/mae_head.py 2024-05-07T09:32:29,364 - Adding cyto_dl/nn/head/mask_head.py 2024-05-07T09:32:29,364 - Adding cyto_dl/nn/head/res_blocks_head.py 2024-05-07T09:32:29,365 - Adding cyto_dl/nn/hr_skip.py 2024-05-07T09:32:29,365 - Adding cyto_dl/nn/losses/__init__.py 2024-05-07T09:32:29,365 - Adding cyto_dl/nn/losses/adversarial_loss.py 2024-05-07T09:32:29,365 - Adding cyto_dl/nn/losses/chamfer_loss.py 2024-05-07T09:32:29,365 - Adding cyto_dl/nn/losses/continuous_bernoulli.py 2024-05-07T09:32:29,366 - Adding cyto_dl/nn/losses/cosine_loss.py 2024-05-07T09:32:29,366 - Adding cyto_dl/nn/losses/gan_loss.py 2024-05-07T09:32:29,366 - Adding cyto_dl/nn/losses/gaussian_nll_loss.py 2024-05-07T09:32:29,366 - Adding cyto_dl/nn/losses/geomloss.py 2024-05-07T09:32:29,366 - Adding cyto_dl/nn/losses/loss_wrapper.py 2024-05-07T09:32:29,366 - Adding cyto_dl/nn/losses/spharm_loss.py 2024-05-07T09:32:29,366 - Adding cyto_dl/nn/losses/threshold_loss.py 2024-05-07T09:32:29,367 - Adding cyto_dl/nn/losses/weibull.py 2024-05-07T09:32:29,367 - Adding cyto_dl/nn/losses/weighted_mse_loss.py 2024-05-07T09:32:29,367 - Adding cyto_dl/nn/mlp.py 2024-05-07T09:32:29,367 - Adding cyto_dl/nn/point_cloud/__init__.py 2024-05-07T09:32:29,368 - Adding cyto_dl/nn/point_cloud/dgcnn.py 2024-05-07T09:32:29,368 - Adding cyto_dl/nn/point_cloud/folding_net.py 2024-05-07T09:32:29,368 - Adding cyto_dl/nn/point_cloud/graph_functions.py 2024-05-07T09:32:29,368 - Adding cyto_dl/nn/point_cloud/vnn.py 2024-05-07T09:32:29,368 - Adding cyto_dl/nn/res_unit.py 2024-05-07T09:32:29,369 - Adding cyto_dl/nn/spatial_transformer.py 2024-05-07T09:32:29,369 - Adding cyto_dl/nn/track_sequence_predictor.py 2024-05-07T09:32:29,369 - Adding cyto_dl/nn/vits/__init__.py 2024-05-07T09:32:29,369 - Adding cyto_dl/nn/vits/blocks/__init__.py 2024-05-07T09:32:29,369 - Adding cyto_dl/nn/vits/blocks/cross_attention.py 2024-05-07T09:32:29,370 - Adding cyto_dl/nn/vits/blocks/intermediate_weigher.py 2024-05-07T09:32:29,370 - Adding cyto_dl/nn/vits/blocks/patchify.py 2024-05-07T09:32:29,370 - Adding cyto_dl/nn/vits/cross_mae.py 2024-05-07T09:32:29,370 - Adding cyto_dl/nn/vits/mae.py 2024-05-07T09:32:29,370 - Adding cyto_dl/nn/vits/seg.py 2024-05-07T09:32:29,371 - Adding cyto_dl/nn/vits/utils.py 2024-05-07T09:32:29,371 - Adding cyto_dl/point_cloud/__init__.py 2024-05-07T09:32:29,371 - Adding cyto_dl/point_cloud/io/__init__.py 2024-05-07T09:32:29,371 - Adding cyto_dl/point_cloud/io/read_pcloud.py 2024-05-07T09:32:29,371 - Adding cyto_dl/train.py 2024-05-07T09:32:29,372 - Adding cyto_dl/utils/__init__.py 2024-05-07T09:32:29,372 - Adding cyto_dl/utils/config.py 2024-05-07T09:32:29,372 - Adding cyto_dl/utils/download_test_data.py 2024-05-07T09:32:29,372 - Adding cyto_dl/utils/dummy_dataset.py 2024-05-07T09:32:29,373 - Adding cyto_dl/utils/pylogger.py 2024-05-07T09:32:29,373 - Adding cyto_dl/utils/rich_utils.py 2024-05-07T09:32:29,373 - Adding cyto_dl/utils/rotation.py 2024-05-07T09:32:29,373 - Adding cyto_dl/utils/spharm/__init__.py 2024-05-07T09:32:29,373 - Adding cyto_dl/utils/spharm/reconstruction.py 2024-05-07T09:32:29,374 - Adding cyto_dl/utils/spharm/rotation.py 2024-05-07T09:32:29,374 - Adding cyto_dl/utils/template_utils.py 2024-05-07T09:32:29,374 - Adding tests/api/cyto_dl_model/bad_config.yaml 2024-05-07T09:32:29,374 - Adding cyto_dl-0.1.6.dist-info/METADATA 2024-05-07T09:32:29,374 - Adding cyto_dl-0.1.6.dist-info/WHEEL 2024-05-07T09:32:29,393 Building wheel for cyto-dl (pyproject.toml): finished with status 'done' 2024-05-07T09:32:29,400 Created wheel for cyto-dl: filename=cyto_dl-0.1.6-py3-none-any.whl size=255040 sha256=26c53c9ad523c8755ceca91278828ea640c90777be6692540f2cc61bef49d142 2024-05-07T09:32:29,401 Stored in directory: /tmp/pip-ephem-wheel-cache-9z7zuu8r/wheels/bb/bb/0d/a901036621187d1385cf3ae35fbdffed7294becee43455fe73 2024-05-07T09:32:29,422 Successfully built cyto-dl 2024-05-07T09:32:29,430 Removed build tracker: '/tmp/pip-build-tracker-4ux6ggz2'