2024-05-07T12:34:40,876 Created temporary directory: /tmp/pip-build-tracker-x1qkx0r2
2024-05-07T12:34:40,877 Initialized build tracking at /tmp/pip-build-tracker-x1qkx0r2
2024-05-07T12:34:40,878 Created build tracker: /tmp/pip-build-tracker-x1qkx0r2
2024-05-07T12:34:40,878 Entered build tracker: /tmp/pip-build-tracker-x1qkx0r2
2024-05-07T12:34:40,879 Created temporary directory: /tmp/pip-wheel-z1nkvg0y
2024-05-07T12:34:40,882 Created temporary directory: /tmp/pip-ephem-wheel-cache-quqp1ib9
2024-05-07T12:34:40,904 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-07T12:34:40,907 2 location(s) to search for versions of stcat:
2024-05-07T12:34:40,907 * https://pypi.org/simple/stcat/
2024-05-07T12:34:40,907 * https://www.piwheels.org/simple/stcat/
2024-05-07T12:34:40,908 Fetching project page and analyzing links: https://pypi.org/simple/stcat/
2024-05-07T12:34:40,909 Getting page https://pypi.org/simple/stcat/
2024-05-07T12:34:40,910 Found index url https://pypi.org/simple/
2024-05-07T12:34:41,046 Fetched page https://pypi.org/simple/stcat/ as application/vnd.pypi.simple.v1+json
2024-05-07T12:34:41,049   Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/dd/d9/7509763cc9a3235091c79b0b4a3a9a415f7b643a68593550ab533d06677d/STCAT-0.2-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8)
2024-05-07T12:34:41,050   Found link https://files.pythonhosted.org/packages/54/ff/46d805ee24659e6c5896441d6a58a39f48af44e54ab5496acf66a564fbc2/STCAT-0.2.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.2
2024-05-07T12:34:41,050   Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/a1/c2/622b9f058b24687ff867af676fe1a228e5ce888299d80fb946f23947d90b/STCAT-0.3-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8)
2024-05-07T12:34:41,051   Found link https://files.pythonhosted.org/packages/0a/80/6f95d103fabcc905d1f3752b8df72f6f94bbee03d856fea3b87d6734399e/STCAT-0.3.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.3
2024-05-07T12:34:41,052   Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/00/9f/c43fc909bbaa04cc23ab22dce4347ba97041c75509b1ad05cb32208af304/STCAT-0.3.1-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8)
2024-05-07T12:34:41,053   Found link https://files.pythonhosted.org/packages/3d/85/26de4a35d00621ab453aec285423cd2d8dcd8894aed6c104efd051548eb2/STCAT-0.3.1.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.3.1
2024-05-07T12:34:41,053   Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/82/30/81637812215bbf231cfcde640e3e9b6d9c2f03ca047ee35e4da2f00451ef/STCAT-0.4-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8)
2024-05-07T12:34:41,054   Found link https://files.pythonhosted.org/packages/b1/2c/d5c45eed6a58face4a30c3d86a73f9ecf36428a3c1dba4e8261ee8b49491/STCAT-0.4.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.4
2024-05-07T12:34:41,055   Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/c0/e2/4eb4ba85784764e9f06ff3e3ea3984483797409d9dbb78bac2bc72aefcda/STCAT-0.5-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8)
2024-05-07T12:34:41,056   Found link https://files.pythonhosted.org/packages/63/4b/4c69ba9d101bddf6c744e6b95d7dd1baf70bfdca8f35d5d3d699286c9818/STCAT-0.5.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.5
2024-05-07T12:34:41,057 Fetching project page and analyzing links: https://www.piwheels.org/simple/stcat/
2024-05-07T12:34:41,057 Getting page https://www.piwheels.org/simple/stcat/
2024-05-07T12:34:41,059 Found index url https://www.piwheels.org/simple/
2024-05-07T12:34:41,288 Fetched page https://www.piwheels.org/simple/stcat/ as text/html
2024-05-07T12:34:41,290   Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.4-py3-none-any.whl#sha256=1fc9535179dab13c6c61b1b6e2fcd1bd257776472eb6c91d94140ae9d3194adb (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8)
2024-05-07T12:34:41,291   Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.3.1-py3-none-any.whl#sha256=9222fb8e2c8a9b3ced6fcf927634943d0a8ff963cf28ca70f0f85907bb76dcf2 (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8)
2024-05-07T12:34:41,292   Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.3-py3-none-any.whl#sha256=09afd386b49d2f718b124e55b00afc7b12430010014558c7d7df34f006324d19 (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8)
2024-05-07T12:34:41,292   Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.2-py3-none-any.whl#sha256=faf26d207bd572f5fad92b52dcd16f0d45056fa51631366657ba80adc9e9f1ff (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8)
2024-05-07T12:34:41,293 Skipping link: not a file: https://www.piwheels.org/simple/stcat/
2024-05-07T12:34:41,293 Skipping link: not a file: https://pypi.org/simple/stcat/
2024-05-07T12:34:41,312 Given no hashes to check 1 links for project 'stcat': discarding no candidates
2024-05-07T12:34:41,330 Collecting stcat==0.5
2024-05-07T12:34:41,332   Created temporary directory: /tmp/pip-unpack-un4a9zt4
2024-05-07T12:34:41,556   Downloading STCAT-0.5.tar.gz (1.7 MB)
2024-05-07T12:34:42,048   Added stcat==0.5 from https://files.pythonhosted.org/packages/63/4b/4c69ba9d101bddf6c744e6b95d7dd1baf70bfdca8f35d5d3d699286c9818/STCAT-0.5.tar.gz to build tracker '/tmp/pip-build-tracker-x1qkx0r2'
2024-05-07T12:34:42,050   Running setup.py (path:/tmp/pip-wheel-z1nkvg0y/stcat_2a6d9e5a40454246b8e89a97a6d57e0c/setup.py) egg_info for package stcat
2024-05-07T12:34:42,051   Created temporary directory: /tmp/pip-pip-egg-info-k3j3oqy4
2024-05-07T12:34:42,051   Preparing metadata (setup.py): started
2024-05-07T12:34:42,053   Running command python setup.py egg_info
2024-05-07T12:34:43,164   running egg_info
2024-05-07T12:34:43,165   creating /tmp/pip-pip-egg-info-k3j3oqy4/STCAT.egg-info
2024-05-07T12:34:43,191   writing /tmp/pip-pip-egg-info-k3j3oqy4/STCAT.egg-info/PKG-INFO
2024-05-07T12:34:43,194   writing dependency_links to /tmp/pip-pip-egg-info-k3j3oqy4/STCAT.egg-info/dependency_links.txt
2024-05-07T12:34:43,197   writing requirements to /tmp/pip-pip-egg-info-k3j3oqy4/STCAT.egg-info/requires.txt
2024-05-07T12:34:43,198   writing top-level names to /tmp/pip-pip-egg-info-k3j3oqy4/STCAT.egg-info/top_level.txt
2024-05-07T12:34:43,199   writing manifest file '/tmp/pip-pip-egg-info-k3j3oqy4/STCAT.egg-info/SOURCES.txt'
2024-05-07T12:34:43,283   reading manifest file '/tmp/pip-pip-egg-info-k3j3oqy4/STCAT.egg-info/SOURCES.txt'
2024-05-07T12:34:43,284   reading manifest template 'MANIFEST.in'
2024-05-07T12:34:43,289   writing manifest file '/tmp/pip-pip-egg-info-k3j3oqy4/STCAT.egg-info/SOURCES.txt'
2024-05-07T12:34:43,407   Preparing metadata (setup.py): finished with status 'done'
2024-05-07T12:34:43,411   Source in /tmp/pip-wheel-z1nkvg0y/stcat_2a6d9e5a40454246b8e89a97a6d57e0c has version 0.5, which satisfies requirement stcat==0.5 from https://files.pythonhosted.org/packages/63/4b/4c69ba9d101bddf6c744e6b95d7dd1baf70bfdca8f35d5d3d699286c9818/STCAT-0.5.tar.gz
2024-05-07T12:34:43,412   Removed stcat==0.5 from https://files.pythonhosted.org/packages/63/4b/4c69ba9d101bddf6c744e6b95d7dd1baf70bfdca8f35d5d3d699286c9818/STCAT-0.5.tar.gz from build tracker '/tmp/pip-build-tracker-x1qkx0r2'
2024-05-07T12:34:43,418 Created temporary directory: /tmp/pip-unpack-4dm2mzvu
2024-05-07T12:34:43,419 Created temporary directory: /tmp/pip-unpack-ypj9y6ml
2024-05-07T12:34:43,430 Building wheels for collected packages: stcat
2024-05-07T12:34:43,434   Created temporary directory: /tmp/pip-wheel-czvpej5f
2024-05-07T12:34:43,435   Building wheel for stcat (setup.py): started
2024-05-07T12:34:43,436   Destination directory: /tmp/pip-wheel-czvpej5f
2024-05-07T12:34:43,436   Running command python setup.py bdist_wheel
2024-05-07T12:34:44,537   running bdist_wheel
2024-05-07T12:34:44,638   running build
2024-05-07T12:34:44,638   running build_py
2024-05-07T12:34:44,666   creating build
2024-05-07T12:34:44,667   creating build/lib
2024-05-07T12:34:44,667   creating build/lib/STCAT
2024-05-07T12:34:44,669   copying STCAT/logger.py -> build/lib/STCAT
2024-05-07T12:34:44,670   copying STCAT/STCAT.py -> build/lib/STCAT
2024-05-07T12:34:44,673   copying STCAT/classifier.py -> build/lib/STCAT
2024-05-07T12:34:44,676   copying STCAT/__init__.py -> build/lib/STCAT
2024-05-07T12:34:44,678   copying STCAT/models.py -> build/lib/STCAT
2024-05-07T12:34:44,680   copying STCAT/annotate.py -> build/lib/STCAT
2024-05-07T12:34:44,682   running egg_info
2024-05-07T12:34:44,739   writing STCAT.egg-info/PKG-INFO
2024-05-07T12:34:44,742   writing dependency_links to STCAT.egg-info/dependency_links.txt
2024-05-07T12:34:44,744   writing requirements to STCAT.egg-info/requires.txt
2024-05-07T12:34:44,745   writing top-level names to STCAT.egg-info/top_level.txt
2024-05-07T12:34:44,778   reading manifest file 'STCAT.egg-info/SOURCES.txt'
2024-05-07T12:34:44,780   reading manifest template 'MANIFEST.in'
2024-05-07T12:34:44,785   writing manifest file 'STCAT.egg-info/SOURCES.txt'
2024-05-07T12:34:44,787   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'STCAT.data' is absent from the `packages` configuration.
2024-05-07T12:34:44,788   !!

2024-05-07T12:34:44,789           ********************************************************************************
2024-05-07T12:34:44,789           ############################
2024-05-07T12:34:44,790           # Package would be ignored #
2024-05-07T12:34:44,790           ############################
2024-05-07T12:34:44,791           Python recognizes 'STCAT.data' as an importable package[^1],
2024-05-07T12:34:44,791           but it is absent from setuptools' `packages` configuration.

2024-05-07T12:34:44,792           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T12:34:44,793           package, please make sure that 'STCAT.data' is explicitly added
2024-05-07T12:34:44,793           to the `packages` configuration field.

2024-05-07T12:34:44,795           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T12:34:44,795           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T12:34:44,796           instead of `find_packages(...)`/`find:`).

2024-05-07T12:34:44,806           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T12:34:44,809           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T12:34:44,810           If you don't want 'STCAT.data' to be distributed and are
2024-05-07T12:34:44,810           already explicitly excluding 'STCAT.data' via
2024-05-07T12:34:44,811           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T12:34:44,811           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T12:34:44,812           combination with a more fine grained `package-data` configuration.

2024-05-07T12:34:44,813           You can read more about "package data files" on setuptools documentation page:

2024-05-07T12:34:44,817           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T12:34:44,822           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T12:34:44,822                 even if it does not contain any `.py` files.
2024-05-07T12:34:44,823                 On the other hand, currently there is no concept of package data
2024-05-07T12:34:44,823                 directory, all directories are treated like packages.
2024-05-07T12:34:44,824           ********************************************************************************

2024-05-07T12:34:44,825   !!
2024-05-07T12:34:44,826     check.warn(importable)
2024-05-07T12:34:44,827   creating build/lib/STCAT/data
2024-05-07T12:34:44,828   copying STCAT/data/T_cell.pkl -> build/lib/STCAT/data
2024-05-07T12:34:44,829   copying STCAT/data/cd4.pkl -> build/lib/STCAT/data
2024-05-07T12:34:44,829   copying STCAT/data/cd8.pkl -> build/lib/STCAT/data
2024-05-07T12:34:44,833   copying STCAT/data/marker_CD4.txt -> build/lib/STCAT/data
2024-05-07T12:34:44,836   copying STCAT/data/marker_CD8.txt -> build/lib/STCAT/data
2024-05-07T12:34:44,863   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-05-07T12:34:44,864   !!

2024-05-07T12:34:44,865           ********************************************************************************
2024-05-07T12:34:44,865           Please avoid running ``setup.py`` directly.
2024-05-07T12:34:44,866           Instead, use pypa/build, pypa/installer or other
2024-05-07T12:34:44,867           standards-based tools.

2024-05-07T12:34:44,868           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-05-07T12:34:44,868           ********************************************************************************

2024-05-07T12:34:44,869   !!
2024-05-07T12:34:44,869     self.initialize_options()
2024-05-07T12:34:44,890   installing to build/bdist.linux-armv7l/wheel
2024-05-07T12:34:44,891   running install
2024-05-07T12:34:44,915   running install_lib
2024-05-07T12:34:44,941   creating build/bdist.linux-armv7l
2024-05-07T12:34:44,941   creating build/bdist.linux-armv7l/wheel
2024-05-07T12:34:44,943   creating build/bdist.linux-armv7l/wheel/STCAT
2024-05-07T12:34:44,944   copying build/lib/STCAT/logger.py -> build/bdist.linux-armv7l/wheel/STCAT
2024-05-07T12:34:44,946   copying build/lib/STCAT/STCAT.py -> build/bdist.linux-armv7l/wheel/STCAT
2024-05-07T12:34:44,949   copying build/lib/STCAT/classifier.py -> build/bdist.linux-armv7l/wheel/STCAT
2024-05-07T12:34:44,952   creating build/bdist.linux-armv7l/wheel/STCAT/data
2024-05-07T12:34:44,953   copying build/lib/STCAT/data/cd8.pkl -> build/bdist.linux-armv7l/wheel/STCAT/data
2024-05-07T12:34:44,959   copying build/lib/STCAT/data/marker_CD4.txt -> build/bdist.linux-armv7l/wheel/STCAT/data
2024-05-07T12:34:44,962   copying build/lib/STCAT/data/cd4.pkl -> build/bdist.linux-armv7l/wheel/STCAT/data
2024-05-07T12:34:44,974   copying build/lib/STCAT/data/T_cell.pkl -> build/bdist.linux-armv7l/wheel/STCAT/data
2024-05-07T12:34:44,991   copying build/lib/STCAT/data/marker_CD8.txt -> build/bdist.linux-armv7l/wheel/STCAT/data
2024-05-07T12:34:44,993   copying build/lib/STCAT/__init__.py -> build/bdist.linux-armv7l/wheel/STCAT
2024-05-07T12:34:44,995   copying build/lib/STCAT/models.py -> build/bdist.linux-armv7l/wheel/STCAT
2024-05-07T12:34:44,998   copying build/lib/STCAT/annotate.py -> build/bdist.linux-armv7l/wheel/STCAT
2024-05-07T12:34:45,000   running install_egg_info
2024-05-07T12:34:45,034   Copying STCAT.egg-info to build/bdist.linux-armv7l/wheel/STCAT-0.5-py3.11.egg-info
2024-05-07T12:34:45,044   running install_scripts
2024-05-07T12:34:45,057   creating build/bdist.linux-armv7l/wheel/STCAT-0.5.dist-info/WHEEL
2024-05-07T12:34:45,059   creating '/tmp/pip-wheel-czvpej5f/STCAT-0.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-05-07T12:34:45,062   adding 'STCAT/STCAT.py'
2024-05-07T12:34:45,064   adding 'STCAT/__init__.py'
2024-05-07T12:34:45,066   adding 'STCAT/annotate.py'
2024-05-07T12:34:45,069   adding 'STCAT/classifier.py'
2024-05-07T12:34:45,070   adding 'STCAT/logger.py'
2024-05-07T12:34:45,072   adding 'STCAT/models.py'
2024-05-07T12:34:45,222   adding 'STCAT/data/T_cell.pkl'
2024-05-07T12:34:45,308   adding 'STCAT/data/cd4.pkl'
2024-05-07T12:34:45,352   adding 'STCAT/data/cd8.pkl'
2024-05-07T12:34:45,356   adding 'STCAT/data/marker_CD4.txt'
2024-05-07T12:34:45,358   adding 'STCAT/data/marker_CD8.txt'
2024-05-07T12:34:45,360   adding 'STCAT-0.5.dist-info/METADATA'
2024-05-07T12:34:45,362   adding 'STCAT-0.5.dist-info/WHEEL'
2024-05-07T12:34:45,365   adding 'STCAT-0.5.dist-info/top_level.txt'
2024-05-07T12:34:45,366   adding 'STCAT-0.5.dist-info/RECORD'
2024-05-07T12:34:45,410   removing build/bdist.linux-armv7l/wheel
2024-05-07T12:34:45,567   Building wheel for stcat (setup.py): finished with status 'done'
2024-05-07T12:34:45,592   Created wheel for stcat: filename=STCAT-0.5-py3-none-any.whl size=1709980 sha256=129d56f002bc386b4039e47de1ecdf4ec194e05e74b03e72f35c4fbbf6003229
2024-05-07T12:34:45,593   Stored in directory: /tmp/pip-ephem-wheel-cache-quqp1ib9/wheels/3d/8f/3a/ad5a30de70fbbdcb3751a4728e211a29ce31943c536ef87f7b
2024-05-07T12:34:45,605 Successfully built stcat
2024-05-07T12:34:45,688 Removed build tracker: '/tmp/pip-build-tracker-x1qkx0r2'