2024-05-07T12:49:06,061 Created temporary directory: /tmp/pip-build-tracker-po6lwxed 2024-05-07T12:49:06,062 Initialized build tracking at /tmp/pip-build-tracker-po6lwxed 2024-05-07T12:49:06,063 Created build tracker: /tmp/pip-build-tracker-po6lwxed 2024-05-07T12:49:06,063 Entered build tracker: /tmp/pip-build-tracker-po6lwxed 2024-05-07T12:49:06,064 Created temporary directory: /tmp/pip-wheel-khn91nt7 2024-05-07T12:49:06,067 Created temporary directory: /tmp/pip-ephem-wheel-cache-39pszv82 2024-05-07T12:49:06,090 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T12:49:06,094 2 location(s) to search for versions of lhc-python: 2024-05-07T12:49:06,094 * https://pypi.org/simple/lhc-python/ 2024-05-07T12:49:06,094 * https://www.piwheels.org/simple/lhc-python/ 2024-05-07T12:49:06,095 Fetching project page and analyzing links: https://pypi.org/simple/lhc-python/ 2024-05-07T12:49:06,095 Getting page https://pypi.org/simple/lhc-python/ 2024-05-07T12:49:06,097 Found index url https://pypi.org/simple/ 2024-05-07T12:49:06,401 Fetched page https://pypi.org/simple/lhc-python/ as application/vnd.pypi.simple.v1+json 2024-05-07T12:49:06,410 Found link https://files.pythonhosted.org/packages/20/4d/bcfad057cf7e5ed81328ef0610bc25252402409ca94ba348d5b5752eb976/lhc-python-1.1.1.zip (from https://pypi.org/simple/lhc-python/), version: 1.1.1 2024-05-07T12:49:06,411 Found link https://files.pythonhosted.org/packages/e7/a6/76eb4a8bab55d03b619571bc2116566506cc2e7ce7460f157143b2567850/lhc-python-1.1.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.2 2024-05-07T12:49:06,411 Found link https://files.pythonhosted.org/packages/03/2c/263a9b1a6156f88c8646c14b4c76dfe68db2acd3969f415360425a4a4c8b/lhc-python-1.1.4.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.4 2024-05-07T12:49:06,412 Found link https://files.pythonhosted.org/packages/77/15/0f7890596b67965f3756409e62171d917a41dff58add86e8bc8f0288d795/lhc-python-1.1.5.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.5 2024-05-07T12:49:06,413 Found link https://files.pythonhosted.org/packages/c9/54/dba9993c22f589d368dc6ceac40e97950a8c9d17752d56bdfcf4258b7ff3/lhc-python-1.1.6.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.6 2024-05-07T12:49:06,413 Found link https://files.pythonhosted.org/packages/3e/3e/3c07514aaed13cb82e26335ce97c335e9fd03c2722da0411a94c199aea2c/lhc-python-1.2.1.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.2.1 2024-05-07T12:49:06,414 Found link https://files.pythonhosted.org/packages/d8/5d/9c598e5688faddf029d1a3b937f6ef06a8f4dfaa658f2a02461a8f9bfefb/lhc-python-1.2.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.2.2 2024-05-07T12:49:06,415 Found link 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https://files.pythonhosted.org/packages/2c/26/77838568e47ffec9240b9259358a56c5b28af39f38ce4ef6c491c3edcc22/lhc_python-1.3.3-py3.5.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T12:49:06,421 Found link https://files.pythonhosted.org/packages/08/2c/dbba954ea06f536e50cfbbc7f41c3cec0c404193bb935985f6d0c4c9be1a/lhc-python-1.3.4.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.3.4 2024-05-07T12:49:06,421 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d4/b8/b4b4fa3aae1d493035265fd30b39c5d40f6ab6ed8bef4efb4ec857ffef02/lhc_python-1.3.4-py3.5.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T12:49:06,422 Found link https://files.pythonhosted.org/packages/d0/8c/7d064ff887f1cc9c89002e33bcb238ba42f21457a03f5defedafbf5f3e84/lhc-python-1.3.5.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.3.5 2024-05-07T12:49:06,422 Skipping link: unsupported archive format: .egg: 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https://files.pythonhosted.org/packages/b2/43/4d3d6f66c39eb2ce7988d5093f266a5b7f48f5807a627144778697f18c3d/lhc_python-2.0.2-py3.6.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T12:49:06,430 Found link https://files.pythonhosted.org/packages/ce/b5/081d3442e7eb776a3d7f633a3b6155279368791b30ff36b2646f541cdf6a/lhc-python-2.0.3.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.0.3 2024-05-07T12:49:06,431 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0d/0b/dfcbd35dcc42a69971de088078c258f0be3c74518dc899a8291ebf434059/lhc_python-2.0.3-py3.6.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T12:49:06,431 Found link https://files.pythonhosted.org/packages/22/5c/c503283c44974ebb16c4dd828d20d22a5ca2590c2aaf394c7e19a8fb3ec3/lhc-python-2.1.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.2 2024-05-07T12:49:06,432 Found link https://files.pythonhosted.org/packages/84/46/1e7d026008a62d75f4d1f2472238aaff1f0640b56847cabff90fbeb5be52/lhc-python-2.1.3.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.3 2024-05-07T12:49:06,433 Found link https://files.pythonhosted.org/packages/22/1b/2b6c832c9daa4415fac59998f62d8550b5b27c7d58eaad7831d892c868c0/lhc-python-2.1.4.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.4 2024-05-07T12:49:06,433 Found link https://files.pythonhosted.org/packages/fb/37/c48870f38b0f8ef9e7176578ac19b147d029b4c803a215abba653200bc81/lhc-python-2.1.5.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.5 2024-05-07T12:49:06,434 Found link https://files.pythonhosted.org/packages/eb/d8/3643ac239d95d3aa912de2fa42ca9d19ace2c808fd6e3544c59fc3d42f5d/lhc-python-2.1.6.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.6 2024-05-07T12:49:06,434 Found link https://files.pythonhosted.org/packages/52/78/2f403e2cd2bb73bf29b6f5f18d22a3e50bb051c9364c47f4462b5efd5998/lhc-python-2.1.7.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.7 2024-05-07T12:49:06,435 Found link https://files.pythonhosted.org/packages/92/55/ea8060918c8217e3b94a5d060c8e520afbc2f0a5a0cc521e9353a63ba430/lhc-python-2.1.8.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.8 2024-05-07T12:49:06,436 Found link https://files.pythonhosted.org/packages/89/80/5c410402cd1616f21426cf8a67d4263bfe7c03328b36934e80578ebdeca0/lhc-python-2.2.0.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.2.0 2024-05-07T12:49:06,437 Found link https://files.pythonhosted.org/packages/2a/8b/c3ebd46c60800a5a6ff42dda3ea397b4ad67aae35d7c70478129c22d2595/lhc-python-2.3.0.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.3.0 2024-05-07T12:49:06,437 Found link https://files.pythonhosted.org/packages/35/65/0c81d0a68bce1ad009b36e2dcea7376b9b075cc3e0078d0c90a3e5b835aa/lhc-python-2.3.1.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.3.1 2024-05-07T12:49:06,438 Found link https://files.pythonhosted.org/packages/4b/24/689dfb21592cdbb2be8bf2875ff9bd6e1415977c72c59ba9aa31a2361b1a/lhc-python-2.5.0.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.5.0 2024-05-07T12:49:06,439 Found link https://files.pythonhosted.org/packages/13/b0/185d0d7e7efc96a3b76d9dabc6632073378e21436364271d36b7f3c2b145/lhc_python-2.5.1.tar.gz (from https://pypi.org/simple/lhc-python/) (requires-python:>=3.0), version: 2.5.1 2024-05-07T12:49:06,440 Fetching project page and analyzing links: https://www.piwheels.org/simple/lhc-python/ 2024-05-07T12:49:06,441 Getting page https://www.piwheels.org/simple/lhc-python/ 2024-05-07T12:49:06,442 Found index url https://www.piwheels.org/simple/ 2024-05-07T12:49:06,661 Fetched page https://www.piwheels.org/simple/lhc-python/ as text/html 2024-05-07T12:49:06,669 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp37-cp37m-linux_armv6l.whl#sha256=5f4be52dacdba47e8e187aa794ebf6c409a898befcbd9a4a1e1bc1b2e2d2b3b3 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,669 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp37-cp37m-linux_armv7l.whl#sha256=5f4be52dacdba47e8e187aa794ebf6c409a898befcbd9a4a1e1bc1b2e2d2b3b3 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,670 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b955e9687b1382d9e684fdb6d679bb6ae85d30d3937f37af4ff886151427db1c (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,671 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b955e9687b1382d9e684fdb6d679bb6ae85d30d3937f37af4ff886151427db1c (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,671 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp34-cp34m-linux_armv7l.whl#sha256=f71bbe1c1b28e0dfdb25d560edf25b694166ca13f7aa4042275f358a57021bbc (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,672 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp34-cp34m-linux_armv6l.whl#sha256=f71bbe1c1b28e0dfdb25d560edf25b694166ca13f7aa4042275f358a57021bbc (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,672 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-python-py3-none-any.whl#sha256=deb5c0ee519268ff09ca32fc2b3290795790aadd6a94266e3e4740405ca3860a (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,673 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-py3-none-any.whl#sha256=4e6ea2cdd256aff52b5c9f8be9561e908881fc9bd1410aeba0a6de7314943875 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,673 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.8-py3-none-any.whl#sha256=f9723dff85a195da072299de362ce59c8d78ad8e6f6ce3c50f0ad86f76dc1191 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,674 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.7-py3-none-any.whl#sha256=2e265c9621fce0bbf8256fd10eedc5702068b49cdad1c35ecf5472f636d71b6a (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,675 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.6-py3-none-any.whl#sha256=c9c7368cf2cf8c6bc41386185f20ee192bda870b2a8435396edebd0137a93deb (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,675 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.5-py3-none-any.whl#sha256=a7d94751ffac710ba149d64225d9baabe5483de0f2962e7d8e69693747c4d02f (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,676 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.4-py3-none-any.whl#sha256=4d6654477c0c4b950069859178d13e0cda55d662710788d85785127f835b56dd (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,677 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.3-py3-none-any.whl#sha256=f48dd77f42e9a1bce9b146c899672e708f821dd99a9387bc003ddb7bae7f85f5 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,677 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.2-py3-none-any.whl#sha256=35e2ae84128c5e5468e11b45074afffd45cc2cbcf67c85390e7da88c2e7d45fd (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,678 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.1-py3-none-any.whl#sha256=81d19c382e5b599d59572d40e693021169e5e1ac75d2a2fc01d121f4730cd0a1 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,679 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.0-py3-none-any.whl#sha256=5f8d7359e1266989d96923f003d01754bdf0ec69ca33c1090f90a02738891e2e (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,679 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.6-py3-none-any.whl#sha256=d298acc485624c198c5bbc63fde139cb0d68d3a0485689978db8389643b2234f (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,680 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.5-py3-none-any.whl#sha256=c2a95400b7accd32f33010761938fb7faa2d56c68a184b45905077eac5539acc (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,680 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.4-py3-none-any.whl#sha256=a27467fd63e9d8aa1b8bbafa2afdbeec1fa9ad4de10c42232f39dfdf58140fc1 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,681 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.3-py3-none-any.whl#sha256=95fd10f8114946d0853912946df0e975e89f7941f05fe76a536486df5d2eb2df (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,681 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.2-py3-none-any.whl#sha256=dcb66868d70a0f2278bc5581da822e48001a6ce2e942597e910a444401169977 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,681 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.1-py3-none-any.whl#sha256=cce46dbf75b349c6d1a1e07137fcb53d43db81db44cca36018feb51402d1ee63 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,682 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.1.6-py3-none-any.whl#sha256=186631a6f058bcea60cab0617672fbdf0622ca248f93fe4ba0fcd5b99e81e155 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,683 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.1.5-py3-none-any.whl#sha256=edfeded10bbaebc6d2ae8d7f2a884c6d3f5e6f5fecf24464876f924a3d1345f5 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,683 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.1.4-py3-none-any.whl#sha256=d32211a85640f4a17ff83662d611e5f83b67c896923f1375f71b638fa4d3b6d7 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T12:49:06,684 Skipping link: not a file: https://www.piwheels.org/simple/lhc-python/ 2024-05-07T12:49:06,684 Skipping link: not a file: https://pypi.org/simple/lhc-python/ 2024-05-07T12:49:06,707 Given no hashes to check 1 links for project 'lhc-python': discarding no candidates 2024-05-07T12:49:06,726 Collecting lhc-python==2.5.1 2024-05-07T12:49:06,728 Created temporary directory: /tmp/pip-unpack-rzr3it0r 2024-05-07T12:49:06,943 Downloading lhc_python-2.5.1.tar.gz (85 kB) 2024-05-07T12:49:07,313 Added lhc-python==2.5.1 from https://files.pythonhosted.org/packages/13/b0/185d0d7e7efc96a3b76d9dabc6632073378e21436364271d36b7f3c2b145/lhc_python-2.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-po6lwxed' 2024-05-07T12:49:07,318 Created temporary directory: /tmp/pip-build-env-cwaw_hfb 2024-05-07T12:49:07,323 Installing build dependencies: started 2024-05-07T12:49:07,324 Running command pip subprocess to install build dependencies 2024-05-07T12:49:08,455 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-07T12:49:09,149 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T12:49:10,704 Collecting setuptools>=61.0.0 2024-05-07T12:49:10,725 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-07T12:49:10,947 Collecting wheel 2024-05-07T12:49:10,961 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-07T12:49:13,581 Installing collected packages: wheel, setuptools 2024-05-07T12:49:13,810 Creating /tmp/pip-build-env-cwaw_hfb/overlay/local/bin 2024-05-07T12:49:13,812 changing mode of /tmp/pip-build-env-cwaw_hfb/overlay/local/bin/wheel to 755 2024-05-07T12:49:16,229 Successfully installed setuptools-69.5.1 wheel-0.43.0 2024-05-07T12:49:16,732 Installing build dependencies: finished with status 'done' 2024-05-07T12:49:16,736 Getting requirements to build wheel: started 2024-05-07T12:49:16,737 Running command Getting requirements to build wheel 2024-05-07T12:49:17,597 running egg_info 2024-05-07T12:49:17,602 writing src/lhc_python.egg-info/PKG-INFO 2024-05-07T12:49:17,606 writing dependency_links to src/lhc_python.egg-info/dependency_links.txt 2024-05-07T12:49:17,608 writing requirements to src/lhc_python.egg-info/requires.txt 2024-05-07T12:49:17,609 writing top-level names to src/lhc_python.egg-info/top_level.txt 2024-05-07T12:49:17,659 reading manifest file 'src/lhc_python.egg-info/SOURCES.txt' 2024-05-07T12:49:17,664 adding license file 'LICENSE.txt' 2024-05-07T12:49:17,672 writing manifest file 'src/lhc_python.egg-info/SOURCES.txt' 2024-05-07T12:49:17,793 Getting requirements to build wheel: finished with status 'done' 2024-05-07T12:49:17,803 Created temporary directory: /tmp/pip-modern-metadata-r4p5sz4z 2024-05-07T12:49:17,806 Preparing metadata (pyproject.toml): started 2024-05-07T12:49:17,807 Running command Preparing metadata (pyproject.toml) 2024-05-07T12:49:18,590 running dist_info 2024-05-07T12:49:18,595 creating /tmp/pip-modern-metadata-r4p5sz4z/lhc_python.egg-info 2024-05-07T12:49:18,599 writing /tmp/pip-modern-metadata-r4p5sz4z/lhc_python.egg-info/PKG-INFO 2024-05-07T12:49:18,603 writing dependency_links to /tmp/pip-modern-metadata-r4p5sz4z/lhc_python.egg-info/dependency_links.txt 2024-05-07T12:49:18,605 writing requirements to /tmp/pip-modern-metadata-r4p5sz4z/lhc_python.egg-info/requires.txt 2024-05-07T12:49:18,606 writing top-level names to /tmp/pip-modern-metadata-r4p5sz4z/lhc_python.egg-info/top_level.txt 2024-05-07T12:49:18,608 writing manifest file '/tmp/pip-modern-metadata-r4p5sz4z/lhc_python.egg-info/SOURCES.txt' 2024-05-07T12:49:18,651 reading manifest file '/tmp/pip-modern-metadata-r4p5sz4z/lhc_python.egg-info/SOURCES.txt' 2024-05-07T12:49:18,653 adding license file 'LICENSE.txt' 2024-05-07T12:49:18,659 writing manifest file '/tmp/pip-modern-metadata-r4p5sz4z/lhc_python.egg-info/SOURCES.txt' 2024-05-07T12:49:18,660 creating '/tmp/pip-modern-metadata-r4p5sz4z/lhc_python-2.5.1.dist-info' 2024-05-07T12:49:18,816 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-07T12:49:18,824 Source in /tmp/pip-wheel-khn91nt7/lhc-python_940ec9106f9c4a9ea7473ac9a571e086 has version 2.5.1, which satisfies requirement lhc-python==2.5.1 from https://files.pythonhosted.org/packages/13/b0/185d0d7e7efc96a3b76d9dabc6632073378e21436364271d36b7f3c2b145/lhc_python-2.5.1.tar.gz 2024-05-07T12:49:18,825 Removed lhc-python==2.5.1 from https://files.pythonhosted.org/packages/13/b0/185d0d7e7efc96a3b76d9dabc6632073378e21436364271d36b7f3c2b145/lhc_python-2.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-po6lwxed' 2024-05-07T12:49:18,838 Created temporary directory: /tmp/pip-unpack-vt0tswkl 2024-05-07T12:49:18,839 Created temporary directory: /tmp/pip-unpack-3ec0lmo_ 2024-05-07T12:49:18,852 Building wheels for collected packages: lhc-python 2024-05-07T12:49:18,857 Created temporary directory: /tmp/pip-wheel-isnr5tr2 2024-05-07T12:49:18,857 Destination directory: /tmp/pip-wheel-isnr5tr2 2024-05-07T12:49:18,860 Building wheel for lhc-python (pyproject.toml): started 2024-05-07T12:49:18,862 Running command Building wheel for lhc-python (pyproject.toml) 2024-05-07T12:49:19,617 running bdist_wheel 2024-05-07T12:49:19,633 running build 2024-05-07T12:49:19,634 running build_py 2024-05-07T12:49:19,638 creating build 2024-05-07T12:49:19,639 creating build/lib.linux-armv7l-cpython-311 2024-05-07T12:49:19,639 creating build/lib.linux-armv7l-cpython-311/lhc 2024-05-07T12:49:19,641 copying src/lhc/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc 2024-05-07T12:49:19,643 creating build/lib.linux-armv7l-cpython-311/lib 2024-05-07T12:49:19,644 creating build/lib.linux-armv7l-cpython-311/lib/digen 2024-05-07T12:49:19,645 copying src/lib/digen/__init__.py -> build/lib.linux-armv7l-cpython-311/lib/digen 2024-05-07T12:49:19,647 copying src/lib/digen/setup.py -> build/lib.linux-armv7l-cpython-311/lib/digen 2024-05-07T12:49:19,648 copying src/lib/digen/digen.py -> build/lib.linux-armv7l-cpython-311/lib/digen 2024-05-07T12:49:19,651 creating build/lib.linux-armv7l-cpython-311/lhc/itertools 2024-05-07T12:49:19,652 copying src/lhc/itertools/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/itertools 2024-05-07T12:49:19,654 copying src/lhc/itertools/merge_sorted.py -> build/lib.linux-armv7l-cpython-311/lhc/itertools 2024-05-07T12:49:19,656 copying src/lhc/itertools/chunked_iterator.py -> build/lib.linux-armv7l-cpython-311/lhc/itertools 2024-05-07T12:49:19,657 copying src/lhc/itertools/sorted_iterator_merger.py -> build/lib.linux-armv7l-cpython-311/lhc/itertools 2024-05-07T12:49:19,660 creating build/lib.linux-armv7l-cpython-311/lhc/entities 2024-05-07T12:49:19,661 copying src/lhc/entities/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/entities 2024-05-07T12:49:19,663 creating build/lib.linux-armv7l-cpython-311/lhc/cli 2024-05-07T12:49:19,663 copying src/lhc/cli/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/cli 2024-05-07T12:49:19,666 creating build/lib.linux-armv7l-cpython-311/lhc/collections 2024-05-07T12:49:19,666 copying src/lhc/collections/sequence_set.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2024-05-07T12:49:19,668 copying src/lhc/collections/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2024-05-07T12:49:19,670 copying src/lhc/collections/interval_set.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2024-05-07T12:49:19,671 copying src/lhc/collections/tabix_file_wrapper.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2024-05-07T12:49:19,673 copying src/lhc/collections/one_pass_interval_set.py -> build/lib.linux-armv7l-cpython-311/lhc/collections 2024-05-07T12:49:19,675 creating build/lib.linux-armv7l-cpython-311/lhc/misc 2024-05-07T12:49:19,676 copying src/lhc/misc/kmer.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2024-05-07T12:49:19,678 copying src/lhc/misc/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2024-05-07T12:49:19,680 copying src/lhc/misc/iupac.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2024-05-07T12:49:19,681 copying src/lhc/misc/string.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2024-05-07T12:49:19,683 copying src/lhc/misc/genetic_code.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2024-05-07T12:49:19,685 copying src/lhc/misc/reservoir.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2024-05-07T12:49:19,687 copying src/lhc/misc/natural_key.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2024-05-07T12:49:19,689 copying src/lhc/misc/tokeniser.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2024-05-07T12:49:19,691 copying src/lhc/misc/argparse.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2024-05-07T12:49:19,692 copying src/lhc/misc/skew.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2024-05-07T12:49:19,694 copying src/lhc/misc/performance_measures.py -> build/lib.linux-armv7l-cpython-311/lhc/misc 2024-05-07T12:49:19,697 creating build/lib.linux-armv7l-cpython-311/lhc/io 2024-05-07T12:49:19,698 copying src/lhc/io/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io 2024-05-07T12:49:19,699 copying src/lhc/io/filepool.py -> build/lib.linux-armv7l-cpython-311/lhc/io 2024-05-07T12:49:19,701 copying src/lhc/io/file.py -> build/lib.linux-armv7l-cpython-311/lhc/io 2024-05-07T12:49:19,703 copying src/lhc/io/cut.py -> build/lib.linux-armv7l-cpython-311/lhc/io 2024-05-07T12:49:19,705 creating build/lib.linux-armv7l-cpython-311/lhc/graph 2024-05-07T12:49:19,705 copying src/lhc/graph/graph.py -> build/lib.linux-armv7l-cpython-311/lhc/graph 2024-05-07T12:49:19,708 copying src/lhc/graph/hyper_graph.py -> build/lib.linux-armv7l-cpython-311/lhc/graph 2024-05-07T12:49:19,709 copying src/lhc/graph/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/graph 2024-05-07T12:49:19,711 copying src/lhc/graph/n_partite_graph.py -> build/lib.linux-armv7l-cpython-311/lhc/graph 2024-05-07T12:49:19,713 copying src/lhc/graph/n_partite_graph_printer.py -> build/lib.linux-armv7l-cpython-311/lhc/graph 2024-05-07T12:49:19,715 creating build/lib.linux-armv7l-cpython-311/lhc/entities/locus 2024-05-07T12:49:19,716 copying src/lhc/entities/locus/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/locus 2024-05-07T12:49:19,717 copying src/lhc/entities/locus/make_loci.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/locus 2024-05-07T12:49:19,720 creating build/lib.linux-armv7l-cpython-311/lhc/entities/genomic_coordinate 2024-05-07T12:49:19,720 copying src/lhc/entities/genomic_coordinate/nested_genomic_interval.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/genomic_coordinate 2024-05-07T12:49:19,722 copying src/lhc/entities/genomic_coordinate/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/genomic_coordinate 2024-05-07T12:49:19,724 copying src/lhc/entities/genomic_coordinate/genomic_interval.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/genomic_coordinate 2024-05-07T12:49:19,726 copying src/lhc/entities/genomic_coordinate/genomic_position.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/genomic_coordinate 2024-05-07T12:49:19,728 creating build/lib.linux-armv7l-cpython-311/lhc/entities/variant 2024-05-07T12:49:19,729 copying src/lhc/entities/variant/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/variant 2024-05-07T12:49:19,731 copying src/lhc/entities/variant/merger.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/variant 2024-05-07T12:49:19,733 copying src/lhc/entities/variant/amino_acid_variant.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/variant 2024-05-07T12:49:19,735 copying src/lhc/entities/variant/codon_variant.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/variant 2024-05-07T12:49:19,737 copying src/lhc/entities/variant/variant.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/variant 2024-05-07T12:49:19,738 copying src/lhc/entities/variant/coding_variant.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/variant 2024-05-07T12:49:19,740 copying src/lhc/entities/variant/variant_effect.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/variant 2024-05-07T12:49:19,742 creating build/lib.linux-armv7l-cpython-311/lhc/entities/interval 2024-05-07T12:49:19,743 copying src/lhc/entities/interval/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/interval 2024-05-07T12:49:19,745 copying src/lhc/entities/interval/interval.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/interval 2024-05-07T12:49:19,750 copying src/lhc/entities/interval/binner.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/interval 2024-05-07T12:49:19,751 copying src/lhc/entities/interval/set_operations.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/interval 2024-05-07T12:49:19,754 creating build/lib.linux-armv7l-cpython-311/lhc/entities/sequence 2024-05-07T12:49:19,755 copying src/lhc/entities/sequence/dicodonshuffle.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/sequence 2024-05-07T12:49:19,757 copying src/lhc/entities/sequence/reverse_complement.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/sequence 2024-05-07T12:49:19,759 copying src/lhc/entities/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/sequence 2024-05-07T12:49:19,761 copying src/lhc/entities/sequence/sequence_generator.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/sequence 2024-05-07T12:49:19,763 creating build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment 2024-05-07T12:49:19,764 copying src/lhc/entities/multiple_alignment/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment 2024-05-07T12:49:19,766 copying src/lhc/entities/multiple_alignment/score.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment 2024-05-07T12:49:19,767 copying src/lhc/entities/multiple_alignment/character_map.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment 2024-05-07T12:49:19,769 copying src/lhc/entities/multiple_alignment/aligner.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment 2024-05-07T12:49:19,771 copying src/lhc/entities/multiple_alignment/local_alignment.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment 2024-05-07T12:49:19,773 copying src/lhc/entities/multiple_alignment/alignment.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment 2024-05-07T12:49:19,774 copying src/lhc/entities/multiple_alignment/semiglobal_alignment.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment 2024-05-07T12:49:19,776 copying src/lhc/entities/multiple_alignment/global_alignment.py -> build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment 2024-05-07T12:49:19,778 creating build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,779 copying src/lhc/cli/sequences/split.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,782 copying src/lhc/cli/sequences/reverse_complement.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,783 copying src/lhc/cli/sequences/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,785 copying src/lhc/cli/sequences/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,787 copying src/lhc/cli/sequences/interleave.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,788 copying src/lhc/cli/sequences/filter.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,790 copying src/lhc/cli/sequences/unique.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,791 copying src/lhc/cli/sequences/extract.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,794 copying src/lhc/cli/sequences/rmdup.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,795 copying src/lhc/cli/sequences/barcode_filter.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,797 copying src/lhc/cli/sequences/stat_.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,799 copying src/lhc/cli/sequences/view.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,800 copying src/lhc/cli/sequences/barcode_split.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/sequences 2024-05-07T12:49:19,803 creating build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,804 copying src/lhc/cli/loci/stats.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,806 copying src/lhc/cli/loci/difference.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,808 copying src/lhc/cli/loci/flank.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,810 copying src/lhc/cli/loci/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,812 copying src/lhc/cli/loci/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,813 copying src/lhc/cli/loci/deduplicate.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,815 copying src/lhc/cli/loci/filter.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,817 copying src/lhc/cli/loci/intersect.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,819 copying src/lhc/cli/loci/extend.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,820 copying src/lhc/cli/loci/kmer_filter.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,822 copying src/lhc/cli/loci/closest.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,824 copying src/lhc/cli/loci/view.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,826 copying src/lhc/cli/loci/union.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,827 copying src/lhc/cli/loci/generate.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/loci 2024-05-07T12:49:19,829 creating build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments 2024-05-07T12:49:19,830 copying src/lhc/cli/multiple_alignments/trim_gaps.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments 2024-05-07T12:49:19,832 copying src/lhc/cli/multiple_alignments/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments 2024-05-07T12:49:19,834 copying src/lhc/cli/multiple_alignments/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments 2024-05-07T12:49:19,835 copying src/lhc/cli/multiple_alignments/align_pairwise.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments 2024-05-07T12:49:19,837 copying src/lhc/cli/multiple_alignments/get_consensus.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments 2024-05-07T12:49:19,839 copying src/lhc/cli/multiple_alignments/extract.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments 2024-05-07T12:49:19,841 copying src/lhc/cli/multiple_alignments/call_variants.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments 2024-05-07T12:49:19,844 creating build/lib.linux-armv7l-cpython-311/lhc/cli/alignments 2024-05-07T12:49:19,845 copying src/lhc/cli/alignments/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/alignments 2024-05-07T12:49:19,846 copying src/lhc/cli/alignments/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/alignments 2024-05-07T12:49:19,848 copying src/lhc/cli/alignments/cs_to_table.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/alignments 2024-05-07T12:49:19,849 copying src/lhc/cli/alignments/mismatch_filter.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/alignments 2024-05-07T12:49:19,851 copying src/lhc/cli/alignments/strand.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/alignments 2024-05-07T12:49:19,853 creating build/lib.linux-armv7l-cpython-311/lhc/cli/variants 2024-05-07T12:49:19,854 copying src/lhc/cli/variants/compare.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/variants 2024-05-07T12:49:19,856 copying src/lhc/cli/variants/shift.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/variants 2024-05-07T12:49:19,858 copying src/lhc/cli/variants/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/variants 2024-05-07T12:49:19,859 copying src/lhc/cli/variants/trim_alt.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/variants 2024-05-07T12:49:19,861 copying src/lhc/cli/variants/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/variants 2024-05-07T12:49:19,862 copying src/lhc/cli/variants/filter.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/variants 2024-05-07T12:49:19,864 copying src/lhc/cli/variants/split_alt.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/variants 2024-05-07T12:49:19,866 copying src/lhc/cli/variants/merge.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/variants 2024-05-07T12:49:19,868 copying src/lhc/cli/variants/diff.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/variants 2024-05-07T12:49:19,870 copying src/lhc/cli/variants/annotate.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/variants 2024-05-07T12:49:19,873 copying src/lhc/cli/variants/sample.py -> build/lib.linux-armv7l-cpython-311/lhc/cli/variants 2024-05-07T12:49:19,875 creating build/lib.linux-armv7l-cpython-311/lhc/io/locus 2024-05-07T12:49:19,876 copying src/lhc/io/locus/bed.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2024-05-07T12:49:19,878 copying src/lhc/io/locus/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2024-05-07T12:49:19,879 copying src/lhc/io/locus/paf.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2024-05-07T12:49:19,881 copying src/lhc/io/locus/repeat_masker.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2024-05-07T12:49:19,883 copying src/lhc/io/locus/gff.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2024-05-07T12:49:19,884 copying src/lhc/io/locus/sam.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2024-05-07T12:49:19,886 copying src/lhc/io/locus/region.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2024-05-07T12:49:19,887 copying src/lhc/io/locus/gtf.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2024-05-07T12:49:19,889 copying src/lhc/io/locus/locus_file.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2024-05-07T12:49:19,891 copying src/lhc/io/locus/gbk.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2024-05-07T12:49:19,893 copying src/lhc/io/locus/embl.py -> build/lib.linux-armv7l-cpython-311/lhc/io/locus 2024-05-07T12:49:19,895 creating build/lib.linux-armv7l-cpython-311/lhc/io/methpat 2024-05-07T12:49:19,896 copying src/lhc/io/methpat/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/methpat 2024-05-07T12:49:19,897 copying src/lhc/io/methpat/__main__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/methpat 2024-05-07T12:49:19,900 creating build/lib.linux-armv7l-cpython-311/lhc/io/variant 2024-05-07T12:49:19,901 copying src/lhc/io/variant/variant_file.py -> build/lib.linux-armv7l-cpython-311/lhc/io/variant 2024-05-07T12:49:19,902 copying src/lhc/io/variant/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/variant 2024-05-07T12:49:19,904 copying src/lhc/io/variant/vcf.py -> build/lib.linux-armv7l-cpython-311/lhc/io/variant 2024-05-07T12:49:19,906 copying src/lhc/io/variant/maf.py -> build/lib.linux-armv7l-cpython-311/lhc/io/variant 2024-05-07T12:49:19,908 creating build/lib.linux-armv7l-cpython-311/lhc/io/sequence 2024-05-07T12:49:19,909 copying src/lhc/io/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/sequence 2024-05-07T12:49:19,911 copying src/lhc/io/sequence/fastq.py -> build/lib.linux-armv7l-cpython-311/lhc/io/sequence 2024-05-07T12:49:19,912 copying src/lhc/io/sequence/sequence_file.py -> build/lib.linux-armv7l-cpython-311/lhc/io/sequence 2024-05-07T12:49:19,914 copying src/lhc/io/sequence/fasta.py -> build/lib.linux-armv7l-cpython-311/lhc/io/sequence 2024-05-07T12:49:19,916 copying src/lhc/io/sequence/embl.py -> build/lib.linux-armv7l-cpython-311/lhc/io/sequence 2024-05-07T12:49:19,918 creating build/lib.linux-armv7l-cpython-311/lhc/io/alignment 2024-05-07T12:49:19,919 copying src/lhc/io/alignment/alignment_file.py -> build/lib.linux-armv7l-cpython-311/lhc/io/alignment 2024-05-07T12:49:19,921 copying src/lhc/io/alignment/__init__.py -> build/lib.linux-armv7l-cpython-311/lhc/io/alignment 2024-05-07T12:49:19,923 copying src/lhc/io/alignment/table.py -> build/lib.linux-armv7l-cpython-311/lhc/io/alignment 2024-05-07T12:49:19,925 copying src/lhc/io/alignment/alignment.py -> build/lib.linux-armv7l-cpython-311/lhc/io/alignment 2024-05-07T12:49:19,927 copying src/lhc/io/alignment/clustal.py -> build/lib.linux-armv7l-cpython-311/lhc/io/alignment 2024-05-07T12:49:19,928 copying src/lhc/io/alignment/fasta.py -> build/lib.linux-armv7l-cpython-311/lhc/io/alignment 2024-05-07T12:49:19,930 creating build/lib.linux-armv7l-cpython-311/lhc/io/methpat/tools 2024-05-07T12:49:19,931 copying src/lhc/io/methpat/tools/extract_patterns.py -> build/lib.linux-armv7l-cpython-311/lhc/io/methpat/tools 2024-05-07T12:49:19,933 running egg_info 2024-05-07T12:49:19,937 writing src/lhc_python.egg-info/PKG-INFO 2024-05-07T12:49:19,941 writing dependency_links to src/lhc_python.egg-info/dependency_links.txt 2024-05-07T12:49:19,942 writing requirements to src/lhc_python.egg-info/requires.txt 2024-05-07T12:49:19,943 writing top-level names to src/lhc_python.egg-info/top_level.txt 2024-05-07T12:49:19,975 reading manifest file 'src/lhc_python.egg-info/SOURCES.txt' 2024-05-07T12:49:19,980 adding license file 'LICENSE.txt' 2024-05-07T12:49:19,988 writing manifest file 'src/lhc_python.egg-info/SOURCES.txt' 2024-05-07T12:49:20,002 copying src/lib/digen/digen.cpp -> build/lib.linux-armv7l-cpython-311/lib/digen 2024-05-07T12:49:20,004 copying src/lib/digen/digen.h -> build/lib.linux-armv7l-cpython-311/lib/digen 2024-05-07T12:49:20,006 copying src/lib/digen/digenmodule.cpp -> build/lib.linux-armv7l-cpython-311/lib/digen 2024-05-07T12:49:20,008 creating build/lib.linux-armv7l-cpython-311/lib/bitap 2024-05-07T12:49:20,009 copying src/lib/bitap/bitap.cpp -> build/lib.linux-armv7l-cpython-311/lib/bitap 2024-05-07T12:49:20,011 copying src/lib/bitap/bitap.h -> build/lib.linux-armv7l-cpython-311/lib/bitap 2024-05-07T12:49:20,013 copying src/lib/bitap/bitapmodule.cpp -> build/lib.linux-armv7l-cpython-311/lib/bitap 2024-05-07T12:49:20,015 creating build/lib.linux-armv7l-cpython-311/lhc/data 2024-05-07T12:49:20,016 copying src/lhc/data/Emolwt.dat -> build/lib.linux-armv7l-cpython-311/lhc/data 2024-05-07T12:49:20,018 copying src/lhc/data/gc.prt -> build/lib.linux-armv7l-cpython-311/lhc/data 2024-05-07T12:49:20,033 running build_ext 2024-05-07T12:49:20,040 building 'lhc.misc.digen' extension 2024-05-07T12:49:20,041 creating build/temp.linux-armv7l-cpython-311 2024-05-07T12:49:20,042 creating build/temp.linux-armv7l-cpython-311/src 2024-05-07T12:49:20,042 creating build/temp.linux-armv7l-cpython-311/src/lib 2024-05-07T12:49:20,043 creating build/temp.linux-armv7l-cpython-311/src/lib/digen 2024-05-07T12:49:20,044 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/lib/digen -I/usr/include/python3.11 -c src/lib/digen/digen.cpp -o build/temp.linux-armv7l-cpython-311/src/lib/digen/digen.o 2024-05-07T12:49:21,408 src/lib/digen/digen.cpp: In function ‘char* generate(const int*)’: 2024-05-07T12:49:21,409 src/lib/digen/digen.cpp:75:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-07T12:49:21,409 75 | if (strlen(cur->pth) == seq_len) { 2024-05-07T12:49:21,410 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2024-05-07T12:49:22,852 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/lib/digen -I/usr/include/python3.11 -c src/lib/digen/digenmodule.cpp -o build/temp.linux-armv7l-cpython-311/src/lib/digen/digenmodule.o 2024-05-07T12:49:25,119 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/lib/digen/digen.o build/temp.linux-armv7l-cpython-311/src/lib/digen/digenmodule.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/lhc/misc/digen.cpython-311-arm-linux-gnueabihf.so 2024-05-07T12:49:25,356 building 'lhc.misc.bitap' extension 2024-05-07T12:49:25,357 creating build/temp.linux-armv7l-cpython-311/src/lib/bitap 2024-05-07T12:49:25,358 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/lib/bitap -I/usr/include/python3.11 -c src/lib/bitap/bitap.cpp -o build/temp.linux-armv7l-cpython-311/src/lib/bitap/bitap.o 2024-05-07T12:49:25,479 src/lib/bitap/bitap.cpp: In function ‘int bitap(const char*, const char*)’: 2024-05-07T12:49:25,480 src/lib/bitap/bitap.cpp:24:32: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2024-05-07T12:49:25,481 24 | pattern_mask[pattern[i]] &= ~(1UL << i); 2024-05-07T12:49:25,482 | ~~~~~~~~~^ 2024-05-07T12:49:25,482 src/lib/bitap/bitap.cpp:28:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2024-05-07T12:49:25,483 28 | R |= pattern_mask[text[i]]; 2024-05-07T12:49:25,483 | ~~~~~~^ 2024-05-07T12:49:25,484 src/lib/bitap/bitap.cpp: In function ‘int fuzzy_bitap(const char*, const char*, int)’: 2024-05-07T12:49:25,484 src/lib/bitap/bitap.cpp:57:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2024-05-07T12:49:25,485 57 | pattern_mask[pattern[i]] &= ~(1UL << i); 2024-05-07T12:49:25,485 | ~~~~~~~~~^ 2024-05-07T12:49:25,486 src/lib/bitap/bitap.cpp:63:36: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2024-05-07T12:49:25,487 63 | R[0] |= pattern_mask[text[i]]; 2024-05-07T12:49:25,487 | ~~~~~~^ 2024-05-07T12:49:25,488 src/lib/bitap/bitap.cpp:69:58: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2024-05-07T12:49:25,488 69 | R[d] = (old_Rd1 & (R[d] | pattern_mask[text[i]])) << 1; 2024-05-07T12:49:25,489 | ~~~~~~^ 2024-05-07T12:49:25,642 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/lib/bitap -I/usr/include/python3.11 -c src/lib/bitap/bitapmodule.cpp -o build/temp.linux-armv7l-cpython-311/src/lib/bitap/bitapmodule.o 2024-05-07T12:49:25,977 src/lib/bitap/bitapmodule.cpp:42:24: warning: "/*" within comment [-Wcomment] 2024-05-07T12:49:25,977 42 | NULL, /*bitap_doc, /* module documentation, may be NULL */ 2024-05-07T12:49:25,978 | 2024-05-07T12:49:26,795 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/lib/bitap/bitap.o build/temp.linux-armv7l-cpython-311/src/lib/bitap/bitapmodule.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/lhc/misc/bitap.cpython-311-arm-linux-gnueabihf.so 2024-05-07T12:49:27,024 installing to build/bdist.linux-armv7l/wheel 2024-05-07T12:49:27,025 running install 2024-05-07T12:49:27,049 running install_lib 2024-05-07T12:49:27,053 creating build/bdist.linux-armv7l 2024-05-07T12:49:27,054 creating build/bdist.linux-armv7l/wheel 2024-05-07T12:49:27,055 creating build/bdist.linux-armv7l/wheel/lib 2024-05-07T12:49:27,057 creating build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T12:49:27,058 copying build/lib.linux-armv7l-cpython-311/lib/digen/__init__.py -> build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T12:49:27,059 copying build/lib.linux-armv7l-cpython-311/lib/digen/digen.cpp -> build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T12:49:27,062 copying build/lib.linux-armv7l-cpython-311/lib/digen/setup.py -> build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T12:49:27,064 copying build/lib.linux-armv7l-cpython-311/lib/digen/digen.py -> build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T12:49:27,066 copying build/lib.linux-armv7l-cpython-311/lib/digen/digen.h -> build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T12:49:27,067 copying build/lib.linux-armv7l-cpython-311/lib/digen/digenmodule.cpp -> build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T12:49:27,070 creating build/bdist.linux-armv7l/wheel/lib/bitap 2024-05-07T12:49:27,071 copying build/lib.linux-armv7l-cpython-311/lib/bitap/bitapmodule.cpp -> build/bdist.linux-armv7l/wheel/lib/bitap 2024-05-07T12:49:27,073 copying build/lib.linux-armv7l-cpython-311/lib/bitap/bitap.h -> build/bdist.linux-armv7l/wheel/lib/bitap 2024-05-07T12:49:27,075 copying build/lib.linux-armv7l-cpython-311/lib/bitap/bitap.cpp -> build/bdist.linux-armv7l/wheel/lib/bitap 2024-05-07T12:49:27,077 creating build/bdist.linux-armv7l/wheel/lhc 2024-05-07T12:49:27,079 creating build/bdist.linux-armv7l/wheel/lhc/itertools 2024-05-07T12:49:27,080 copying build/lib.linux-armv7l-cpython-311/lhc/itertools/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/itertools 2024-05-07T12:49:27,082 copying build/lib.linux-armv7l-cpython-311/lhc/itertools/merge_sorted.py -> build/bdist.linux-armv7l/wheel/lhc/itertools 2024-05-07T12:49:27,084 copying build/lib.linux-armv7l-cpython-311/lhc/itertools/chunked_iterator.py -> build/bdist.linux-armv7l/wheel/lhc/itertools 2024-05-07T12:49:27,085 copying build/lib.linux-armv7l-cpython-311/lhc/itertools/sorted_iterator_merger.py -> build/bdist.linux-armv7l/wheel/lhc/itertools 2024-05-07T12:49:27,087 copying build/lib.linux-armv7l-cpython-311/lhc/__init__.py -> build/bdist.linux-armv7l/wheel/lhc 2024-05-07T12:49:27,089 creating build/bdist.linux-armv7l/wheel/lhc/entities 2024-05-07T12:49:27,090 copying build/lib.linux-armv7l-cpython-311/lhc/entities/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities 2024-05-07T12:49:27,092 creating build/bdist.linux-armv7l/wheel/lhc/entities/locus 2024-05-07T12:49:27,093 copying build/lib.linux-armv7l-cpython-311/lhc/entities/locus/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities/locus 2024-05-07T12:49:27,094 copying build/lib.linux-armv7l-cpython-311/lhc/entities/locus/make_loci.py -> build/bdist.linux-armv7l/wheel/lhc/entities/locus 2024-05-07T12:49:27,097 creating build/bdist.linux-armv7l/wheel/lhc/entities/genomic_coordinate 2024-05-07T12:49:27,097 copying build/lib.linux-armv7l-cpython-311/lhc/entities/genomic_coordinate/nested_genomic_interval.py -> build/bdist.linux-armv7l/wheel/lhc/entities/genomic_coordinate 2024-05-07T12:49:27,100 copying build/lib.linux-armv7l-cpython-311/lhc/entities/genomic_coordinate/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities/genomic_coordinate 2024-05-07T12:49:27,101 copying build/lib.linux-armv7l-cpython-311/lhc/entities/genomic_coordinate/genomic_interval.py -> build/bdist.linux-armv7l/wheel/lhc/entities/genomic_coordinate 2024-05-07T12:49:27,103 copying build/lib.linux-armv7l-cpython-311/lhc/entities/genomic_coordinate/genomic_position.py -> build/bdist.linux-armv7l/wheel/lhc/entities/genomic_coordinate 2024-05-07T12:49:27,106 creating build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T12:49:27,107 copying build/lib.linux-armv7l-cpython-311/lhc/entities/variant/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T12:49:27,109 copying build/lib.linux-armv7l-cpython-311/lhc/entities/variant/merger.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T12:49:27,111 copying build/lib.linux-armv7l-cpython-311/lhc/entities/variant/amino_acid_variant.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T12:49:27,113 copying build/lib.linux-armv7l-cpython-311/lhc/entities/variant/codon_variant.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T12:49:27,115 copying build/lib.linux-armv7l-cpython-311/lhc/entities/variant/variant.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T12:49:27,117 copying build/lib.linux-armv7l-cpython-311/lhc/entities/variant/coding_variant.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T12:49:27,118 copying build/lib.linux-armv7l-cpython-311/lhc/entities/variant/variant_effect.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T12:49:27,121 creating build/bdist.linux-armv7l/wheel/lhc/entities/interval 2024-05-07T12:49:27,122 copying build/lib.linux-armv7l-cpython-311/lhc/entities/interval/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities/interval 2024-05-07T12:49:27,124 copying build/lib.linux-armv7l-cpython-311/lhc/entities/interval/interval.py -> build/bdist.linux-armv7l/wheel/lhc/entities/interval 2024-05-07T12:49:27,126 copying build/lib.linux-armv7l-cpython-311/lhc/entities/interval/binner.py -> build/bdist.linux-armv7l/wheel/lhc/entities/interval 2024-05-07T12:49:27,128 copying build/lib.linux-armv7l-cpython-311/lhc/entities/interval/set_operations.py -> build/bdist.linux-armv7l/wheel/lhc/entities/interval 2024-05-07T12:49:27,130 creating build/bdist.linux-armv7l/wheel/lhc/entities/sequence 2024-05-07T12:49:27,131 copying build/lib.linux-armv7l-cpython-311/lhc/entities/sequence/dicodonshuffle.py -> build/bdist.linux-armv7l/wheel/lhc/entities/sequence 2024-05-07T12:49:27,134 copying build/lib.linux-armv7l-cpython-311/lhc/entities/sequence/reverse_complement.py -> build/bdist.linux-armv7l/wheel/lhc/entities/sequence 2024-05-07T12:49:27,135 copying build/lib.linux-armv7l-cpython-311/lhc/entities/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities/sequence 2024-05-07T12:49:27,136 copying build/lib.linux-armv7l-cpython-311/lhc/entities/sequence/sequence_generator.py -> build/bdist.linux-armv7l/wheel/lhc/entities/sequence 2024-05-07T12:49:27,138 creating build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T12:49:27,139 copying build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T12:49:27,141 copying build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment/score.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T12:49:27,143 copying build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment/character_map.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T12:49:27,144 copying build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment/aligner.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T12:49:27,146 copying build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment/local_alignment.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T12:49:27,148 copying build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment/alignment.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T12:49:27,149 copying build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment/semiglobal_alignment.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T12:49:27,151 copying build/lib.linux-armv7l-cpython-311/lhc/entities/multiple_alignment/global_alignment.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T12:49:27,153 creating build/bdist.linux-armv7l/wheel/lhc/cli 2024-05-07T12:49:27,154 copying build/lib.linux-armv7l-cpython-311/lhc/cli/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/cli 2024-05-07T12:49:27,156 creating build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,157 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/split.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,159 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/reverse_complement.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,161 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,163 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/__main__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,164 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/interleave.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,166 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/filter.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,168 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/unique.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,170 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/extract.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,172 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/rmdup.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,174 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/barcode_filter.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,176 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/stat_.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,178 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/view.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,179 copying build/lib.linux-armv7l-cpython-311/lhc/cli/sequences/barcode_split.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T12:49:27,182 creating build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,183 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/stats.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,185 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/difference.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,187 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/flank.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,190 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,192 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/__main__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,193 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/deduplicate.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,195 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/filter.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,197 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/intersect.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,199 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/extend.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,201 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/kmer_filter.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,203 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/closest.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,205 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/view.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,207 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/union.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,209 copying build/lib.linux-armv7l-cpython-311/lhc/cli/loci/generate.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T12:49:27,212 creating build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T12:49:27,213 copying build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments/trim_gaps.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T12:49:27,216 copying build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T12:49:27,218 copying build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments/__main__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T12:49:27,220 copying build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments/align_pairwise.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T12:49:27,222 copying build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments/get_consensus.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T12:49:27,225 copying build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments/extract.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T12:49:27,227 copying build/lib.linux-armv7l-cpython-311/lhc/cli/multiple_alignments/call_variants.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T12:49:27,230 creating build/bdist.linux-armv7l/wheel/lhc/cli/alignments 2024-05-07T12:49:27,231 copying build/lib.linux-armv7l-cpython-311/lhc/cli/alignments/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/alignments 2024-05-07T12:49:27,235 copying build/lib.linux-armv7l-cpython-311/lhc/cli/alignments/__main__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/alignments 2024-05-07T12:49:27,452 copying build/lib.linux-armv7l-cpython-311/lhc/cli/alignments/cs_to_table.py -> build/bdist.linux-armv7l/wheel/lhc/cli/alignments 2024-05-07T12:49:27,455 copying build/lib.linux-armv7l-cpython-311/lhc/cli/alignments/mismatch_filter.py -> build/bdist.linux-armv7l/wheel/lhc/cli/alignments 2024-05-07T12:49:27,457 copying build/lib.linux-armv7l-cpython-311/lhc/cli/alignments/strand.py -> build/bdist.linux-armv7l/wheel/lhc/cli/alignments 2024-05-07T12:49:27,461 creating build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T12:49:27,462 copying build/lib.linux-armv7l-cpython-311/lhc/cli/variants/compare.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T12:49:27,465 copying build/lib.linux-armv7l-cpython-311/lhc/cli/variants/shift.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T12:49:27,468 copying build/lib.linux-armv7l-cpython-311/lhc/cli/variants/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T12:49:27,471 copying build/lib.linux-armv7l-cpython-311/lhc/cli/variants/trim_alt.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T12:49:27,474 copying build/lib.linux-armv7l-cpython-311/lhc/cli/variants/__main__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T12:49:27,476 copying build/lib.linux-armv7l-cpython-311/lhc/cli/variants/filter.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T12:49:27,479 copying build/lib.linux-armv7l-cpython-311/lhc/cli/variants/split_alt.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T12:49:27,482 copying build/lib.linux-armv7l-cpython-311/lhc/cli/variants/merge.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T12:49:27,486 copying build/lib.linux-armv7l-cpython-311/lhc/cli/variants/diff.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T12:49:27,488 copying build/lib.linux-armv7l-cpython-311/lhc/cli/variants/annotate.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T12:49:27,491 copying build/lib.linux-armv7l-cpython-311/lhc/cli/variants/sample.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T12:49:27,495 creating build/bdist.linux-armv7l/wheel/lhc/collections 2024-05-07T12:49:27,497 copying build/lib.linux-armv7l-cpython-311/lhc/collections/sequence_set.py -> build/bdist.linux-armv7l/wheel/lhc/collections 2024-05-07T12:49:27,500 copying build/lib.linux-armv7l-cpython-311/lhc/collections/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/collections 2024-05-07T12:49:27,503 copying build/lib.linux-armv7l-cpython-311/lhc/collections/interval_set.py -> build/bdist.linux-armv7l/wheel/lhc/collections 2024-05-07T12:49:27,506 copying build/lib.linux-armv7l-cpython-311/lhc/collections/tabix_file_wrapper.py -> build/bdist.linux-armv7l/wheel/lhc/collections 2024-05-07T12:49:27,508 copying build/lib.linux-armv7l-cpython-311/lhc/collections/one_pass_interval_set.py -> build/bdist.linux-armv7l/wheel/lhc/collections 2024-05-07T12:49:27,511 creating build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,512 copying build/lib.linux-armv7l-cpython-311/lhc/misc/kmer.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,515 copying build/lib.linux-armv7l-cpython-311/lhc/misc/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,517 copying build/lib.linux-armv7l-cpython-311/lhc/misc/iupac.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,519 copying build/lib.linux-armv7l-cpython-311/lhc/misc/string.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,521 copying build/lib.linux-armv7l-cpython-311/lhc/misc/genetic_code.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,524 copying build/lib.linux-armv7l-cpython-311/lhc/misc/reservoir.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,526 copying build/lib.linux-armv7l-cpython-311/lhc/misc/natural_key.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,529 copying build/lib.linux-armv7l-cpython-311/lhc/misc/tokeniser.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,531 copying build/lib.linux-armv7l-cpython-311/lhc/misc/argparse.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,533 copying build/lib.linux-armv7l-cpython-311/lhc/misc/digen.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,539 copying build/lib.linux-armv7l-cpython-311/lhc/misc/bitap.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,543 copying build/lib.linux-armv7l-cpython-311/lhc/misc/skew.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,546 copying build/lib.linux-armv7l-cpython-311/lhc/misc/performance_measures.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T12:49:27,550 creating build/bdist.linux-armv7l/wheel/lhc/io 2024-05-07T12:49:27,551 copying build/lib.linux-armv7l-cpython-311/lhc/io/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/io 2024-05-07T12:49:27,553 copying build/lib.linux-armv7l-cpython-311/lhc/io/filepool.py -> build/bdist.linux-armv7l/wheel/lhc/io 2024-05-07T12:49:27,556 copying build/lib.linux-armv7l-cpython-311/lhc/io/file.py -> build/bdist.linux-armv7l/wheel/lhc/io 2024-05-07T12:49:27,560 creating build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T12:49:27,561 copying build/lib.linux-armv7l-cpython-311/lhc/io/locus/bed.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T12:49:27,563 copying build/lib.linux-armv7l-cpython-311/lhc/io/locus/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T12:49:27,565 copying build/lib.linux-armv7l-cpython-311/lhc/io/locus/paf.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T12:49:27,568 copying build/lib.linux-armv7l-cpython-311/lhc/io/locus/repeat_masker.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T12:49:27,571 copying build/lib.linux-armv7l-cpython-311/lhc/io/locus/gff.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T12:49:27,574 copying build/lib.linux-armv7l-cpython-311/lhc/io/locus/sam.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T12:49:27,576 copying build/lib.linux-armv7l-cpython-311/lhc/io/locus/region.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T12:49:27,578 copying build/lib.linux-armv7l-cpython-311/lhc/io/locus/gtf.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T12:49:27,581 copying build/lib.linux-armv7l-cpython-311/lhc/io/locus/locus_file.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T12:49:27,584 copying build/lib.linux-armv7l-cpython-311/lhc/io/locus/gbk.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T12:49:27,586 copying build/lib.linux-armv7l-cpython-311/lhc/io/locus/embl.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T12:49:27,590 creating build/bdist.linux-armv7l/wheel/lhc/io/methpat 2024-05-07T12:49:27,591 copying build/lib.linux-armv7l-cpython-311/lhc/io/methpat/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/io/methpat 2024-05-07T12:49:27,593 copying build/lib.linux-armv7l-cpython-311/lhc/io/methpat/__main__.py -> build/bdist.linux-armv7l/wheel/lhc/io/methpat 2024-05-07T12:49:27,596 creating build/bdist.linux-armv7l/wheel/lhc/io/methpat/tools 2024-05-07T12:49:27,598 copying build/lib.linux-armv7l-cpython-311/lhc/io/methpat/tools/extract_patterns.py -> build/bdist.linux-armv7l/wheel/lhc/io/methpat/tools 2024-05-07T12:49:27,601 creating build/bdist.linux-armv7l/wheel/lhc/io/variant 2024-05-07T12:49:27,602 copying build/lib.linux-armv7l-cpython-311/lhc/io/variant/variant_file.py -> build/bdist.linux-armv7l/wheel/lhc/io/variant 2024-05-07T12:49:27,605 copying build/lib.linux-armv7l-cpython-311/lhc/io/variant/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/io/variant 2024-05-07T12:49:27,607 copying build/lib.linux-armv7l-cpython-311/lhc/io/variant/vcf.py -> build/bdist.linux-armv7l/wheel/lhc/io/variant 2024-05-07T12:49:27,609 copying build/lib.linux-armv7l-cpython-311/lhc/io/variant/maf.py -> build/bdist.linux-armv7l/wheel/lhc/io/variant 2024-05-07T12:49:27,611 copying build/lib.linux-armv7l-cpython-311/lhc/io/cut.py -> build/bdist.linux-armv7l/wheel/lhc/io 2024-05-07T12:49:27,614 creating build/bdist.linux-armv7l/wheel/lhc/io/sequence 2024-05-07T12:49:27,614 copying build/lib.linux-armv7l-cpython-311/lhc/io/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/io/sequence 2024-05-07T12:49:27,616 copying build/lib.linux-armv7l-cpython-311/lhc/io/sequence/fastq.py -> build/bdist.linux-armv7l/wheel/lhc/io/sequence 2024-05-07T12:49:27,618 copying build/lib.linux-armv7l-cpython-311/lhc/io/sequence/sequence_file.py -> build/bdist.linux-armv7l/wheel/lhc/io/sequence 2024-05-07T12:49:27,620 copying build/lib.linux-armv7l-cpython-311/lhc/io/sequence/fasta.py -> build/bdist.linux-armv7l/wheel/lhc/io/sequence 2024-05-07T12:49:27,622 copying build/lib.linux-armv7l-cpython-311/lhc/io/sequence/embl.py -> build/bdist.linux-armv7l/wheel/lhc/io/sequence 2024-05-07T12:49:27,624 creating build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T12:49:27,625 copying build/lib.linux-armv7l-cpython-311/lhc/io/alignment/alignment_file.py -> build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T12:49:27,627 copying build/lib.linux-armv7l-cpython-311/lhc/io/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T12:49:27,628 copying build/lib.linux-armv7l-cpython-311/lhc/io/alignment/table.py -> build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T12:49:27,630 copying build/lib.linux-armv7l-cpython-311/lhc/io/alignment/alignment.py -> build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T12:49:27,631 copying build/lib.linux-armv7l-cpython-311/lhc/io/alignment/clustal.py -> build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T12:49:27,633 copying build/lib.linux-armv7l-cpython-311/lhc/io/alignment/fasta.py -> build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T12:49:27,635 creating build/bdist.linux-armv7l/wheel/lhc/graph 2024-05-07T12:49:27,636 copying build/lib.linux-armv7l-cpython-311/lhc/graph/graph.py -> build/bdist.linux-armv7l/wheel/lhc/graph 2024-05-07T12:49:27,638 copying build/lib.linux-armv7l-cpython-311/lhc/graph/hyper_graph.py -> build/bdist.linux-armv7l/wheel/lhc/graph 2024-05-07T12:49:27,640 copying build/lib.linux-armv7l-cpython-311/lhc/graph/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/graph 2024-05-07T12:49:27,641 copying build/lib.linux-armv7l-cpython-311/lhc/graph/n_partite_graph.py -> build/bdist.linux-armv7l/wheel/lhc/graph 2024-05-07T12:49:27,643 copying build/lib.linux-armv7l-cpython-311/lhc/graph/n_partite_graph_printer.py -> build/bdist.linux-armv7l/wheel/lhc/graph 2024-05-07T12:49:27,645 creating build/bdist.linux-armv7l/wheel/lhc/data 2024-05-07T12:49:27,646 copying build/lib.linux-armv7l-cpython-311/lhc/data/Emolwt.dat -> build/bdist.linux-armv7l/wheel/lhc/data 2024-05-07T12:49:27,648 copying build/lib.linux-armv7l-cpython-311/lhc/data/gc.prt -> build/bdist.linux-armv7l/wheel/lhc/data 2024-05-07T12:49:27,650 running install_egg_info 2024-05-07T12:49:27,654 Copying src/lhc_python.egg-info to build/bdist.linux-armv7l/wheel/lhc_python-2.5.1-py3.11.egg-info 2024-05-07T12:49:27,665 running install_scripts 2024-05-07T12:49:27,714 creating build/bdist.linux-armv7l/wheel/lhc_python-2.5.1.dist-info/WHEEL 2024-05-07T12:49:27,716 creating '/tmp/pip-wheel-isnr5tr2/.tmp-dqmfwso0/lhc_python-2.5.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-07T12:49:27,719 adding 'lhc/__init__.py' 2024-05-07T12:49:27,720 adding 'lhc/cli/__init__.py' 2024-05-07T12:49:27,722 adding 'lhc/cli/alignments/__init__.py' 2024-05-07T12:49:27,723 adding 'lhc/cli/alignments/__main__.py' 2024-05-07T12:49:27,725 adding 'lhc/cli/alignments/cs_to_table.py' 2024-05-07T12:49:27,726 adding 'lhc/cli/alignments/mismatch_filter.py' 2024-05-07T12:49:27,727 adding 'lhc/cli/alignments/strand.py' 2024-05-07T12:49:27,729 adding 'lhc/cli/loci/__init__.py' 2024-05-07T12:49:27,730 adding 'lhc/cli/loci/__main__.py' 2024-05-07T12:49:27,731 adding 'lhc/cli/loci/closest.py' 2024-05-07T12:49:27,733 adding 'lhc/cli/loci/deduplicate.py' 2024-05-07T12:49:27,734 adding 'lhc/cli/loci/difference.py' 2024-05-07T12:49:27,735 adding 'lhc/cli/loci/extend.py' 2024-05-07T12:49:27,736 adding 'lhc/cli/loci/filter.py' 2024-05-07T12:49:27,738 adding 'lhc/cli/loci/flank.py' 2024-05-07T12:49:27,739 adding 'lhc/cli/loci/generate.py' 2024-05-07T12:49:27,740 adding 'lhc/cli/loci/intersect.py' 2024-05-07T12:49:27,745 adding 'lhc/cli/loci/kmer_filter.py' 2024-05-07T12:49:27,746 adding 'lhc/cli/loci/stats.py' 2024-05-07T12:49:27,747 adding 'lhc/cli/loci/union.py' 2024-05-07T12:49:27,748 adding 'lhc/cli/loci/view.py' 2024-05-07T12:49:27,750 adding 'lhc/cli/multiple_alignments/__init__.py' 2024-05-07T12:49:27,751 adding 'lhc/cli/multiple_alignments/__main__.py' 2024-05-07T12:49:27,752 adding 'lhc/cli/multiple_alignments/align_pairwise.py' 2024-05-07T12:49:27,754 adding 'lhc/cli/multiple_alignments/call_variants.py' 2024-05-07T12:49:27,755 adding 'lhc/cli/multiple_alignments/extract.py' 2024-05-07T12:49:27,756 adding 'lhc/cli/multiple_alignments/get_consensus.py' 2024-05-07T12:49:27,757 adding 'lhc/cli/multiple_alignments/trim_gaps.py' 2024-05-07T12:49:27,759 adding 'lhc/cli/sequences/__init__.py' 2024-05-07T12:49:27,760 adding 'lhc/cli/sequences/__main__.py' 2024-05-07T12:49:27,762 adding 'lhc/cli/sequences/barcode_filter.py' 2024-05-07T12:49:27,763 adding 'lhc/cli/sequences/barcode_split.py' 2024-05-07T12:49:27,765 adding 'lhc/cli/sequences/extract.py' 2024-05-07T12:49:27,766 adding 'lhc/cli/sequences/filter.py' 2024-05-07T12:49:27,767 adding 'lhc/cli/sequences/interleave.py' 2024-05-07T12:49:27,768 adding 'lhc/cli/sequences/reverse_complement.py' 2024-05-07T12:49:27,769 adding 'lhc/cli/sequences/rmdup.py' 2024-05-07T12:49:27,771 adding 'lhc/cli/sequences/split.py' 2024-05-07T12:49:27,772 adding 'lhc/cli/sequences/stat_.py' 2024-05-07T12:49:27,773 adding 'lhc/cli/sequences/unique.py' 2024-05-07T12:49:27,775 adding 'lhc/cli/sequences/view.py' 2024-05-07T12:49:27,776 adding 'lhc/cli/variants/__init__.py' 2024-05-07T12:49:27,778 adding 'lhc/cli/variants/__main__.py' 2024-05-07T12:49:27,779 adding 'lhc/cli/variants/annotate.py' 2024-05-07T12:49:27,780 adding 'lhc/cli/variants/compare.py' 2024-05-07T12:49:27,781 adding 'lhc/cli/variants/diff.py' 2024-05-07T12:49:27,783 adding 'lhc/cli/variants/filter.py' 2024-05-07T12:49:27,784 adding 'lhc/cli/variants/merge.py' 2024-05-07T12:49:27,785 adding 'lhc/cli/variants/sample.py' 2024-05-07T12:49:27,787 adding 'lhc/cli/variants/shift.py' 2024-05-07T12:49:27,788 adding 'lhc/cli/variants/split_alt.py' 2024-05-07T12:49:27,789 adding 'lhc/cli/variants/trim_alt.py' 2024-05-07T12:49:27,791 adding 'lhc/collections/__init__.py' 2024-05-07T12:49:27,792 adding 'lhc/collections/interval_set.py' 2024-05-07T12:49:27,793 adding 'lhc/collections/one_pass_interval_set.py' 2024-05-07T12:49:27,795 adding 'lhc/collections/sequence_set.py' 2024-05-07T12:49:27,796 adding 'lhc/collections/tabix_file_wrapper.py' 2024-05-07T12:49:27,797 adding 'lhc/data/Emolwt.dat' 2024-05-07T12:49:27,799 adding 'lhc/data/gc.prt' 2024-05-07T12:49:27,801 adding 'lhc/entities/__init__.py' 2024-05-07T12:49:27,803 adding 'lhc/entities/genomic_coordinate/__init__.py' 2024-05-07T12:49:27,804 adding 'lhc/entities/genomic_coordinate/genomic_interval.py' 2024-05-07T12:49:27,805 adding 'lhc/entities/genomic_coordinate/genomic_position.py' 2024-05-07T12:49:27,807 adding 'lhc/entities/genomic_coordinate/nested_genomic_interval.py' 2024-05-07T12:49:27,810 adding 'lhc/entities/interval/__init__.py' 2024-05-07T12:49:27,811 adding 'lhc/entities/interval/binner.py' 2024-05-07T12:49:27,812 adding 'lhc/entities/interval/interval.py' 2024-05-07T12:49:27,814 adding 'lhc/entities/interval/set_operations.py' 2024-05-07T12:49:27,815 adding 'lhc/entities/locus/__init__.py' 2024-05-07T12:49:27,817 adding 'lhc/entities/locus/make_loci.py' 2024-05-07T12:49:27,818 adding 'lhc/entities/multiple_alignment/__init__.py' 2024-05-07T12:49:27,819 adding 'lhc/entities/multiple_alignment/aligner.py' 2024-05-07T12:49:27,821 adding 'lhc/entities/multiple_alignment/alignment.py' 2024-05-07T12:49:27,822 adding 'lhc/entities/multiple_alignment/character_map.py' 2024-05-07T12:49:27,823 adding 'lhc/entities/multiple_alignment/global_alignment.py' 2024-05-07T12:49:27,824 adding 'lhc/entities/multiple_alignment/local_alignment.py' 2024-05-07T12:49:27,825 adding 'lhc/entities/multiple_alignment/score.py' 2024-05-07T12:49:27,827 adding 'lhc/entities/multiple_alignment/semiglobal_alignment.py' 2024-05-07T12:49:27,828 adding 'lhc/entities/sequence/__init__.py' 2024-05-07T12:49:27,830 adding 'lhc/entities/sequence/dicodonshuffle.py' 2024-05-07T12:49:27,831 adding 'lhc/entities/sequence/reverse_complement.py' 2024-05-07T12:49:27,833 adding 'lhc/entities/sequence/sequence_generator.py' 2024-05-07T12:49:27,835 adding 'lhc/entities/variant/__init__.py' 2024-05-07T12:49:27,836 adding 'lhc/entities/variant/amino_acid_variant.py' 2024-05-07T12:49:27,837 adding 'lhc/entities/variant/coding_variant.py' 2024-05-07T12:49:27,838 adding 'lhc/entities/variant/codon_variant.py' 2024-05-07T12:49:27,840 adding 'lhc/entities/variant/merger.py' 2024-05-07T12:49:27,841 adding 'lhc/entities/variant/variant.py' 2024-05-07T12:49:27,843 adding 'lhc/entities/variant/variant_effect.py' 2024-05-07T12:49:27,844 adding 'lhc/graph/__init__.py' 2024-05-07T12:49:27,846 adding 'lhc/graph/graph.py' 2024-05-07T12:49:27,847 adding 'lhc/graph/hyper_graph.py' 2024-05-07T12:49:27,848 adding 'lhc/graph/n_partite_graph.py' 2024-05-07T12:49:27,850 adding 'lhc/graph/n_partite_graph_printer.py' 2024-05-07T12:49:27,851 adding 'lhc/io/__init__.py' 2024-05-07T12:49:27,852 adding 'lhc/io/cut.py' 2024-05-07T12:49:27,854 adding 'lhc/io/file.py' 2024-05-07T12:49:27,855 adding 'lhc/io/filepool.py' 2024-05-07T12:49:27,857 adding 'lhc/io/alignment/__init__.py' 2024-05-07T12:49:27,858 adding 'lhc/io/alignment/alignment.py' 2024-05-07T12:49:27,859 adding 'lhc/io/alignment/alignment_file.py' 2024-05-07T12:49:27,860 adding 'lhc/io/alignment/clustal.py' 2024-05-07T12:49:27,861 adding 'lhc/io/alignment/fasta.py' 2024-05-07T12:49:27,863 adding 'lhc/io/alignment/table.py' 2024-05-07T12:49:27,864 adding 'lhc/io/locus/__init__.py' 2024-05-07T12:49:27,866 adding 'lhc/io/locus/bed.py' 2024-05-07T12:49:27,867 adding 'lhc/io/locus/embl.py' 2024-05-07T12:49:27,869 adding 'lhc/io/locus/gbk.py' 2024-05-07T12:49:27,870 adding 'lhc/io/locus/gff.py' 2024-05-07T12:49:27,871 adding 'lhc/io/locus/gtf.py' 2024-05-07T12:49:27,872 adding 'lhc/io/locus/locus_file.py' 2024-05-07T12:49:27,874 adding 'lhc/io/locus/paf.py' 2024-05-07T12:49:27,875 adding 'lhc/io/locus/region.py' 2024-05-07T12:49:27,876 adding 'lhc/io/locus/repeat_masker.py' 2024-05-07T12:49:27,877 adding 'lhc/io/locus/sam.py' 2024-05-07T12:49:27,879 adding 'lhc/io/methpat/__init__.py' 2024-05-07T12:49:27,881 adding 'lhc/io/methpat/__main__.py' 2024-05-07T12:49:27,882 adding 'lhc/io/methpat/tools/extract_patterns.py' 2024-05-07T12:49:27,884 adding 'lhc/io/sequence/__init__.py' 2024-05-07T12:49:27,885 adding 'lhc/io/sequence/embl.py' 2024-05-07T12:49:27,887 adding 'lhc/io/sequence/fasta.py' 2024-05-07T12:49:27,888 adding 'lhc/io/sequence/fastq.py' 2024-05-07T12:49:27,890 adding 'lhc/io/sequence/sequence_file.py' 2024-05-07T12:49:27,891 adding 'lhc/io/variant/__init__.py' 2024-05-07T12:49:27,893 adding 'lhc/io/variant/maf.py' 2024-05-07T12:49:27,894 adding 'lhc/io/variant/variant_file.py' 2024-05-07T12:49:27,896 adding 'lhc/io/variant/vcf.py' 2024-05-07T12:49:27,897 adding 'lhc/itertools/__init__.py' 2024-05-07T12:49:27,898 adding 'lhc/itertools/chunked_iterator.py' 2024-05-07T12:49:27,900 adding 'lhc/itertools/merge_sorted.py' 2024-05-07T12:49:27,902 adding 'lhc/itertools/sorted_iterator_merger.py' 2024-05-07T12:49:27,903 adding 'lhc/misc/__init__.py' 2024-05-07T12:49:27,904 adding 'lhc/misc/argparse.py' 2024-05-07T12:49:27,911 adding 'lhc/misc/bitap.cpython-311-arm-linux-gnueabihf.so' 2024-05-07T12:49:27,947 adding 'lhc/misc/digen.cpython-311-arm-linux-gnueabihf.so' 2024-05-07T12:49:27,950 adding 'lhc/misc/genetic_code.py' 2024-05-07T12:49:27,951 adding 'lhc/misc/iupac.py' 2024-05-07T12:49:27,952 adding 'lhc/misc/kmer.py' 2024-05-07T12:49:27,953 adding 'lhc/misc/natural_key.py' 2024-05-07T12:49:27,955 adding 'lhc/misc/performance_measures.py' 2024-05-07T12:49:27,956 adding 'lhc/misc/reservoir.py' 2024-05-07T12:49:27,957 adding 'lhc/misc/skew.py' 2024-05-07T12:49:27,958 adding 'lhc/misc/string.py' 2024-05-07T12:49:27,959 adding 'lhc/misc/tokeniser.py' 2024-05-07T12:49:27,962 adding 'lib/bitap/bitap.cpp' 2024-05-07T12:49:27,963 adding 'lib/bitap/bitap.h' 2024-05-07T12:49:27,964 adding 'lib/bitap/bitapmodule.cpp' 2024-05-07T12:49:27,966 adding 'lib/digen/__init__.py' 2024-05-07T12:49:27,967 adding 'lib/digen/digen.cpp' 2024-05-07T12:49:27,969 adding 'lib/digen/digen.h' 2024-05-07T12:49:27,970 adding 'lib/digen/digen.py' 2024-05-07T12:49:27,971 adding 'lib/digen/digenmodule.cpp' 2024-05-07T12:49:27,972 adding 'lib/digen/setup.py' 2024-05-07T12:49:27,975 adding 'lhc_python-2.5.1.dist-info/LICENSE.txt' 2024-05-07T12:49:27,979 adding 'lhc_python-2.5.1.dist-info/METADATA' 2024-05-07T12:49:27,980 adding 'lhc_python-2.5.1.dist-info/WHEEL' 2024-05-07T12:49:27,981 adding 'lhc_python-2.5.1.dist-info/top_level.txt' 2024-05-07T12:49:27,983 adding 'lhc_python-2.5.1.dist-info/RECORD' 2024-05-07T12:49:27,989 removing build/bdist.linux-armv7l/wheel 2024-05-07T12:49:28,152 Building wheel for lhc-python (pyproject.toml): finished with status 'done' 2024-05-07T12:49:28,162 Created wheel for lhc-python: filename=lhc_python-2.5.1-cp311-cp311-linux_armv7l.whl size=217609 sha256=b49521e87f8495142a486d8a89b8950bcc7634df9b1ad0a1ec9327956eb89160 2024-05-07T12:49:28,163 Stored in directory: /tmp/pip-ephem-wheel-cache-39pszv82/wheels/1c/b1/32/2cb6175483ac05e881f791da933749d872e4caf2b5b18ee712 2024-05-07T12:49:28,189 Successfully built lhc-python 2024-05-07T12:49:28,197 Removed build tracker: '/tmp/pip-build-tracker-po6lwxed'