2024-05-07T15:54:55,897 Created temporary directory: /tmp/pip-build-tracker-xausz0be 2024-05-07T15:54:55,899 Initialized build tracking at /tmp/pip-build-tracker-xausz0be 2024-05-07T15:54:55,899 Created build tracker: /tmp/pip-build-tracker-xausz0be 2024-05-07T15:54:55,899 Entered build tracker: /tmp/pip-build-tracker-xausz0be 2024-05-07T15:54:55,900 Created temporary directory: /tmp/pip-wheel-pw97671l 2024-05-07T15:54:55,904 Created temporary directory: /tmp/pip-ephem-wheel-cache-vpaekoy5 2024-05-07T15:54:55,928 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T15:54:55,932 2 location(s) to search for versions of lhc-python: 2024-05-07T15:54:55,932 * https://pypi.org/simple/lhc-python/ 2024-05-07T15:54:55,932 * https://www.piwheels.org/simple/lhc-python/ 2024-05-07T15:54:55,932 Fetching project page and analyzing links: https://pypi.org/simple/lhc-python/ 2024-05-07T15:54:55,933 Getting page https://pypi.org/simple/lhc-python/ 2024-05-07T15:54:55,934 Found index url https://pypi.org/simple/ 2024-05-07T15:54:55,986 Fetched page https://pypi.org/simple/lhc-python/ as application/vnd.pypi.simple.v1+json 2024-05-07T15:54:55,995 Found link https://files.pythonhosted.org/packages/20/4d/bcfad057cf7e5ed81328ef0610bc25252402409ca94ba348d5b5752eb976/lhc-python-1.1.1.zip (from https://pypi.org/simple/lhc-python/), version: 1.1.1 2024-05-07T15:54:55,995 Found link https://files.pythonhosted.org/packages/e7/a6/76eb4a8bab55d03b619571bc2116566506cc2e7ce7460f157143b2567850/lhc-python-1.1.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.2 2024-05-07T15:54:55,996 Found link https://files.pythonhosted.org/packages/03/2c/263a9b1a6156f88c8646c14b4c76dfe68db2acd3969f415360425a4a4c8b/lhc-python-1.1.4.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.4 2024-05-07T15:54:55,996 Found link https://files.pythonhosted.org/packages/77/15/0f7890596b67965f3756409e62171d917a41dff58add86e8bc8f0288d795/lhc-python-1.1.5.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.5 2024-05-07T15:54:55,996 Found link https://files.pythonhosted.org/packages/c9/54/dba9993c22f589d368dc6ceac40e97950a8c9d17752d56bdfcf4258b7ff3/lhc-python-1.1.6.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.1.6 2024-05-07T15:54:55,996 Found link https://files.pythonhosted.org/packages/3e/3e/3c07514aaed13cb82e26335ce97c335e9fd03c2722da0411a94c199aea2c/lhc-python-1.2.1.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.2.1 2024-05-07T15:54:55,997 Found link https://files.pythonhosted.org/packages/d8/5d/9c598e5688faddf029d1a3b937f6ef06a8f4dfaa658f2a02461a8f9bfefb/lhc-python-1.2.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.2.2 2024-05-07T15:54:55,997 Found link https://files.pythonhosted.org/packages/82/e4/1d8674b1606696a15c22d585321cdfb3fead9d53a04a2e627e1d2006510c/lhc-python-1.2.3.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.2.3 2024-05-07T15:54:55,997 Found link https://files.pythonhosted.org/packages/68/3c/136026b8d94f1983dd3e1a11e22e43ba1a88baf19eed7756aa91441870ea/lhc-python-1.2.4.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.2.4 2024-05-07T15:54:55,997 Found link https://files.pythonhosted.org/packages/75/3a/17b2c513588790b72061ecf327dcf2daa9986352435abbfd055dba94cbb6/lhc-python-1.2.5.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.2.5 2024-05-07T15:54:55,998 Found link https://files.pythonhosted.org/packages/fe/64/ff0d2736c9b9d9ee16e7c0b813af60f0fd08df14f3a443218def44d1c058/lhc-python-1.2.6.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.2.6 2024-05-07T15:54:55,998 Found link https://files.pythonhosted.org/packages/84/de/a1aa6cc1bd3566db41c3c3b88de5c4bdd732592b35bb67c7a8792a2a7a88/lhc-python-1.3.0.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.3.0 2024-05-07T15:54:55,998 Found link https://files.pythonhosted.org/packages/3a/38/d84ec655572e343a81204631f50228045dbb3db2529eb2f35c3698d12f11/lhc-python-1.3.1.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.3.1 2024-05-07T15:54:55,999 Found link https://files.pythonhosted.org/packages/fd/35/768692cb6aff68c22c18efa54610fcc4ed7b4d48f14a94c28884d89b6fc3/lhc-python-1.3.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.3.2 2024-05-07T15:54:55,999 Found link https://files.pythonhosted.org/packages/2f/70/b73294032b94f6bf7cbaf0dea795f7fd3b0881bbece358db24652231ce93/lhc-python-1.3.3.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.3.3 2024-05-07T15:54:55,999 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/2c/26/77838568e47ffec9240b9259358a56c5b28af39f38ce4ef6c491c3edcc22/lhc_python-1.3.3-py3.5.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T15:54:55,999 Found link https://files.pythonhosted.org/packages/08/2c/dbba954ea06f536e50cfbbc7f41c3cec0c404193bb935985f6d0c4c9be1a/lhc-python-1.3.4.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.3.4 2024-05-07T15:54:56,000 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d4/b8/b4b4fa3aae1d493035265fd30b39c5d40f6ab6ed8bef4efb4ec857ffef02/lhc_python-1.3.4-py3.5.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T15:54:56,000 Found link https://files.pythonhosted.org/packages/d0/8c/7d064ff887f1cc9c89002e33bcb238ba42f21457a03f5defedafbf5f3e84/lhc-python-1.3.5.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.3.5 2024-05-07T15:54:56,000 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e4/bc/9381491217ee2306d87c624a022767fbec8984b2086c21d713e8d660fc01/lhc_python-1.3.5-py3.5.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T15:54:56,000 Found link https://files.pythonhosted.org/packages/9e/5b/8e1c6837a3255f68777ee4910c4dad8b93421e1589be73c16e36c6ef83ac/lhc-python-1.3.6.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.3.6 2024-05-07T15:54:56,001 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/75/dc/c6160b3f63a92a02332629a2f15a7eb911ad2e6e7e0ec8a7edf88f06adb2/lhc_python-1.3.6-py3.5.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T15:54:56,001 Found link https://files.pythonhosted.org/packages/45/1d/44577910481a4abe2022825fb11b00be5125135b2cd5d55e6db13c4d556d/lhc-python-1.3.7.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.3.7 2024-05-07T15:54:56,001 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/2f/83/28f9a2102e5c350d533e22a45515a77d206aa49a94b0d5d1d1cc82e0c13b/lhc_python-1.3.7-py3.5.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T15:54:56,001 Found link https://files.pythonhosted.org/packages/37/38/b1b149ac23bc492b15e2a9dd3a4c376362539066e5db666a66176cf6f4f3/lhc-python-1.3.8.tar.gz (from https://pypi.org/simple/lhc-python/), version: 1.3.8 2024-05-07T15:54:56,002 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6e/44/24d29f0e7888ce4e1834b52b5f9f4caef18c97717edf45f96d4265e7b8a4/lhc_python-1.3.8-py3.5.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T15:54:56,002 Found link https://files.pythonhosted.org/packages/19/fc/90dc7b44dd7ea0789cb7b0fd427640f625d81e0637dfbca6249fc8af798d/lhc-python-2.0.0.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.0.0 2024-05-07T15:54:56,002 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/b3/64/2f8f58966544b89f1bd3b8cfafa26a4ac742076c0e72819de32425029f55/lhc_python-2.0.0-py3.6.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T15:54:56,002 Found link https://files.pythonhosted.org/packages/ae/0e/8efc8fc727e48b6bd11c4adc4f531fe189bc05a54ece043387679dfd1e2d/lhc-python-2.0.1.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.0.1 2024-05-07T15:54:56,002 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/66/74/899cef9cfd2c65edf648976329ec8ba0c69aaa7e942f8c0ea7974aecdbe7/lhc_python-2.0.1-py3.6.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T15:54:56,003 Found link https://files.pythonhosted.org/packages/e1/56/7a57ff27c70d6313160c509bae6c44c249933851e0089fc80977878dce33/lhc-python-2.0.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.0.2 2024-05-07T15:54:56,003 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/b2/43/4d3d6f66c39eb2ce7988d5093f266a5b7f48f5807a627144778697f18c3d/lhc_python-2.0.2-py3.6.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T15:54:56,003 Found link https://files.pythonhosted.org/packages/ce/b5/081d3442e7eb776a3d7f633a3b6155279368791b30ff36b2646f541cdf6a/lhc-python-2.0.3.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.0.3 2024-05-07T15:54:56,003 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0d/0b/dfcbd35dcc42a69971de088078c258f0be3c74518dc899a8291ebf434059/lhc_python-2.0.3-py3.6.egg (from https://pypi.org/simple/lhc-python/) 2024-05-07T15:54:56,004 Found link https://files.pythonhosted.org/packages/22/5c/c503283c44974ebb16c4dd828d20d22a5ca2590c2aaf394c7e19a8fb3ec3/lhc-python-2.1.2.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.2 2024-05-07T15:54:56,004 Found link https://files.pythonhosted.org/packages/84/46/1e7d026008a62d75f4d1f2472238aaff1f0640b56847cabff90fbeb5be52/lhc-python-2.1.3.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.3 2024-05-07T15:54:56,004 Found link https://files.pythonhosted.org/packages/22/1b/2b6c832c9daa4415fac59998f62d8550b5b27c7d58eaad7831d892c868c0/lhc-python-2.1.4.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.4 2024-05-07T15:54:56,005 Found link https://files.pythonhosted.org/packages/fb/37/c48870f38b0f8ef9e7176578ac19b147d029b4c803a215abba653200bc81/lhc-python-2.1.5.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.5 2024-05-07T15:54:56,005 Found link https://files.pythonhosted.org/packages/eb/d8/3643ac239d95d3aa912de2fa42ca9d19ace2c808fd6e3544c59fc3d42f5d/lhc-python-2.1.6.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.6 2024-05-07T15:54:56,005 Found link https://files.pythonhosted.org/packages/52/78/2f403e2cd2bb73bf29b6f5f18d22a3e50bb051c9364c47f4462b5efd5998/lhc-python-2.1.7.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.7 2024-05-07T15:54:56,005 Found link https://files.pythonhosted.org/packages/92/55/ea8060918c8217e3b94a5d060c8e520afbc2f0a5a0cc521e9353a63ba430/lhc-python-2.1.8.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.1.8 2024-05-07T15:54:56,006 Found link https://files.pythonhosted.org/packages/89/80/5c410402cd1616f21426cf8a67d4263bfe7c03328b36934e80578ebdeca0/lhc-python-2.2.0.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.2.0 2024-05-07T15:54:56,006 Found link https://files.pythonhosted.org/packages/2a/8b/c3ebd46c60800a5a6ff42dda3ea397b4ad67aae35d7c70478129c22d2595/lhc-python-2.3.0.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.3.0 2024-05-07T15:54:56,006 Found link https://files.pythonhosted.org/packages/35/65/0c81d0a68bce1ad009b36e2dcea7376b9b075cc3e0078d0c90a3e5b835aa/lhc-python-2.3.1.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.3.1 2024-05-07T15:54:56,006 Found link https://files.pythonhosted.org/packages/4b/24/689dfb21592cdbb2be8bf2875ff9bd6e1415977c72c59ba9aa31a2361b1a/lhc-python-2.5.0.tar.gz (from https://pypi.org/simple/lhc-python/), version: 2.5.0 2024-05-07T15:54:56,007 Found link https://files.pythonhosted.org/packages/13/b0/185d0d7e7efc96a3b76d9dabc6632073378e21436364271d36b7f3c2b145/lhc_python-2.5.1.tar.gz (from https://pypi.org/simple/lhc-python/) (requires-python:>=3.0), version: 2.5.1 2024-05-07T15:54:56,008 Fetching project page and analyzing links: https://www.piwheels.org/simple/lhc-python/ 2024-05-07T15:54:56,008 Getting page https://www.piwheels.org/simple/lhc-python/ 2024-05-07T15:54:56,009 Found index url https://www.piwheels.org/simple/ 2024-05-07T15:54:56,222 Fetched page https://www.piwheels.org/simple/lhc-python/ as text/html 2024-05-07T15:54:56,231 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-2.5.1-cp311-cp311-linux_armv6l.whl#sha256=b49521e87f8495142a486d8a89b8950bcc7634df9b1ad0a1ec9327956eb89160 (from https://www.piwheels.org/simple/lhc-python/) (requires-python:>=3.0) 2024-05-07T15:54:56,231 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-2.5.1-cp311-cp311-linux_armv7l.whl#sha256=b49521e87f8495142a486d8a89b8950bcc7634df9b1ad0a1ec9327956eb89160 (from https://www.piwheels.org/simple/lhc-python/) (requires-python:>=3.0) 2024-05-07T15:54:56,232 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-2.5.1-cp37-cp37m-linux_armv6l.whl#sha256=81b6feaac89e8b2d8b53b4c8817ebdc7264a3b605bcbba22cf5e13c94253ade6 (from https://www.piwheels.org/simple/lhc-python/) (requires-python:>=3.0) 2024-05-07T15:54:56,232 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-2.5.1-cp37-cp37m-linux_armv7l.whl#sha256=81b6feaac89e8b2d8b53b4c8817ebdc7264a3b605bcbba22cf5e13c94253ade6 (from https://www.piwheels.org/simple/lhc-python/) (requires-python:>=3.0) 2024-05-07T15:54:56,232 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp37-cp37m-linux_armv6l.whl#sha256=5f4be52dacdba47e8e187aa794ebf6c409a898befcbd9a4a1e1bc1b2e2d2b3b3 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,232 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp37-cp37m-linux_armv7l.whl#sha256=5f4be52dacdba47e8e187aa794ebf6c409a898befcbd9a4a1e1bc1b2e2d2b3b3 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,232 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b955e9687b1382d9e684fdb6d679bb6ae85d30d3937f37af4ff886151427db1c (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,233 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b955e9687b1382d9e684fdb6d679bb6ae85d30d3937f37af4ff886151427db1c (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,233 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp34-cp34m-linux_armv7l.whl#sha256=f71bbe1c1b28e0dfdb25d560edf25b694166ca13f7aa4042275f358a57021bbc (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,233 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-cp34-cp34m-linux_armv6l.whl#sha256=f71bbe1c1b28e0dfdb25d560edf25b694166ca13f7aa4042275f358a57021bbc (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,233 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-python-py3-none-any.whl#sha256=deb5c0ee519268ff09ca32fc2b3290795790aadd6a94266e3e4740405ca3860a (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,233 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-0.0.0-py3-none-any.whl#sha256=4e6ea2cdd256aff52b5c9f8be9561e908881fc9bd1410aeba0a6de7314943875 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,234 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.8-py3-none-any.whl#sha256=f9723dff85a195da072299de362ce59c8d78ad8e6f6ce3c50f0ad86f76dc1191 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,234 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.7-py3-none-any.whl#sha256=2e265c9621fce0bbf8256fd10eedc5702068b49cdad1c35ecf5472f636d71b6a (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,234 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.6-py3-none-any.whl#sha256=c9c7368cf2cf8c6bc41386185f20ee192bda870b2a8435396edebd0137a93deb (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,234 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.5-py3-none-any.whl#sha256=a7d94751ffac710ba149d64225d9baabe5483de0f2962e7d8e69693747c4d02f (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,234 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.4-py3-none-any.whl#sha256=4d6654477c0c4b950069859178d13e0cda55d662710788d85785127f835b56dd (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,235 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.3-py3-none-any.whl#sha256=f48dd77f42e9a1bce9b146c899672e708f821dd99a9387bc003ddb7bae7f85f5 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,235 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.2-py3-none-any.whl#sha256=35e2ae84128c5e5468e11b45074afffd45cc2cbcf67c85390e7da88c2e7d45fd (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,235 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.1-py3-none-any.whl#sha256=81d19c382e5b599d59572d40e693021169e5e1ac75d2a2fc01d121f4730cd0a1 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,236 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.3.0-py3-none-any.whl#sha256=5f8d7359e1266989d96923f003d01754bdf0ec69ca33c1090f90a02738891e2e (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,236 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.6-py3-none-any.whl#sha256=d298acc485624c198c5bbc63fde139cb0d68d3a0485689978db8389643b2234f (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,236 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.5-py3-none-any.whl#sha256=c2a95400b7accd32f33010761938fb7faa2d56c68a184b45905077eac5539acc (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,237 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.4-py3-none-any.whl#sha256=a27467fd63e9d8aa1b8bbafa2afdbeec1fa9ad4de10c42232f39dfdf58140fc1 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,237 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.3-py3-none-any.whl#sha256=95fd10f8114946d0853912946df0e975e89f7941f05fe76a536486df5d2eb2df (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,237 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.2-py3-none-any.whl#sha256=dcb66868d70a0f2278bc5581da822e48001a6ce2e942597e910a444401169977 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,237 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.2.1-py3-none-any.whl#sha256=cce46dbf75b349c6d1a1e07137fcb53d43db81db44cca36018feb51402d1ee63 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,238 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.1.6-py3-none-any.whl#sha256=186631a6f058bcea60cab0617672fbdf0622ca248f93fe4ba0fcd5b99e81e155 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,238 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.1.5-py3-none-any.whl#sha256=edfeded10bbaebc6d2ae8d7f2a884c6d3f5e6f5fecf24464876f924a3d1345f5 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,238 Skipping link: No binaries permitted for lhc-python: https://www.piwheels.org/simple/lhc-python/lhc_python-1.1.4-py3-none-any.whl#sha256=d32211a85640f4a17ff83662d611e5f83b67c896923f1375f71b638fa4d3b6d7 (from https://www.piwheels.org/simple/lhc-python/) 2024-05-07T15:54:56,239 Skipping link: not a file: https://www.piwheels.org/simple/lhc-python/ 2024-05-07T15:54:56,239 Skipping link: not a file: https://pypi.org/simple/lhc-python/ 2024-05-07T15:54:56,272 Given no hashes to check 1 links for project 'lhc-python': discarding no candidates 2024-05-07T15:54:56,296 Collecting lhc-python==2.5.1 2024-05-07T15:54:56,299 Created temporary directory: /tmp/pip-unpack-4qkas_f_ 2024-05-07T15:54:56,353 Downloading lhc_python-2.5.1.tar.gz (85 kB) 2024-05-07T15:54:56,688 Added lhc-python==2.5.1 from https://files.pythonhosted.org/packages/13/b0/185d0d7e7efc96a3b76d9dabc6632073378e21436364271d36b7f3c2b145/lhc_python-2.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-xausz0be' 2024-05-07T15:54:56,693 Created temporary directory: /tmp/pip-build-env-u3fw9bu_ 2024-05-07T15:54:56,703 Installing build dependencies: started 2024-05-07T15:54:56,704 Running command pip subprocess to install build dependencies 2024-05-07T15:54:57,910 Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2024-05-07T15:54:58,426 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T15:54:59,917 Collecting setuptools>=61.0.0 2024-05-07T15:55:00,114 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-07T15:55:00,396 Collecting wheel 2024-05-07T15:55:00,416 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-07T15:55:02,204 Installing collected packages: wheel, setuptools 2024-05-07T15:55:02,436 Creating /tmp/pip-build-env-u3fw9bu_/overlay/bin 2024-05-07T15:55:02,438 changing mode of /tmp/pip-build-env-u3fw9bu_/overlay/bin/wheel to 755 2024-05-07T15:55:05,641 Successfully installed setuptools-69.5.1 wheel-0.43.0 2024-05-07T15:55:06,105 Installing build dependencies: finished with status 'done' 2024-05-07T15:55:06,110 Getting requirements to build wheel: started 2024-05-07T15:55:06,111 Running command Getting requirements to build wheel 2024-05-07T15:55:07,021 running egg_info 2024-05-07T15:55:07,025 writing src/lhc_python.egg-info/PKG-INFO 2024-05-07T15:55:07,030 writing dependency_links to src/lhc_python.egg-info/dependency_links.txt 2024-05-07T15:55:07,032 writing requirements to src/lhc_python.egg-info/requires.txt 2024-05-07T15:55:07,033 writing top-level names to src/lhc_python.egg-info/top_level.txt 2024-05-07T15:55:07,088 reading manifest file 'src/lhc_python.egg-info/SOURCES.txt' 2024-05-07T15:55:07,093 adding license file 'LICENSE.txt' 2024-05-07T15:55:07,102 writing manifest file 'src/lhc_python.egg-info/SOURCES.txt' 2024-05-07T15:55:07,204 Getting requirements to build wheel: finished with status 'done' 2024-05-07T15:55:07,212 Created temporary directory: /tmp/pip-modern-metadata-q_k_ghmv 2024-05-07T15:55:07,215 Preparing metadata (pyproject.toml): started 2024-05-07T15:55:07,216 Running command Preparing metadata (pyproject.toml) 2024-05-07T15:55:08,030 running dist_info 2024-05-07T15:55:08,035 creating /tmp/pip-modern-metadata-q_k_ghmv/lhc_python.egg-info 2024-05-07T15:55:08,039 writing /tmp/pip-modern-metadata-q_k_ghmv/lhc_python.egg-info/PKG-INFO 2024-05-07T15:55:08,043 writing dependency_links to /tmp/pip-modern-metadata-q_k_ghmv/lhc_python.egg-info/dependency_links.txt 2024-05-07T15:55:08,045 writing requirements to /tmp/pip-modern-metadata-q_k_ghmv/lhc_python.egg-info/requires.txt 2024-05-07T15:55:08,046 writing top-level names to /tmp/pip-modern-metadata-q_k_ghmv/lhc_python.egg-info/top_level.txt 2024-05-07T15:55:08,048 writing manifest file '/tmp/pip-modern-metadata-q_k_ghmv/lhc_python.egg-info/SOURCES.txt' 2024-05-07T15:55:08,096 reading manifest file '/tmp/pip-modern-metadata-q_k_ghmv/lhc_python.egg-info/SOURCES.txt' 2024-05-07T15:55:08,098 adding license file 'LICENSE.txt' 2024-05-07T15:55:08,106 writing manifest file '/tmp/pip-modern-metadata-q_k_ghmv/lhc_python.egg-info/SOURCES.txt' 2024-05-07T15:55:08,107 creating '/tmp/pip-modern-metadata-q_k_ghmv/lhc_python-2.5.1.dist-info' 2024-05-07T15:55:08,245 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-07T15:55:08,253 Source in /tmp/pip-wheel-pw97671l/lhc-python_8f38eabb55434a658147d7fb3bad336a has version 2.5.1, which satisfies requirement lhc-python==2.5.1 from https://files.pythonhosted.org/packages/13/b0/185d0d7e7efc96a3b76d9dabc6632073378e21436364271d36b7f3c2b145/lhc_python-2.5.1.tar.gz 2024-05-07T15:55:08,254 Removed lhc-python==2.5.1 from https://files.pythonhosted.org/packages/13/b0/185d0d7e7efc96a3b76d9dabc6632073378e21436364271d36b7f3c2b145/lhc_python-2.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-xausz0be' 2024-05-07T15:55:08,262 Created temporary directory: /tmp/pip-unpack-uveghuqh 2024-05-07T15:55:08,262 Created temporary directory: /tmp/pip-unpack-evbxwn_x 2024-05-07T15:55:08,271 Building wheels for collected packages: lhc-python 2024-05-07T15:55:08,276 Created temporary directory: /tmp/pip-wheel-1w8rczoy 2024-05-07T15:55:08,276 Destination directory: /tmp/pip-wheel-1w8rczoy 2024-05-07T15:55:08,278 Building wheel for lhc-python (pyproject.toml): started 2024-05-07T15:55:08,279 Running command Building wheel for lhc-python (pyproject.toml) 2024-05-07T15:55:09,062 running bdist_wheel 2024-05-07T15:55:09,080 running build 2024-05-07T15:55:09,080 running build_py 2024-05-07T15:55:09,085 creating build 2024-05-07T15:55:09,086 creating build/lib.linux-armv7l-cpython-39 2024-05-07T15:55:09,086 creating build/lib.linux-armv7l-cpython-39/lhc 2024-05-07T15:55:09,088 copying src/lhc/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc 2024-05-07T15:55:09,090 creating build/lib.linux-armv7l-cpython-39/lib 2024-05-07T15:55:09,090 creating build/lib.linux-armv7l-cpython-39/lib/digen 2024-05-07T15:55:09,092 copying src/lib/digen/setup.py -> build/lib.linux-armv7l-cpython-39/lib/digen 2024-05-07T15:55:09,093 copying src/lib/digen/digen.py -> build/lib.linux-armv7l-cpython-39/lib/digen 2024-05-07T15:55:09,095 copying src/lib/digen/__init__.py -> build/lib.linux-armv7l-cpython-39/lib/digen 2024-05-07T15:55:09,097 creating build/lib.linux-armv7l-cpython-39/lhc/misc 2024-05-07T15:55:09,098 copying src/lhc/misc/performance_measures.py -> build/lib.linux-armv7l-cpython-39/lhc/misc 2024-05-07T15:55:09,100 copying src/lhc/misc/argparse.py -> build/lib.linux-armv7l-cpython-39/lhc/misc 2024-05-07T15:55:09,102 copying src/lhc/misc/natural_key.py -> build/lib.linux-armv7l-cpython-39/lhc/misc 2024-05-07T15:55:09,103 copying src/lhc/misc/string.py -> build/lib.linux-armv7l-cpython-39/lhc/misc 2024-05-07T15:55:09,105 copying src/lhc/misc/tokeniser.py -> build/lib.linux-armv7l-cpython-39/lhc/misc 2024-05-07T15:55:09,106 copying src/lhc/misc/reservoir.py -> build/lib.linux-armv7l-cpython-39/lhc/misc 2024-05-07T15:55:09,108 copying src/lhc/misc/kmer.py -> build/lib.linux-armv7l-cpython-39/lhc/misc 2024-05-07T15:55:09,110 copying src/lhc/misc/genetic_code.py -> build/lib.linux-armv7l-cpython-39/lhc/misc 2024-05-07T15:55:09,112 copying src/lhc/misc/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/misc 2024-05-07T15:55:09,113 copying src/lhc/misc/skew.py -> build/lib.linux-armv7l-cpython-39/lhc/misc 2024-05-07T15:55:09,115 copying src/lhc/misc/iupac.py -> build/lib.linux-armv7l-cpython-39/lhc/misc 2024-05-07T15:55:09,117 creating build/lib.linux-armv7l-cpython-39/lhc/graph 2024-05-07T15:55:09,118 copying src/lhc/graph/graph.py -> build/lib.linux-armv7l-cpython-39/lhc/graph 2024-05-07T15:55:09,120 copying src/lhc/graph/n_partite_graph.py -> build/lib.linux-armv7l-cpython-39/lhc/graph 2024-05-07T15:55:09,121 copying src/lhc/graph/n_partite_graph_printer.py -> build/lib.linux-armv7l-cpython-39/lhc/graph 2024-05-07T15:55:09,123 copying src/lhc/graph/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/graph 2024-05-07T15:55:09,125 copying src/lhc/graph/hyper_graph.py -> build/lib.linux-armv7l-cpython-39/lhc/graph 2024-05-07T15:55:09,127 creating build/lib.linux-armv7l-cpython-39/lhc/io 2024-05-07T15:55:09,128 copying src/lhc/io/file.py -> build/lib.linux-armv7l-cpython-39/lhc/io 2024-05-07T15:55:09,130 copying src/lhc/io/filepool.py -> build/lib.linux-armv7l-cpython-39/lhc/io 2024-05-07T15:55:09,131 copying src/lhc/io/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/io 2024-05-07T15:55:09,133 copying src/lhc/io/cut.py -> build/lib.linux-armv7l-cpython-39/lhc/io 2024-05-07T15:55:09,135 creating build/lib.linux-armv7l-cpython-39/lhc/entities 2024-05-07T15:55:09,136 copying src/lhc/entities/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/entities 2024-05-07T15:55:09,138 creating build/lib.linux-armv7l-cpython-39/lhc/cli 2024-05-07T15:55:09,139 copying src/lhc/cli/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/cli 2024-05-07T15:55:09,141 creating build/lib.linux-armv7l-cpython-39/lhc/collections 2024-05-07T15:55:09,142 copying src/lhc/collections/sequence_set.py -> build/lib.linux-armv7l-cpython-39/lhc/collections 2024-05-07T15:55:09,144 copying src/lhc/collections/interval_set.py -> build/lib.linux-armv7l-cpython-39/lhc/collections 2024-05-07T15:55:09,145 copying src/lhc/collections/one_pass_interval_set.py -> build/lib.linux-armv7l-cpython-39/lhc/collections 2024-05-07T15:55:09,147 copying src/lhc/collections/tabix_file_wrapper.py -> build/lib.linux-armv7l-cpython-39/lhc/collections 2024-05-07T15:55:09,149 copying src/lhc/collections/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/collections 2024-05-07T15:55:09,151 creating build/lib.linux-armv7l-cpython-39/lhc/itertools 2024-05-07T15:55:09,152 copying src/lhc/itertools/chunked_iterator.py -> build/lib.linux-armv7l-cpython-39/lhc/itertools 2024-05-07T15:55:09,154 copying src/lhc/itertools/sorted_iterator_merger.py -> build/lib.linux-armv7l-cpython-39/lhc/itertools 2024-05-07T15:55:09,155 copying src/lhc/itertools/merge_sorted.py -> build/lib.linux-armv7l-cpython-39/lhc/itertools 2024-05-07T15:55:09,157 copying src/lhc/itertools/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/itertools 2024-05-07T15:55:09,159 creating build/lib.linux-armv7l-cpython-39/lhc/io/alignment 2024-05-07T15:55:09,160 copying src/lhc/io/alignment/alignment.py -> build/lib.linux-armv7l-cpython-39/lhc/io/alignment 2024-05-07T15:55:09,162 copying src/lhc/io/alignment/fasta.py -> build/lib.linux-armv7l-cpython-39/lhc/io/alignment 2024-05-07T15:55:09,164 copying src/lhc/io/alignment/table.py -> build/lib.linux-armv7l-cpython-39/lhc/io/alignment 2024-05-07T15:55:09,166 copying src/lhc/io/alignment/alignment_file.py -> build/lib.linux-armv7l-cpython-39/lhc/io/alignment 2024-05-07T15:55:09,167 copying src/lhc/io/alignment/clustal.py -> build/lib.linux-armv7l-cpython-39/lhc/io/alignment 2024-05-07T15:55:09,169 copying src/lhc/io/alignment/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/io/alignment 2024-05-07T15:55:09,171 creating build/lib.linux-armv7l-cpython-39/lhc/io/locus 2024-05-07T15:55:09,172 copying src/lhc/io/locus/embl.py -> build/lib.linux-armv7l-cpython-39/lhc/io/locus 2024-05-07T15:55:09,174 copying src/lhc/io/locus/gtf.py -> build/lib.linux-armv7l-cpython-39/lhc/io/locus 2024-05-07T15:55:09,176 copying src/lhc/io/locus/region.py -> build/lib.linux-armv7l-cpython-39/lhc/io/locus 2024-05-07T15:55:09,178 copying src/lhc/io/locus/locus_file.py -> build/lib.linux-armv7l-cpython-39/lhc/io/locus 2024-05-07T15:55:09,179 copying src/lhc/io/locus/bed.py -> build/lib.linux-armv7l-cpython-39/lhc/io/locus 2024-05-07T15:55:09,181 copying src/lhc/io/locus/gff.py -> build/lib.linux-armv7l-cpython-39/lhc/io/locus 2024-05-07T15:55:09,183 copying src/lhc/io/locus/sam.py -> build/lib.linux-armv7l-cpython-39/lhc/io/locus 2024-05-07T15:55:09,184 copying src/lhc/io/locus/repeat_masker.py -> build/lib.linux-armv7l-cpython-39/lhc/io/locus 2024-05-07T15:55:09,186 copying src/lhc/io/locus/paf.py -> build/lib.linux-armv7l-cpython-39/lhc/io/locus 2024-05-07T15:55:09,188 copying src/lhc/io/locus/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/io/locus 2024-05-07T15:55:09,189 copying src/lhc/io/locus/gbk.py -> build/lib.linux-armv7l-cpython-39/lhc/io/locus 2024-05-07T15:55:09,192 creating build/lib.linux-armv7l-cpython-39/lhc/io/methpat 2024-05-07T15:55:09,193 copying src/lhc/io/methpat/__main__.py -> build/lib.linux-armv7l-cpython-39/lhc/io/methpat 2024-05-07T15:55:09,194 copying src/lhc/io/methpat/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/io/methpat 2024-05-07T15:55:09,196 creating build/lib.linux-armv7l-cpython-39/lhc/io/variant 2024-05-07T15:55:09,197 copying src/lhc/io/variant/vcf.py -> build/lib.linux-armv7l-cpython-39/lhc/io/variant 2024-05-07T15:55:09,199 copying src/lhc/io/variant/variant_file.py -> build/lib.linux-armv7l-cpython-39/lhc/io/variant 2024-05-07T15:55:09,201 copying src/lhc/io/variant/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/io/variant 2024-05-07T15:55:09,202 copying src/lhc/io/variant/maf.py -> build/lib.linux-armv7l-cpython-39/lhc/io/variant 2024-05-07T15:55:09,205 creating build/lib.linux-armv7l-cpython-39/lhc/io/sequence 2024-05-07T15:55:09,206 copying src/lhc/io/sequence/embl.py -> build/lib.linux-armv7l-cpython-39/lhc/io/sequence 2024-05-07T15:55:09,208 copying src/lhc/io/sequence/fasta.py -> build/lib.linux-armv7l-cpython-39/lhc/io/sequence 2024-05-07T15:55:09,209 copying src/lhc/io/sequence/sequence_file.py -> build/lib.linux-armv7l-cpython-39/lhc/io/sequence 2024-05-07T15:55:09,211 copying src/lhc/io/sequence/fastq.py -> build/lib.linux-armv7l-cpython-39/lhc/io/sequence 2024-05-07T15:55:09,213 copying src/lhc/io/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/io/sequence 2024-05-07T15:55:09,215 creating build/lib.linux-armv7l-cpython-39/lhc/io/methpat/tools 2024-05-07T15:55:09,216 copying src/lhc/io/methpat/tools/extract_patterns.py -> build/lib.linux-armv7l-cpython-39/lhc/io/methpat/tools 2024-05-07T15:55:09,218 creating build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment 2024-05-07T15:55:09,219 copying src/lhc/entities/multiple_alignment/score.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment 2024-05-07T15:55:09,221 copying src/lhc/entities/multiple_alignment/alignment.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment 2024-05-07T15:55:09,223 copying src/lhc/entities/multiple_alignment/character_map.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment 2024-05-07T15:55:09,225 copying src/lhc/entities/multiple_alignment/local_alignment.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment 2024-05-07T15:55:09,226 copying src/lhc/entities/multiple_alignment/aligner.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment 2024-05-07T15:55:09,228 copying src/lhc/entities/multiple_alignment/semiglobal_alignment.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment 2024-05-07T15:55:09,230 copying src/lhc/entities/multiple_alignment/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment 2024-05-07T15:55:09,231 copying src/lhc/entities/multiple_alignment/global_alignment.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment 2024-05-07T15:55:09,233 creating build/lib.linux-armv7l-cpython-39/lhc/entities/locus 2024-05-07T15:55:09,234 copying src/lhc/entities/locus/make_loci.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/locus 2024-05-07T15:55:09,236 copying src/lhc/entities/locus/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/locus 2024-05-07T15:55:09,238 creating build/lib.linux-armv7l-cpython-39/lhc/entities/interval 2024-05-07T15:55:09,239 copying src/lhc/entities/interval/set_operations.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/interval 2024-05-07T15:55:09,241 copying src/lhc/entities/interval/interval.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/interval 2024-05-07T15:55:09,243 copying src/lhc/entities/interval/binner.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/interval 2024-05-07T15:55:09,245 copying src/lhc/entities/interval/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/interval 2024-05-07T15:55:09,247 creating build/lib.linux-armv7l-cpython-39/lhc/entities/variant 2024-05-07T15:55:09,248 copying src/lhc/entities/variant/variant_effect.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/variant 2024-05-07T15:55:09,250 copying src/lhc/entities/variant/amino_acid_variant.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/variant 2024-05-07T15:55:09,252 copying src/lhc/entities/variant/codon_variant.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/variant 2024-05-07T15:55:09,254 copying src/lhc/entities/variant/merger.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/variant 2024-05-07T15:55:09,257 copying src/lhc/entities/variant/coding_variant.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/variant 2024-05-07T15:55:09,258 copying src/lhc/entities/variant/variant.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/variant 2024-05-07T15:55:09,260 copying src/lhc/entities/variant/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/variant 2024-05-07T15:55:09,262 creating build/lib.linux-armv7l-cpython-39/lhc/entities/sequence 2024-05-07T15:55:09,263 copying src/lhc/entities/sequence/sequence_generator.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/sequence 2024-05-07T15:55:09,265 copying src/lhc/entities/sequence/reverse_complement.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/sequence 2024-05-07T15:55:09,266 copying src/lhc/entities/sequence/dicodonshuffle.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/sequence 2024-05-07T15:55:09,269 copying src/lhc/entities/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/sequence 2024-05-07T15:55:09,271 creating build/lib.linux-armv7l-cpython-39/lhc/entities/genomic_coordinate 2024-05-07T15:55:09,272 copying src/lhc/entities/genomic_coordinate/genomic_interval.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/genomic_coordinate 2024-05-07T15:55:09,274 copying src/lhc/entities/genomic_coordinate/genomic_position.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/genomic_coordinate 2024-05-07T15:55:09,276 copying src/lhc/entities/genomic_coordinate/nested_genomic_interval.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/genomic_coordinate 2024-05-07T15:55:09,278 copying src/lhc/entities/genomic_coordinate/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/entities/genomic_coordinate 2024-05-07T15:55:09,280 creating build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,281 copying src/lhc/cli/sequences/barcode_split.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,284 copying src/lhc/cli/sequences/unique.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,285 copying src/lhc/cli/sequences/reverse_complement.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,287 copying src/lhc/cli/sequences/interleave.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,289 copying src/lhc/cli/sequences/extract.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,291 copying src/lhc/cli/sequences/__main__.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,293 copying src/lhc/cli/sequences/split.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,294 copying src/lhc/cli/sequences/stat_.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,296 copying src/lhc/cli/sequences/filter.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,298 copying src/lhc/cli/sequences/barcode_filter.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,300 copying src/lhc/cli/sequences/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,302 copying src/lhc/cli/sequences/rmdup.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,304 copying src/lhc/cli/sequences/view.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/sequences 2024-05-07T15:55:09,307 creating build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,308 copying src/lhc/cli/loci/extend.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,310 copying src/lhc/cli/loci/closest.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,312 copying src/lhc/cli/loci/__main__.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,314 copying src/lhc/cli/loci/stats.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,316 copying src/lhc/cli/loci/kmer_filter.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,318 copying src/lhc/cli/loci/generate.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,320 copying src/lhc/cli/loci/filter.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,322 copying src/lhc/cli/loci/deduplicate.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,324 copying src/lhc/cli/loci/difference.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,325 copying src/lhc/cli/loci/union.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,327 copying src/lhc/cli/loci/flank.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,329 copying src/lhc/cli/loci/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,331 copying src/lhc/cli/loci/intersect.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,332 copying src/lhc/cli/loci/view.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/loci 2024-05-07T15:55:09,335 creating build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments 2024-05-07T15:55:09,336 copying src/lhc/cli/multiple_alignments/call_variants.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments 2024-05-07T15:55:09,339 copying src/lhc/cli/multiple_alignments/trim_gaps.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments 2024-05-07T15:55:09,341 copying src/lhc/cli/multiple_alignments/get_consensus.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments 2024-05-07T15:55:09,343 copying src/lhc/cli/multiple_alignments/align_pairwise.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments 2024-05-07T15:55:09,345 copying src/lhc/cli/multiple_alignments/extract.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments 2024-05-07T15:55:09,347 copying src/lhc/cli/multiple_alignments/__main__.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments 2024-05-07T15:55:09,348 copying src/lhc/cli/multiple_alignments/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments 2024-05-07T15:55:09,351 creating build/lib.linux-armv7l-cpython-39/lhc/cli/variants 2024-05-07T15:55:09,352 copying src/lhc/cli/variants/shift.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/variants 2024-05-07T15:55:09,353 copying src/lhc/cli/variants/__main__.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/variants 2024-05-07T15:55:09,355 copying src/lhc/cli/variants/annotate.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/variants 2024-05-07T15:55:09,357 copying src/lhc/cli/variants/trim_alt.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/variants 2024-05-07T15:55:09,359 copying src/lhc/cli/variants/filter.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/variants 2024-05-07T15:55:09,361 copying src/lhc/cli/variants/split_alt.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/variants 2024-05-07T15:55:09,362 copying src/lhc/cli/variants/diff.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/variants 2024-05-07T15:55:09,364 copying src/lhc/cli/variants/sample.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/variants 2024-05-07T15:55:09,365 copying src/lhc/cli/variants/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/variants 2024-05-07T15:55:09,367 copying src/lhc/cli/variants/merge.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/variants 2024-05-07T15:55:09,368 copying src/lhc/cli/variants/compare.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/variants 2024-05-07T15:55:09,371 creating build/lib.linux-armv7l-cpython-39/lhc/cli/alignments 2024-05-07T15:55:09,372 copying src/lhc/cli/alignments/strand.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/alignments 2024-05-07T15:55:09,373 copying src/lhc/cli/alignments/mismatch_filter.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/alignments 2024-05-07T15:55:09,375 copying src/lhc/cli/alignments/__main__.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/alignments 2024-05-07T15:55:09,377 copying src/lhc/cli/alignments/cs_to_table.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/alignments 2024-05-07T15:55:09,378 copying src/lhc/cli/alignments/__init__.py -> build/lib.linux-armv7l-cpython-39/lhc/cli/alignments 2024-05-07T15:55:09,381 running egg_info 2024-05-07T15:55:09,384 writing src/lhc_python.egg-info/PKG-INFO 2024-05-07T15:55:09,388 writing dependency_links to src/lhc_python.egg-info/dependency_links.txt 2024-05-07T15:55:09,390 writing requirements to src/lhc_python.egg-info/requires.txt 2024-05-07T15:55:09,391 writing top-level names to src/lhc_python.egg-info/top_level.txt 2024-05-07T15:55:09,427 reading manifest file 'src/lhc_python.egg-info/SOURCES.txt' 2024-05-07T15:55:09,433 adding license file 'LICENSE.txt' 2024-05-07T15:55:09,442 writing manifest file 'src/lhc_python.egg-info/SOURCES.txt' 2024-05-07T15:55:09,460 creating build/lib.linux-armv7l-cpython-39/lib/bitap 2024-05-07T15:55:09,461 copying src/lib/bitap/bitap.cpp -> build/lib.linux-armv7l-cpython-39/lib/bitap 2024-05-07T15:55:09,463 copying src/lib/bitap/bitap.h -> build/lib.linux-armv7l-cpython-39/lib/bitap 2024-05-07T15:55:09,465 copying src/lib/bitap/bitapmodule.cpp -> build/lib.linux-armv7l-cpython-39/lib/bitap 2024-05-07T15:55:09,467 copying src/lib/digen/digen.cpp -> build/lib.linux-armv7l-cpython-39/lib/digen 2024-05-07T15:55:09,470 copying src/lib/digen/digen.h -> build/lib.linux-armv7l-cpython-39/lib/digen 2024-05-07T15:55:09,472 copying src/lib/digen/digenmodule.cpp -> build/lib.linux-armv7l-cpython-39/lib/digen 2024-05-07T15:55:09,474 creating build/lib.linux-armv7l-cpython-39/lhc/data 2024-05-07T15:55:09,475 copying src/lhc/data/Emolwt.dat -> build/lib.linux-armv7l-cpython-39/lhc/data 2024-05-07T15:55:09,478 copying src/lhc/data/gc.prt -> build/lib.linux-armv7l-cpython-39/lhc/data 2024-05-07T15:55:09,497 running build_ext 2024-05-07T15:55:09,505 building 'lhc.misc.digen' extension 2024-05-07T15:55:09,506 creating build/temp.linux-armv7l-cpython-39 2024-05-07T15:55:09,506 creating build/temp.linux-armv7l-cpython-39/src 2024-05-07T15:55:09,507 creating build/temp.linux-armv7l-cpython-39/src/lib 2024-05-07T15:55:09,508 creating build/temp.linux-armv7l-cpython-39/src/lib/digen 2024-05-07T15:55:09,509 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/lib/digen -I/usr/include/python3.9 -c src/lib/digen/digen.cpp -o build/temp.linux-armv7l-cpython-39/src/lib/digen/digen.o 2024-05-07T15:55:10,553 src/lib/digen/digen.cpp: In function ‘char* generate(const int*)’: 2024-05-07T15:55:10,553 src/lib/digen/digen.cpp:75:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-05-07T15:55:10,553 75 | if (strlen(cur->pth) == seq_len) { 2024-05-07T15:55:10,553 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2024-05-07T15:55:11,741 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/lib/digen -I/usr/include/python3.9 -c src/lib/digen/digenmodule.cpp -o build/temp.linux-armv7l-cpython-39/src/lib/digen/digenmodule.o 2024-05-07T15:55:13,191 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/lib/digen/digen.o build/temp.linux-armv7l-cpython-39/src/lib/digen/digenmodule.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/lhc/misc/digen.cpython-39-arm-linux-gnueabihf.so 2024-05-07T15:55:13,444 building 'lhc.misc.bitap' extension 2024-05-07T15:55:13,445 creating build/temp.linux-armv7l-cpython-39/src/lib/bitap 2024-05-07T15:55:13,446 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/lib/bitap -I/usr/include/python3.9 -c src/lib/bitap/bitap.cpp -o build/temp.linux-armv7l-cpython-39/src/lib/bitap/bitap.o 2024-05-07T15:55:13,553 src/lib/bitap/bitap.cpp: In function ‘int bitap(const char*, const char*)’: 2024-05-07T15:55:13,553 src/lib/bitap/bitap.cpp:24:32: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2024-05-07T15:55:13,553 24 | pattern_mask[pattern[i]] &= ~(1UL << i); 2024-05-07T15:55:13,553 | ~~~~~~~~~^ 2024-05-07T15:55:13,554 src/lib/bitap/bitap.cpp:28:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2024-05-07T15:55:13,554 28 | R |= pattern_mask[text[i]]; 2024-05-07T15:55:13,554 | ~~~~~~^ 2024-05-07T15:55:13,556 src/lib/bitap/bitap.cpp: In function ‘int fuzzy_bitap(const char*, const char*, int)’: 2024-05-07T15:55:13,556 src/lib/bitap/bitap.cpp:57:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2024-05-07T15:55:13,556 57 | pattern_mask[pattern[i]] &= ~(1UL << i); 2024-05-07T15:55:13,556 | ~~~~~~~~~^ 2024-05-07T15:55:13,557 src/lib/bitap/bitap.cpp:63:36: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2024-05-07T15:55:13,557 63 | R[0] |= pattern_mask[text[i]]; 2024-05-07T15:55:13,557 | ~~~~~~^ 2024-05-07T15:55:13,558 src/lib/bitap/bitap.cpp:69:58: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2024-05-07T15:55:13,558 69 | R[d] = (old_Rd1 & (R[d] | pattern_mask[text[i]])) << 1; 2024-05-07T15:55:13,558 | ~~~~~~^ 2024-05-07T15:55:13,699 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/lib/bitap -I/usr/include/python3.9 -c src/lib/bitap/bitapmodule.cpp -o build/temp.linux-armv7l-cpython-39/src/lib/bitap/bitapmodule.o 2024-05-07T15:55:13,948 src/lib/bitap/bitapmodule.cpp:42:24: warning: "/*" within comment [-Wcomment] 2024-05-07T15:55:13,949 42 | NULL, /*bitap_doc, /* module documentation, may be NULL */ 2024-05-07T15:55:13,949 | 2024-05-07T15:55:14,214 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/lib/bitap/bitap.o build/temp.linux-armv7l-cpython-39/src/lib/bitap/bitapmodule.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/lhc/misc/bitap.cpython-39-arm-linux-gnueabihf.so 2024-05-07T15:55:14,464 installing to build/bdist.linux-armv7l/wheel 2024-05-07T15:55:14,464 running install 2024-05-07T15:55:14,489 running install_lib 2024-05-07T15:55:14,494 creating build/bdist.linux-armv7l 2024-05-07T15:55:14,494 creating build/bdist.linux-armv7l/wheel 2024-05-07T15:55:14,496 creating build/bdist.linux-armv7l/wheel/lib 2024-05-07T15:55:14,497 creating build/bdist.linux-armv7l/wheel/lib/bitap 2024-05-07T15:55:14,498 copying build/lib.linux-armv7l-cpython-39/lib/bitap/bitapmodule.cpp -> build/bdist.linux-armv7l/wheel/lib/bitap 2024-05-07T15:55:14,500 copying build/lib.linux-armv7l-cpython-39/lib/bitap/bitap.cpp -> build/bdist.linux-armv7l/wheel/lib/bitap 2024-05-07T15:55:14,502 copying build/lib.linux-armv7l-cpython-39/lib/bitap/bitap.h -> build/bdist.linux-armv7l/wheel/lib/bitap 2024-05-07T15:55:14,504 creating build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T15:55:14,505 copying build/lib.linux-armv7l-cpython-39/lib/digen/digen.h -> build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T15:55:14,507 copying build/lib.linux-armv7l-cpython-39/lib/digen/digen.cpp -> build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T15:55:14,509 copying build/lib.linux-armv7l-cpython-39/lib/digen/setup.py -> build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T15:55:14,511 copying build/lib.linux-armv7l-cpython-39/lib/digen/digen.py -> build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T15:55:14,513 copying build/lib.linux-armv7l-cpython-39/lib/digen/__init__.py -> build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T15:55:14,514 copying build/lib.linux-armv7l-cpython-39/lib/digen/digenmodule.cpp -> build/bdist.linux-armv7l/wheel/lib/digen 2024-05-07T15:55:14,516 creating build/bdist.linux-armv7l/wheel/lhc 2024-05-07T15:55:14,517 creating build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,518 copying build/lib.linux-armv7l-cpython-39/lhc/misc/performance_measures.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,521 copying build/lib.linux-armv7l-cpython-39/lhc/misc/argparse.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,522 copying build/lib.linux-armv7l-cpython-39/lhc/misc/natural_key.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,524 copying build/lib.linux-armv7l-cpython-39/lhc/misc/string.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,525 copying build/lib.linux-armv7l-cpython-39/lhc/misc/tokeniser.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,527 copying build/lib.linux-armv7l-cpython-39/lhc/misc/reservoir.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,529 copying build/lib.linux-armv7l-cpython-39/lhc/misc/digen.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,536 copying build/lib.linux-armv7l-cpython-39/lhc/misc/kmer.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,538 copying build/lib.linux-armv7l-cpython-39/lhc/misc/genetic_code.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,540 copying build/lib.linux-armv7l-cpython-39/lhc/misc/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,542 copying build/lib.linux-armv7l-cpython-39/lhc/misc/skew.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,543 copying build/lib.linux-armv7l-cpython-39/lhc/misc/bitap.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,547 copying build/lib.linux-armv7l-cpython-39/lhc/misc/iupac.py -> build/bdist.linux-armv7l/wheel/lhc/misc 2024-05-07T15:55:14,549 creating build/bdist.linux-armv7l/wheel/lhc/graph 2024-05-07T15:55:14,550 copying build/lib.linux-armv7l-cpython-39/lhc/graph/graph.py -> build/bdist.linux-armv7l/wheel/lhc/graph 2024-05-07T15:55:14,552 copying build/lib.linux-armv7l-cpython-39/lhc/graph/n_partite_graph.py -> build/bdist.linux-armv7l/wheel/lhc/graph 2024-05-07T15:55:14,554 copying build/lib.linux-armv7l-cpython-39/lhc/graph/n_partite_graph_printer.py -> build/bdist.linux-armv7l/wheel/lhc/graph 2024-05-07T15:55:14,556 copying build/lib.linux-armv7l-cpython-39/lhc/graph/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/graph 2024-05-07T15:55:14,558 copying build/lib.linux-armv7l-cpython-39/lhc/graph/hyper_graph.py -> build/bdist.linux-armv7l/wheel/lhc/graph 2024-05-07T15:55:14,560 creating build/bdist.linux-armv7l/wheel/lhc/io 2024-05-07T15:55:14,561 copying build/lib.linux-armv7l-cpython-39/lhc/io/file.py -> build/bdist.linux-armv7l/wheel/lhc/io 2024-05-07T15:55:14,563 creating build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T15:55:14,564 copying build/lib.linux-armv7l-cpython-39/lhc/io/alignment/alignment.py -> build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T15:55:14,566 copying build/lib.linux-armv7l-cpython-39/lhc/io/alignment/fasta.py -> build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T15:55:14,568 copying build/lib.linux-armv7l-cpython-39/lhc/io/alignment/table.py -> build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T15:55:14,569 copying build/lib.linux-armv7l-cpython-39/lhc/io/alignment/alignment_file.py -> build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T15:55:14,571 copying build/lib.linux-armv7l-cpython-39/lhc/io/alignment/clustal.py -> build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T15:55:14,573 copying build/lib.linux-armv7l-cpython-39/lhc/io/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/io/alignment 2024-05-07T15:55:14,575 creating build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T15:55:14,576 copying build/lib.linux-armv7l-cpython-39/lhc/io/locus/embl.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T15:55:14,578 copying build/lib.linux-armv7l-cpython-39/lhc/io/locus/gtf.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T15:55:14,580 copying build/lib.linux-armv7l-cpython-39/lhc/io/locus/region.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T15:55:14,582 copying build/lib.linux-armv7l-cpython-39/lhc/io/locus/locus_file.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T15:55:14,584 copying build/lib.linux-armv7l-cpython-39/lhc/io/locus/bed.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T15:55:14,585 copying build/lib.linux-armv7l-cpython-39/lhc/io/locus/gff.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T15:55:14,587 copying build/lib.linux-armv7l-cpython-39/lhc/io/locus/sam.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T15:55:14,589 copying build/lib.linux-armv7l-cpython-39/lhc/io/locus/repeat_masker.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T15:55:14,590 copying build/lib.linux-armv7l-cpython-39/lhc/io/locus/paf.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T15:55:14,592 copying build/lib.linux-armv7l-cpython-39/lhc/io/locus/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T15:55:14,594 copying build/lib.linux-armv7l-cpython-39/lhc/io/locus/gbk.py -> build/bdist.linux-armv7l/wheel/lhc/io/locus 2024-05-07T15:55:14,597 creating build/bdist.linux-armv7l/wheel/lhc/io/methpat 2024-05-07T15:55:14,598 creating build/bdist.linux-armv7l/wheel/lhc/io/methpat/tools 2024-05-07T15:55:14,599 copying build/lib.linux-armv7l-cpython-39/lhc/io/methpat/tools/extract_patterns.py -> build/bdist.linux-armv7l/wheel/lhc/io/methpat/tools 2024-05-07T15:55:14,601 copying build/lib.linux-armv7l-cpython-39/lhc/io/methpat/__main__.py -> build/bdist.linux-armv7l/wheel/lhc/io/methpat 2024-05-07T15:55:14,602 copying build/lib.linux-armv7l-cpython-39/lhc/io/methpat/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/io/methpat 2024-05-07T15:55:14,604 copying build/lib.linux-armv7l-cpython-39/lhc/io/filepool.py -> build/bdist.linux-armv7l/wheel/lhc/io 2024-05-07T15:55:14,606 creating build/bdist.linux-armv7l/wheel/lhc/io/variant 2024-05-07T15:55:14,607 copying build/lib.linux-armv7l-cpython-39/lhc/io/variant/vcf.py -> build/bdist.linux-armv7l/wheel/lhc/io/variant 2024-05-07T15:55:14,609 copying build/lib.linux-armv7l-cpython-39/lhc/io/variant/variant_file.py -> build/bdist.linux-armv7l/wheel/lhc/io/variant 2024-05-07T15:55:14,610 copying build/lib.linux-armv7l-cpython-39/lhc/io/variant/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/io/variant 2024-05-07T15:55:14,612 copying build/lib.linux-armv7l-cpython-39/lhc/io/variant/maf.py -> build/bdist.linux-armv7l/wheel/lhc/io/variant 2024-05-07T15:55:14,614 creating build/bdist.linux-armv7l/wheel/lhc/io/sequence 2024-05-07T15:55:14,615 copying build/lib.linux-armv7l-cpython-39/lhc/io/sequence/embl.py -> build/bdist.linux-armv7l/wheel/lhc/io/sequence 2024-05-07T15:55:14,617 copying build/lib.linux-armv7l-cpython-39/lhc/io/sequence/fasta.py -> build/bdist.linux-armv7l/wheel/lhc/io/sequence 2024-05-07T15:55:14,619 copying build/lib.linux-armv7l-cpython-39/lhc/io/sequence/sequence_file.py -> build/bdist.linux-armv7l/wheel/lhc/io/sequence 2024-05-07T15:55:14,621 copying build/lib.linux-armv7l-cpython-39/lhc/io/sequence/fastq.py -> build/bdist.linux-armv7l/wheel/lhc/io/sequence 2024-05-07T15:55:14,622 copying build/lib.linux-armv7l-cpython-39/lhc/io/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/io/sequence 2024-05-07T15:55:14,624 copying build/lib.linux-armv7l-cpython-39/lhc/io/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/io 2024-05-07T15:55:14,626 copying build/lib.linux-armv7l-cpython-39/lhc/io/cut.py -> build/bdist.linux-armv7l/wheel/lhc/io 2024-05-07T15:55:14,628 creating build/bdist.linux-armv7l/wheel/lhc/entities 2024-05-07T15:55:14,629 creating build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T15:55:14,630 copying build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment/score.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T15:55:14,632 copying build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment/alignment.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T15:55:14,634 copying build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment/character_map.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T15:55:14,636 copying build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment/local_alignment.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T15:55:14,638 copying build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment/aligner.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T15:55:14,639 copying build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment/semiglobal_alignment.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T15:55:14,641 copying build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T15:55:14,643 copying build/lib.linux-armv7l-cpython-39/lhc/entities/multiple_alignment/global_alignment.py -> build/bdist.linux-armv7l/wheel/lhc/entities/multiple_alignment 2024-05-07T15:55:14,645 creating build/bdist.linux-armv7l/wheel/lhc/entities/locus 2024-05-07T15:55:14,646 copying build/lib.linux-armv7l-cpython-39/lhc/entities/locus/make_loci.py -> build/bdist.linux-armv7l/wheel/lhc/entities/locus 2024-05-07T15:55:14,648 copying build/lib.linux-armv7l-cpython-39/lhc/entities/locus/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities/locus 2024-05-07T15:55:14,650 creating build/bdist.linux-armv7l/wheel/lhc/entities/interval 2024-05-07T15:55:14,651 copying build/lib.linux-armv7l-cpython-39/lhc/entities/interval/set_operations.py -> build/bdist.linux-armv7l/wheel/lhc/entities/interval 2024-05-07T15:55:14,653 copying build/lib.linux-armv7l-cpython-39/lhc/entities/interval/interval.py -> build/bdist.linux-armv7l/wheel/lhc/entities/interval 2024-05-07T15:55:14,657 copying build/lib.linux-armv7l-cpython-39/lhc/entities/interval/binner.py -> build/bdist.linux-armv7l/wheel/lhc/entities/interval 2024-05-07T15:55:14,659 copying build/lib.linux-armv7l-cpython-39/lhc/entities/interval/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities/interval 2024-05-07T15:55:14,662 creating build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T15:55:14,663 copying build/lib.linux-armv7l-cpython-39/lhc/entities/variant/variant_effect.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T15:55:14,666 copying build/lib.linux-armv7l-cpython-39/lhc/entities/variant/amino_acid_variant.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T15:55:14,668 copying build/lib.linux-armv7l-cpython-39/lhc/entities/variant/codon_variant.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T15:55:14,670 copying build/lib.linux-armv7l-cpython-39/lhc/entities/variant/merger.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T15:55:14,673 copying build/lib.linux-armv7l-cpython-39/lhc/entities/variant/coding_variant.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T15:55:14,676 copying build/lib.linux-armv7l-cpython-39/lhc/entities/variant/variant.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T15:55:14,678 copying build/lib.linux-armv7l-cpython-39/lhc/entities/variant/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities/variant 2024-05-07T15:55:14,681 creating build/bdist.linux-armv7l/wheel/lhc/entities/sequence 2024-05-07T15:55:14,682 copying build/lib.linux-armv7l-cpython-39/lhc/entities/sequence/sequence_generator.py -> build/bdist.linux-armv7l/wheel/lhc/entities/sequence 2024-05-07T15:55:14,685 copying build/lib.linux-armv7l-cpython-39/lhc/entities/sequence/reverse_complement.py -> build/bdist.linux-armv7l/wheel/lhc/entities/sequence 2024-05-07T15:55:14,687 copying build/lib.linux-armv7l-cpython-39/lhc/entities/sequence/dicodonshuffle.py -> build/bdist.linux-armv7l/wheel/lhc/entities/sequence 2024-05-07T15:55:14,690 copying build/lib.linux-armv7l-cpython-39/lhc/entities/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities/sequence 2024-05-07T15:55:14,692 creating build/bdist.linux-armv7l/wheel/lhc/entities/genomic_coordinate 2024-05-07T15:55:14,693 copying build/lib.linux-armv7l-cpython-39/lhc/entities/genomic_coordinate/genomic_interval.py -> build/bdist.linux-armv7l/wheel/lhc/entities/genomic_coordinate 2024-05-07T15:55:14,697 copying build/lib.linux-armv7l-cpython-39/lhc/entities/genomic_coordinate/genomic_position.py -> build/bdist.linux-armv7l/wheel/lhc/entities/genomic_coordinate 2024-05-07T15:55:14,699 copying build/lib.linux-armv7l-cpython-39/lhc/entities/genomic_coordinate/nested_genomic_interval.py -> build/bdist.linux-armv7l/wheel/lhc/entities/genomic_coordinate 2024-05-07T15:55:14,701 copying build/lib.linux-armv7l-cpython-39/lhc/entities/genomic_coordinate/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities/genomic_coordinate 2024-05-07T15:55:14,703 copying build/lib.linux-armv7l-cpython-39/lhc/entities/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/entities 2024-05-07T15:55:14,706 creating build/bdist.linux-armv7l/wheel/lhc/cli 2024-05-07T15:55:14,708 creating build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,709 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/barcode_split.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,713 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/unique.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,715 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/reverse_complement.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,717 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/interleave.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,719 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/extract.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,722 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/__main__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,724 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/split.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,727 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/stat_.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,729 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/filter.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,731 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/barcode_filter.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,733 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,736 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/rmdup.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,738 copying build/lib.linux-armv7l-cpython-39/lhc/cli/sequences/view.py -> build/bdist.linux-armv7l/wheel/lhc/cli/sequences 2024-05-07T15:55:14,741 creating build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,742 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/extend.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,744 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/closest.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,746 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/__main__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,749 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/stats.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,751 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/kmer_filter.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,752 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/generate.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,754 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/filter.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,756 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/deduplicate.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,758 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/difference.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,759 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/union.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,761 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/flank.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,763 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,764 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/intersect.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,766 copying build/lib.linux-armv7l-cpython-39/lhc/cli/loci/view.py -> build/bdist.linux-armv7l/wheel/lhc/cli/loci 2024-05-07T15:55:14,768 creating build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T15:55:14,769 copying build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments/call_variants.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T15:55:14,772 copying build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments/trim_gaps.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T15:55:14,773 copying build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments/get_consensus.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T15:55:14,775 copying build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments/align_pairwise.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T15:55:14,777 copying build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments/extract.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T15:55:14,779 copying build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments/__main__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T15:55:14,781 copying build/lib.linux-armv7l-cpython-39/lhc/cli/multiple_alignments/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/multiple_alignments 2024-05-07T15:55:14,783 creating build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T15:55:14,784 copying build/lib.linux-armv7l-cpython-39/lhc/cli/variants/shift.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T15:55:14,786 copying build/lib.linux-armv7l-cpython-39/lhc/cli/variants/__main__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T15:55:14,788 copying build/lib.linux-armv7l-cpython-39/lhc/cli/variants/annotate.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T15:55:14,789 copying build/lib.linux-armv7l-cpython-39/lhc/cli/variants/trim_alt.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T15:55:14,791 copying build/lib.linux-armv7l-cpython-39/lhc/cli/variants/filter.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T15:55:14,793 copying build/lib.linux-armv7l-cpython-39/lhc/cli/variants/split_alt.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T15:55:14,795 copying build/lib.linux-armv7l-cpython-39/lhc/cli/variants/diff.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T15:55:14,797 copying build/lib.linux-armv7l-cpython-39/lhc/cli/variants/sample.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T15:55:14,798 copying build/lib.linux-armv7l-cpython-39/lhc/cli/variants/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T15:55:14,800 copying build/lib.linux-armv7l-cpython-39/lhc/cli/variants/merge.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T15:55:14,801 copying build/lib.linux-armv7l-cpython-39/lhc/cli/variants/compare.py -> build/bdist.linux-armv7l/wheel/lhc/cli/variants 2024-05-07T15:55:14,804 creating build/bdist.linux-armv7l/wheel/lhc/cli/alignments 2024-05-07T15:55:14,804 copying build/lib.linux-armv7l-cpython-39/lhc/cli/alignments/strand.py -> build/bdist.linux-armv7l/wheel/lhc/cli/alignments 2024-05-07T15:55:14,806 copying build/lib.linux-armv7l-cpython-39/lhc/cli/alignments/mismatch_filter.py -> build/bdist.linux-armv7l/wheel/lhc/cli/alignments 2024-05-07T15:55:14,809 copying build/lib.linux-armv7l-cpython-39/lhc/cli/alignments/__main__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/alignments 2024-05-07T15:55:14,810 copying build/lib.linux-armv7l-cpython-39/lhc/cli/alignments/cs_to_table.py -> build/bdist.linux-armv7l/wheel/lhc/cli/alignments 2024-05-07T15:55:14,812 copying build/lib.linux-armv7l-cpython-39/lhc/cli/alignments/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/cli/alignments 2024-05-07T15:55:14,813 copying build/lib.linux-armv7l-cpython-39/lhc/cli/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/cli 2024-05-07T15:55:14,815 creating build/bdist.linux-armv7l/wheel/lhc/collections 2024-05-07T15:55:14,816 copying build/lib.linux-armv7l-cpython-39/lhc/collections/sequence_set.py -> build/bdist.linux-armv7l/wheel/lhc/collections 2024-05-07T15:55:14,818 copying build/lib.linux-armv7l-cpython-39/lhc/collections/interval_set.py -> build/bdist.linux-armv7l/wheel/lhc/collections 2024-05-07T15:55:14,819 copying build/lib.linux-armv7l-cpython-39/lhc/collections/one_pass_interval_set.py -> build/bdist.linux-armv7l/wheel/lhc/collections 2024-05-07T15:55:14,821 copying build/lib.linux-armv7l-cpython-39/lhc/collections/tabix_file_wrapper.py -> build/bdist.linux-armv7l/wheel/lhc/collections 2024-05-07T15:55:14,823 copying build/lib.linux-armv7l-cpython-39/lhc/collections/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/collections 2024-05-07T15:55:14,825 creating build/bdist.linux-armv7l/wheel/lhc/data 2024-05-07T15:55:14,826 copying build/lib.linux-armv7l-cpython-39/lhc/data/Emolwt.dat -> build/bdist.linux-armv7l/wheel/lhc/data 2024-05-07T15:55:14,828 copying build/lib.linux-armv7l-cpython-39/lhc/data/gc.prt -> build/bdist.linux-armv7l/wheel/lhc/data 2024-05-07T15:55:14,830 creating build/bdist.linux-armv7l/wheel/lhc/itertools 2024-05-07T15:55:14,831 copying build/lib.linux-armv7l-cpython-39/lhc/itertools/chunked_iterator.py -> build/bdist.linux-armv7l/wheel/lhc/itertools 2024-05-07T15:55:14,833 copying build/lib.linux-armv7l-cpython-39/lhc/itertools/sorted_iterator_merger.py -> build/bdist.linux-armv7l/wheel/lhc/itertools 2024-05-07T15:55:14,835 copying build/lib.linux-armv7l-cpython-39/lhc/itertools/merge_sorted.py -> build/bdist.linux-armv7l/wheel/lhc/itertools 2024-05-07T15:55:14,837 copying build/lib.linux-armv7l-cpython-39/lhc/itertools/__init__.py -> build/bdist.linux-armv7l/wheel/lhc/itertools 2024-05-07T15:55:14,838 copying build/lib.linux-armv7l-cpython-39/lhc/__init__.py -> build/bdist.linux-armv7l/wheel/lhc 2024-05-07T15:55:14,839 running install_egg_info 2024-05-07T15:55:14,844 Copying src/lhc_python.egg-info to build/bdist.linux-armv7l/wheel/lhc_python-2.5.1-py3.9.egg-info 2024-05-07T15:55:14,855 running install_scripts 2024-05-07T15:55:14,904 creating build/bdist.linux-armv7l/wheel/lhc_python-2.5.1.dist-info/WHEEL 2024-05-07T15:55:14,907 creating '/tmp/pip-wheel-1w8rczoy/.tmp-31auznap/lhc_python-2.5.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-07T15:55:14,909 adding 'lhc/__init__.py' 2024-05-07T15:55:14,911 adding 'lhc/cli/__init__.py' 2024-05-07T15:55:14,912 adding 'lhc/cli/alignments/__init__.py' 2024-05-07T15:55:14,914 adding 'lhc/cli/alignments/__main__.py' 2024-05-07T15:55:14,915 adding 'lhc/cli/alignments/cs_to_table.py' 2024-05-07T15:55:14,916 adding 'lhc/cli/alignments/mismatch_filter.py' 2024-05-07T15:55:14,918 adding 'lhc/cli/alignments/strand.py' 2024-05-07T15:55:14,919 adding 'lhc/cli/loci/__init__.py' 2024-05-07T15:55:14,920 adding 'lhc/cli/loci/__main__.py' 2024-05-07T15:55:14,922 adding 'lhc/cli/loci/closest.py' 2024-05-07T15:55:14,923 adding 'lhc/cli/loci/deduplicate.py' 2024-05-07T15:55:14,924 adding 'lhc/cli/loci/difference.py' 2024-05-07T15:55:14,926 adding 'lhc/cli/loci/extend.py' 2024-05-07T15:55:14,927 adding 'lhc/cli/loci/filter.py' 2024-05-07T15:55:14,928 adding 'lhc/cli/loci/flank.py' 2024-05-07T15:55:14,930 adding 'lhc/cli/loci/generate.py' 2024-05-07T15:55:14,931 adding 'lhc/cli/loci/intersect.py' 2024-05-07T15:55:14,932 adding 'lhc/cli/loci/kmer_filter.py' 2024-05-07T15:55:14,933 adding 'lhc/cli/loci/stats.py' 2024-05-07T15:55:14,935 adding 'lhc/cli/loci/union.py' 2024-05-07T15:55:14,936 adding 'lhc/cli/loci/view.py' 2024-05-07T15:55:14,938 adding 'lhc/cli/multiple_alignments/__init__.py' 2024-05-07T15:55:14,939 adding 'lhc/cli/multiple_alignments/__main__.py' 2024-05-07T15:55:14,940 adding 'lhc/cli/multiple_alignments/align_pairwise.py' 2024-05-07T15:55:14,942 adding 'lhc/cli/multiple_alignments/call_variants.py' 2024-05-07T15:55:14,943 adding 'lhc/cli/multiple_alignments/extract.py' 2024-05-07T15:55:14,944 adding 'lhc/cli/multiple_alignments/get_consensus.py' 2024-05-07T15:55:14,946 adding 'lhc/cli/multiple_alignments/trim_gaps.py' 2024-05-07T15:55:14,948 adding 'lhc/cli/sequences/__init__.py' 2024-05-07T15:55:14,949 adding 'lhc/cli/sequences/__main__.py' 2024-05-07T15:55:14,950 adding 'lhc/cli/sequences/barcode_filter.py' 2024-05-07T15:55:14,952 adding 'lhc/cli/sequences/barcode_split.py' 2024-05-07T15:55:14,953 adding 'lhc/cli/sequences/extract.py' 2024-05-07T15:55:14,955 adding 'lhc/cli/sequences/filter.py' 2024-05-07T15:55:14,956 adding 'lhc/cli/sequences/interleave.py' 2024-05-07T15:55:14,957 adding 'lhc/cli/sequences/reverse_complement.py' 2024-05-07T15:55:14,959 adding 'lhc/cli/sequences/rmdup.py' 2024-05-07T15:55:14,960 adding 'lhc/cli/sequences/split.py' 2024-05-07T15:55:14,961 adding 'lhc/cli/sequences/stat_.py' 2024-05-07T15:55:14,963 adding 'lhc/cli/sequences/unique.py' 2024-05-07T15:55:14,964 adding 'lhc/cli/sequences/view.py' 2024-05-07T15:55:14,965 adding 'lhc/cli/variants/__init__.py' 2024-05-07T15:55:14,967 adding 'lhc/cli/variants/__main__.py' 2024-05-07T15:55:14,968 adding 'lhc/cli/variants/annotate.py' 2024-05-07T15:55:14,969 adding 'lhc/cli/variants/compare.py' 2024-05-07T15:55:14,971 adding 'lhc/cli/variants/diff.py' 2024-05-07T15:55:14,972 adding 'lhc/cli/variants/filter.py' 2024-05-07T15:55:14,974 adding 'lhc/cli/variants/merge.py' 2024-05-07T15:55:14,975 adding 'lhc/cli/variants/sample.py' 2024-05-07T15:55:14,976 adding 'lhc/cli/variants/shift.py' 2024-05-07T15:55:14,977 adding 'lhc/cli/variants/split_alt.py' 2024-05-07T15:55:14,979 adding 'lhc/cli/variants/trim_alt.py' 2024-05-07T15:55:14,980 adding 'lhc/collections/__init__.py' 2024-05-07T15:55:14,982 adding 'lhc/collections/interval_set.py' 2024-05-07T15:55:14,984 adding 'lhc/collections/one_pass_interval_set.py' 2024-05-07T15:55:14,985 adding 'lhc/collections/sequence_set.py' 2024-05-07T15:55:14,986 adding 'lhc/collections/tabix_file_wrapper.py' 2024-05-07T15:55:14,988 adding 'lhc/data/Emolwt.dat' 2024-05-07T15:55:14,989 adding 'lhc/data/gc.prt' 2024-05-07T15:55:14,991 adding 'lhc/entities/__init__.py' 2024-05-07T15:55:14,993 adding 'lhc/entities/genomic_coordinate/__init__.py' 2024-05-07T15:55:14,994 adding 'lhc/entities/genomic_coordinate/genomic_interval.py' 2024-05-07T15:55:14,996 adding 'lhc/entities/genomic_coordinate/genomic_position.py' 2024-05-07T15:55:14,998 adding 'lhc/entities/genomic_coordinate/nested_genomic_interval.py' 2024-05-07T15:55:14,999 adding 'lhc/entities/interval/__init__.py' 2024-05-07T15:55:15,000 adding 'lhc/entities/interval/binner.py' 2024-05-07T15:55:15,002 adding 'lhc/entities/interval/interval.py' 2024-05-07T15:55:15,004 adding 'lhc/entities/interval/set_operations.py' 2024-05-07T15:55:15,005 adding 'lhc/entities/locus/__init__.py' 2024-05-07T15:55:15,007 adding 'lhc/entities/locus/make_loci.py' 2024-05-07T15:55:15,008 adding 'lhc/entities/multiple_alignment/__init__.py' 2024-05-07T15:55:15,010 adding 'lhc/entities/multiple_alignment/aligner.py' 2024-05-07T15:55:15,011 adding 'lhc/entities/multiple_alignment/alignment.py' 2024-05-07T15:55:15,012 adding 'lhc/entities/multiple_alignment/character_map.py' 2024-05-07T15:55:15,013 adding 'lhc/entities/multiple_alignment/global_alignment.py' 2024-05-07T15:55:15,015 adding 'lhc/entities/multiple_alignment/local_alignment.py' 2024-05-07T15:55:15,016 adding 'lhc/entities/multiple_alignment/score.py' 2024-05-07T15:55:15,018 adding 'lhc/entities/multiple_alignment/semiglobal_alignment.py' 2024-05-07T15:55:15,019 adding 'lhc/entities/sequence/__init__.py' 2024-05-07T15:55:15,021 adding 'lhc/entities/sequence/dicodonshuffle.py' 2024-05-07T15:55:15,023 adding 'lhc/entities/sequence/reverse_complement.py' 2024-05-07T15:55:15,024 adding 'lhc/entities/sequence/sequence_generator.py' 2024-05-07T15:55:15,026 adding 'lhc/entities/variant/__init__.py' 2024-05-07T15:55:15,027 adding 'lhc/entities/variant/amino_acid_variant.py' 2024-05-07T15:55:15,028 adding 'lhc/entities/variant/coding_variant.py' 2024-05-07T15:55:15,030 adding 'lhc/entities/variant/codon_variant.py' 2024-05-07T15:55:15,031 adding 'lhc/entities/variant/merger.py' 2024-05-07T15:55:15,033 adding 'lhc/entities/variant/variant.py' 2024-05-07T15:55:15,034 adding 'lhc/entities/variant/variant_effect.py' 2024-05-07T15:55:15,036 adding 'lhc/graph/__init__.py' 2024-05-07T15:55:15,037 adding 'lhc/graph/graph.py' 2024-05-07T15:55:15,039 adding 'lhc/graph/hyper_graph.py' 2024-05-07T15:55:15,040 adding 'lhc/graph/n_partite_graph.py' 2024-05-07T15:55:15,041 adding 'lhc/graph/n_partite_graph_printer.py' 2024-05-07T15:55:15,043 adding 'lhc/io/__init__.py' 2024-05-07T15:55:15,044 adding 'lhc/io/cut.py' 2024-05-07T15:55:15,045 adding 'lhc/io/file.py' 2024-05-07T15:55:15,046 adding 'lhc/io/filepool.py' 2024-05-07T15:55:15,048 adding 'lhc/io/alignment/__init__.py' 2024-05-07T15:55:15,049 adding 'lhc/io/alignment/alignment.py' 2024-05-07T15:55:15,051 adding 'lhc/io/alignment/alignment_file.py' 2024-05-07T15:55:15,052 adding 'lhc/io/alignment/clustal.py' 2024-05-07T15:55:15,053 adding 'lhc/io/alignment/fasta.py' 2024-05-07T15:55:15,054 adding 'lhc/io/alignment/table.py' 2024-05-07T15:55:15,056 adding 'lhc/io/locus/__init__.py' 2024-05-07T15:55:15,057 adding 'lhc/io/locus/bed.py' 2024-05-07T15:55:15,059 adding 'lhc/io/locus/embl.py' 2024-05-07T15:55:15,060 adding 'lhc/io/locus/gbk.py' 2024-05-07T15:55:15,062 adding 'lhc/io/locus/gff.py' 2024-05-07T15:55:15,063 adding 'lhc/io/locus/gtf.py' 2024-05-07T15:55:15,064 adding 'lhc/io/locus/locus_file.py' 2024-05-07T15:55:15,066 adding 'lhc/io/locus/paf.py' 2024-05-07T15:55:15,067 adding 'lhc/io/locus/region.py' 2024-05-07T15:55:15,068 adding 'lhc/io/locus/repeat_masker.py' 2024-05-07T15:55:15,069 adding 'lhc/io/locus/sam.py' 2024-05-07T15:55:15,071 adding 'lhc/io/methpat/__init__.py' 2024-05-07T15:55:15,072 adding 'lhc/io/methpat/__main__.py' 2024-05-07T15:55:15,074 adding 'lhc/io/methpat/tools/extract_patterns.py' 2024-05-07T15:55:15,075 adding 'lhc/io/sequence/__init__.py' 2024-05-07T15:55:15,077 adding 'lhc/io/sequence/embl.py' 2024-05-07T15:55:15,078 adding 'lhc/io/sequence/fasta.py' 2024-05-07T15:55:15,079 adding 'lhc/io/sequence/fastq.py' 2024-05-07T15:55:15,081 adding 'lhc/io/sequence/sequence_file.py' 2024-05-07T15:55:15,082 adding 'lhc/io/variant/__init__.py' 2024-05-07T15:55:15,084 adding 'lhc/io/variant/maf.py' 2024-05-07T15:55:15,085 adding 'lhc/io/variant/variant_file.py' 2024-05-07T15:55:15,087 adding 'lhc/io/variant/vcf.py' 2024-05-07T15:55:15,088 adding 'lhc/itertools/__init__.py' 2024-05-07T15:55:15,089 adding 'lhc/itertools/chunked_iterator.py' 2024-05-07T15:55:15,091 adding 'lhc/itertools/merge_sorted.py' 2024-05-07T15:55:15,092 adding 'lhc/itertools/sorted_iterator_merger.py' 2024-05-07T15:55:15,094 adding 'lhc/misc/__init__.py' 2024-05-07T15:55:15,095 adding 'lhc/misc/argparse.py' 2024-05-07T15:55:15,102 adding 'lhc/misc/bitap.cpython-39-arm-linux-gnueabihf.so' 2024-05-07T15:55:15,139 adding 'lhc/misc/digen.cpython-39-arm-linux-gnueabihf.so' 2024-05-07T15:55:15,142 adding 'lhc/misc/genetic_code.py' 2024-05-07T15:55:15,143 adding 'lhc/misc/iupac.py' 2024-05-07T15:55:15,144 adding 'lhc/misc/kmer.py' 2024-05-07T15:55:15,146 adding 'lhc/misc/natural_key.py' 2024-05-07T15:55:15,147 adding 'lhc/misc/performance_measures.py' 2024-05-07T15:55:15,148 adding 'lhc/misc/reservoir.py' 2024-05-07T15:55:15,150 adding 'lhc/misc/skew.py' 2024-05-07T15:55:15,151 adding 'lhc/misc/string.py' 2024-05-07T15:55:15,152 adding 'lhc/misc/tokeniser.py' 2024-05-07T15:55:15,155 adding 'lib/bitap/bitap.cpp' 2024-05-07T15:55:15,156 adding 'lib/bitap/bitap.h' 2024-05-07T15:55:15,158 adding 'lib/bitap/bitapmodule.cpp' 2024-05-07T15:55:15,159 adding 'lib/digen/__init__.py' 2024-05-07T15:55:15,161 adding 'lib/digen/digen.cpp' 2024-05-07T15:55:15,162 adding 'lib/digen/digen.h' 2024-05-07T15:55:15,164 adding 'lib/digen/digen.py' 2024-05-07T15:55:15,165 adding 'lib/digen/digenmodule.cpp' 2024-05-07T15:55:15,166 adding 'lib/digen/setup.py' 2024-05-07T15:55:15,169 adding 'lhc_python-2.5.1.dist-info/LICENSE.txt' 2024-05-07T15:55:15,172 adding 'lhc_python-2.5.1.dist-info/METADATA' 2024-05-07T15:55:15,174 adding 'lhc_python-2.5.1.dist-info/WHEEL' 2024-05-07T15:55:15,174 adding 'lhc_python-2.5.1.dist-info/top_level.txt' 2024-05-07T15:55:15,177 adding 'lhc_python-2.5.1.dist-info/RECORD' 2024-05-07T15:55:15,185 removing build/bdist.linux-armv7l/wheel 2024-05-07T15:55:15,340 Building wheel for lhc-python (pyproject.toml): finished with status 'done' 2024-05-07T15:55:15,349 Created wheel for lhc-python: filename=lhc_python-2.5.1-cp39-cp39-linux_armv7l.whl size=219940 sha256=ec08a6e2baf8665b285df527d46fa6c3ef851b1ac249d7acf26b29ad7122dfe4 2024-05-07T15:55:15,350 Stored in directory: /tmp/pip-ephem-wheel-cache-vpaekoy5/wheels/f3/60/b0/6099731e92b6ae2e72564fc434cc207c4d8ef2b0b784c48103 2024-05-07T15:55:15,372 Successfully built lhc-python 2024-05-07T15:55:15,381 Removed build tracker: '/tmp/pip-build-tracker-xausz0be'