2024-05-07T16:13:07,388 Created temporary directory: /tmp/pip-build-tracker-rrwbi0k1 2024-05-07T16:13:07,389 Initialized build tracking at /tmp/pip-build-tracker-rrwbi0k1 2024-05-07T16:13:07,389 Created build tracker: /tmp/pip-build-tracker-rrwbi0k1 2024-05-07T16:13:07,390 Entered build tracker: /tmp/pip-build-tracker-rrwbi0k1 2024-05-07T16:13:07,391 Created temporary directory: /tmp/pip-wheel-s17f2mw4 2024-05-07T16:13:07,394 Created temporary directory: /tmp/pip-ephem-wheel-cache-x1nmtcxg 2024-05-07T16:13:07,416 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T16:13:07,420 2 location(s) to search for versions of galaxy-tool-util: 2024-05-07T16:13:07,420 * https://pypi.org/simple/galaxy-tool-util/ 2024-05-07T16:13:07,420 * https://www.piwheels.org/simple/galaxy-tool-util/ 2024-05-07T16:13:07,421 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-tool-util/ 2024-05-07T16:13:07,421 Getting page 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https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev5-py2.py3-none-any.whl#sha256=07b2932888bc892f556721bca075c8af09f4bb395fcc33a3733d53868a183596 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-05-07T16:13:07,969 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev4-py2.py3-none-any.whl#sha256=1d8a6bb9e6104db4ea1cd468ccbf6a1d4e27c8b7c8e5a70c1ab09fed151c69b4 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-05-07T16:13:07,969 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev3-py2.py3-none-any.whl#sha256=4f37bcc38772266c1fe9eb830150eb8ab4ed7d027d3cd36c7615329c288f19e2 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-05-07T16:13:07,970 Skipping link: No binaries permitted for galaxy-tool-util: 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https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.1-py2.py3-none-any.whl#sha256=d2026a5c374a2206158eb34518473e14ded7c8a7f80d35c743ad31e75c5552bb (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-05-07T16:13:07,972 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0-py2.py3-none-any.whl#sha256=b9ae70a1744abff6164cab3304cf279e8683944b8cf2d95c26f6df7dfe9eb4c5 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-05-07T16:13:07,972 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev5-py2.py3-none-any.whl#sha256=f869574a225f69e7b51f6dba165eec4a58fe6c76d45924aecd9cc44e6513ad77 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-05-07T16:13:07,973 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev4-py2.py3-none-any.whl#sha256=f8287860bf6f524db3bd2d9096b97595aecea1a1e321065d5e36d971f5cd7b79 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-05-07T16:13:07,973 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev3-py2.py3-none-any.whl#sha256=c11cefb2c969b6e74729ae125693e5bf5401218df9615d22a68b3a5d8ce68122 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-05-07T16:13:07,974 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev2-py2.py3-none-any.whl#sha256=62e79b75dc27fa398c1e33a336b253d18de3fc94880fe567b3ee01fd081c6d5c (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-05-07T16:13:07,975 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev1-py2.py3-none-any.whl#sha256=7ff286949cb2c87a462ef1360b4ff58a3d0fc953dfde646f2b23bc9438d63ada (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-05-07T16:13:07,975 Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev0-py3-none-any.whl#sha256=f3257799e554be8d31f640710ed8672994323cbfda020a3648775c6d156fad4a (from https://www.piwheels.org/simple/galaxy-tool-util/) 2024-05-07T16:13:07,976 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-tool-util/ 2024-05-07T16:13:07,977 Skipping link: not a file: https://pypi.org/simple/galaxy-tool-util/ 2024-05-07T16:13:08,001 Given no hashes to check 1 links for project 'galaxy-tool-util': discarding no candidates 2024-05-07T16:13:08,019 Collecting galaxy-tool-util==24.0.2 2024-05-07T16:13:08,021 Created temporary directory: /tmp/pip-unpack-gveyor4o 2024-05-07T16:13:08,240 Downloading galaxy_tool_util-24.0.2.tar.gz (370 kB) 2024-05-07T16:13:08,671 Added galaxy-tool-util==24.0.2 from https://files.pythonhosted.org/packages/a5/05/d6e23f3b2667107b6dc563655be92ae0485e2a8dc92225f4a1420443c868/galaxy_tool_util-24.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-rrwbi0k1' 2024-05-07T16:13:08,674 Created temporary directory: /tmp/pip-build-env-aax5lf7c 2024-05-07T16:13:08,678 Installing build dependencies: started 2024-05-07T16:13:08,679 Running command pip subprocess to install build dependencies 2024-05-07T16:13:09,839 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-07T16:13:10,337 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T16:13:11,843 Collecting setuptools 2024-05-07T16:13:11,858 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-07T16:13:14,492 Installing collected packages: setuptools 2024-05-07T16:13:16,951 Successfully installed setuptools-69.5.1 2024-05-07T16:13:17,497 Installing build dependencies: finished with status 'done' 2024-05-07T16:13:17,501 Getting requirements to build wheel: started 2024-05-07T16:13:17,502 Running command Getting requirements to build wheel 2024-05-07T16:13:18,147 running egg_info 2024-05-07T16:13:18,150 writing galaxy_tool_util.egg-info/PKG-INFO 2024-05-07T16:13:18,157 writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt 2024-05-07T16:13:18,160 writing entry points to galaxy_tool_util.egg-info/entry_points.txt 2024-05-07T16:13:18,163 writing requirements to galaxy_tool_util.egg-info/requires.txt 2024-05-07T16:13:18,165 writing top-level names to galaxy_tool_util.egg-info/top_level.txt 2024-05-07T16:13:18,203 reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2024-05-07T16:13:18,209 reading manifest template 'MANIFEST.in' 2024-05-07T16:13:18,214 adding license file 'LICENSE' 2024-05-07T16:13:18,222 writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2024-05-07T16:13:18,308 Getting requirements to build wheel: finished with status 'done' 2024-05-07T16:13:18,316 Installing backend dependencies: started 2024-05-07T16:13:18,317 Running command pip subprocess to install backend dependencies 2024-05-07T16:13:19,517 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-07T16:13:20,035 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T16:13:20,533 Collecting wheel 2024-05-07T16:13:20,568 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-07T16:13:22,865 Installing collected packages: wheel 2024-05-07T16:13:23,083 Creating /tmp/pip-build-env-aax5lf7c/normal/local/bin 2024-05-07T16:13:23,085 changing mode of /tmp/pip-build-env-aax5lf7c/normal/local/bin/wheel to 755 2024-05-07T16:13:23,097 Successfully installed wheel-0.43.0 2024-05-07T16:13:23,603 Installing backend dependencies: finished with status 'done' 2024-05-07T16:13:23,605 Created temporary directory: /tmp/pip-modern-metadata-yw77sv38 2024-05-07T16:13:23,607 Preparing metadata (pyproject.toml): started 2024-05-07T16:13:23,608 Running command Preparing metadata (pyproject.toml) 2024-05-07T16:13:24,237 running dist_info 2024-05-07T16:13:24,242 creating /tmp/pip-modern-metadata-yw77sv38/galaxy_tool_util.egg-info 2024-05-07T16:13:24,245 writing /tmp/pip-modern-metadata-yw77sv38/galaxy_tool_util.egg-info/PKG-INFO 2024-05-07T16:13:24,253 writing dependency_links to /tmp/pip-modern-metadata-yw77sv38/galaxy_tool_util.egg-info/dependency_links.txt 2024-05-07T16:13:24,255 writing entry points to /tmp/pip-modern-metadata-yw77sv38/galaxy_tool_util.egg-info/entry_points.txt 2024-05-07T16:13:24,258 writing requirements to /tmp/pip-modern-metadata-yw77sv38/galaxy_tool_util.egg-info/requires.txt 2024-05-07T16:13:24,259 writing top-level names to /tmp/pip-modern-metadata-yw77sv38/galaxy_tool_util.egg-info/top_level.txt 2024-05-07T16:13:24,260 writing manifest file '/tmp/pip-modern-metadata-yw77sv38/galaxy_tool_util.egg-info/SOURCES.txt' 2024-05-07T16:13:24,309 reading manifest file '/tmp/pip-modern-metadata-yw77sv38/galaxy_tool_util.egg-info/SOURCES.txt' 2024-05-07T16:13:24,311 reading manifest template 'MANIFEST.in' 2024-05-07T16:13:24,317 adding license file 'LICENSE' 2024-05-07T16:13:24,323 writing manifest file '/tmp/pip-modern-metadata-yw77sv38/galaxy_tool_util.egg-info/SOURCES.txt' 2024-05-07T16:13:24,324 creating '/tmp/pip-modern-metadata-yw77sv38/galaxy_tool_util-24.0.2.dist-info' 2024-05-07T16:13:24,506 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-07T16:13:24,514 Source in /tmp/pip-wheel-s17f2mw4/galaxy-tool-util_cf37fd2b5ab447a79d3d0ac3ee09a7e4 has version 24.0.2, which satisfies requirement galaxy-tool-util==24.0.2 from https://files.pythonhosted.org/packages/a5/05/d6e23f3b2667107b6dc563655be92ae0485e2a8dc92225f4a1420443c868/galaxy_tool_util-24.0.2.tar.gz 2024-05-07T16:13:24,515 Removed galaxy-tool-util==24.0.2 from https://files.pythonhosted.org/packages/a5/05/d6e23f3b2667107b6dc563655be92ae0485e2a8dc92225f4a1420443c868/galaxy_tool_util-24.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-rrwbi0k1' 2024-05-07T16:13:24,522 Created temporary directory: /tmp/pip-unpack-xhzu68d1 2024-05-07T16:13:24,523 Created temporary directory: /tmp/pip-unpack-9uoradck 2024-05-07T16:13:24,559 Building wheels for collected packages: galaxy-tool-util 2024-05-07T16:13:24,563 Created temporary directory: /tmp/pip-wheel-rj3ta23k 2024-05-07T16:13:24,563 Destination directory: /tmp/pip-wheel-rj3ta23k 2024-05-07T16:13:24,565 Building wheel for galaxy-tool-util (pyproject.toml): started 2024-05-07T16:13:24,567 Running command Building wheel for galaxy-tool-util (pyproject.toml) 2024-05-07T16:13:25,162 running bdist_wheel 2024-05-07T16:13:25,205 running build 2024-05-07T16:13:25,206 running build_py 2024-05-07T16:13:25,213 creating build 2024-05-07T16:13:25,213 creating build/lib 2024-05-07T16:13:25,214 creating build/lib/galaxy 2024-05-07T16:13:25,215 copying galaxy/__init__.py -> build/lib/galaxy 2024-05-07T16:13:25,218 creating build/lib/galaxy/tool_util 2024-05-07T16:13:25,219 copying galaxy/tool_util/__init__.py -> build/lib/galaxy/tool_util 2024-05-07T16:13:25,220 copying galaxy/tool_util/output_checker.py -> build/lib/galaxy/tool_util 2024-05-07T16:13:25,223 copying galaxy/tool_util/version.py -> build/lib/galaxy/tool_util 2024-05-07T16:13:25,225 copying galaxy/tool_util/provided_metadata.py -> build/lib/galaxy/tool_util 2024-05-07T16:13:25,227 copying galaxy/tool_util/fetcher.py -> build/lib/galaxy/tool_util 2024-05-07T16:13:25,229 copying galaxy/tool_util/loader_directory.py -> build/lib/galaxy/tool_util 2024-05-07T16:13:25,231 copying galaxy/tool_util/lint.py -> build/lib/galaxy/tool_util 2024-05-07T16:13:25,234 copying galaxy/tool_util/edam_util.py -> build/lib/galaxy/tool_util 2024-05-07T16:13:25,236 copying galaxy/tool_util/loader.py -> build/lib/galaxy/tool_util 2024-05-07T16:13:25,238 creating build/lib/galaxy/tool_util/cwl 2024-05-07T16:13:25,239 copying galaxy/tool_util/cwl/__init__.py -> build/lib/galaxy/tool_util/cwl 2024-05-07T16:13:25,241 copying galaxy/tool_util/cwl/runtime_actions.py -> build/lib/galaxy/tool_util/cwl 2024-05-07T16:13:25,243 copying galaxy/tool_util/cwl/runnable.py -> build/lib/galaxy/tool_util/cwl 2024-05-07T16:13:25,245 copying galaxy/tool_util/cwl/cwltool_deps.py -> build/lib/galaxy/tool_util/cwl 2024-05-07T16:13:25,247 copying galaxy/tool_util/cwl/representation.py -> build/lib/galaxy/tool_util/cwl 2024-05-07T16:13:25,249 copying galaxy/tool_util/cwl/util.py -> build/lib/galaxy/tool_util/cwl 2024-05-07T16:13:25,252 copying galaxy/tool_util/cwl/parser.py -> build/lib/galaxy/tool_util/cwl 2024-05-07T16:13:25,256 copying galaxy/tool_util/cwl/schema.py -> build/lib/galaxy/tool_util/cwl 2024-05-07T16:13:25,258 creating build/lib/galaxy/tool_util/data 2024-05-07T16:13:25,259 copying galaxy/tool_util/data/__init__.py -> build/lib/galaxy/tool_util/data 2024-05-07T16:13:25,262 copying galaxy/tool_util/data/_schema.py -> build/lib/galaxy/tool_util/data 2024-05-07T16:13:25,265 creating build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,266 copying galaxy/tool_util/linters/_util.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,267 copying galaxy/tool_util/linters/xml_order.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,269 copying galaxy/tool_util/linters/__init__.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,271 copying galaxy/tool_util/linters/general.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,273 copying galaxy/tool_util/linters/inputs.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,277 copying galaxy/tool_util/linters/stdio.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,279 copying galaxy/tool_util/linters/command.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,280 copying galaxy/tool_util/linters/help.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,282 copying galaxy/tool_util/linters/tests.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,285 copying galaxy/tool_util/linters/cwl.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,287 copying galaxy/tool_util/linters/xsd.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,288 copying galaxy/tool_util/linters/citations.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,290 copying galaxy/tool_util/linters/output.py -> build/lib/galaxy/tool_util/linters 2024-05-07T16:13:25,293 creating build/lib/galaxy/tool_util/toolbox 2024-05-07T16:13:25,294 copying galaxy/tool_util/toolbox/__init__.py -> build/lib/galaxy/tool_util/toolbox 2024-05-07T16:13:25,296 copying galaxy/tool_util/toolbox/panel.py -> build/lib/galaxy/tool_util/toolbox 2024-05-07T16:13:25,299 copying galaxy/tool_util/toolbox/integrated_panel.py -> build/lib/galaxy/tool_util/toolbox 2024-05-07T16:13:25,301 copying galaxy/tool_util/toolbox/base.py -> build/lib/galaxy/tool_util/toolbox 2024-05-07T16:13:25,305 copying galaxy/tool_util/toolbox/parser.py -> build/lib/galaxy/tool_util/toolbox 2024-05-07T16:13:25,307 copying galaxy/tool_util/toolbox/watcher.py -> build/lib/galaxy/tool_util/toolbox 2024-05-07T16:13:25,310 creating build/lib/galaxy/tool_util/client 2024-05-07T16:13:25,311 copying galaxy/tool_util/client/__init__.py -> build/lib/galaxy/tool_util/client 2024-05-07T16:13:25,313 copying galaxy/tool_util/client/staging.py -> build/lib/galaxy/tool_util/client 2024-05-07T16:13:25,316 creating build/lib/galaxy/tool_util/biotools 2024-05-07T16:13:25,317 copying galaxy/tool_util/biotools/__init__.py -> build/lib/galaxy/tool_util/biotools 2024-05-07T16:13:25,319 copying galaxy/tool_util/biotools/source.py -> build/lib/galaxy/tool_util/biotools 2024-05-07T16:13:25,322 copying galaxy/tool_util/biotools/interface.py -> build/lib/galaxy/tool_util/biotools 2024-05-07T16:13:25,324 creating build/lib/galaxy/tool_util/verify 2024-05-07T16:13:25,325 copying galaxy/tool_util/verify/__init__.py -> build/lib/galaxy/tool_util/verify 2024-05-07T16:13:25,328 copying galaxy/tool_util/verify/wait.py -> build/lib/galaxy/tool_util/verify 2024-05-07T16:13:25,330 copying galaxy/tool_util/verify/interactor.py -> build/lib/galaxy/tool_util/verify 2024-05-07T16:13:25,334 copying galaxy/tool_util/verify/script.py -> build/lib/galaxy/tool_util/verify 2024-05-07T16:13:25,337 copying galaxy/tool_util/verify/test_data.py -> build/lib/galaxy/tool_util/verify 2024-05-07T16:13:25,340 creating build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,341 copying galaxy/tool_util/deps/brew_exts.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,345 copying galaxy/tool_util/deps/__init__.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,348 copying galaxy/tool_util/deps/requirements.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,351 copying galaxy/tool_util/deps/views.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,354 copying galaxy/tool_util/deps/docker_util.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,356 copying galaxy/tool_util/deps/installable.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,358 copying galaxy/tool_util/deps/commands.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,360 copying galaxy/tool_util/deps/conda_compat.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,362 copying galaxy/tool_util/deps/containers.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,365 copying galaxy/tool_util/deps/dependencies.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,367 copying galaxy/tool_util/deps/brew_util.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,368 copying galaxy/tool_util/deps/conda_util.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,370 copying galaxy/tool_util/deps/container_volumes.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,372 copying galaxy/tool_util/deps/singularity_util.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,374 copying galaxy/tool_util/deps/container_classes.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,377 copying galaxy/tool_util/deps/dockerfiles.py -> build/lib/galaxy/tool_util/deps 2024-05-07T16:13:25,379 creating build/lib/galaxy/tool_util/parser 2024-05-07T16:13:25,380 copying galaxy/tool_util/parser/__init__.py -> build/lib/galaxy/tool_util/parser 2024-05-07T16:13:25,382 copying galaxy/tool_util/parser/output_objects.py -> build/lib/galaxy/tool_util/parser 2024-05-07T16:13:25,384 copying galaxy/tool_util/parser/xml.py -> build/lib/galaxy/tool_util/parser 2024-05-07T16:13:25,387 copying galaxy/tool_util/parser/output_collection_def.py -> build/lib/galaxy/tool_util/parser 2024-05-07T16:13:25,389 copying galaxy/tool_util/parser/stdio.py -> build/lib/galaxy/tool_util/parser 2024-05-07T16:13:25,391 copying galaxy/tool_util/parser/output_actions.py -> build/lib/galaxy/tool_util/parser 2024-05-07T16:13:25,394 copying galaxy/tool_util/parser/yaml.py -> build/lib/galaxy/tool_util/parser 2024-05-07T16:13:25,396 copying galaxy/tool_util/parser/cwl.py -> build/lib/galaxy/tool_util/parser 2024-05-07T16:13:25,398 copying galaxy/tool_util/parser/factory.py -> build/lib/galaxy/tool_util/parser 2024-05-07T16:13:25,400 copying galaxy/tool_util/parser/interface.py -> build/lib/galaxy/tool_util/parser 2024-05-07T16:13:25,403 copying galaxy/tool_util/parser/util.py -> build/lib/galaxy/tool_util/parser 2024-05-07T16:13:25,405 creating build/lib/galaxy/tool_util/unittest_utils 2024-05-07T16:13:25,406 copying galaxy/tool_util/unittest_utils/__init__.py -> build/lib/galaxy/tool_util/unittest_utils 2024-05-07T16:13:25,408 copying galaxy/tool_util/unittest_utils/sample_data.py -> build/lib/galaxy/tool_util/unittest_utils 2024-05-07T16:13:25,410 copying galaxy/tool_util/unittest_utils/interactor.py -> build/lib/galaxy/tool_util/unittest_utils 2024-05-07T16:13:25,412 creating build/lib/galaxy/tool_util/locations 2024-05-07T16:13:25,413 copying galaxy/tool_util/locations/__init__.py -> build/lib/galaxy/tool_util/locations 2024-05-07T16:13:25,415 copying galaxy/tool_util/locations/http.py -> build/lib/galaxy/tool_util/locations 2024-05-07T16:13:25,417 copying galaxy/tool_util/locations/file.py -> build/lib/galaxy/tool_util/locations 2024-05-07T16:13:25,418 copying galaxy/tool_util/locations/dockstore.py -> build/lib/galaxy/tool_util/locations 2024-05-07T16:13:25,421 creating build/lib/galaxy/tool_util/ontologies 2024-05-07T16:13:25,422 copying galaxy/tool_util/ontologies/__init__.py -> build/lib/galaxy/tool_util/ontologies 2024-05-07T16:13:25,423 copying galaxy/tool_util/ontologies/ontology_data.py -> build/lib/galaxy/tool_util/ontologies 2024-05-07T16:13:25,426 creating build/lib/galaxy/tool_util/data/bundles 2024-05-07T16:13:25,426 copying galaxy/tool_util/data/bundles/__init__.py -> build/lib/galaxy/tool_util/data/bundles 2024-05-07T16:13:25,428 copying galaxy/tool_util/data/bundles/models.py -> build/lib/galaxy/tool_util/data/bundles 2024-05-07T16:13:25,430 creating build/lib/galaxy/tool_util/toolbox/lineages 2024-05-07T16:13:25,431 copying galaxy/tool_util/toolbox/lineages/__init__.py -> build/lib/galaxy/tool_util/toolbox/lineages 2024-05-07T16:13:25,433 copying galaxy/tool_util/toolbox/lineages/factory.py -> build/lib/galaxy/tool_util/toolbox/lineages 2024-05-07T16:13:25,435 copying galaxy/tool_util/toolbox/lineages/interface.py -> build/lib/galaxy/tool_util/toolbox/lineages 2024-05-07T16:13:25,437 creating build/lib/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,438 copying galaxy/tool_util/toolbox/views/__init__.py -> build/lib/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,439 copying galaxy/tool_util/toolbox/views/static.py -> build/lib/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,442 copying galaxy/tool_util/toolbox/views/sources.py -> build/lib/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,443 copying galaxy/tool_util/toolbox/views/edam.py -> build/lib/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,446 copying galaxy/tool_util/toolbox/views/interface.py -> build/lib/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,448 copying galaxy/tool_util/toolbox/views/definitions.py -> build/lib/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,450 creating build/lib/galaxy/tool_util/toolbox/filters 2024-05-07T16:13:25,451 copying galaxy/tool_util/toolbox/filters/__init__.py -> build/lib/galaxy/tool_util/toolbox/filters 2024-05-07T16:13:25,454 creating build/lib/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,455 copying galaxy/tool_util/verify/asserts/_util.py -> build/lib/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,457 copying galaxy/tool_util/verify/asserts/__init__.py -> build/lib/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,459 copying galaxy/tool_util/verify/asserts/size.py -> build/lib/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,461 copying galaxy/tool_util/verify/asserts/tabular.py -> build/lib/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,463 copying galaxy/tool_util/verify/asserts/xml.py -> build/lib/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,465 copying galaxy/tool_util/verify/asserts/hdf5.py -> build/lib/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,467 copying galaxy/tool_util/verify/asserts/json.py -> build/lib/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,468 copying galaxy/tool_util/verify/asserts/text.py -> build/lib/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,471 copying galaxy/tool_util/verify/asserts/archive.py -> build/lib/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,473 creating build/lib/galaxy/tool_util/deps/container_resolvers 2024-05-07T16:13:25,474 copying galaxy/tool_util/deps/container_resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2024-05-07T16:13:25,476 copying galaxy/tool_util/deps/container_resolvers/explicit.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2024-05-07T16:13:25,479 copying galaxy/tool_util/deps/container_resolvers/test.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2024-05-07T16:13:25,480 copying galaxy/tool_util/deps/container_resolvers/mulled.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2024-05-07T16:13:25,484 creating build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,485 copying galaxy/tool_util/deps/mulled/mulled_hash.py -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,487 copying galaxy/tool_util/deps/mulled/__init__.py -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,488 copying galaxy/tool_util/deps/mulled/mulled_search.py -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,490 copying galaxy/tool_util/deps/mulled/mulled_list.py -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,493 copying galaxy/tool_util/deps/mulled/_cli.py -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,494 copying galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,496 copying galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,498 copying galaxy/tool_util/deps/mulled/mulled_build.py -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,500 copying galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,502 copying galaxy/tool_util/deps/mulled/get_tests.py -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,504 copying galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,506 copying galaxy/tool_util/deps/mulled/util.py -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,509 creating build/lib/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,510 copying galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,512 copying galaxy/tool_util/deps/resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,515 copying galaxy/tool_util/deps/resolvers/modules.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,517 copying galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,519 copying galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,520 copying galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,523 copying galaxy/tool_util/deps/resolvers/conda.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,525 copying galaxy/tool_util/deps/resolvers/lmod.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,527 copying galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,530 copying galaxy/tool_util/deps/resolvers/homebrew.py -> build/lib/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,531 running egg_info 2024-05-07T16:13:25,535 writing galaxy_tool_util.egg-info/PKG-INFO 2024-05-07T16:13:25,542 writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt 2024-05-07T16:13:25,544 writing entry points to galaxy_tool_util.egg-info/entry_points.txt 2024-05-07T16:13:25,546 writing requirements to galaxy_tool_util.egg-info/requires.txt 2024-05-07T16:13:25,548 writing top-level names to galaxy_tool_util.egg-info/top_level.txt 2024-05-07T16:13:25,572 reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2024-05-07T16:13:25,577 reading manifest template 'MANIFEST.in' 2024-05-07T16:13:25,582 adding license file 'LICENSE' 2024-05-07T16:13:25,589 writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2024-05-07T16:13:25,593 /tmp/pip-build-env-aax5lf7c/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tool_util.xsd' is absent from the `packages` configuration. 2024-05-07T16:13:25,594 !! 2024-05-07T16:13:25,595 ******************************************************************************** 2024-05-07T16:13:25,596 ############################ 2024-05-07T16:13:25,596 # Package would be ignored # 2024-05-07T16:13:25,597 ############################ 2024-05-07T16:13:25,597 Python recognizes 'galaxy.tool_util.xsd' as an importable package[^1], 2024-05-07T16:13:25,598 but it is absent from setuptools' `packages` configuration. 2024-05-07T16:13:25,599 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-07T16:13:25,600 package, please make sure that 'galaxy.tool_util.xsd' is explicitly added 2024-05-07T16:13:25,601 to the `packages` configuration field. 2024-05-07T16:13:25,601 Alternatively, you can also rely on setuptools' discovery methods 2024-05-07T16:13:25,602 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-07T16:13:25,602 instead of `find_packages(...)`/`find:`). 2024-05-07T16:13:25,603 You can read more about "package discovery" on setuptools documentation page: 2024-05-07T16:13:25,604 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-07T16:13:25,605 If you don't want 'galaxy.tool_util.xsd' to be distributed and are 2024-05-07T16:13:25,605 already explicitly excluding 'galaxy.tool_util.xsd' via 2024-05-07T16:13:25,606 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-07T16:13:25,606 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-07T16:13:25,606 combination with a more fine grained `package-data` configuration. 2024-05-07T16:13:25,607 You can read more about "package data files" on setuptools documentation page: 2024-05-07T16:13:25,608 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-07T16:13:25,610 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-07T16:13:25,610 even if it does not contain any `.py` files. 2024-05-07T16:13:25,610 On the other hand, currently there is no concept of package data 2024-05-07T16:13:25,611 directory, all directories are treated like packages. 2024-05-07T16:13:25,611 ******************************************************************************** 2024-05-07T16:13:25,612 !! 2024-05-07T16:13:25,613 check.warn(importable) 2024-05-07T16:13:25,613 copying galaxy/py.typed -> build/lib/galaxy 2024-05-07T16:13:25,614 creating build/lib/galaxy/tool_util/xsd 2024-05-07T16:13:25,614 copying galaxy/tool_util/xsd/LICENSE -> build/lib/galaxy/tool_util/xsd 2024-05-07T16:13:25,615 copying galaxy/tool_util/xsd/README.md -> build/lib/galaxy/tool_util/xsd 2024-05-07T16:13:25,616 copying galaxy/tool_util/xsd/galaxy.jxb -> build/lib/galaxy/tool_util/xsd 2024-05-07T16:13:25,617 copying galaxy/tool_util/xsd/galaxy.xsd -> build/lib/galaxy/tool_util/xsd 2024-05-07T16:13:25,625 copying galaxy/tool_util/verify/test_config.sample.yml -> build/lib/galaxy/tool_util/verify 2024-05-07T16:13:25,627 copying galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/lib/galaxy/tool_util/ontologies 2024-05-07T16:13:25,630 copying galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/lib/galaxy/tool_util/ontologies 2024-05-07T16:13:25,632 copying galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/lib/galaxy/tool_util/ontologies 2024-05-07T16:13:25,634 copying galaxy/tool_util/toolbox/filters/examples.py.sample -> build/lib/galaxy/tool_util/toolbox/filters 2024-05-07T16:13:25,636 copying galaxy/tool_util/deps/mulled/invfile.lua -> build/lib/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,638 copying galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/lib/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,659 installing to build/bdist.linux-armv7l/wheel 2024-05-07T16:13:25,660 running install 2024-05-07T16:13:25,684 running install_lib 2024-05-07T16:13:25,691 creating build/bdist.linux-armv7l 2024-05-07T16:13:25,691 creating build/bdist.linux-armv7l/wheel 2024-05-07T16:13:25,693 creating build/bdist.linux-armv7l/wheel/galaxy 2024-05-07T16:13:25,694 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2024-05-07T16:13:25,696 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy 2024-05-07T16:13:25,699 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-05-07T16:13:25,700 copying build/lib/galaxy/tool_util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-05-07T16:13:25,701 copying build/lib/galaxy/tool_util/output_checker.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-05-07T16:13:25,704 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-05-07T16:13:25,705 copying build/lib/galaxy/tool_util/cwl/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-05-07T16:13:25,706 copying build/lib/galaxy/tool_util/cwl/runtime_actions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-05-07T16:13:25,708 copying build/lib/galaxy/tool_util/cwl/runnable.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-05-07T16:13:25,710 copying build/lib/galaxy/tool_util/cwl/cwltool_deps.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-05-07T16:13:25,712 copying build/lib/galaxy/tool_util/cwl/representation.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-05-07T16:13:25,714 copying build/lib/galaxy/tool_util/cwl/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-05-07T16:13:25,716 copying build/lib/galaxy/tool_util/cwl/parser.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-05-07T16:13:25,719 copying build/lib/galaxy/tool_util/cwl/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2024-05-07T16:13:25,721 copying build/lib/galaxy/tool_util/version.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-05-07T16:13:25,724 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/data 2024-05-07T16:13:25,725 copying build/lib/galaxy/tool_util/data/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/data 2024-05-07T16:13:25,728 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/data/bundles 2024-05-07T16:13:25,729 copying build/lib/galaxy/tool_util/data/bundles/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/data/bundles 2024-05-07T16:13:25,731 copying build/lib/galaxy/tool_util/data/bundles/models.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/data/bundles 2024-05-07T16:13:25,733 copying build/lib/galaxy/tool_util/data/_schema.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/data 2024-05-07T16:13:25,735 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-05-07T16:13:25,736 copying build/lib/galaxy/tool_util/xsd/LICENSE -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-05-07T16:13:25,738 copying build/lib/galaxy/tool_util/xsd/galaxy.xsd -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-05-07T16:13:25,745 copying build/lib/galaxy/tool_util/xsd/galaxy.jxb -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-05-07T16:13:25,747 copying build/lib/galaxy/tool_util/xsd/README.md -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2024-05-07T16:13:25,749 copying build/lib/galaxy/tool_util/provided_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-05-07T16:13:25,752 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,753 copying build/lib/galaxy/tool_util/linters/_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,754 copying build/lib/galaxy/tool_util/linters/xml_order.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,756 copying build/lib/galaxy/tool_util/linters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,762 copying build/lib/galaxy/tool_util/linters/general.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,764 copying build/lib/galaxy/tool_util/linters/inputs.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,767 copying build/lib/galaxy/tool_util/linters/stdio.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,769 copying build/lib/galaxy/tool_util/linters/command.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,771 copying build/lib/galaxy/tool_util/linters/help.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,773 copying build/lib/galaxy/tool_util/linters/tests.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,776 copying build/lib/galaxy/tool_util/linters/cwl.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,777 copying build/lib/galaxy/tool_util/linters/xsd.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,779 copying build/lib/galaxy/tool_util/linters/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,781 copying build/lib/galaxy/tool_util/linters/output.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2024-05-07T16:13:25,783 copying build/lib/galaxy/tool_util/fetcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-05-07T16:13:25,785 copying build/lib/galaxy/tool_util/loader_directory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-05-07T16:13:25,787 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-05-07T16:13:25,788 copying build/lib/galaxy/tool_util/toolbox/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-05-07T16:13:25,791 copying build/lib/galaxy/tool_util/toolbox/panel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-05-07T16:13:25,794 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2024-05-07T16:13:25,794 copying build/lib/galaxy/tool_util/toolbox/lineages/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2024-05-07T16:13:25,796 copying build/lib/galaxy/tool_util/toolbox/lineages/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2024-05-07T16:13:25,798 copying build/lib/galaxy/tool_util/toolbox/lineages/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2024-05-07T16:13:25,800 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,801 copying build/lib/galaxy/tool_util/toolbox/views/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,803 copying build/lib/galaxy/tool_util/toolbox/views/static.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,805 copying build/lib/galaxy/tool_util/toolbox/views/sources.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,807 copying build/lib/galaxy/tool_util/toolbox/views/edam.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,810 copying build/lib/galaxy/tool_util/toolbox/views/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,811 copying build/lib/galaxy/tool_util/toolbox/views/definitions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2024-05-07T16:13:25,813 copying build/lib/galaxy/tool_util/toolbox/integrated_panel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-05-07T16:13:25,816 copying build/lib/galaxy/tool_util/toolbox/base.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-05-07T16:13:25,820 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2024-05-07T16:13:25,821 copying build/lib/galaxy/tool_util/toolbox/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2024-05-07T16:13:25,823 copying build/lib/galaxy/tool_util/toolbox/filters/examples.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2024-05-07T16:13:25,825 copying build/lib/galaxy/tool_util/toolbox/parser.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-05-07T16:13:25,828 copying build/lib/galaxy/tool_util/toolbox/watcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2024-05-07T16:13:25,830 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2024-05-07T16:13:25,831 copying build/lib/galaxy/tool_util/client/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2024-05-07T16:13:25,833 copying build/lib/galaxy/tool_util/client/staging.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2024-05-07T16:13:25,836 copying build/lib/galaxy/tool_util/lint.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-05-07T16:13:25,838 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2024-05-07T16:13:25,839 copying build/lib/galaxy/tool_util/biotools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2024-05-07T16:13:25,841 copying build/lib/galaxy/tool_util/biotools/source.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2024-05-07T16:13:25,843 copying build/lib/galaxy/tool_util/biotools/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2024-05-07T16:13:25,845 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-05-07T16:13:25,846 copying build/lib/galaxy/tool_util/verify/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-05-07T16:13:25,848 copying build/lib/galaxy/tool_util/verify/wait.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-05-07T16:13:25,850 copying build/lib/galaxy/tool_util/verify/interactor.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-05-07T16:13:25,853 copying build/lib/galaxy/tool_util/verify/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-05-07T16:13:25,856 copying build/lib/galaxy/tool_util/verify/test_config.sample.yml -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-05-07T16:13:25,857 copying build/lib/galaxy/tool_util/verify/test_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2024-05-07T16:13:25,860 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,861 copying build/lib/galaxy/tool_util/verify/asserts/_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,863 copying build/lib/galaxy/tool_util/verify/asserts/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,865 copying build/lib/galaxy/tool_util/verify/asserts/size.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,866 copying build/lib/galaxy/tool_util/verify/asserts/tabular.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,868 copying build/lib/galaxy/tool_util/verify/asserts/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,870 copying build/lib/galaxy/tool_util/verify/asserts/hdf5.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,872 copying build/lib/galaxy/tool_util/verify/asserts/json.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,874 copying build/lib/galaxy/tool_util/verify/asserts/text.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,876 copying build/lib/galaxy/tool_util/verify/asserts/archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2024-05-07T16:13:25,878 copying build/lib/galaxy/tool_util/edam_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-05-07T16:13:25,880 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,881 copying build/lib/galaxy/tool_util/deps/brew_exts.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,884 copying build/lib/galaxy/tool_util/deps/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,886 copying build/lib/galaxy/tool_util/deps/requirements.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,889 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-05-07T16:13:25,890 copying build/lib/galaxy/tool_util/deps/container_resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-05-07T16:13:25,892 copying build/lib/galaxy/tool_util/deps/container_resolvers/explicit.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-05-07T16:13:25,895 copying build/lib/galaxy/tool_util/deps/container_resolvers/test.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-05-07T16:13:25,897 copying build/lib/galaxy/tool_util/deps/container_resolvers/mulled.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2024-05-07T16:13:25,899 copying build/lib/galaxy/tool_util/deps/views.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,902 copying build/lib/galaxy/tool_util/deps/docker_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,903 copying build/lib/galaxy/tool_util/deps/installable.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,906 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,907 copying build/lib/galaxy/tool_util/deps/mulled/mulled_hash.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,909 copying build/lib/galaxy/tool_util/deps/mulled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,910 copying build/lib/galaxy/tool_util/deps/mulled/invfile.lua -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,912 copying build/lib/galaxy/tool_util/deps/mulled/mulled_search.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,914 copying build/lib/galaxy/tool_util/deps/mulled/mulled_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,917 copying build/lib/galaxy/tool_util/deps/mulled/_cli.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,918 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,920 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,922 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,925 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,927 copying build/lib/galaxy/tool_util/deps/mulled/get_tests.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,929 copying build/lib/galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,931 copying build/lib/galaxy/tool_util/deps/mulled/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2024-05-07T16:13:25,934 copying build/lib/galaxy/tool_util/deps/commands.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,936 copying build/lib/galaxy/tool_util/deps/conda_compat.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,938 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,939 copying build/lib/galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,941 copying build/lib/galaxy/tool_util/deps/resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,944 copying build/lib/galaxy/tool_util/deps/resolvers/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,946 copying build/lib/galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,949 copying build/lib/galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,950 copying build/lib/galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,953 copying build/lib/galaxy/tool_util/deps/resolvers/conda.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,956 copying build/lib/galaxy/tool_util/deps/resolvers/lmod.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,958 copying build/lib/galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,960 copying build/lib/galaxy/tool_util/deps/resolvers/homebrew.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,962 copying build/lib/galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2024-05-07T16:13:25,963 copying build/lib/galaxy/tool_util/deps/containers.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,966 copying build/lib/galaxy/tool_util/deps/dependencies.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,968 copying build/lib/galaxy/tool_util/deps/brew_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,970 copying build/lib/galaxy/tool_util/deps/conda_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,973 copying build/lib/galaxy/tool_util/deps/container_volumes.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,976 copying build/lib/galaxy/tool_util/deps/singularity_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,978 copying build/lib/galaxy/tool_util/deps/container_classes.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,981 copying build/lib/galaxy/tool_util/deps/dockerfiles.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2024-05-07T16:13:25,984 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-05-07T16:13:25,985 copying build/lib/galaxy/tool_util/parser/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-05-07T16:13:25,987 copying build/lib/galaxy/tool_util/parser/output_objects.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-05-07T16:13:25,989 copying build/lib/galaxy/tool_util/parser/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-05-07T16:13:25,993 copying build/lib/galaxy/tool_util/parser/output_collection_def.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-05-07T16:13:25,995 copying build/lib/galaxy/tool_util/parser/stdio.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-05-07T16:13:25,997 copying build/lib/galaxy/tool_util/parser/output_actions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-05-07T16:13:26,001 copying build/lib/galaxy/tool_util/parser/yaml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-05-07T16:13:26,006 copying build/lib/galaxy/tool_util/parser/cwl.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-05-07T16:13:26,008 copying build/lib/galaxy/tool_util/parser/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-05-07T16:13:26,010 copying build/lib/galaxy/tool_util/parser/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-05-07T16:13:26,013 copying build/lib/galaxy/tool_util/parser/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2024-05-07T16:13:26,015 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2024-05-07T16:13:26,016 copying build/lib/galaxy/tool_util/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2024-05-07T16:13:26,018 copying build/lib/galaxy/tool_util/unittest_utils/sample_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2024-05-07T16:13:26,020 copying build/lib/galaxy/tool_util/unittest_utils/interactor.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2024-05-07T16:13:26,022 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-05-07T16:13:26,023 copying build/lib/galaxy/tool_util/locations/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-05-07T16:13:26,025 copying build/lib/galaxy/tool_util/locations/http.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-05-07T16:13:26,027 copying build/lib/galaxy/tool_util/locations/file.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-05-07T16:13:26,028 copying build/lib/galaxy/tool_util/locations/dockstore.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2024-05-07T16:13:26,030 copying build/lib/galaxy/tool_util/loader.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util 2024-05-07T16:13:26,032 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-05-07T16:13:26,033 copying build/lib/galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-05-07T16:13:26,035 copying build/lib/galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-05-07T16:13:26,037 copying build/lib/galaxy/tool_util/ontologies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-05-07T16:13:26,038 copying build/lib/galaxy/tool_util/ontologies/ontology_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-05-07T16:13:26,040 copying build/lib/galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2024-05-07T16:13:26,043 running install_egg_info 2024-05-07T16:13:26,054 Copying galaxy_tool_util.egg-info to build/bdist.linux-armv7l/wheel/galaxy_tool_util-24.0.2-py3.11.egg-info 2024-05-07T16:13:26,069 running install_scripts 2024-05-07T16:13:26,098 creating build/bdist.linux-armv7l/wheel/galaxy_tool_util-24.0.2.dist-info/WHEEL 2024-05-07T16:13:26,101 creating '/tmp/pip-wheel-rj3ta23k/.tmp-pwqj048u/galaxy_tool_util-24.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-07T16:13:26,104 adding 'galaxy/__init__.py' 2024-05-07T16:13:26,106 adding 'galaxy/py.typed' 2024-05-07T16:13:26,108 adding 'galaxy/tool_util/__init__.py' 2024-05-07T16:13:26,110 adding 'galaxy/tool_util/edam_util.py' 2024-05-07T16:13:26,112 adding 'galaxy/tool_util/fetcher.py' 2024-05-07T16:13:26,115 adding 'galaxy/tool_util/lint.py' 2024-05-07T16:13:26,117 adding 'galaxy/tool_util/loader.py' 2024-05-07T16:13:26,120 adding 'galaxy/tool_util/loader_directory.py' 2024-05-07T16:13:26,122 adding 'galaxy/tool_util/output_checker.py' 2024-05-07T16:13:26,125 adding 'galaxy/tool_util/provided_metadata.py' 2024-05-07T16:13:26,127 adding 'galaxy/tool_util/version.py' 2024-05-07T16:13:26,129 adding 'galaxy/tool_util/biotools/__init__.py' 2024-05-07T16:13:26,131 adding 'galaxy/tool_util/biotools/interface.py' 2024-05-07T16:13:26,132 adding 'galaxy/tool_util/biotools/source.py' 2024-05-07T16:13:26,134 adding 'galaxy/tool_util/client/__init__.py' 2024-05-07T16:13:26,137 adding 'galaxy/tool_util/client/staging.py' 2024-05-07T16:13:26,139 adding 'galaxy/tool_util/cwl/__init__.py' 2024-05-07T16:13:26,141 adding 'galaxy/tool_util/cwl/cwltool_deps.py' 2024-05-07T16:13:26,150 adding 'galaxy/tool_util/cwl/parser.py' 2024-05-07T16:13:26,153 adding 'galaxy/tool_util/cwl/representation.py' 2024-05-07T16:13:26,155 adding 'galaxy/tool_util/cwl/runnable.py' 2024-05-07T16:13:26,157 adding 'galaxy/tool_util/cwl/runtime_actions.py' 2024-05-07T16:13:26,159 adding 'galaxy/tool_util/cwl/schema.py' 2024-05-07T16:13:26,163 adding 'galaxy/tool_util/cwl/util.py' 2024-05-07T16:13:26,175 adding 'galaxy/tool_util/data/__init__.py' 2024-05-07T16:13:26,177 adding 'galaxy/tool_util/data/_schema.py' 2024-05-07T16:13:26,179 adding 'galaxy/tool_util/data/bundles/__init__.py' 2024-05-07T16:13:26,181 adding 'galaxy/tool_util/data/bundles/models.py' 2024-05-07T16:13:26,185 adding 'galaxy/tool_util/deps/__init__.py' 2024-05-07T16:13:26,189 adding 'galaxy/tool_util/deps/brew_exts.py' 2024-05-07T16:13:26,191 adding 'galaxy/tool_util/deps/brew_util.py' 2024-05-07T16:13:26,192 adding 'galaxy/tool_util/deps/commands.py' 2024-05-07T16:13:26,193 adding 'galaxy/tool_util/deps/conda_compat.py' 2024-05-07T16:13:26,198 adding 'galaxy/tool_util/deps/conda_util.py' 2024-05-07T16:13:26,202 adding 'galaxy/tool_util/deps/container_classes.py' 2024-05-07T16:13:26,204 adding 'galaxy/tool_util/deps/container_volumes.py' 2024-05-07T16:13:26,207 adding 'galaxy/tool_util/deps/containers.py' 2024-05-07T16:13:26,209 adding 'galaxy/tool_util/deps/dependencies.py' 2024-05-07T16:13:26,211 adding 'galaxy/tool_util/deps/docker_util.py' 2024-05-07T16:13:26,213 adding 'galaxy/tool_util/deps/dockerfiles.py' 2024-05-07T16:13:26,215 adding 'galaxy/tool_util/deps/installable.py' 2024-05-07T16:13:26,217 adding 'galaxy/tool_util/deps/requirements.py' 2024-05-07T16:13:26,219 adding 'galaxy/tool_util/deps/singularity_util.py' 2024-05-07T16:13:26,223 adding 'galaxy/tool_util/deps/views.py' 2024-05-07T16:13:26,225 adding 'galaxy/tool_util/deps/container_resolvers/__init__.py' 2024-05-07T16:13:26,227 adding 'galaxy/tool_util/deps/container_resolvers/explicit.py' 2024-05-07T16:13:26,232 adding 'galaxy/tool_util/deps/container_resolvers/mulled.py' 2024-05-07T16:13:26,233 adding 'galaxy/tool_util/deps/container_resolvers/test.py' 2024-05-07T16:13:26,235 adding 'galaxy/tool_util/deps/mulled/__init__.py' 2024-05-07T16:13:26,237 adding 'galaxy/tool_util/deps/mulled/_cli.py' 2024-05-07T16:13:26,239 adding 'galaxy/tool_util/deps/mulled/get_tests.py' 2024-05-07T16:13:26,241 adding 'galaxy/tool_util/deps/mulled/invfile.lua' 2024-05-07T16:13:26,246 adding 'galaxy/tool_util/deps/mulled/mulled_build.py' 2024-05-07T16:13:26,248 adding 'galaxy/tool_util/deps/mulled/mulled_build_channel.py' 2024-05-07T16:13:26,250 adding 'galaxy/tool_util/deps/mulled/mulled_build_files.py' 2024-05-07T16:13:26,251 adding 'galaxy/tool_util/deps/mulled/mulled_build_tool.py' 2024-05-07T16:13:26,253 adding 'galaxy/tool_util/deps/mulled/mulled_hash.py' 2024-05-07T16:13:26,255 adding 'galaxy/tool_util/deps/mulled/mulled_list.py' 2024-05-07T16:13:26,257 adding 'galaxy/tool_util/deps/mulled/mulled_search.py' 2024-05-07T16:13:26,259 adding 'galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py' 2024-05-07T16:13:26,261 adding 'galaxy/tool_util/deps/mulled/util.py' 2024-05-07T16:13:26,264 adding 'galaxy/tool_util/deps/resolvers/__init__.py' 2024-05-07T16:13:26,265 adding 'galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py' 2024-05-07T16:13:26,268 adding 'galaxy/tool_util/deps/resolvers/conda.py' 2024-05-07T16:13:26,270 adding 'galaxy/tool_util/deps/resolvers/default_conda_mapping.yml' 2024-05-07T16:13:26,271 adding 'galaxy/tool_util/deps/resolvers/galaxy_packages.py' 2024-05-07T16:13:26,272 adding 'galaxy/tool_util/deps/resolvers/homebrew.py' 2024-05-07T16:13:26,274 adding 'galaxy/tool_util/deps/resolvers/lmod.py' 2024-05-07T16:13:26,276 adding 'galaxy/tool_util/deps/resolvers/modules.py' 2024-05-07T16:13:26,277 adding 'galaxy/tool_util/deps/resolvers/resolver_mixins.py' 2024-05-07T16:13:26,279 adding 'galaxy/tool_util/deps/resolvers/tool_shed_packages.py' 2024-05-07T16:13:26,280 adding 'galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py' 2024-05-07T16:13:26,282 adding 'galaxy/tool_util/linters/__init__.py' 2024-05-07T16:13:26,283 adding 'galaxy/tool_util/linters/_util.py' 2024-05-07T16:13:26,285 adding 'galaxy/tool_util/linters/citations.py' 2024-05-07T16:13:26,286 adding 'galaxy/tool_util/linters/command.py' 2024-05-07T16:13:26,287 adding 'galaxy/tool_util/linters/cwl.py' 2024-05-07T16:13:26,289 adding 'galaxy/tool_util/linters/general.py' 2024-05-07T16:13:26,290 adding 'galaxy/tool_util/linters/help.py' 2024-05-07T16:13:26,294 adding 'galaxy/tool_util/linters/inputs.py' 2024-05-07T16:13:26,296 adding 'galaxy/tool_util/linters/output.py' 2024-05-07T16:13:26,297 adding 'galaxy/tool_util/linters/stdio.py' 2024-05-07T16:13:26,299 adding 'galaxy/tool_util/linters/tests.py' 2024-05-07T16:13:26,301 adding 'galaxy/tool_util/linters/xml_order.py' 2024-05-07T16:13:26,302 adding 'galaxy/tool_util/linters/xsd.py' 2024-05-07T16:13:26,304 adding 'galaxy/tool_util/locations/__init__.py' 2024-05-07T16:13:26,305 adding 'galaxy/tool_util/locations/dockstore.py' 2024-05-07T16:13:26,306 adding 'galaxy/tool_util/locations/file.py' 2024-05-07T16:13:26,307 adding 'galaxy/tool_util/locations/http.py' 2024-05-07T16:13:26,309 adding 'galaxy/tool_util/ontologies/__init__.py' 2024-05-07T16:13:26,314 adding 'galaxy/tool_util/ontologies/biotools_mappings.tsv' 2024-05-07T16:13:26,316 adding 'galaxy/tool_util/ontologies/edam_operation_mappings.tsv' 2024-05-07T16:13:26,317 adding 'galaxy/tool_util/ontologies/edam_topic_mappings.tsv' 2024-05-07T16:13:26,318 adding 'galaxy/tool_util/ontologies/ontology_data.py' 2024-05-07T16:13:26,320 adding 'galaxy/tool_util/parser/__init__.py' 2024-05-07T16:13:26,322 adding 'galaxy/tool_util/parser/cwl.py' 2024-05-07T16:13:26,323 adding 'galaxy/tool_util/parser/factory.py' 2024-05-07T16:13:26,326 adding 'galaxy/tool_util/parser/interface.py' 2024-05-07T16:13:26,329 adding 'galaxy/tool_util/parser/output_actions.py' 2024-05-07T16:13:26,331 adding 'galaxy/tool_util/parser/output_collection_def.py' 2024-05-07T16:13:26,333 adding 'galaxy/tool_util/parser/output_objects.py' 2024-05-07T16:13:26,334 adding 'galaxy/tool_util/parser/stdio.py' 2024-05-07T16:13:26,336 adding 'galaxy/tool_util/parser/util.py' 2024-05-07T16:13:26,343 adding 'galaxy/tool_util/parser/xml.py' 2024-05-07T16:13:26,345 adding 'galaxy/tool_util/parser/yaml.py' 2024-05-07T16:13:26,347 adding 'galaxy/tool_util/toolbox/__init__.py' 2024-05-07T16:13:26,355 adding 'galaxy/tool_util/toolbox/base.py' 2024-05-07T16:13:26,357 adding 'galaxy/tool_util/toolbox/integrated_panel.py' 2024-05-07T16:13:26,359 adding 'galaxy/tool_util/toolbox/panel.py' 2024-05-07T16:13:26,360 adding 'galaxy/tool_util/toolbox/parser.py' 2024-05-07T16:13:26,362 adding 'galaxy/tool_util/toolbox/watcher.py' 2024-05-07T16:13:26,364 adding 'galaxy/tool_util/toolbox/filters/__init__.py' 2024-05-07T16:13:26,366 adding 'galaxy/tool_util/toolbox/filters/examples.py.sample' 2024-05-07T16:13:26,368 adding 'galaxy/tool_util/toolbox/lineages/__init__.py' 2024-05-07T16:13:26,369 adding 'galaxy/tool_util/toolbox/lineages/factory.py' 2024-05-07T16:13:26,371 adding 'galaxy/tool_util/toolbox/lineages/interface.py' 2024-05-07T16:13:26,372 adding 'galaxy/tool_util/toolbox/views/__init__.py' 2024-05-07T16:13:26,374 adding 'galaxy/tool_util/toolbox/views/definitions.py' 2024-05-07T16:13:26,375 adding 'galaxy/tool_util/toolbox/views/edam.py' 2024-05-07T16:13:26,377 adding 'galaxy/tool_util/toolbox/views/interface.py' 2024-05-07T16:13:26,378 adding 'galaxy/tool_util/toolbox/views/sources.py' 2024-05-07T16:13:26,380 adding 'galaxy/tool_util/toolbox/views/static.py' 2024-05-07T16:13:26,382 adding 'galaxy/tool_util/unittest_utils/__init__.py' 2024-05-07T16:13:26,383 adding 'galaxy/tool_util/unittest_utils/interactor.py' 2024-05-07T16:13:26,385 adding 'galaxy/tool_util/unittest_utils/sample_data.py' 2024-05-07T16:13:26,388 adding 'galaxy/tool_util/verify/__init__.py' 2024-05-07T16:13:26,398 adding 'galaxy/tool_util/verify/interactor.py' 2024-05-07T16:13:26,401 adding 'galaxy/tool_util/verify/script.py' 2024-05-07T16:13:26,403 adding 'galaxy/tool_util/verify/test_config.sample.yml' 2024-05-07T16:13:26,404 adding 'galaxy/tool_util/verify/test_data.py' 2024-05-07T16:13:26,406 adding 'galaxy/tool_util/verify/wait.py' 2024-05-07T16:13:26,408 adding 'galaxy/tool_util/verify/asserts/__init__.py' 2024-05-07T16:13:26,410 adding 'galaxy/tool_util/verify/asserts/_util.py' 2024-05-07T16:13:26,411 adding 'galaxy/tool_util/verify/asserts/archive.py' 2024-05-07T16:13:26,412 adding 'galaxy/tool_util/verify/asserts/hdf5.py' 2024-05-07T16:13:26,413 adding 'galaxy/tool_util/verify/asserts/json.py' 2024-05-07T16:13:26,415 adding 'galaxy/tool_util/verify/asserts/size.py' 2024-05-07T16:13:26,416 adding 'galaxy/tool_util/verify/asserts/tabular.py' 2024-05-07T16:13:26,417 adding 'galaxy/tool_util/verify/asserts/text.py' 2024-05-07T16:13:26,419 adding 'galaxy/tool_util/verify/asserts/xml.py' 2024-05-07T16:13:26,421 adding 'galaxy/tool_util/xsd/LICENSE' 2024-05-07T16:13:26,422 adding 'galaxy/tool_util/xsd/README.md' 2024-05-07T16:13:26,423 adding 'galaxy/tool_util/xsd/galaxy.jxb' 2024-05-07T16:13:26,460 adding 'galaxy/tool_util/xsd/galaxy.xsd' 2024-05-07T16:13:26,466 adding 'galaxy_tool_util-24.0.2.dist-info/LICENSE' 2024-05-07T16:13:26,468 adding 'galaxy_tool_util-24.0.2.dist-info/METADATA' 2024-05-07T16:13:26,470 adding 'galaxy_tool_util-24.0.2.dist-info/WHEEL' 2024-05-07T16:13:26,470 adding 'galaxy_tool_util-24.0.2.dist-info/entry_points.txt' 2024-05-07T16:13:26,471 adding 'galaxy_tool_util-24.0.2.dist-info/top_level.txt' 2024-05-07T16:13:26,474 adding 'galaxy_tool_util-24.0.2.dist-info/RECORD' 2024-05-07T16:13:26,482 removing build/bdist.linux-armv7l/wheel 2024-05-07T16:13:26,622 Building wheel for galaxy-tool-util (pyproject.toml): finished with status 'done' 2024-05-07T16:13:26,635 Created wheel for galaxy-tool-util: filename=galaxy_tool_util-24.0.2-py3-none-any.whl size=417815 sha256=c085d0b1a9def308de290fd6d681b37bb7f37c4e46e042b237db9caf1935b04c 2024-05-07T16:13:26,636 Stored in directory: /tmp/pip-ephem-wheel-cache-x1nmtcxg/wheels/8e/07/b0/24d3d315562224445a47037bfbd0486c2cb314515da483b8a4 2024-05-07T16:13:26,654 Successfully built galaxy-tool-util 2024-05-07T16:13:26,670 Removed build tracker: '/tmp/pip-build-tracker-rrwbi0k1'