2024-05-07T16:13:57,999 Created temporary directory: /tmp/pip-build-tracker-j6sim20v
2024-05-07T16:13:58,000 Initialized build tracking at /tmp/pip-build-tracker-j6sim20v
2024-05-07T16:13:58,001 Created build tracker: /tmp/pip-build-tracker-j6sim20v
2024-05-07T16:13:58,001 Entered build tracker: /tmp/pip-build-tracker-j6sim20v
2024-05-07T16:13:58,002 Created temporary directory: /tmp/pip-wheel-lqk1vxtw
2024-05-07T16:13:58,005 Created temporary directory: /tmp/pip-ephem-wheel-cache-qum0po3e
2024-05-07T16:13:58,028 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-07T16:13:58,031 2 location(s) to search for versions of galaxy-app:
2024-05-07T16:13:58,031 * https://pypi.org/simple/galaxy-app/
2024-05-07T16:13:58,031 * https://www.piwheels.org/simple/galaxy-app/
2024-05-07T16:13:58,032 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/
2024-05-07T16:13:58,033 Getting page https://pypi.org/simple/galaxy-app/
2024-05-07T16:13:58,034 Found index url https://pypi.org/simple/
2024-05-07T16:13:58,249 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json
2024-05-07T16:13:58,257   Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.5.0
2024-05-07T16:13:58,258   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0e/45/8db530ec699e0de1e6307285126e8bba3dca8ffe575e9994b0c56aa01e35/galaxy_app-20.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/)
2024-05-07T16:13:58,258   Found link https://files.pythonhosted.org/packages/39/7b/ed47204e833f922db4fc7e96d8de33650a57856999b95145a9e5414270b1/galaxy-app-20.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.9.0
2024-05-07T16:13:58,259   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/6e/cd07342b2790bc4ec0f3d03eb559fdee76513d00657c2897ad5517615704/galaxy_app-20.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/)
2024-05-07T16:13:58,260   Found link https://files.pythonhosted.org/packages/bb/d4/bbe8b30220b07000291c571508565a6b2c803c8b3580f4edb50dec7dfb25/galaxy-app-21.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 21.9.0
2024-05-07T16:13:58,260   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2a/c8/f3c20efbe004b6968ac2f89cfc60e77d96b0a45844d864f7d4f84e985b6e/galaxy_app-21.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/)
2024-05-07T16:13:58,261   Found link https://files.pythonhosted.org/packages/ac/8b/73350a0f611102667eabde41fa8bcd6ffb49ed5a726f6077366504f8bb42/galaxy-app-22.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 22.1.1
2024-05-07T16:13:58,262   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e4/40/ca62a2cd45b022310bd0d4ce05f5ed3d59e8f994d19e31c3fc0410da4b45/galaxy_app-22.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/)
2024-05-07T16:13:58,263   Found link https://files.pythonhosted.org/packages/89/47/4d9cc66c90213feb9f0a8e10fcea2ab93f66d90f289f5e0d72ef6dafcab9/galaxy-app-23.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.1
2024-05-07T16:13:58,263   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d6/1d/9c9721f6bdcb3de36c2f9946af6639696d33f43a3934d9edd95f00d349e5/galaxy_app-23.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,264   Found link https://files.pythonhosted.org/packages/fc/5e/993fc4df93a146b8e11719fd70d92dddf4b5a2e14c2a5006ad5c7320857e/galaxy-app-23.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.2
2024-05-07T16:13:58,265   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7c/cf/3e8752a5c5858f6a096a04d57f31653c5fdbdcb0740ec4f00d29db037a65/galaxy_app-23.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,266   Found link https://files.pythonhosted.org/packages/86/9a/1c845471521630df79226096bed68473fe2e355985ac4c2830ee0f2d6420/galaxy-app-23.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.3
2024-05-07T16:13:58,267   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/08/19/3c5252502bf8984448c6713825aea0efb9ba4de747eb073568b2679afc94/galaxy_app-23.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,268   Found link https://files.pythonhosted.org/packages/7b/69/05dfb348db46268dfd2096cea8f42d37bb0d5f6e55202f684607fc4fa1e2/galaxy-app-23.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.4
2024-05-07T16:13:58,268   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/12/d3/cd3e8e4b280236df34705ac5745d6cb657593b9b6064e6980df863dbfba0/galaxy_app-23.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,269   Found link https://files.pythonhosted.org/packages/9f/d5/eca55f6fa4a9147f5b72dd6a593a0c36280f2bc3a5bf95d95cb4112f92a8/galaxy-app-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.5
2024-05-07T16:13:58,270   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d4/26/d168ceb65d4c9d6ef67c88f061d8eb88d7e845a2f10f10b7d1270d5acb37/galaxy_app-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,270   Found link https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.6
2024-05-07T16:13:58,271   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e8/73/abf8595c6097c3b6ffbe95cd4cdbf404a5cf6ad7b292545cc4d1cb87d4a0/galaxy_app-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,272   Found link https://files.pythonhosted.org/packages/41/07/083718b816053a9f97e5e678ac9bed14b31d3a224026170e58be13f37fba/galaxy-app-23.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.dev0
2024-05-07T16:13:58,273   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7a/89/50a4575db66b638bee6f241f902f556eaa27855d7f0fd3323551bdb09f5d/galaxy_app-23.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,274   Found link https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.1
2024-05-07T16:13:58,275   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c8/f7/a84fe8d48fb96f5e96981ca3f60491f856efa4f2463722fa75ad8dcec7a7/galaxy_app-23.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,276   Found link https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.2
2024-05-07T16:13:58,276   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/54/ef/8264cbce6eca0cd434001d62c838cd4798aa478a6af7879b83299c28193d/galaxy_app-23.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,277   Found link https://files.pythonhosted.org/packages/26/ba/0995031cda92688ec41ab4ad0cc11b148fd5caecf21e414928464bea82f8/galaxy-app-23.1.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.3
2024-05-07T16:13:58,278   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/03/0f/747509841f1baad002247bb2956344ce1ebb9703ab941c149f5456b32c31/galaxy_app-23.1.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,279   Found link https://files.pythonhosted.org/packages/de/63/8be8d20cf1c913da72f9b69af53b711dccc0a998718c2abf93349bdf5301/galaxy-app-23.1.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.4
2024-05-07T16:13:58,280   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/60/97/43d48dc8d2d332faab8a4439b68c7cbbd528f7b9d48c8a0092d60cc5124d/galaxy_app-23.1.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,280   Found link https://files.pythonhosted.org/packages/2f/6c/b024d7c86132a8926709338c49bef02ac75821d997e60030744cf4e65ed0/galaxy-app-23.2.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.2.1
2024-05-07T16:13:58,281   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/b9/89/c6d435aa81c1e8bfc9a11ffe2ce1212d1f7251be748aa684ad150a337b25/galaxy_app-23.2.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,282   Found link https://files.pythonhosted.org/packages/10/8a/8722621711150c5522028ae4f5ecd1a7e12cd7e430a6b9cf2f8f4d1ff409/galaxy-app-24.0.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.0
2024-05-07T16:13:58,282   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/23/72/37370b092b6ea34491efdb854990cba6068b4a3b6eef26947c2ab1274f69/galaxy_app-24.0.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8)
2024-05-07T16:13:58,283   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/8a/2b/e66673f317e13ca426074d88f5180a2836f281f3c292275db2fdb44d15fe/galaxy_app-24.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8)
2024-05-07T16:13:58,284   Found link https://files.pythonhosted.org/packages/1b/a9/861c3fdb557700065a00872db1752b8f4797de95325630397f96c99146bd/galaxy_app-24.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.1
2024-05-07T16:13:58,285   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0a/a5/2c0d3d616a72e3ee35b36a3aa9d449b8c174fc181a993c01d4078e6443b1/galaxy_app-24.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8)
2024-05-07T16:13:58,286   Found link https://files.pythonhosted.org/packages/31/53/8f944700770dbafae351efe5557d476c3ad478f8dddb0cf8c0e5d0269bd8/galaxy_app-24.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.2
2024-05-07T16:13:58,287 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/
2024-05-07T16:13:58,287 Getting page https://www.piwheels.org/simple/galaxy-app/
2024-05-07T16:13:58,289 Found index url https://www.piwheels.org/simple/
2024-05-07T16:13:58,481 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html
2024-05-07T16:13:58,486   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-24.0.1-py3-none-any.whl#sha256=a203d2b0535783470077aeef294bcf5ef0664ea223202a97c46f96899a1d723b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8)
2024-05-07T16:13:58,487   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-24.0.0-py3-none-any.whl#sha256=2b9d3bce166e31abb2ffc8c574fc111268b8f1a67dea6324c88de325d8b110d4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8)
2024-05-07T16:13:58,488   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.2.1-py3-none-any.whl#sha256=e37a8c0551dded98be57102c74e99152b15aa0369a4b28287c95e0b0e1b0c7f9 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,489   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.4-py3-none-any.whl#sha256=a0d156aebf5163d1c632ec4c512d86f60cd8848ff63bfdee5e72f0b2b1ea9942 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,489   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.3-py3-none-any.whl#sha256=31efbe6b15793cf934e6d3fa0acf8fa040a1110373f2af602c1384f2fddc61a5 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,490   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.2-py3-none-any.whl#sha256=af60799c6e1c91da02a7b4d1dc70fa1285c49cbb474f15dad9f74fc50ef0d214 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,490   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.1-py3-none-any.whl#sha256=c2a889aa873a367630a84277ea40ae425c8ccfb9d29770e60ed120e11f16287b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,491   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.dev0-py3-none-any.whl#sha256=c9198ae7cb3065b124471a6e7c9b40207d05b9dd860896249bd107558b62eabd (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,491   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.6-py3-none-any.whl#sha256=2c529481de193d71a8c059551d9713d602fa4e7817856a393fc657711fd26a80 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,492   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,492   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,493   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,493   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,494   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-05-07T16:13:58,495   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/)
2024-05-07T16:13:58,495   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/)
2024-05-07T16:13:58,496 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/
2024-05-07T16:13:58,497 Skipping link: not a file: https://pypi.org/simple/galaxy-app/
2024-05-07T16:13:58,517 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates
2024-05-07T16:13:58,535 Collecting galaxy-app==24.0.2
2024-05-07T16:13:58,537   Created temporary directory: /tmp/pip-unpack-g5totm1k
2024-05-07T16:13:58,762   Downloading galaxy_app-24.0.2.tar.gz (1.2 MB)
2024-05-07T16:14:00,244   Added galaxy-app==24.0.2 from https://files.pythonhosted.org/packages/31/53/8f944700770dbafae351efe5557d476c3ad478f8dddb0cf8c0e5d0269bd8/galaxy_app-24.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-j6sim20v'
2024-05-07T16:14:00,247   Created temporary directory: /tmp/pip-build-env-i3qay6fp
2024-05-07T16:14:00,251   Installing build dependencies: started
2024-05-07T16:14:00,252   Running command pip subprocess to install build dependencies
2024-05-07T16:14:01,428   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-05-07T16:14:01,907   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-07T16:14:03,551   Collecting setuptools
2024-05-07T16:14:03,574     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB)
2024-05-07T16:14:06,218   Installing collected packages: setuptools
2024-05-07T16:14:08,651   Successfully installed setuptools-69.5.1
2024-05-07T16:14:09,178   Installing build dependencies: finished with status 'done'
2024-05-07T16:14:09,182   Getting requirements to build wheel: started
2024-05-07T16:14:09,183   Running command Getting requirements to build wheel
2024-05-07T16:14:09,886   running egg_info
2024-05-07T16:14:09,890   writing galaxy_app.egg-info/PKG-INFO
2024-05-07T16:14:09,896   writing dependency_links to galaxy_app.egg-info/dependency_links.txt
2024-05-07T16:14:09,898   writing entry points to galaxy_app.egg-info/entry_points.txt
2024-05-07T16:14:09,900   writing requirements to galaxy_app.egg-info/requires.txt
2024-05-07T16:14:09,901   writing top-level names to galaxy_app.egg-info/top_level.txt
2024-05-07T16:14:09,978   reading manifest file 'galaxy_app.egg-info/SOURCES.txt'
2024-05-07T16:14:10,025   reading manifest template 'MANIFEST.in'
2024-05-07T16:14:10,528   adding license file 'LICENSE'
2024-05-07T16:14:10,556   writing manifest file 'galaxy_app.egg-info/SOURCES.txt'
2024-05-07T16:14:10,642   Getting requirements to build wheel: finished with status 'done'
2024-05-07T16:14:10,650   Installing backend dependencies: started
2024-05-07T16:14:10,652   Running command pip subprocess to install backend dependencies
2024-05-07T16:14:11,779   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-05-07T16:14:12,258   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-07T16:14:12,735   Collecting wheel
2024-05-07T16:14:12,749     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-05-07T16:14:15,021   Installing collected packages: wheel
2024-05-07T16:14:15,245     Creating /tmp/pip-build-env-i3qay6fp/normal/local/bin
2024-05-07T16:14:15,247     changing mode of /tmp/pip-build-env-i3qay6fp/normal/local/bin/wheel to 755
2024-05-07T16:14:15,258   Successfully installed wheel-0.43.0
2024-05-07T16:14:15,736   Installing backend dependencies: finished with status 'done'
2024-05-07T16:14:15,738   Created temporary directory: /tmp/pip-modern-metadata-rols9nx_
2024-05-07T16:14:15,745   Preparing metadata (pyproject.toml): started
2024-05-07T16:14:15,746   Running command Preparing metadata (pyproject.toml)
2024-05-07T16:14:16,351   running dist_info
2024-05-07T16:14:16,355   creating /tmp/pip-modern-metadata-rols9nx_/galaxy_app.egg-info
2024-05-07T16:14:16,359   writing /tmp/pip-modern-metadata-rols9nx_/galaxy_app.egg-info/PKG-INFO
2024-05-07T16:14:16,366   writing dependency_links to /tmp/pip-modern-metadata-rols9nx_/galaxy_app.egg-info/dependency_links.txt
2024-05-07T16:14:16,368   writing entry points to /tmp/pip-modern-metadata-rols9nx_/galaxy_app.egg-info/entry_points.txt
2024-05-07T16:14:16,370   writing requirements to /tmp/pip-modern-metadata-rols9nx_/galaxy_app.egg-info/requires.txt
2024-05-07T16:14:16,371   writing top-level names to /tmp/pip-modern-metadata-rols9nx_/galaxy_app.egg-info/top_level.txt
2024-05-07T16:14:16,373   writing manifest file '/tmp/pip-modern-metadata-rols9nx_/galaxy_app.egg-info/SOURCES.txt'
2024-05-07T16:14:16,468   reading manifest file '/tmp/pip-modern-metadata-rols9nx_/galaxy_app.egg-info/SOURCES.txt'
2024-05-07T16:14:16,470   reading manifest template 'MANIFEST.in'
2024-05-07T16:14:16,982   adding license file 'LICENSE'
2024-05-07T16:14:17,001   writing manifest file '/tmp/pip-modern-metadata-rols9nx_/galaxy_app.egg-info/SOURCES.txt'
2024-05-07T16:14:17,003   creating '/tmp/pip-modern-metadata-rols9nx_/galaxy_app-24.0.2.dist-info'
2024-05-07T16:14:17,201   Preparing metadata (pyproject.toml): finished with status 'done'
2024-05-07T16:14:17,210   Source in /tmp/pip-wheel-lqk1vxtw/galaxy-app_852899106b124447a0cdbd374b1a76fb has version 24.0.2, which satisfies requirement galaxy-app==24.0.2 from https://files.pythonhosted.org/packages/31/53/8f944700770dbafae351efe5557d476c3ad478f8dddb0cf8c0e5d0269bd8/galaxy_app-24.0.2.tar.gz
2024-05-07T16:14:17,211   Removed galaxy-app==24.0.2 from https://files.pythonhosted.org/packages/31/53/8f944700770dbafae351efe5557d476c3ad478f8dddb0cf8c0e5d0269bd8/galaxy_app-24.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-j6sim20v'
2024-05-07T16:14:17,222 Created temporary directory: /tmp/pip-unpack-7mu9g18g
2024-05-07T16:14:17,223 Created temporary directory: /tmp/pip-unpack-eu6a6i9c
2024-05-07T16:14:17,274 Building wheels for collected packages: galaxy-app
2024-05-07T16:14:17,279   Created temporary directory: /tmp/pip-wheel-uv8i4714
2024-05-07T16:14:17,279   Destination directory: /tmp/pip-wheel-uv8i4714
2024-05-07T16:14:17,282   Building wheel for galaxy-app (pyproject.toml): started
2024-05-07T16:14:17,283   Running command Building wheel for galaxy-app (pyproject.toml)
2024-05-07T16:14:17,919   running bdist_wheel
2024-05-07T16:14:17,965   running build
2024-05-07T16:14:17,965   running build_py
2024-05-07T16:14:17,972   creating build
2024-05-07T16:14:17,973   creating build/lib
2024-05-07T16:14:17,974   creating build/lib/tool_shed_client
2024-05-07T16:14:17,975   copying tool_shed_client/trs_util.py -> build/lib/tool_shed_client
2024-05-07T16:14:17,977   copying tool_shed_client/__init__.py -> build/lib/tool_shed_client
2024-05-07T16:14:17,979   creating build/lib/galaxy
2024-05-07T16:14:17,980   copying galaxy/queue_worker.py -> build/lib/galaxy
2024-05-07T16:14:17,983   copying galaxy/di.py -> build/lib/galaxy
2024-05-07T16:14:17,985   copying galaxy/main.py -> build/lib/galaxy
2024-05-07T16:14:17,987   copying galaxy/__init__.py -> build/lib/galaxy
2024-05-07T16:14:17,988   copying galaxy/main_config.py -> build/lib/galaxy
2024-05-07T16:14:17,990   copying galaxy/structured_app.py -> build/lib/galaxy
2024-05-07T16:14:17,993   copying galaxy/app.py -> build/lib/galaxy
2024-05-07T16:14:17,996   copying galaxy/queues.py -> build/lib/galaxy
2024-05-07T16:14:17,999   copying galaxy/config_watchers.py -> build/lib/galaxy
2024-05-07T16:14:18,002   creating build/lib/galaxy_ext
2024-05-07T16:14:18,003   copying galaxy_ext/__init__.py -> build/lib/galaxy_ext
2024-05-07T16:14:18,007   creating build/lib/tool_shed_client/schema
2024-05-07T16:14:18,008   copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema
2024-05-07T16:14:18,011   copying tool_shed_client/schema/trs.py -> build/lib/tool_shed_client/schema
2024-05-07T16:14:18,015   copying tool_shed_client/schema/trs_service_info.py -> build/lib/tool_shed_client/schema
2024-05-07T16:14:18,018   creating build/lib/galaxy/actions
2024-05-07T16:14:18,019   copying galaxy/actions/__init__.py -> build/lib/galaxy/actions
2024-05-07T16:14:18,021   copying galaxy/actions/library.py -> build/lib/galaxy/actions
2024-05-07T16:14:18,024   creating build/lib/galaxy/webhooks
2024-05-07T16:14:18,025   copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks
2024-05-07T16:14:18,028   creating build/lib/galaxy/tools
2024-05-07T16:14:18,029   copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,032   copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,034   copying galaxy/tools/repositories.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,035   copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,038   copying galaxy/tools/biotools.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,039   copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,042   copying galaxy/tools/errors.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,044   copying galaxy/tools/cache.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,046   copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,048   copying galaxy/tools/__init__.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,052   copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,054   copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,056   copying galaxy/tools/execute.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,059   copying galaxy/tools/test.py -> build/lib/galaxy/tools
2024-05-07T16:14:18,061   creating build/lib/galaxy/jobs
2024-05-07T16:14:18,062   copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs
2024-05-07T16:14:18,066   copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs
2024-05-07T16:14:18,071   copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs
2024-05-07T16:14:18,078   copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs
2024-05-07T16:14:18,080   copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs
2024-05-07T16:14:18,082   copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs
2024-05-07T16:14:18,084   copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs
2024-05-07T16:14:18,086   copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs
2024-05-07T16:14:18,089   creating build/lib/galaxy/work
2024-05-07T16:14:18,090   copying galaxy/work/__init__.py -> build/lib/galaxy/work
2024-05-07T16:14:18,092   copying galaxy/work/context.py -> build/lib/galaxy/work
2024-05-07T16:14:18,095   creating build/lib/galaxy/carbon_emissions
2024-05-07T16:14:18,096   copying galaxy/carbon_emissions/__init__.py -> build/lib/galaxy/carbon_emissions
2024-05-07T16:14:18,098   creating build/lib/galaxy/workflow
2024-05-07T16:14:18,100   copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow
2024-05-07T16:14:18,102   copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow
2024-05-07T16:14:18,106   copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow
2024-05-07T16:14:18,110   copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow
2024-05-07T16:14:18,114   copying galaxy/workflow/render.py -> build/lib/galaxy/workflow
2024-05-07T16:14:18,121   copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow
2024-05-07T16:14:18,125   copying galaxy/workflow/run.py -> build/lib/galaxy/workflow
2024-05-07T16:14:18,130   copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow
2024-05-07T16:14:18,135   copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow
2024-05-07T16:14:18,138   creating build/lib/galaxy/authnz
2024-05-07T16:14:18,138   copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz
2024-05-07T16:14:18,141   copying galaxy/authnz/custos_authnz.py -> build/lib/galaxy/authnz
2024-05-07T16:14:18,144   copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz
2024-05-07T16:14:18,146   copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz
2024-05-07T16:14:18,149   copying galaxy/authnz/util.py -> build/lib/galaxy/authnz
2024-05-07T16:14:18,151   creating build/lib/galaxy/short_term_storage
2024-05-07T16:14:18,153   copying galaxy/short_term_storage/__init__.py -> build/lib/galaxy/short_term_storage
2024-05-07T16:14:18,156   creating build/lib/galaxy/forms
2024-05-07T16:14:18,157   copying galaxy/forms/__init__.py -> build/lib/galaxy/forms
2024-05-07T16:14:18,158   copying galaxy/forms/forms.py -> build/lib/galaxy/forms
2024-05-07T16:14:18,163   creating build/lib/galaxy/managers
2024-05-07T16:14:18,163   copying galaxy/managers/workflows.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,168   copying galaxy/managers/groups.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,170   copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,172   copying galaxy/managers/datasets.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,174   copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,177   copying galaxy/managers/hdas.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,180   copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,182   copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,184   copying galaxy/managers/citations.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,186   copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,188   copying galaxy/managers/collections.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,191   copying galaxy/managers/quotas.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,193   copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,195   copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,197   copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,199   copying galaxy/managers/ratable.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,201   copying galaxy/managers/cloudauthzs.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,203   copying galaxy/managers/pages.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,206   copying galaxy/managers/genomes.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,208   copying galaxy/managers/configuration.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,210   copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,212   copying galaxy/managers/libraries.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,215   copying galaxy/managers/taggable.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,217   copying galaxy/managers/folders.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,220   copying galaxy/managers/cloud.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,222   copying galaxy/managers/group_users.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,224   copying galaxy/managers/__init__.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,226   copying galaxy/managers/context.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,228   copying galaxy/managers/notification.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,230   copying galaxy/managers/jobs.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,233   copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,235   copying galaxy/managers/users.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,238   copying galaxy/managers/tools.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,240   copying galaxy/managers/roles.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,242   copying galaxy/managers/session.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,244   copying galaxy/managers/metrics.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,246   copying galaxy/managers/tasks.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,248   copying galaxy/managers/forms.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,250   copying galaxy/managers/sharable.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,252   copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,255   copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,257   copying galaxy/managers/item_tags.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,259   copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,261   copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,263   copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,265   copying galaxy/managers/licenses.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,267   copying galaxy/managers/histories.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,269   copying galaxy/managers/dbkeys.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,271   copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,273   copying galaxy/managers/executables.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,275   copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,277   copying galaxy/managers/lddas.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,278   copying galaxy/managers/secured.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,281   copying galaxy/managers/deletable.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,282   copying galaxy/managers/tags.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,284   copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,287   copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,289   copying galaxy/managers/base.py -> build/lib/galaxy/managers
2024-05-07T16:14:18,292   creating build/lib/galaxy/visualization
2024-05-07T16:14:18,293   copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization
2024-05-07T16:14:18,295   copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization
2024-05-07T16:14:18,298   creating build/lib/galaxy/dependencies
2024-05-07T16:14:18,299   copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies
2024-05-07T16:14:18,301   creating build/lib/galaxy/tool_shed
2024-05-07T16:14:18,302   copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed
2024-05-07T16:14:18,304   copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed
2024-05-07T16:14:18,306   copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed
2024-05-07T16:14:18,308   creating build/lib/galaxy/app_unittest_utils
2024-05-07T16:14:18,309   copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils
2024-05-07T16:14:18,311   copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils
2024-05-07T16:14:18,313   copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils
2024-05-07T16:14:18,315   copying galaxy/app_unittest_utils/toolbox_support.py -> build/lib/galaxy/app_unittest_utils
2024-05-07T16:14:18,317   creating build/lib/galaxy/celery
2024-05-07T16:14:18,318   copying galaxy/celery/__init__.py -> build/lib/galaxy/celery
2024-05-07T16:14:18,321   copying galaxy/celery/tasks.py -> build/lib/galaxy/celery
2024-05-07T16:14:18,323   copying galaxy/celery/base_task.py -> build/lib/galaxy/celery
2024-05-07T16:14:18,325   copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery
2024-05-07T16:14:18,327   creating build/lib/galaxy/tools/data_manager
2024-05-07T16:14:18,328   copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager
2024-05-07T16:14:18,330   copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager
2024-05-07T16:14:18,333   creating build/lib/galaxy/tools/filters
2024-05-07T16:14:18,334   copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters
2024-05-07T16:14:18,337   creating build/lib/galaxy/tools/actions
2024-05-07T16:14:18,338   copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions
2024-05-07T16:14:18,339   copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions
2024-05-07T16:14:18,342   copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions
2024-05-07T16:14:18,344   copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions
2024-05-07T16:14:18,348   copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions
2024-05-07T16:14:18,350   copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions
2024-05-07T16:14:18,351   copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions
2024-05-07T16:14:18,353   copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions
2024-05-07T16:14:18,356   creating build/lib/galaxy/tools/search
2024-05-07T16:14:18,357   copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search
2024-05-07T16:14:18,359   creating build/lib/galaxy/tools/util
2024-05-07T16:14:18,360   copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util
2024-05-07T16:14:18,362   copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util
2024-05-07T16:14:18,365   creating build/lib/galaxy/tools/data
2024-05-07T16:14:18,366   copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data
2024-05-07T16:14:18,368   creating build/lib/galaxy/tools/error_reports
2024-05-07T16:14:18,370   copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports
2024-05-07T16:14:18,372   creating build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,373   copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,375   copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,377   copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,380   copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,382   copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,384   copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,386   copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,388   copying galaxy/tools/parameters/cancelable_request.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,390   copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,395   copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,397   copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,399   copying galaxy/tools/parameters/history_query.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,401   copying galaxy/tools/parameters/workflow_utils.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,403   copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters
2024-05-07T16:14:18,406   creating build/lib/galaxy/tools/expressions
2024-05-07T16:14:18,407   copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions
2024-05-07T16:14:18,409   copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions
2024-05-07T16:14:18,411   copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions
2024-05-07T16:14:18,412   copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions
2024-05-07T16:14:18,414   creating build/lib/galaxy/tools/imp_exp
2024-05-07T16:14:18,415   copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp
2024-05-07T16:14:18,418   copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp
2024-05-07T16:14:18,420   copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp
2024-05-07T16:14:18,424   creating build/lib/galaxy/tools/util/galaxyops
2024-05-07T16:14:18,425   copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops
2024-05-07T16:14:18,428   creating build/lib/galaxy/tools/error_reports/plugins
2024-05-07T16:14:18,429   copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins
2024-05-07T16:14:18,432   copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins
2024-05-07T16:14:18,434   copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins
2024-05-07T16:14:18,435   copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins
2024-05-07T16:14:18,437   copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins
2024-05-07T16:14:18,439   copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins
2024-05-07T16:14:18,441   copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins
2024-05-07T16:14:18,443   copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins
2024-05-07T16:14:18,444   copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins
2024-05-07T16:14:18,447   creating build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,448   copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,450   copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,453   copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,456   copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,458   copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,460   copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,462   copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,464   copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,467   copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,469   copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,471   copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,473   copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,475   copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,478   copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,480   copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners
2024-05-07T16:14:18,483   creating build/lib/galaxy/jobs/splitters
2024-05-07T16:14:18,484   copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters
2024-05-07T16:14:18,486   copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters
2024-05-07T16:14:18,488   copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters
2024-05-07T16:14:18,490   creating build/lib/galaxy/jobs/rules
2024-05-07T16:14:18,491   copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules
2024-05-07T16:14:18,493   creating build/lib/galaxy/jobs/runners/state_handlers
2024-05-07T16:14:18,494   copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers
2024-05-07T16:14:18,496   copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers
2024-05-07T16:14:18,498   copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers
2024-05-07T16:14:18,500   creating build/lib/galaxy/jobs/runners/util
2024-05-07T16:14:18,501   copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util
2024-05-07T16:14:18,503   copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util
2024-05-07T16:14:18,505   copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util
2024-05-07T16:14:18,506   copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util
2024-05-07T16:14:18,508   copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util
2024-05-07T16:14:18,510   copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util
2024-05-07T16:14:18,511   copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util
2024-05-07T16:14:18,514   copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util
2024-05-07T16:14:18,517   creating build/lib/galaxy/jobs/runners/util/cli
2024-05-07T16:14:18,518   copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli
2024-05-07T16:14:18,519   copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli
2024-05-07T16:14:18,521   creating build/lib/galaxy/jobs/runners/util/condor
2024-05-07T16:14:18,522   copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor
2024-05-07T16:14:18,524   creating build/lib/galaxy/jobs/runners/util/job_script
2024-05-07T16:14:18,525   copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script
2024-05-07T16:14:18,527   creating build/lib/galaxy/jobs/runners/util/cli/shell
2024-05-07T16:14:18,528   copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell
2024-05-07T16:14:18,530   copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell
2024-05-07T16:14:18,532   copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell
2024-05-07T16:14:18,534   creating build/lib/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:18,535   copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:18,537   copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:18,539   copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:18,541   copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:18,543   copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:18,545   copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:18,547   creating build/lib/galaxy/workflow/schedulers
2024-05-07T16:14:18,548   copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers
2024-05-07T16:14:18,550   copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers
2024-05-07T16:14:18,554   creating build/lib/galaxy/workflow/refactor
2024-05-07T16:14:18,555   copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor
2024-05-07T16:14:18,559   copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor
2024-05-07T16:14:18,562   copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor
2024-05-07T16:14:18,566   creating build/lib/galaxy/workflow/resources
2024-05-07T16:14:18,567   copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources
2024-05-07T16:14:18,570   creating build/lib/galaxy/workflow/reports
2024-05-07T16:14:18,571   copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports
2024-05-07T16:14:18,576   creating build/lib/galaxy/workflow/reports/generators
2024-05-07T16:14:18,577   copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators
2024-05-07T16:14:18,579   copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators
2024-05-07T16:14:18,581   creating build/lib/galaxy/visualization/genome
2024-05-07T16:14:18,582   copying galaxy/visualization/genome/__init__.py -> build/lib/galaxy/visualization/genome
2024-05-07T16:14:18,584   creating build/lib/galaxy/visualization/data_providers
2024-05-07T16:14:18,585   copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers
2024-05-07T16:14:18,589   copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers
2024-05-07T16:14:18,592   copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers
2024-05-07T16:14:18,593   copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers
2024-05-07T16:14:18,595   copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers
2024-05-07T16:14:18,598   creating build/lib/galaxy/visualization/plugins
2024-05-07T16:14:18,599   copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins
2024-05-07T16:14:18,603   copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins
2024-05-07T16:14:18,604   copying galaxy/visualization/plugins/utils.py -> build/lib/galaxy/visualization/plugins
2024-05-07T16:14:18,606   copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins
2024-05-07T16:14:18,609   copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins
2024-05-07T16:14:18,611   copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins
2024-05-07T16:14:18,614   creating build/lib/galaxy/visualization/tracks
2024-05-07T16:14:18,615   copying galaxy/visualization/tracks/__init__.py -> build/lib/galaxy/visualization/tracks
2024-05-07T16:14:18,617   creating build/lib/galaxy/visualization/data_providers/phyloviz
2024-05-07T16:14:18,618   copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2024-05-07T16:14:18,620   copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2024-05-07T16:14:18,622   copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2024-05-07T16:14:18,624   copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2024-05-07T16:14:18,626   copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2024-05-07T16:14:18,629   creating build/lib/galaxy/tool_shed/tools
2024-05-07T16:14:18,629   copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools
2024-05-07T16:14:18,632   copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools
2024-05-07T16:14:18,633   copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools
2024-05-07T16:14:18,636   creating build/lib/galaxy/tool_shed/util
2024-05-07T16:14:18,637   copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util
2024-05-07T16:14:18,639   copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util
2024-05-07T16:14:18,642   copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util
2024-05-07T16:14:18,644   copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util
2024-05-07T16:14:18,645   copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util
2024-05-07T16:14:18,649   copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util
2024-05-07T16:14:18,652   copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util
2024-05-07T16:14:18,655   copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util
2024-05-07T16:14:18,659   copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util
2024-05-07T16:14:18,661   copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util
2024-05-07T16:14:18,664   copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util
2024-05-07T16:14:18,666   creating build/lib/galaxy/tool_shed/unittest_utils
2024-05-07T16:14:18,667   copying galaxy/tool_shed/unittest_utils/__init__.py -> build/lib/galaxy/tool_shed/unittest_utils
2024-05-07T16:14:18,670   creating build/lib/galaxy/tool_shed/galaxy_install
2024-05-07T16:14:18,670   copying galaxy/tool_shed/galaxy_install/client.py -> build/lib/galaxy/tool_shed/galaxy_install
2024-05-07T16:14:18,672   copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install
2024-05-07T16:14:18,674   copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install
2024-05-07T16:14:18,676   copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install
2024-05-07T16:14:18,679   copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install
2024-05-07T16:14:18,683   creating build/lib/galaxy/tool_shed/metadata
2024-05-07T16:14:18,684   copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata
2024-05-07T16:14:18,686   copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata
2024-05-07T16:14:18,691   creating build/lib/galaxy/tool_shed/galaxy_install/tools
2024-05-07T16:14:18,691   copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools
2024-05-07T16:14:18,693   copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools
2024-05-07T16:14:18,696   copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools
2024-05-07T16:14:18,699   creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies
2024-05-07T16:14:18,699   copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies
2024-05-07T16:14:18,701   copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies
2024-05-07T16:14:18,704   creating build/lib/galaxy/tool_shed/galaxy_install/metadata
2024-05-07T16:14:18,705   copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata
2024-05-07T16:14:18,708   copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata
2024-05-07T16:14:18,710   creating build/lib/galaxy_ext/container_monitor
2024-05-07T16:14:18,710   copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor
2024-05-07T16:14:18,712   copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor
2024-05-07T16:14:18,714   creating build/lib/galaxy_ext/expressions
2024-05-07T16:14:18,715   copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions
2024-05-07T16:14:18,717   copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions
2024-05-07T16:14:18,719   creating build/lib/galaxy_ext/metadata
2024-05-07T16:14:18,720   copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata
2024-05-07T16:14:18,722   copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata
2024-05-07T16:14:18,724   running egg_info
2024-05-07T16:14:18,727   writing galaxy_app.egg-info/PKG-INFO
2024-05-07T16:14:18,735   writing dependency_links to galaxy_app.egg-info/dependency_links.txt
2024-05-07T16:14:18,737   writing entry points to galaxy_app.egg-info/entry_points.txt
2024-05-07T16:14:18,739   writing requirements to galaxy_app.egg-info/requires.txt
2024-05-07T16:14:18,740   writing top-level names to galaxy_app.egg-info/top_level.txt
2024-05-07T16:14:18,798   reading manifest file 'galaxy_app.egg-info/SOURCES.txt'
2024-05-07T16:14:18,812   reading manifest template 'MANIFEST.in'
2024-05-07T16:14:19,363   adding license file 'LICENSE'
2024-05-07T16:14:19,390   writing manifest file 'galaxy_app.egg-info/SOURCES.txt'
2024-05-07T16:14:19,396   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration.
2024-05-07T16:14:19,397   !!

2024-05-07T16:14:19,398           ********************************************************************************
2024-05-07T16:14:19,398           ############################
2024-05-07T16:14:19,399           # Package would be ignored #
2024-05-07T16:14:19,399           ############################
2024-05-07T16:14:19,399           Python recognizes 'galaxy.tools.bundled' as an importable package[^1],
2024-05-07T16:14:19,400           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,401           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,401           package, please make sure that 'galaxy.tools.bundled' is explicitly added
2024-05-07T16:14:19,402           to the `packages` configuration field.

2024-05-07T16:14:19,403           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,403           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,404           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,405           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,406           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,407           If you don't want 'galaxy.tools.bundled' to be distributed and are
2024-05-07T16:14:19,408           already explicitly excluding 'galaxy.tools.bundled' via
2024-05-07T16:14:19,408           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,409           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,410           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,411           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,413           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,415           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,416                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,417                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,418                 directory, all directories are treated like packages.
2024-05-07T16:14:19,419           ********************************************************************************

2024-05-07T16:14:19,420   !!
2024-05-07T16:14:19,421     check.warn(importable)
2024-05-07T16:14:19,421   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration.
2024-05-07T16:14:19,422   !!

2024-05-07T16:14:19,423           ********************************************************************************
2024-05-07T16:14:19,423           ############################
2024-05-07T16:14:19,424           # Package would be ignored #
2024-05-07T16:14:19,425           ############################
2024-05-07T16:14:19,425           Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1],
2024-05-07T16:14:19,426           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,427           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,428           package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added
2024-05-07T16:14:19,429           to the `packages` configuration field.

2024-05-07T16:14:19,430           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,430           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,431           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,432           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,432           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,433           If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are
2024-05-07T16:14:19,434           already explicitly excluding 'galaxy.tools.bundled.data_export' via
2024-05-07T16:14:19,434           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,435           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,435           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,436           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,437           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,438           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,439                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,439                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,440                 directory, all directories are treated like packages.
2024-05-07T16:14:19,440           ********************************************************************************

2024-05-07T16:14:19,441   !!
2024-05-07T16:14:19,441     check.warn(importable)
2024-05-07T16:14:19,442   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration.
2024-05-07T16:14:19,442   !!

2024-05-07T16:14:19,443           ********************************************************************************
2024-05-07T16:14:19,444           ############################
2024-05-07T16:14:19,445           # Package would be ignored #
2024-05-07T16:14:19,445           ############################
2024-05-07T16:14:19,446           Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1],
2024-05-07T16:14:19,447           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,448           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,449           package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added
2024-05-07T16:14:19,449           to the `packages` configuration field.

2024-05-07T16:14:19,451           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,452           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,452           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,453           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,454           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,455           If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are
2024-05-07T16:14:19,456           already explicitly excluding 'galaxy.tools.bundled.data_source' via
2024-05-07T16:14:19,457           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,457           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,458           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,459           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,460           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,461           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,462                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,462                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,463                 directory, all directories are treated like packages.
2024-05-07T16:14:19,463           ********************************************************************************

2024-05-07T16:14:19,464   !!
2024-05-07T16:14:19,464     check.warn(importable)
2024-05-07T16:14:19,465   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration.
2024-05-07T16:14:19,465   !!

2024-05-07T16:14:19,466           ********************************************************************************
2024-05-07T16:14:19,466           ############################
2024-05-07T16:14:19,467           # Package would be ignored #
2024-05-07T16:14:19,467           ############################
2024-05-07T16:14:19,468           Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1],
2024-05-07T16:14:19,468           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,469           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,469           package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added
2024-05-07T16:14:19,470           to the `packages` configuration field.

2024-05-07T16:14:19,471           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,471           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,472           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,473           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,474           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,475           If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are
2024-05-07T16:14:19,476           already explicitly excluding 'galaxy.tools.bundled.expression_tools' via
2024-05-07T16:14:19,476           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,477           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,477           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,478           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,479           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,481           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,481                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,482                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,482                 directory, all directories are treated like packages.
2024-05-07T16:14:19,483           ********************************************************************************

2024-05-07T16:14:19,484   !!
2024-05-07T16:14:19,485     check.warn(importable)
2024-05-07T16:14:19,485   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration.
2024-05-07T16:14:19,486   !!

2024-05-07T16:14:19,487           ********************************************************************************
2024-05-07T16:14:19,487           ############################
2024-05-07T16:14:19,488           # Package would be ignored #
2024-05-07T16:14:19,489           ############################
2024-05-07T16:14:19,489           Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1],
2024-05-07T16:14:19,489           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,490           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,491           package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added
2024-05-07T16:14:19,491           to the `packages` configuration field.

2024-05-07T16:14:19,492           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,492           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,493           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,494           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,495           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,496           If you don't want 'galaxy.tools.bundled.extract' to be distributed and are
2024-05-07T16:14:19,496           already explicitly excluding 'galaxy.tools.bundled.extract' via
2024-05-07T16:14:19,497           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,497           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,498           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,499           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,500           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,502           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,502                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,503                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,503                 directory, all directories are treated like packages.
2024-05-07T16:14:19,504           ********************************************************************************

2024-05-07T16:14:19,505   !!
2024-05-07T16:14:19,506     check.warn(importable)
2024-05-07T16:14:19,506   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration.
2024-05-07T16:14:19,507   !!

2024-05-07T16:14:19,508           ********************************************************************************
2024-05-07T16:14:19,508           ############################
2024-05-07T16:14:19,509           # Package would be ignored #
2024-05-07T16:14:19,510           ############################
2024-05-07T16:14:19,510           Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1],
2024-05-07T16:14:19,511           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,512           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,512           package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added
2024-05-07T16:14:19,513           to the `packages` configuration field.

2024-05-07T16:14:19,514           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,514           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,515           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,516           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,517           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,518           If you don't want 'galaxy.tools.bundled.filters' to be distributed and are
2024-05-07T16:14:19,518           already explicitly excluding 'galaxy.tools.bundled.filters' via
2024-05-07T16:14:19,519           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,519           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,520           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,521           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,522           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,523           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,524                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,524                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,525                 directory, all directories are treated like packages.
2024-05-07T16:14:19,525           ********************************************************************************

2024-05-07T16:14:19,526   !!
2024-05-07T16:14:19,527     check.warn(importable)
2024-05-07T16:14:19,527   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration.
2024-05-07T16:14:19,528   !!

2024-05-07T16:14:19,529           ********************************************************************************
2024-05-07T16:14:19,530           ############################
2024-05-07T16:14:19,530           # Package would be ignored #
2024-05-07T16:14:19,531           ############################
2024-05-07T16:14:19,531           Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1],
2024-05-07T16:14:19,532           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,533           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,533           package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added
2024-05-07T16:14:19,534           to the `packages` configuration field.

2024-05-07T16:14:19,535           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,536           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,536           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,538           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,539           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,540           If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are
2024-05-07T16:14:19,541           already explicitly excluding 'galaxy.tools.bundled.filters.gff' via
2024-05-07T16:14:19,541           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,542           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,542           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,543           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,545           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,546           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,547                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,547                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,548                 directory, all directories are treated like packages.
2024-05-07T16:14:19,549           ********************************************************************************

2024-05-07T16:14:19,550   !!
2024-05-07T16:14:19,550     check.warn(importable)
2024-05-07T16:14:19,551   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration.
2024-05-07T16:14:19,551   !!

2024-05-07T16:14:19,552           ********************************************************************************
2024-05-07T16:14:19,552           ############################
2024-05-07T16:14:19,553           # Package would be ignored #
2024-05-07T16:14:19,553           ############################
2024-05-07T16:14:19,554           Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1],
2024-05-07T16:14:19,554           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,556           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,556           package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added
2024-05-07T16:14:19,557           to the `packages` configuration field.

2024-05-07T16:14:19,558           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,558           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,558           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,560           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,561           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,562           If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are
2024-05-07T16:14:19,563           already explicitly excluding 'galaxy.tools.bundled.interactive' via
2024-05-07T16:14:19,563           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,564           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,565           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,566           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,567           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,568           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,569                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,570                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,570                 directory, all directories are treated like packages.
2024-05-07T16:14:19,571           ********************************************************************************

2024-05-07T16:14:19,572   !!
2024-05-07T16:14:19,573     check.warn(importable)
2024-05-07T16:14:19,573   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration.
2024-05-07T16:14:19,574   !!

2024-05-07T16:14:19,575           ********************************************************************************
2024-05-07T16:14:19,575           ############################
2024-05-07T16:14:19,576           # Package would be ignored #
2024-05-07T16:14:19,577           ############################
2024-05-07T16:14:19,577           Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1],
2024-05-07T16:14:19,578           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,579           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,580           package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added
2024-05-07T16:14:19,581           to the `packages` configuration field.

2024-05-07T16:14:19,582           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,583           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,583           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,584           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,585           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,586           If you don't want 'galaxy.tools.bundled.maf' to be distributed and are
2024-05-07T16:14:19,586           already explicitly excluding 'galaxy.tools.bundled.maf' via
2024-05-07T16:14:19,587           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,588           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,588           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,589           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,590           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,592           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,593                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,593                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,594                 directory, all directories are treated like packages.
2024-05-07T16:14:19,594           ********************************************************************************

2024-05-07T16:14:19,595   !!
2024-05-07T16:14:19,596     check.warn(importable)
2024-05-07T16:14:19,597   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration.
2024-05-07T16:14:19,597   !!

2024-05-07T16:14:19,598           ********************************************************************************
2024-05-07T16:14:19,599           ############################
2024-05-07T16:14:19,599           # Package would be ignored #
2024-05-07T16:14:19,600           ############################
2024-05-07T16:14:19,600           Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1],
2024-05-07T16:14:19,601           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,602           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,602           package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added
2024-05-07T16:14:19,603           to the `packages` configuration field.

2024-05-07T16:14:19,604           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,604           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,605           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,606           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,607           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,609           If you don't want 'galaxy.tools.bundled.meme' to be distributed and are
2024-05-07T16:14:19,609           already explicitly excluding 'galaxy.tools.bundled.meme' via
2024-05-07T16:14:19,610           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,610           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,611           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,612           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,613           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,615           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,616                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,616                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,617                 directory, all directories are treated like packages.
2024-05-07T16:14:19,617           ********************************************************************************

2024-05-07T16:14:19,618   !!
2024-05-07T16:14:19,618     check.warn(importable)
2024-05-07T16:14:19,619   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration.
2024-05-07T16:14:19,620   !!

2024-05-07T16:14:19,621           ********************************************************************************
2024-05-07T16:14:19,621           ############################
2024-05-07T16:14:19,622           # Package would be ignored #
2024-05-07T16:14:19,622           ############################
2024-05-07T16:14:19,623           Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1],
2024-05-07T16:14:19,623           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,624           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,625           package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added
2024-05-07T16:14:19,625           to the `packages` configuration field.

2024-05-07T16:14:19,626           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,627           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,627           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,629           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,630           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,631           If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are
2024-05-07T16:14:19,631           already explicitly excluding 'galaxy.tools.bundled.metag_tools' via
2024-05-07T16:14:19,632           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,633           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,633           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,634           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,635           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,637           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,638                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,638                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,639                 directory, all directories are treated like packages.
2024-05-07T16:14:19,639           ********************************************************************************

2024-05-07T16:14:19,640   !!
2024-05-07T16:14:19,641     check.warn(importable)
2024-05-07T16:14:19,642   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration.
2024-05-07T16:14:19,642   !!

2024-05-07T16:14:19,643           ********************************************************************************
2024-05-07T16:14:19,644           ############################
2024-05-07T16:14:19,645           # Package would be ignored #
2024-05-07T16:14:19,646           ############################
2024-05-07T16:14:19,646           Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1],
2024-05-07T16:14:19,647           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,648           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,649           package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added
2024-05-07T16:14:19,649           to the `packages` configuration field.

2024-05-07T16:14:19,650           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,651           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,652           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,653           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,653           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,654           If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are
2024-05-07T16:14:19,655           already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via
2024-05-07T16:14:19,655           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,656           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,657           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,657           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,658           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,660           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,661                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,661                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,662                 directory, all directories are treated like packages.
2024-05-07T16:14:19,662           ********************************************************************************

2024-05-07T16:14:19,663   !!
2024-05-07T16:14:19,663     check.warn(importable)
2024-05-07T16:14:19,664   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration.
2024-05-07T16:14:19,665   !!

2024-05-07T16:14:19,666           ********************************************************************************
2024-05-07T16:14:19,666           ############################
2024-05-07T16:14:19,667           # Package would be ignored #
2024-05-07T16:14:19,667           ############################
2024-05-07T16:14:19,668           Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1],
2024-05-07T16:14:19,668           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,669           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,670           package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added
2024-05-07T16:14:19,670           to the `packages` configuration field.

2024-05-07T16:14:19,672           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,672           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,673           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,674           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,675           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,676           If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are
2024-05-07T16:14:19,676           already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via
2024-05-07T16:14:19,677           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,678           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,678           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,679           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,680           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,682           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,682                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,683                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,683                 directory, all directories are treated like packages.
2024-05-07T16:14:19,684           ********************************************************************************

2024-05-07T16:14:19,685   !!
2024-05-07T16:14:19,686     check.warn(importable)
2024-05-07T16:14:19,686   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration.
2024-05-07T16:14:19,686   !!

2024-05-07T16:14:19,687           ********************************************************************************
2024-05-07T16:14:19,688           ############################
2024-05-07T16:14:19,688           # Package would be ignored #
2024-05-07T16:14:19,689           ############################
2024-05-07T16:14:19,689           Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1],
2024-05-07T16:14:19,690           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,691           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,691           package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added
2024-05-07T16:14:19,692           to the `packages` configuration field.

2024-05-07T16:14:19,693           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,693           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,694           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,695           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,696           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,697           If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are
2024-05-07T16:14:19,698           already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via
2024-05-07T16:14:19,698           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,699           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,699           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,700           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,701           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,703           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,704                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,705                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,705                 directory, all directories are treated like packages.
2024-05-07T16:14:19,706           ********************************************************************************

2024-05-07T16:14:19,707   !!
2024-05-07T16:14:19,708     check.warn(importable)
2024-05-07T16:14:19,708   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration.
2024-05-07T16:14:19,709   !!

2024-05-07T16:14:19,710           ********************************************************************************
2024-05-07T16:14:19,710           ############################
2024-05-07T16:14:19,710           # Package would be ignored #
2024-05-07T16:14:19,711           ############################
2024-05-07T16:14:19,711           Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1],
2024-05-07T16:14:19,712           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,713           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,713           package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added
2024-05-07T16:14:19,714           to the `packages` configuration field.

2024-05-07T16:14:19,715           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,715           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,716           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,717           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,718           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,718           If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are
2024-05-07T16:14:19,719           already explicitly excluding 'galaxy.tools.bundled.plotting' via
2024-05-07T16:14:19,719           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,720           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,720           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,721           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,722           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,724           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,725                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,725                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,726                 directory, all directories are treated like packages.
2024-05-07T16:14:19,727           ********************************************************************************

2024-05-07T16:14:19,728   !!
2024-05-07T16:14:19,729     check.warn(importable)
2024-05-07T16:14:19,730   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration.
2024-05-07T16:14:19,730   !!

2024-05-07T16:14:19,732           ********************************************************************************
2024-05-07T16:14:19,732           ############################
2024-05-07T16:14:19,733           # Package would be ignored #
2024-05-07T16:14:19,734           ############################
2024-05-07T16:14:19,734           Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1],
2024-05-07T16:14:19,735           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,737           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,737           package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added
2024-05-07T16:14:19,738           to the `packages` configuration field.

2024-05-07T16:14:19,740           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,747           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,747           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,749           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,750           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,751           If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are
2024-05-07T16:14:19,752           already explicitly excluding 'galaxy.tools.bundled.solid_tools' via
2024-05-07T16:14:19,753           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,753           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,754           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,755           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,756           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,758           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,759                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,760                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,761                 directory, all directories are treated like packages.
2024-05-07T16:14:19,761           ********************************************************************************

2024-05-07T16:14:19,763   !!
2024-05-07T16:14:19,764     check.warn(importable)
2024-05-07T16:14:19,764   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration.
2024-05-07T16:14:19,765   !!

2024-05-07T16:14:19,766           ********************************************************************************
2024-05-07T16:14:19,767           ############################
2024-05-07T16:14:19,768           # Package would be ignored #
2024-05-07T16:14:19,769           ############################
2024-05-07T16:14:19,769           Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1],
2024-05-07T16:14:19,770           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,772           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,772           package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added
2024-05-07T16:14:19,773           to the `packages` configuration field.

2024-05-07T16:14:19,775           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,776           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,776           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,778           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,779           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,781           If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are
2024-05-07T16:14:19,782           already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via
2024-05-07T16:14:19,782           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,783           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,784           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,785           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,787           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,789           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,790                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,790                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,791                 directory, all directories are treated like packages.
2024-05-07T16:14:19,791           ********************************************************************************

2024-05-07T16:14:19,793   !!
2024-05-07T16:14:19,793     check.warn(importable)
2024-05-07T16:14:19,794   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration.
2024-05-07T16:14:19,795   !!

2024-05-07T16:14:19,796           ********************************************************************************
2024-05-07T16:14:19,797           ############################
2024-05-07T16:14:19,797           # Package would be ignored #
2024-05-07T16:14:19,798           ############################
2024-05-07T16:14:19,798           Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1],
2024-05-07T16:14:19,799           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,801           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,801           package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added
2024-05-07T16:14:19,802           to the `packages` configuration field.

2024-05-07T16:14:19,803           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,804           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,813           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,814           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,816           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,817           If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are
2024-05-07T16:14:19,818           already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via
2024-05-07T16:14:19,819           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,819           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,820           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,822           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,823           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,825           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,826                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,827                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,827                 directory, all directories are treated like packages.
2024-05-07T16:14:19,828           ********************************************************************************

2024-05-07T16:14:19,829   !!
2024-05-07T16:14:19,829     check.warn(importable)
2024-05-07T16:14:19,830   /tmp/pip-build-env-i3qay6fp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration.
2024-05-07T16:14:19,830   !!

2024-05-07T16:14:19,831           ********************************************************************************
2024-05-07T16:14:19,832           ############################
2024-05-07T16:14:19,832           # Package would be ignored #
2024-05-07T16:14:19,833           ############################
2024-05-07T16:14:19,834           Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1],
2024-05-07T16:14:19,834           but it is absent from setuptools' `packages` configuration.

2024-05-07T16:14:19,835           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-07T16:14:19,835           package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added
2024-05-07T16:14:19,836           to the `packages` configuration field.

2024-05-07T16:14:19,837           Alternatively, you can also rely on setuptools' discovery methods
2024-05-07T16:14:19,837           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-07T16:14:19,838           instead of `find_packages(...)`/`find:`).

2024-05-07T16:14:19,839           You can read more about "package discovery" on setuptools documentation page:

2024-05-07T16:14:19,839           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-07T16:14:19,841           If you don't want 'galaxy.tools.bundled.stats' to be distributed and are
2024-05-07T16:14:19,841           already explicitly excluding 'galaxy.tools.bundled.stats' via
2024-05-07T16:14:19,841           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-07T16:14:19,842           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-07T16:14:19,842           combination with a more fine grained `package-data` configuration.

2024-05-07T16:14:19,844           You can read more about "package data files" on setuptools documentation page:

2024-05-07T16:14:19,845           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-07T16:14:19,847           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-07T16:14:19,847                 even if it does not contain any `.py` files.
2024-05-07T16:14:19,847                 On the other hand, currently there is no concept of package data
2024-05-07T16:14:19,848                 directory, all directories are treated like packages.
2024-05-07T16:14:19,848           ********************************************************************************

2024-05-07T16:14:19,849   !!
2024-05-07T16:14:19,850     check.warn(importable)
2024-05-07T16:14:19,851   copying tool_shed_client/py.typed -> build/lib/tool_shed_client
2024-05-07T16:14:19,851   copying galaxy/py.typed -> build/lib/galaxy
2024-05-07T16:14:19,852   copying galaxy_ext/py.typed -> build/lib/galaxy_ext
2024-05-07T16:14:19,852   copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,853   copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,853   copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,854   copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,854   copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,855   copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,855   copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,856   copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,856   copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,857   copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,857   copying galaxy/tools/harmonize_two_collections_list.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,858   copying galaxy/tools/keep_success_collection.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,859   copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,859   copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,860   copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,860   copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,861   copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,862   copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools
2024-05-07T16:14:19,862   creating build/lib/galaxy/tools/bundled
2024-05-07T16:14:19,863   copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled
2024-05-07T16:14:19,863   creating build/lib/galaxy/tools/bundled/data_export
2024-05-07T16:14:19,864   copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export
2024-05-07T16:14:19,864   copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export
2024-05-07T16:14:19,865   copying galaxy/tools/bundled/data_export/send.py -> build/lib/galaxy/tools/bundled/data_export
2024-05-07T16:14:19,865   copying galaxy/tools/bundled/data_export/send.xml -> build/lib/galaxy/tools/bundled/data_export
2024-05-07T16:14:19,865   creating build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,866   copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,867   copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,867   copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,868   copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,868   copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,869   copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,869   copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,870   copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,870   copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,871   copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,871   copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,872   copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,872   copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,873   copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,873   copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,874   copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,874   copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,875   copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,875   copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,876   copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,876   copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,877   copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,877   copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,878   copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,879   copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,879   copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,880   copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,880   copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,881   copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,881   copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,882   copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,882   copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,882   copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,883   copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,883   copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,884   copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,884   copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,885   copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source
2024-05-07T16:14:19,885   creating build/lib/galaxy/tools/bundled/expression_tools
2024-05-07T16:14:19,886   copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools
2024-05-07T16:14:19,887   copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools
2024-05-07T16:14:19,887   copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools
2024-05-07T16:14:19,888   creating build/lib/galaxy/tools/bundled/extract
2024-05-07T16:14:19,888   copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract
2024-05-07T16:14:19,888   copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract
2024-05-07T16:14:19,889   copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract
2024-05-07T16:14:19,890   copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract
2024-05-07T16:14:19,890   copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract
2024-05-07T16:14:19,891   creating build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,891   copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,892   copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,892   copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,893   copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,893   copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,894   copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,894   copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,895   copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,896   copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,896   copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,897   copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,897   copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,897   copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,898   copying galaxy/tools/bundled/filters/catWrapper.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,898   copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,899   copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,899   copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,900   copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,900   copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,901   copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,901   copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,902   copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,902   copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,903   copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,903   copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,904   copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,904   copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,905   copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,906   copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,906   copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,906   copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,907   copying galaxy/tools/bundled/filters/grep.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,908   copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,908   copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,909   copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,909   copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,910   copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,910   copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,911   copying galaxy/tools/bundled/filters/joinWrapper.py -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,911   copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters
2024-05-07T16:14:19,912   copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters
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2024-05-07T16:14:19,930   creating build/lib/galaxy/tools/bundled/filters/gff
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2024-05-07T16:14:20,095   creating build/lib/galaxy/tools/bundled/metag_tools
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2024-05-07T16:14:20,134   creating build/lib/galaxy/tools/bundled/ngs_simulation
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2024-05-07T16:14:20,142   creating build/lib/galaxy/tools/bundled/phenotype_association
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2024-05-07T16:14:20,165   copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,167   copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,169   copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,172   copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,174   copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,177   copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,179   copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,181   copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,183   copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,185   copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,188   copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,190   copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,192   copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,194   copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,197   copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,199   creating build/lib/galaxy/tools/bundled/plotting
2024-05-07T16:14:20,200   copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting
2024-05-07T16:14:20,203   copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting
2024-05-07T16:14:20,205   copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting
2024-05-07T16:14:20,207   creating build/lib/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:20,208   copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:20,210   copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:20,213   copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:20,215   copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:20,217   copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:20,219   copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:20,222   copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:20,224   copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:20,226   creating build/lib/galaxy/tools/bundled/sr_assembly
2024-05-07T16:14:20,227   copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly
2024-05-07T16:14:20,229   copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly
2024-05-07T16:14:20,232   copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly
2024-05-07T16:14:20,234   copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly
2024-05-07T16:14:20,237   copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly
2024-05-07T16:14:20,239   creating build/lib/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:20,240   copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:20,242   copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:20,244   copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:20,247   copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:20,250   copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:20,252   copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:20,255   copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:20,257   copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:20,259   creating build/lib/galaxy/tools/bundled/stats
2024-05-07T16:14:20,260   copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats
2024-05-07T16:14:20,262   copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats
2024-05-07T16:14:20,264   copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats
2024-05-07T16:14:20,266   copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats
2024-05-07T16:14:20,269   copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats
2024-05-07T16:14:20,271   copying galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/lib/galaxy/tools/bundled/stats
2024-05-07T16:14:20,273   copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats
2024-05-07T16:14:20,276   copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats
2024-05-07T16:14:20,278   copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats
2024-05-07T16:14:20,280   copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats
2024-05-07T16:14:20,282   copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats
2024-05-07T16:14:20,285   copying galaxy/managers/licenses.json -> build/lib/galaxy/managers
2024-05-07T16:14:20,289   copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers
2024-05-07T16:14:20,291   copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies
2024-05-07T16:14:20,293   copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies
2024-05-07T16:14:20,296   copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies
2024-05-07T16:14:20,297   copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies
2024-05-07T16:14:20,299   copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies
2024-05-07T16:14:20,302   copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies
2024-05-07T16:14:20,304   copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies
2024-05-07T16:14:20,306   copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies
2024-05-07T16:14:20,308   copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions
2024-05-07T16:14:20,310   copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp
2024-05-07T16:14:20,312   copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp
2024-05-07T16:14:20,314   copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp
2024-05-07T16:14:20,316   copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script
2024-05-07T16:14:20,318   copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script
2024-05-07T16:14:20,320   copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script
2024-05-07T16:14:20,322   copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources
2024-05-07T16:14:20,361   installing to build/bdist.linux-armv7l/wheel
2024-05-07T16:14:20,361   running install
2024-05-07T16:14:20,385   running install_lib
2024-05-07T16:14:20,391   creating build/bdist.linux-armv7l
2024-05-07T16:14:20,392   creating build/bdist.linux-armv7l/wheel
2024-05-07T16:14:20,393   creating build/bdist.linux-armv7l/wheel/tool_shed_client
2024-05-07T16:14:20,395   creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema
2024-05-07T16:14:20,396   copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema
2024-05-07T16:14:20,398   copying build/lib/tool_shed_client/schema/trs.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema
2024-05-07T16:14:20,401   copying build/lib/tool_shed_client/schema/trs_service_info.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema
2024-05-07T16:14:20,403   copying build/lib/tool_shed_client/trs_util.py -> build/bdist.linux-armv7l/wheel/tool_shed_client
2024-05-07T16:14:20,404   copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client
2024-05-07T16:14:20,406   copying build/lib/tool_shed_client/py.typed -> build/bdist.linux-armv7l/wheel/tool_shed_client
2024-05-07T16:14:20,408   creating build/bdist.linux-armv7l/wheel/galaxy
2024-05-07T16:14:20,409   creating build/bdist.linux-armv7l/wheel/galaxy/actions
2024-05-07T16:14:20,410   copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/actions
2024-05-07T16:14:20,412   copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/galaxy/actions
2024-05-07T16:14:20,414   copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-05-07T16:14:20,417   creating build/bdist.linux-armv7l/wheel/galaxy/webhooks
2024-05-07T16:14:20,418   copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/webhooks
2024-05-07T16:14:20,420   copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-05-07T16:14:20,423   creating build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,424   creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager
2024-05-07T16:14:20,425   copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager
2024-05-07T16:14:20,427   copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager
2024-05-07T16:14:20,429   copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,431   copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,434   copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,437   creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters
2024-05-07T16:14:20,438   copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/filters
2024-05-07T16:14:20,440   creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-05-07T16:14:20,441   copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-05-07T16:14:20,443   copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-05-07T16:14:20,445   copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-05-07T16:14:20,447   copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-05-07T16:14:20,450   copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-05-07T16:14:20,453   copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-05-07T16:14:20,455   copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-05-07T16:14:20,457   copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-05-07T16:14:20,460   copying build/lib/galaxy/tools/keep_success_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,462   creating build/bdist.linux-armv7l/wheel/galaxy/tools/search
2024-05-07T16:14:20,462   copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/search
2024-05-07T16:14:20,465   copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,467   creating build/bdist.linux-armv7l/wheel/galaxy/tools/util
2024-05-07T16:14:20,469   creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops
2024-05-07T16:14:20,470   copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops
2024-05-07T16:14:20,472   copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util
2024-05-07T16:14:20,474   copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util
2024-05-07T16:14:20,476   copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,480   creating build/bdist.linux-armv7l/wheel/galaxy/tools/data
2024-05-07T16:14:20,481   copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data
2024-05-07T16:14:20,483   copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,485   copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,487   copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,489   copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,491   copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,493   copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,495   copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,497   copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,499   copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,500   copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:20,503   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled
2024-05-07T16:14:20,505   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,506   copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,508   copying build/lib/galaxy/tools/bundled/filters/grep.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,510   copying build/lib/galaxy/tools/bundled/filters/joinWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,512   copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,513   copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,515   copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,517   copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,519   copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,521   copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,523   copying build/lib/galaxy/tools/bundled/filters/sorter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,524   copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,526   copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,528   copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,530   copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,532   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,535   copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,537   copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,539   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,542   copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,544   copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,547   copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,549   copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,552   copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,554   copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,557   copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,559   copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,561   copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,564   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,567   copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,571   copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,573   copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,576   copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,579   copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,581   copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,583   copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,586   copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,589   copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,592   copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,594   copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,596   copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,599   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,602   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,604   copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,606   copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,609   copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,611   copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,613   copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,616   copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,618   copying build/lib/galaxy/tools/bundled/filters/catWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,621   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,623   copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,625   copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,628   copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,630   copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,633   copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,634   copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,636   copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,638   copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,640   copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,642   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-05-07T16:14:20,643   copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-05-07T16:14:20,646   copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-05-07T16:14:20,647   copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-05-07T16:14:20,650   copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-05-07T16:14:20,651   copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-05-07T16:14:20,653   copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-05-07T16:14:20,655   copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-05-07T16:14:20,657   copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-05-07T16:14:20,659   copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-05-07T16:14:20,661   copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,662   copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,664   copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,666   copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,668   copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,670   copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,671   copying build/lib/galaxy/tools/bundled/filters/remove_beginning.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,673   copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,675   copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,677   copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,678   copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,680   copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,682   copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,684   copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,686   copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-05-07T16:14:20,688   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2024-05-07T16:14:20,689   copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2024-05-07T16:14:20,691   copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2024-05-07T16:14:20,694   copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2024-05-07T16:14:20,695   copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2024-05-07T16:14:20,698   copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2024-05-07T16:14:20,700   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,701   copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,703   copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,705   copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,707   copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,709   copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,711   copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,713   copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,715   copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,717   copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,718   copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,720   copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,722   copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,724   copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,726   copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,728   copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,730   copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,732   copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,734   copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,736   copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,737   copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,739   copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,742   copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,743   copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,745   copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,747   copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-05-07T16:14:20,750   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,751   copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,753   copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,754   copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,756   copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,758   copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,759   copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,761   copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,763   copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,765   copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,766   copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,768   copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,770   copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,772   copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,774   copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,775   copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,777   copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,779   copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,781   copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,783   copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,784   copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,786   copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,788   copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,790   copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,792   copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,794   copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,796   copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,798   copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,799   copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,801   copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,803   copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,805   copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,808   copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,810   copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,812   copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,814   copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,816   copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,818   copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,820   copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-05-07T16:14:20,822   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting
2024-05-07T16:14:20,823   copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting
2024-05-07T16:14:20,826   copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting
2024-05-07T16:14:20,828   copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting
2024-05-07T16:14:20,830   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-05-07T16:14:20,831   copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-05-07T16:14:20,835   copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-05-07T16:14:20,837   copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-05-07T16:14:20,838   copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-05-07T16:14:20,842   copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-05-07T16:14:20,844   copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-05-07T16:14:20,846   copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-05-07T16:14:20,849   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-05-07T16:14:20,850   copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-05-07T16:14:20,853   copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-05-07T16:14:20,855   copying build/lib/galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-05-07T16:14:20,858   copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-05-07T16:14:20,860   copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-05-07T16:14:20,862   copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-05-07T16:14:20,865   copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-05-07T16:14:20,866   copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-05-07T16:14:20,868   copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-05-07T16:14:20,870   copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-05-07T16:14:20,872   copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-05-07T16:14:20,875   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2024-05-07T16:14:20,876   copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2024-05-07T16:14:20,878   copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2024-05-07T16:14:20,881   copying build/lib/galaxy/tools/bundled/data_export/send.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2024-05-07T16:14:20,883   copying build/lib/galaxy/tools/bundled/data_export/send.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2024-05-07T16:14:20,885   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2024-05-07T16:14:20,886   copying build/lib/galaxy/tools/bundled/meme/fimo_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2024-05-07T16:14:20,888   copying build/lib/galaxy/tools/bundled/meme/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2024-05-07T16:14:20,890   copying build/lib/galaxy/tools/bundled/meme/fimo.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2024-05-07T16:14:20,892   copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2024-05-07T16:14:20,895   copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled
2024-05-07T16:14:20,897   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,898   copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,901   copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,903   copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,905   copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,907   copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,909   copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,911   copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,913   copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,915   copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,918   copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,919   copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,921   copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,924   copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,927   copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,931   copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,934   copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,937   copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,941   copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,943   copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,946   copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,949   copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,951   copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,953   copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,955   copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,959   copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,962   copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,964   copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,966   copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,969   copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,973   copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,975   copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,977   copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,979   copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,982   copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-05-07T16:14:20,985   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2024-05-07T16:14:20,985   copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2024-05-07T16:14:20,989   copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2024-05-07T16:14:20,990   copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2024-05-07T16:14:20,993   copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2024-05-07T16:14:20,994   copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2024-05-07T16:14:20,998   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-05-07T16:14:20,999   copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-05-07T16:14:21,001   copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-05-07T16:14:21,003   copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-05-07T16:14:21,005   copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-05-07T16:14:21,007   copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-05-07T16:14:21,009   copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-05-07T16:14:21,011   copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-05-07T16:14:21,013   copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-05-07T16:14:21,015   copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-05-07T16:14:21,018   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:21,019   copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:21,022   copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:21,025   copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:21,026   copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:21,029   copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:21,032   copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:21,034   copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:21,036   copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-05-07T16:14:21,039   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:21,040   copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:21,042   copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:21,044   copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:21,046   copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:21,047   copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:21,049   copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:21,051   copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:21,053   copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-05-07T16:14:21,057   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,057   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,059   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,062   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,064   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,066   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,068   copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,070   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,072   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,075   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,077   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,079   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,082   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,085   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,087   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,089   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,092   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,094   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,097   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,099   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,102   copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,105   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,107   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,110   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,113   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,115   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,118   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,121   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,123   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,125   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,128   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,130   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,132   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,134   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,136   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-05-07T16:14:21,139   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation
2024-05-07T16:14:21,140   copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation
2024-05-07T16:14:21,142   copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation
2024-05-07T16:14:21,145   copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation
2024-05-07T16:14:21,148   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools
2024-05-07T16:14:21,149   copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools
2024-05-07T16:14:21,151   copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools
2024-05-07T16:14:21,153   copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools
2024-05-07T16:14:21,156   copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,162   copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,165   copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,167   copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,170   copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,172   copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,175   creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports
2024-05-07T16:14:21,176   copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports
2024-05-07T16:14:21,179   creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-05-07T16:14:21,180   copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-05-07T16:14:21,183   copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-05-07T16:14:21,185   copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-05-07T16:14:21,187   copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-05-07T16:14:21,190   copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-05-07T16:14:21,192   copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-05-07T16:14:21,195   copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-05-07T16:14:21,197   copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-05-07T16:14:21,199   copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-05-07T16:14:21,202   copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,204   copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,207   copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,210   copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,212   creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,213   copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,216   copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,219   copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,222   copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,225   copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,227   copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,230   copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,233   copying build/lib/galaxy/tools/parameters/cancelable_request.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,235   copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,240   copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,243   copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,245   copying build/lib/galaxy/tools/parameters/history_query.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,248   copying build/lib/galaxy/tools/parameters/workflow_utils.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,250   copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-05-07T16:14:21,253   copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,256   creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2024-05-07T16:14:21,258   copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2024-05-07T16:14:21,260   copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2024-05-07T16:14:21,262   copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2024-05-07T16:14:21,264   copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2024-05-07T16:14:21,266   copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2024-05-07T16:14:21,268   copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,270   copying build/lib/galaxy/tools/harmonize_two_collections_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,273   copying build/lib/galaxy/tools/test.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,276   copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,279   creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-05-07T16:14:21,280   copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-05-07T16:14:21,282   copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-05-07T16:14:21,285   copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-05-07T16:14:21,287   copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-05-07T16:14:21,290   copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-05-07T16:14:21,292   copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-05-07T16:14:21,295   copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-05-07T16:14:21,297   copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-05-07T16:14:21,301   creating build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-05-07T16:14:21,302   copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-05-07T16:14:21,306   copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-05-07T16:14:21,310   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,311   copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,314   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers
2024-05-07T16:14:21,316   copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers
2024-05-07T16:14:21,318   copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers
2024-05-07T16:14:21,320   copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers
2024-05-07T16:14:21,322   copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,326   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-05-07T16:14:21,327   copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-05-07T16:14:21,330   copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-05-07T16:14:21,332   copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-05-07T16:14:21,334   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli
2024-05-07T16:14:21,336   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell
2024-05-07T16:14:21,338   copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell
2024-05-07T16:14:21,341   copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell
2024-05-07T16:14:21,344   copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell
2024-05-07T16:14:21,347   copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli
2024-05-07T16:14:21,350   copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli
2024-05-07T16:14:21,353   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:21,355   copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:21,358   copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:21,361   copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:21,364   copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:21,367   copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:21,370   copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-05-07T16:14:21,373   copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-05-07T16:14:21,376   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor
2024-05-07T16:14:21,378   copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor
2024-05-07T16:14:21,381   copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-05-07T16:14:21,384   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2024-05-07T16:14:21,386   copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2024-05-07T16:14:21,389   copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2024-05-07T16:14:21,392   copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2024-05-07T16:14:21,395   copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2024-05-07T16:14:21,398   copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-05-07T16:14:21,401   copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-05-07T16:14:21,405   copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-05-07T16:14:21,407   copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,411   copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,414   copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,417   copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,421   copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,425   copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,429   copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,433   copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,437   copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,439   copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,442   copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,444   copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,447   copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-05-07T16:14:21,450   copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-05-07T16:14:21,454   copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-05-07T16:14:21,457   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters
2024-05-07T16:14:21,458   copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters
2024-05-07T16:14:21,460   copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters
2024-05-07T16:14:21,462   copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters
2024-05-07T16:14:21,464   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules
2024-05-07T16:14:21,465   copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/rules
2024-05-07T16:14:21,466   copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-05-07T16:14:21,468   copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-05-07T16:14:21,470   copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-05-07T16:14:21,473   copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-05-07T16:14:21,476   creating build/bdist.linux-armv7l/wheel/galaxy/work
2024-05-07T16:14:21,477   copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/work
2024-05-07T16:14:21,478   copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/galaxy/work
2024-05-07T16:14:21,481   creating build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions
2024-05-07T16:14:21,482   copying build/lib/galaxy/carbon_emissions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions
2024-05-07T16:14:21,485   creating build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-05-07T16:14:21,486   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers
2024-05-07T16:14:21,487   copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers
2024-05-07T16:14:21,489   copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers
2024-05-07T16:14:21,491   copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-05-07T16:14:21,494   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor
2024-05-07T16:14:21,495   copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor
2024-05-07T16:14:21,497   copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor
2024-05-07T16:14:21,499   copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor
2024-05-07T16:14:21,502   copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-05-07T16:14:21,505   copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-05-07T16:14:21,507   copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-05-07T16:14:21,509   copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-05-07T16:14:21,511   copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-05-07T16:14:21,514   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources
2024-05-07T16:14:21,515   copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources
2024-05-07T16:14:21,517   copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources
2024-05-07T16:14:21,520   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports
2024-05-07T16:14:21,521   copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports
2024-05-07T16:14:21,523   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators
2024-05-07T16:14:21,524   copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators
2024-05-07T16:14:21,526   copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators
2024-05-07T16:14:21,528   copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-05-07T16:14:21,531   copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-05-07T16:14:21,535   copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-05-07T16:14:21,538   creating build/bdist.linux-armv7l/wheel/galaxy/authnz
2024-05-07T16:14:21,538   copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2024-05-07T16:14:21,541   copying build/lib/galaxy/authnz/custos_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2024-05-07T16:14:21,544   copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2024-05-07T16:14:21,546   copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2024-05-07T16:14:21,549   copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2024-05-07T16:14:21,551   copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-05-07T16:14:21,553   copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-05-07T16:14:21,555   copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-05-07T16:14:21,557   copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy
2024-05-07T16:14:21,559   creating build/bdist.linux-armv7l/wheel/galaxy/short_term_storage
2024-05-07T16:14:21,560   copying build/lib/galaxy/short_term_storage/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/short_term_storage
2024-05-07T16:14:21,564   creating build/bdist.linux-armv7l/wheel/galaxy/forms
2024-05-07T16:14:21,565   copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/forms
2024-05-07T16:14:21,566   copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/forms
2024-05-07T16:14:21,570   creating build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,571   copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,575   copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,577   copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,579   copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,582   copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,585   copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,588   copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,590   copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,593   copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,595   copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,598   copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,601   copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,603   copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,605   copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,608   copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,613   copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,615   copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,617   copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,619   copying build/lib/galaxy/managers/cloudauthzs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,621   copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,624   copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,626   copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,629   copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,631   copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,634   copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,636   copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,638   copying build/lib/galaxy/managers/cloud.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,641   copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,643   copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,645   copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,648   copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,650   copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,653   copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,655   copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,658   copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,660   copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,662   copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,664   copying build/lib/galaxy/managers/metrics.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,666   copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,668   copying build/lib/galaxy/managers/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,670   copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,673   copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,675   copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,678   copying build/lib/galaxy/managers/item_tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,680   copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,682   copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,684   copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,687   copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,689   copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,692   copying build/lib/galaxy/managers/dbkeys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,694   copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,696   copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,699   copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,701   copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,703   copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,705   copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,708   copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,710   copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,713   copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,716   copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-05-07T16:14:21,720   creating build/bdist.linux-armv7l/wheel/galaxy/visualization
2024-05-07T16:14:21,722   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/genome
2024-05-07T16:14:21,723   copying build/lib/galaxy/visualization/genome/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/genome
2024-05-07T16:14:21,726   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2024-05-07T16:14:21,727   copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2024-05-07T16:14:21,730   copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2024-05-07T16:14:21,734   copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2024-05-07T16:14:21,736   copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2024-05-07T16:14:21,738   copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2024-05-07T16:14:21,742   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2024-05-07T16:14:21,743   copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2024-05-07T16:14:21,745   copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2024-05-07T16:14:21,748   copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2024-05-07T16:14:21,751   copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2024-05-07T16:14:21,754   copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2024-05-07T16:14:21,761   copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization
2024-05-07T16:14:21,764   copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization
2024-05-07T16:14:21,767   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-05-07T16:14:21,768   copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-05-07T16:14:21,771   copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-05-07T16:14:21,773   copying build/lib/galaxy/visualization/plugins/utils.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-05-07T16:14:21,775   copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-05-07T16:14:21,777   copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-05-07T16:14:21,781   copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-05-07T16:14:21,785   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks
2024-05-07T16:14:21,786   copying build/lib/galaxy/visualization/tracks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks
2024-05-07T16:14:21,789   creating build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-05-07T16:14:21,791   copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-05-07T16:14:21,793   copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-05-07T16:14:21,795   copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-05-07T16:14:21,797   copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-05-07T16:14:21,800   copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-05-07T16:14:21,803   copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-05-07T16:14:21,805   copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-05-07T16:14:21,808   copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-05-07T16:14:21,810   copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-05-07T16:14:21,812   copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-05-07T16:14:21,816   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed
2024-05-07T16:14:21,817   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools
2024-05-07T16:14:21,819   copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools
2024-05-07T16:14:21,822   copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools
2024-05-07T16:14:21,824   copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools
2024-05-07T16:14:21,827   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-05-07T16:14:21,828   copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-05-07T16:14:21,830   copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-05-07T16:14:21,833   copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-05-07T16:14:21,835   copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-05-07T16:14:21,837   copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-05-07T16:14:21,840   copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-05-07T16:14:21,842   copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-05-07T16:14:21,844   copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-05-07T16:14:21,846   copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-05-07T16:14:21,848   copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-05-07T16:14:21,851   copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-05-07T16:14:21,853   copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed
2024-05-07T16:14:21,855   copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed
2024-05-07T16:14:21,857   copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed
2024-05-07T16:14:21,858   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils
2024-05-07T16:14:21,859   copying build/lib/galaxy/tool_shed/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils
2024-05-07T16:14:21,862   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2024-05-07T16:14:21,863   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools
2024-05-07T16:14:21,864   copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools
2024-05-07T16:14:21,866   copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools
2024-05-07T16:14:21,869   copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools
2024-05-07T16:14:21,871   copying build/lib/galaxy/tool_shed/galaxy_install/client.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2024-05-07T16:14:21,873   copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2024-05-07T16:14:21,875   copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2024-05-07T16:14:21,877   copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2024-05-07T16:14:21,880   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies
2024-05-07T16:14:21,881   copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies
2024-05-07T16:14:21,883   copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies
2024-05-07T16:14:21,886   copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2024-05-07T16:14:21,889   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata
2024-05-07T16:14:21,890   copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata
2024-05-07T16:14:21,893   copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata
2024-05-07T16:14:21,895   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata
2024-05-07T16:14:21,896   copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata
2024-05-07T16:14:21,897   copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata
2024-05-07T16:14:21,900   copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-05-07T16:14:21,903   creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2024-05-07T16:14:21,903   copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2024-05-07T16:14:21,906   copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2024-05-07T16:14:21,907   copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2024-05-07T16:14:21,910   copying build/lib/galaxy/app_unittest_utils/toolbox_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2024-05-07T16:14:21,913   creating build/bdist.linux-armv7l/wheel/galaxy/celery
2024-05-07T16:14:21,913   copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/celery
2024-05-07T16:14:21,916   copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/celery
2024-05-07T16:14:21,918   copying build/lib/galaxy/celery/base_task.py -> build/bdist.linux-armv7l/wheel/galaxy/celery
2024-05-07T16:14:21,920   copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/galaxy/celery
2024-05-07T16:14:21,922   copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-05-07T16:14:21,924   creating build/bdist.linux-armv7l/wheel/galaxy_ext
2024-05-07T16:14:21,926   creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor
2024-05-07T16:14:21,927   copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor
2024-05-07T16:14:21,928   copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor
2024-05-07T16:14:21,930   copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext
2024-05-07T16:14:21,931   copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/galaxy_ext
2024-05-07T16:14:21,933   creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions
2024-05-07T16:14:21,934   copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions
2024-05-07T16:14:21,936   copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions
2024-05-07T16:14:21,938   creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata
2024-05-07T16:14:21,939   copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata
2024-05-07T16:14:21,941   copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata
2024-05-07T16:14:21,942   running install_egg_info
2024-05-07T16:14:21,953   Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/galaxy_app-24.0.2-py3.11.egg-info
2024-05-07T16:14:21,966   running install_scripts
2024-05-07T16:14:21,998   creating build/bdist.linux-armv7l/wheel/galaxy_app-24.0.2.dist-info/WHEEL
2024-05-07T16:14:22,001   creating '/tmp/pip-wheel-uv8i4714/.tmp-pj1ciua6/galaxy_app-24.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-05-07T16:14:22,004   adding 'galaxy/__init__.py'
2024-05-07T16:14:22,009   adding 'galaxy/app.py'
2024-05-07T16:14:22,011   adding 'galaxy/config_watchers.py'
2024-05-07T16:14:22,012   adding 'galaxy/di.py'
2024-05-07T16:14:22,014   adding 'galaxy/main.py'
2024-05-07T16:14:22,016   adding 'galaxy/main_config.py'
2024-05-07T16:14:22,017   adding 'galaxy/py.typed'
2024-05-07T16:14:22,020   adding 'galaxy/queue_worker.py'
2024-05-07T16:14:22,021   adding 'galaxy/queues.py'
2024-05-07T16:14:22,023   adding 'galaxy/structured_app.py'
2024-05-07T16:14:22,024   adding 'galaxy/actions/__init__.py'
2024-05-07T16:14:22,027   adding 'galaxy/actions/library.py'
2024-05-07T16:14:22,029   adding 'galaxy/app_unittest_utils/__init__.py'
2024-05-07T16:14:22,031   adding 'galaxy/app_unittest_utils/galaxy_mock.py'
2024-05-07T16:14:22,032   adding 'galaxy/app_unittest_utils/toolbox_support.py'
2024-05-07T16:14:22,034   adding 'galaxy/app_unittest_utils/tools_support.py'
2024-05-07T16:14:22,036   adding 'galaxy/authnz/__init__.py'
2024-05-07T16:14:22,039   adding 'galaxy/authnz/custos_authnz.py'
2024-05-07T16:14:22,043   adding 'galaxy/authnz/managers.py'
2024-05-07T16:14:22,046   adding 'galaxy/authnz/psa_authnz.py'
2024-05-07T16:14:22,047   adding 'galaxy/authnz/util.py'
2024-05-07T16:14:22,049   adding 'galaxy/carbon_emissions/__init__.py'
2024-05-07T16:14:22,052   adding 'galaxy/celery/__init__.py'
2024-05-07T16:14:22,053   adding 'galaxy/celery/_serialization.py'
2024-05-07T16:14:22,054   adding 'galaxy/celery/base_task.py'
2024-05-07T16:14:22,057   adding 'galaxy/celery/tasks.py'
2024-05-07T16:14:22,059   adding 'galaxy/dependencies/__init__.py'
2024-05-07T16:14:22,060   adding 'galaxy/dependencies/conditional-requirements.txt'
2024-05-07T16:14:22,062   adding 'galaxy/dependencies/dev-requirements.txt'
2024-05-07T16:14:22,063   adding 'galaxy/dependencies/lint-requirements.txt'
2024-05-07T16:14:22,064   adding 'galaxy/dependencies/pinned-lint-requirements.txt'
2024-05-07T16:14:22,066   adding 'galaxy/dependencies/pinned-requirements.txt'
2024-05-07T16:14:22,068   adding 'galaxy/dependencies/pinned-typecheck-requirements.txt'
2024-05-07T16:14:22,069   adding 'galaxy/dependencies/update.sh'
2024-05-07T16:14:22,070   adding 'galaxy/dependencies/update_lint_requirements.sh'
2024-05-07T16:14:22,072   adding 'galaxy/forms/__init__.py'
2024-05-07T16:14:22,074   adding 'galaxy/forms/forms.py'
2024-05-07T16:14:22,089   adding 'galaxy/jobs/__init__.py'
2024-05-07T16:14:22,092   adding 'galaxy/jobs/command_factory.py'
2024-05-07T16:14:22,100   adding 'galaxy/jobs/dynamic_tool_destination.py'
2024-05-07T16:14:22,107   adding 'galaxy/jobs/handler.py'
2024-05-07T16:14:22,109   adding 'galaxy/jobs/manager.py'
2024-05-07T16:14:22,111   adding 'galaxy/jobs/mapper.py'
2024-05-07T16:14:22,113   adding 'galaxy/jobs/rule_helper.py'
2024-05-07T16:14:22,114   adding 'galaxy/jobs/stock_rules.py'
2024-05-07T16:14:22,116   adding 'galaxy/jobs/rules/__init__.py'
2024-05-07T16:14:22,121   adding 'galaxy/jobs/runners/__init__.py'
2024-05-07T16:14:22,124   adding 'galaxy/jobs/runners/aws.py'
2024-05-07T16:14:22,126   adding 'galaxy/jobs/runners/chronos.py'
2024-05-07T16:14:22,128   adding 'galaxy/jobs/runners/cli.py'
2024-05-07T16:14:22,130   adding 'galaxy/jobs/runners/condor.py'
2024-05-07T16:14:22,133   adding 'galaxy/jobs/runners/drmaa.py'
2024-05-07T16:14:22,136   adding 'galaxy/jobs/runners/godocker.py'
2024-05-07T16:14:22,142   adding 'galaxy/jobs/runners/kubernetes.py'
2024-05-07T16:14:22,144   adding 'galaxy/jobs/runners/local.py'
2024-05-07T16:14:22,147   adding 'galaxy/jobs/runners/pbs.py'
2024-05-07T16:14:22,154   adding 'galaxy/jobs/runners/pulsar.py'
2024-05-07T16:14:22,156   adding 'galaxy/jobs/runners/slurm.py'
2024-05-07T16:14:22,157   adding 'galaxy/jobs/runners/state_handler_factory.py'
2024-05-07T16:14:22,159   adding 'galaxy/jobs/runners/tasks.py'
2024-05-07T16:14:22,163   adding 'galaxy/jobs/runners/univa.py'
2024-05-07T16:14:22,165   adding 'galaxy/jobs/runners/state_handlers/__init__.py'
2024-05-07T16:14:22,166   adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py'
2024-05-07T16:14:22,168   adding 'galaxy/jobs/runners/state_handlers/resubmit.py'
2024-05-07T16:14:22,170   adding 'galaxy/jobs/runners/util/__init__.py'
2024-05-07T16:14:22,171   adding 'galaxy/jobs/runners/util/env.py'
2024-05-07T16:14:22,173   adding 'galaxy/jobs/runners/util/external.py'
2024-05-07T16:14:22,174   adding 'galaxy/jobs/runners/util/fork_safe_write.py'
2024-05-07T16:14:22,176   adding 'galaxy/jobs/runners/util/kill.py'
2024-05-07T16:14:22,177   adding 'galaxy/jobs/runners/util/process_groups.py'
2024-05-07T16:14:22,179   adding 'galaxy/jobs/runners/util/pykube_util.py'
2024-05-07T16:14:22,180   adding 'galaxy/jobs/runners/util/sudo.py'
2024-05-07T16:14:22,182   adding 'galaxy/jobs/runners/util/cli/__init__.py'
2024-05-07T16:14:22,184   adding 'galaxy/jobs/runners/util/cli/factory.py'
2024-05-07T16:14:22,186   adding 'galaxy/jobs/runners/util/cli/job/__init__.py'
2024-05-07T16:14:22,187   adding 'galaxy/jobs/runners/util/cli/job/lsf.py'
2024-05-07T16:14:22,188   adding 'galaxy/jobs/runners/util/cli/job/pbs.py'
2024-05-07T16:14:22,189   adding 'galaxy/jobs/runners/util/cli/job/slurm.py'
2024-05-07T16:14:22,190   adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py'
2024-05-07T16:14:22,192   adding 'galaxy/jobs/runners/util/cli/job/torque.py'
2024-05-07T16:14:22,193   adding 'galaxy/jobs/runners/util/cli/shell/__init__.py'
2024-05-07T16:14:22,195   adding 'galaxy/jobs/runners/util/cli/shell/local.py'
2024-05-07T16:14:22,196   adding 'galaxy/jobs/runners/util/cli/shell/rsh.py'
2024-05-07T16:14:22,198   adding 'galaxy/jobs/runners/util/condor/__init__.py'
2024-05-07T16:14:22,200   adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh'
2024-05-07T16:14:22,201   adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh'
2024-05-07T16:14:22,202   adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh'
2024-05-07T16:14:22,204   adding 'galaxy/jobs/runners/util/job_script/__init__.py'
2024-05-07T16:14:22,205   adding 'galaxy/jobs/splitters/__init__.py'
2024-05-07T16:14:22,206   adding 'galaxy/jobs/splitters/basic.py'
2024-05-07T16:14:22,208   adding 'galaxy/jobs/splitters/multi.py'
2024-05-07T16:14:22,211   adding 'galaxy/managers/__init__.py'
2024-05-07T16:14:22,212   adding 'galaxy/managers/annotatable.py'
2024-05-07T16:14:22,214   adding 'galaxy/managers/api_keys.py'
2024-05-07T16:14:22,221   adding 'galaxy/managers/base.py'
2024-05-07T16:14:22,223   adding 'galaxy/managers/citations.py'
2024-05-07T16:14:22,225   adding 'galaxy/managers/cloud.py'
2024-05-07T16:14:22,226   adding 'galaxy/managers/cloudauthzs.py'
2024-05-07T16:14:22,231   adding 'galaxy/managers/collections.py'
2024-05-07T16:14:22,233   adding 'galaxy/managers/collections_util.py'
2024-05-07T16:14:22,235   adding 'galaxy/managers/configuration.py'
2024-05-07T16:14:22,236   adding 'galaxy/managers/context.py'
2024-05-07T16:14:22,241   adding 'galaxy/managers/datasets.py'
2024-05-07T16:14:22,243   adding 'galaxy/managers/datatypes.py'
2024-05-07T16:14:22,244   adding 'galaxy/managers/dbkeys.py'
2024-05-07T16:14:22,246   adding 'galaxy/managers/deletable.py'
2024-05-07T16:14:22,247   adding 'galaxy/managers/display_applications.py'
2024-05-07T16:14:22,248   adding 'galaxy/managers/executables.py'
2024-05-07T16:14:22,250   adding 'galaxy/managers/export_tracker.py'
2024-05-07T16:14:22,252   adding 'galaxy/managers/folders.py'
2024-05-07T16:14:22,254   adding 'galaxy/managers/forms.py'
2024-05-07T16:14:22,255   adding 'galaxy/managers/genomes.py'
2024-05-07T16:14:22,256   adding 'galaxy/managers/group_roles.py'
2024-05-07T16:14:22,258   adding 'galaxy/managers/group_users.py'
2024-05-07T16:14:22,259   adding 'galaxy/managers/groups.py'
2024-05-07T16:14:22,262   adding 'galaxy/managers/hdas.py'
2024-05-07T16:14:22,264   adding 'galaxy/managers/hdcas.py'
2024-05-07T16:14:22,269   adding 'galaxy/managers/histories.py'
2024-05-07T16:14:22,273   adding 'galaxy/managers/history_contents.py'
2024-05-07T16:14:22,275   adding 'galaxy/managers/interactivetool.py'
2024-05-07T16:14:22,276   adding 'galaxy/managers/item_tags.py'
2024-05-07T16:14:22,278   adding 'galaxy/managers/job_connections.py'
2024-05-07T16:14:22,283   adding 'galaxy/managers/jobs.py'
2024-05-07T16:14:22,284   adding 'galaxy/managers/lddas.py'
2024-05-07T16:14:22,286   adding 'galaxy/managers/libraries.py'
2024-05-07T16:14:22,288   adding 'galaxy/managers/library_datasets.py'
2024-05-07T16:14:22,299   adding 'galaxy/managers/licenses.json'
2024-05-07T16:14:22,302   adding 'galaxy/managers/licenses.py'
2024-05-07T16:14:22,303   adding 'galaxy/managers/markdown_export_base.css'
2024-05-07T16:14:22,305   adding 'galaxy/managers/markdown_parse.py'
2024-05-07T16:14:22,309   adding 'galaxy/managers/markdown_util.py'
2024-05-07T16:14:22,311   adding 'galaxy/managers/metrics.py'
2024-05-07T16:14:22,312   adding 'galaxy/managers/model_stores.py'
2024-05-07T16:14:22,315   adding 'galaxy/managers/notification.py'
2024-05-07T16:14:22,318   adding 'galaxy/managers/pages.py'
2024-05-07T16:14:22,319   adding 'galaxy/managers/quotas.py'
2024-05-07T16:14:22,321   adding 'galaxy/managers/ratable.py'
2024-05-07T16:14:22,322   adding 'galaxy/managers/rbac_secured.py'
2024-05-07T16:14:22,324   adding 'galaxy/managers/remote_files.py'
2024-05-07T16:14:22,325   adding 'galaxy/managers/roles.py'
2024-05-07T16:14:22,327   adding 'galaxy/managers/secured.py'
2024-05-07T16:14:22,328   adding 'galaxy/managers/session.py'
2024-05-07T16:14:22,331   adding 'galaxy/managers/sharable.py'
2024-05-07T16:14:22,332   adding 'galaxy/managers/taggable.py'
2024-05-07T16:14:22,333   adding 'galaxy/managers/tags.py'
2024-05-07T16:14:22,335   adding 'galaxy/managers/tasks.py'
2024-05-07T16:14:22,336   adding 'galaxy/managers/tool_data.py'
2024-05-07T16:14:22,338   adding 'galaxy/managers/tools.py'
2024-05-07T16:14:22,342   adding 'galaxy/managers/users.py'
2024-05-07T16:14:22,344   adding 'galaxy/managers/visualizations.py'
2024-05-07T16:14:22,355   adding 'galaxy/managers/workflows.py'
2024-05-07T16:14:22,359   adding 'galaxy/short_term_storage/__init__.py'
2024-05-07T16:14:22,360   adding 'galaxy/tool_shed/__init__.py'
2024-05-07T16:14:22,361   adding 'galaxy/tool_shed/cache.py'
2024-05-07T16:14:22,363   adding 'galaxy/tool_shed/repository_type.py'
2024-05-07T16:14:22,364   adding 'galaxy/tool_shed/galaxy_install/__init__.py'
2024-05-07T16:14:22,366   adding 'galaxy/tool_shed/galaxy_install/client.py'
2024-05-07T16:14:22,370   adding 'galaxy/tool_shed/galaxy_install/install_manager.py'
2024-05-07T16:14:22,376   adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py'
2024-05-07T16:14:22,377   adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py'
2024-05-07T16:14:22,379   adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py'
2024-05-07T16:14:22,381   adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py'
2024-05-07T16:14:22,383   adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py'
2024-05-07T16:14:22,386   adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py'
2024-05-07T16:14:22,388   adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py'
2024-05-07T16:14:22,390   adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py'
2024-05-07T16:14:22,393   adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py'
2024-05-07T16:14:22,395   adding 'galaxy/tool_shed/metadata/__init__.py'
2024-05-07T16:14:22,401   adding 'galaxy/tool_shed/metadata/metadata_generator.py'
2024-05-07T16:14:22,403   adding 'galaxy/tool_shed/tools/__init__.py'
2024-05-07T16:14:22,405   adding 'galaxy/tool_shed/tools/data_table_manager.py'
2024-05-07T16:14:22,406   adding 'galaxy/tool_shed/tools/tool_validator.py'
2024-05-07T16:14:22,409   adding 'galaxy/tool_shed/unittest_utils/__init__.py'
2024-05-07T16:14:22,410   adding 'galaxy/tool_shed/util/__init__.py'
2024-05-07T16:14:22,412   adding 'galaxy/tool_shed/util/basic_util.py'
2024-05-07T16:14:22,413   adding 'galaxy/tool_shed/util/container_util.py'
2024-05-07T16:14:22,416   adding 'galaxy/tool_shed/util/dependency_display.py'
2024-05-07T16:14:22,418   adding 'galaxy/tool_shed/util/hg_util.py'
2024-05-07T16:14:22,419   adding 'galaxy/tool_shed/util/metadata_util.py'
2024-05-07T16:14:22,423   adding 'galaxy/tool_shed/util/repository_util.py'
2024-05-07T16:14:22,425   adding 'galaxy/tool_shed/util/shed_util_common.py'
2024-05-07T16:14:22,428   adding 'galaxy/tool_shed/util/tool_dependency_util.py'
2024-05-07T16:14:22,430   adding 'galaxy/tool_shed/util/tool_util.py'
2024-05-07T16:14:22,434   adding 'galaxy/tool_shed/util/utility_container_manager.py'
2024-05-07T16:14:22,456   adding 'galaxy/tools/__init__.py'
2024-05-07T16:14:22,458   adding 'galaxy/tools/apply_rules.xml'
2024-05-07T16:14:22,460   adding 'galaxy/tools/biotools.py'
2024-05-07T16:14:22,461   adding 'galaxy/tools/build_list.xml'
2024-05-07T16:14:22,462   adding 'galaxy/tools/build_list_1.2.0.xml'
2024-05-07T16:14:22,464   adding 'galaxy/tools/cache.py'
2024-05-07T16:14:22,467   adding 'galaxy/tools/data_fetch.py'
2024-05-07T16:14:22,468   adding 'galaxy/tools/data_fetch.xml'
2024-05-07T16:14:22,469   adding 'galaxy/tools/duplicate_file_to_collection.xml'
2024-05-07T16:14:22,471   adding 'galaxy/tools/errors.py'
2024-05-07T16:14:22,475   adding 'galaxy/tools/evaluation.py'
2024-05-07T16:14:22,477   adding 'galaxy/tools/exception_handling.py'
2024-05-07T16:14:22,480   adding 'galaxy/tools/execute.py'
2024-05-07T16:14:22,481   adding 'galaxy/tools/extract_dataset.xml'
2024-05-07T16:14:22,483   adding 'galaxy/tools/filter_empty_collection.xml'
2024-05-07T16:14:22,484   adding 'galaxy/tools/filter_failed_collection.xml'
2024-05-07T16:14:22,485   adding 'galaxy/tools/filter_from_file.xml'
2024-05-07T16:14:22,487   adding 'galaxy/tools/flatten_collection.xml'
2024-05-07T16:14:22,488   adding 'galaxy/tools/harmonize_two_collections_list.xml'
2024-05-07T16:14:22,489   adding 'galaxy/tools/keep_success_collection.xml'
2024-05-07T16:14:22,491   adding 'galaxy/tools/merge_collection.xml'
2024-05-07T16:14:22,494   adding 'galaxy/tools/recommendations.py'
2024-05-07T16:14:22,495   adding 'galaxy/tools/relabel_from_file.xml'
2024-05-07T16:14:22,497   adding 'galaxy/tools/remote_tool_eval.py'
2024-05-07T16:14:22,498   adding 'galaxy/tools/repositories.py'
2024-05-07T16:14:22,500   adding 'galaxy/tools/sort_collection_list.xml'
2024-05-07T16:14:22,501   adding 'galaxy/tools/special_tools.py'
2024-05-07T16:14:22,503   adding 'galaxy/tools/tag_collection_from_file.xml'
2024-05-07T16:14:22,505   adding 'galaxy/tools/test.py'
2024-05-07T16:14:22,506   adding 'galaxy/tools/unzip_collection.xml'
2024-05-07T16:14:22,511   adding 'galaxy/tools/wrappers.py'
2024-05-07T16:14:22,512   adding 'galaxy/tools/zip_collection.xml'
2024-05-07T16:14:22,520   adding 'galaxy/tools/actions/__init__.py'
2024-05-07T16:14:22,522   adding 'galaxy/tools/actions/data_manager.py'
2024-05-07T16:14:22,523   adding 'galaxy/tools/actions/data_source.py'
2024-05-07T16:14:22,525   adding 'galaxy/tools/actions/history_imp_exp.py'
2024-05-07T16:14:22,526   adding 'galaxy/tools/actions/metadata.py'
2024-05-07T16:14:22,528   adding 'galaxy/tools/actions/model_operations.py'
2024-05-07T16:14:22,529   adding 'galaxy/tools/actions/upload.py'
2024-05-07T16:14:22,532   adding 'galaxy/tools/actions/upload_common.py'
2024-05-07T16:14:22,537   adding 'galaxy/tools/bundled/__init__.py'
2024-05-07T16:14:22,539   adding 'galaxy/tools/bundled/data_export/export_remote.py'
2024-05-07T16:14:22,540   adding 'galaxy/tools/bundled/data_export/export_remote.xml'
2024-05-07T16:14:22,542   adding 'galaxy/tools/bundled/data_export/send.py'
2024-05-07T16:14:22,543   adding 'galaxy/tools/bundled/data_export/send.xml'
2024-05-07T16:14:22,545   adding 'galaxy/tools/bundled/data_source/__init__.py'
2024-05-07T16:14:22,547   adding 'galaxy/tools/bundled/data_source/access_libraries.xml'
2024-05-07T16:14:22,548   adding 'galaxy/tools/bundled/data_source/biomart.xml'
2024-05-07T16:14:22,549   adding 'galaxy/tools/bundled/data_source/biomart_test.xml'
2024-05-07T16:14:22,551   adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml'
2024-05-07T16:14:22,552   adding 'galaxy/tools/bundled/data_source/data_source.py'
2024-05-07T16:14:22,553   adding 'galaxy/tools/bundled/data_source/ebi_sra.xml'
2024-05-07T16:14:22,555   adding 'galaxy/tools/bundled/data_source/eupathdb.xml'
2024-05-07T16:14:22,556   adding 'galaxy/tools/bundled/data_source/fly_modencode.xml'
2024-05-07T16:14:22,557   adding 'galaxy/tools/bundled/data_source/flymine.xml'
2024-05-07T16:14:22,559   adding 'galaxy/tools/bundled/data_source/flymine_test.xml'
2024-05-07T16:14:22,560   adding 'galaxy/tools/bundled/data_source/genbank.py'
2024-05-07T16:14:22,561   adding 'galaxy/tools/bundled/data_source/genbank.xml'
2024-05-07T16:14:22,562   adding 'galaxy/tools/bundled/data_source/gramene_mart.xml'
2024-05-07T16:14:22,563   adding 'galaxy/tools/bundled/data_source/hapmapmart.xml'
2024-05-07T16:14:22,565   adding 'galaxy/tools/bundled/data_source/hbvar.xml'
2024-05-07T16:14:22,566   adding 'galaxy/tools/bundled/data_source/import.py'
2024-05-07T16:14:22,567   adding 'galaxy/tools/bundled/data_source/import.xml'
2024-05-07T16:14:22,568   adding 'galaxy/tools/bundled/data_source/intermine.xml'
2024-05-07T16:14:22,569   adding 'galaxy/tools/bundled/data_source/metabolicmine.xml'
2024-05-07T16:14:22,570   adding 'galaxy/tools/bundled/data_source/microbial_import.py'
2024-05-07T16:14:22,572   adding 'galaxy/tools/bundled/data_source/microbial_import.xml'
2024-05-07T16:14:22,574   adding 'galaxy/tools/bundled/data_source/microbial_import_code.py'
2024-05-07T16:14:22,575   adding 'galaxy/tools/bundled/data_source/modmine.xml'
2024-05-07T16:14:22,576   adding 'galaxy/tools/bundled/data_source/mousemine.xml'
2024-05-07T16:14:22,577   adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml'
2024-05-07T16:14:22,579   adding 'galaxy/tools/bundled/data_source/ratmine.xml'
2024-05-07T16:14:22,580   adding 'galaxy/tools/bundled/data_source/sra.xml'
2024-05-07T16:14:22,581   adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml'
2024-05-07T16:14:22,583   adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml'
2024-05-07T16:14:22,584   adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml'
2024-05-07T16:14:22,586   adding 'galaxy/tools/bundled/data_source/upload.py'
2024-05-07T16:14:22,588   adding 'galaxy/tools/bundled/data_source/upload.xml'
2024-05-07T16:14:22,590   adding 'galaxy/tools/bundled/data_source/worm_modencode.xml'
2024-05-07T16:14:22,591   adding 'galaxy/tools/bundled/data_source/wormbase.xml'
2024-05-07T16:14:22,592   adding 'galaxy/tools/bundled/data_source/wormbase_test.xml'
2024-05-07T16:14:22,594   adding 'galaxy/tools/bundled/data_source/yeastmine.xml'
2024-05-07T16:14:22,595   adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml'
2024-05-07T16:14:22,596   adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml'
2024-05-07T16:14:22,598   adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml'
2024-05-07T16:14:22,599   adding 'galaxy/tools/bundled/expression_tools/pick_value.xml'
2024-05-07T16:14:22,601   adding 'galaxy/tools/bundled/extract/__init__.py'
2024-05-07T16:14:22,603   adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py'
2024-05-07T16:14:22,605   adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml'
2024-05-07T16:14:22,606   adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py'
2024-05-07T16:14:22,607   adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml'
2024-05-07T16:14:22,611   adding 'galaxy/tools/bundled/filters/CreateInterval.pl'
2024-05-07T16:14:22,612   adding 'galaxy/tools/bundled/filters/CreateInterval.xml'
2024-05-07T16:14:22,613   adding 'galaxy/tools/bundled/filters/__init__.py'
2024-05-07T16:14:22,614   adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py'
2024-05-07T16:14:22,616   adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml'
2024-05-07T16:14:22,617   adding 'galaxy/tools/bundled/filters/axt_to_fasta.py'
2024-05-07T16:14:22,618   adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml'
2024-05-07T16:14:22,620   adding 'galaxy/tools/bundled/filters/axt_to_lav.py'
2024-05-07T16:14:22,621   adding 'galaxy/tools/bundled/filters/axt_to_lav.xml'
2024-05-07T16:14:22,623   adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py'
2024-05-07T16:14:22,624   adding 'galaxy/tools/bundled/filters/bed2gff.xml'
2024-05-07T16:14:22,625   adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml'
2024-05-07T16:14:22,627   adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py'
2024-05-07T16:14:22,628   adding 'galaxy/tools/bundled/filters/catWrapper.py'
2024-05-07T16:14:22,629   adding 'galaxy/tools/bundled/filters/catWrapper.xml'
2024-05-07T16:14:22,631   adding 'galaxy/tools/bundled/filters/changeCase.pl'
2024-05-07T16:14:22,632   adding 'galaxy/tools/bundled/filters/changeCase.xml'
2024-05-07T16:14:22,633   adding 'galaxy/tools/bundled/filters/commWrapper.pl'
2024-05-07T16:14:22,634   adding 'galaxy/tools/bundled/filters/commWrapper.xml'
2024-05-07T16:14:22,635   adding 'galaxy/tools/bundled/filters/compare.xml'
2024-05-07T16:14:22,636   adding 'galaxy/tools/bundled/filters/condense_characters.pl'
2024-05-07T16:14:22,637   adding 'galaxy/tools/bundled/filters/condense_characters.xml'
2024-05-07T16:14:22,638   adding 'galaxy/tools/bundled/filters/convert_characters.py'
2024-05-07T16:14:22,640   adding 'galaxy/tools/bundled/filters/convert_characters.xml'
2024-05-07T16:14:22,641   adding 'galaxy/tools/bundled/filters/cutWrapper.pl'
2024-05-07T16:14:22,642   adding 'galaxy/tools/bundled/filters/cutWrapper.xml'
2024-05-07T16:14:22,644   adding 'galaxy/tools/bundled/filters/fileGrep.xml'
2024-05-07T16:14:22,645   adding 'galaxy/tools/bundled/filters/fixedValueColumn.pl'
2024-05-07T16:14:22,646   adding 'galaxy/tools/bundled/filters/fixedValueColumn.xml'
2024-05-07T16:14:22,648   adding 'galaxy/tools/bundled/filters/gff2bed.xml'
2024-05-07T16:14:22,649   adding 'galaxy/tools/bundled/filters/gff_to_bed_converter.py'
2024-05-07T16:14:22,650   adding 'galaxy/tools/bundled/filters/grep.py'
2024-05-07T16:14:22,652   adding 'galaxy/tools/bundled/filters/grep.xml'
2024-05-07T16:14:22,653   adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml'
2024-05-07T16:14:22,655   adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml'
2024-05-07T16:14:22,656   adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py'
2024-05-07T16:14:22,657   adding 'galaxy/tools/bundled/filters/headWrapper.xml'
2024-05-07T16:14:22,659   adding 'galaxy/tools/bundled/filters/join.py'
2024-05-07T16:14:22,661   adding 'galaxy/tools/bundled/filters/joinWrapper.py'
2024-05-07T16:14:22,662   adding 'galaxy/tools/bundled/filters/joiner.xml'
2024-05-07T16:14:22,664   adding 'galaxy/tools/bundled/filters/joiner2.xml'
2024-05-07T16:14:22,665   adding 'galaxy/tools/bundled/filters/lav_to_bed.py'
2024-05-07T16:14:22,666   adding 'galaxy/tools/bundled/filters/lav_to_bed.xml'
2024-05-07T16:14:22,667   adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py'
2024-05-07T16:14:22,669   adding 'galaxy/tools/bundled/filters/mergeCols.py'
2024-05-07T16:14:22,670   adding 'galaxy/tools/bundled/filters/mergeCols.xml'
2024-05-07T16:14:22,671   adding 'galaxy/tools/bundled/filters/pasteWrapper.pl'
2024-05-07T16:14:22,673   adding 'galaxy/tools/bundled/filters/pasteWrapper.xml'
2024-05-07T16:14:22,674   adding 'galaxy/tools/bundled/filters/random_lines_two_pass.py'
2024-05-07T16:14:22,675   adding 'galaxy/tools/bundled/filters/randomlines.py'
2024-05-07T16:14:22,677   adding 'galaxy/tools/bundled/filters/randomlines.xml'
2024-05-07T16:14:22,678   adding 'galaxy/tools/bundled/filters/remove_beginning.pl'
2024-05-07T16:14:22,679   adding 'galaxy/tools/bundled/filters/remove_beginning.xml'
2024-05-07T16:14:22,681   adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.py'
2024-05-07T16:14:22,682   adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.xml'
2024-05-07T16:14:22,688   adding 'galaxy/tools/bundled/filters/sff_extract.py'
2024-05-07T16:14:22,689   adding 'galaxy/tools/bundled/filters/sff_extractor.xml'
2024-05-07T16:14:22,691   adding 'galaxy/tools/bundled/filters/sorter.py'
2024-05-07T16:14:22,693   adding 'galaxy/tools/bundled/filters/sorter.xml'
2024-05-07T16:14:22,694   adding 'galaxy/tools/bundled/filters/tailWrapper.xml'
2024-05-07T16:14:22,696   adding 'galaxy/tools/bundled/filters/trimmer.py'
2024-05-07T16:14:22,697   adding 'galaxy/tools/bundled/filters/trimmer.xml'
2024-05-07T16:14:22,699   adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py'
2024-05-07T16:14:22,700   adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml'
2024-05-07T16:14:22,702   adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py'
2024-05-07T16:14:22,703   adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml'
2024-05-07T16:14:22,704   adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py'
2024-05-07T16:14:22,706   adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml'
2024-05-07T16:14:22,707   adding 'galaxy/tools/bundled/filters/uniq.py'
2024-05-07T16:14:22,708   adding 'galaxy/tools/bundled/filters/uniq.xml'
2024-05-07T16:14:22,710   adding 'galaxy/tools/bundled/filters/wc_gnu.xml'
2024-05-07T16:14:22,711   adding 'galaxy/tools/bundled/filters/wig_to_bigwig.xml'
2024-05-07T16:14:22,712   adding 'galaxy/tools/bundled/filters/wiggle_to_simple.py'
2024-05-07T16:14:22,714   adding 'galaxy/tools/bundled/filters/wiggle_to_simple.xml'
2024-05-07T16:14:22,716   adding 'galaxy/tools/bundled/filters/gff/__init__.py'
2024-05-07T16:14:22,717   adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.py'
2024-05-07T16:14:22,718   adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml'
2024-05-07T16:14:22,720   adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py'
2024-05-07T16:14:22,722   adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml'
2024-05-07T16:14:22,723   adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py'
2024-05-07T16:14:22,725   adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml'
2024-05-07T16:14:22,726   adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py'
2024-05-07T16:14:22,727   adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml'
2024-05-07T16:14:22,730   adding 'galaxy/tools/bundled/interactive/default_notebook.ipynb'
2024-05-07T16:14:22,731   adding 'galaxy/tools/bundled/interactive/interactivetool_askomics.xml'
2024-05-07T16:14:22,732   adding 'galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml'
2024-05-07T16:14:22,734   adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml'
2024-05-07T16:14:22,735   adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml'
2024-05-07T16:14:22,737   adding 'galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml'
2024-05-07T16:14:22,738   adding 'galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml'
2024-05-07T16:14:22,740   adding 'galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml'
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2024-05-07T16:14:22,754   adding 'galaxy/tools/bundled/interactive/interactivetool_metashark.xml'
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2024-05-07T16:14:22,761   adding 'galaxy/tools/bundled/interactive/interactivetool_openrefine.xml'
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2024-05-07T16:14:22,775   adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio.xml'
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2024-05-07T16:14:22,784   adding 'galaxy/tools/bundled/interactive/simtext_app.R'
2024-05-07T16:14:22,786   adding 'galaxy/tools/bundled/maf/__init__.py'
2024-05-07T16:14:22,788   adding 'galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml'
2024-05-07T16:14:22,789   adding 'galaxy/tools/bundled/maf/interval2maf.py'
2024-05-07T16:14:22,791   adding 'galaxy/tools/bundled/maf/interval2maf.xml'
2024-05-07T16:14:22,793   adding 'galaxy/tools/bundled/maf/interval2maf_pairwise.xml'
2024-05-07T16:14:22,795   adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py'
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2024-05-07T16:14:22,799   adding 'galaxy/tools/bundled/maf/maf_by_block_number.py'
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2024-05-07T16:14:22,801   adding 'galaxy/tools/bundled/maf/maf_filter.py'
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2024-05-07T16:14:22,804   adding 'galaxy/tools/bundled/maf/maf_limit_size.py'
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2024-05-07T16:14:22,807   adding 'galaxy/tools/bundled/maf/maf_limit_to_species.py'
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2024-05-07T16:14:22,809   adding 'galaxy/tools/bundled/maf/maf_reverse_complement.py'
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2024-05-07T16:14:22,812   adding 'galaxy/tools/bundled/maf/maf_split_by_species.py'
2024-05-07T16:14:22,813   adding 'galaxy/tools/bundled/maf/maf_split_by_species.xml'
2024-05-07T16:14:22,815   adding 'galaxy/tools/bundled/maf/maf_stats.py'
2024-05-07T16:14:22,817   adding 'galaxy/tools/bundled/maf/maf_stats.xml'
2024-05-07T16:14:22,818   adding 'galaxy/tools/bundled/maf/maf_thread_for_species.py'
2024-05-07T16:14:22,819   adding 'galaxy/tools/bundled/maf/maf_thread_for_species.xml'
2024-05-07T16:14:22,821   adding 'galaxy/tools/bundled/maf/maf_to_bed.py'
2024-05-07T16:14:22,823   adding 'galaxy/tools/bundled/maf/maf_to_bed.xml'
2024-05-07T16:14:22,825   adding 'galaxy/tools/bundled/maf/maf_to_bed_code.py'
2024-05-07T16:14:22,826   adding 'galaxy/tools/bundled/maf/maf_to_fasta.xml'
2024-05-07T16:14:22,828   adding 'galaxy/tools/bundled/maf/maf_to_fasta_concat.py'
2024-05-07T16:14:22,829   adding 'galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py'
2024-05-07T16:14:22,830   adding 'galaxy/tools/bundled/maf/maf_to_interval.py'
2024-05-07T16:14:22,832   adding 'galaxy/tools/bundled/maf/maf_to_interval.xml'
2024-05-07T16:14:22,834   adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py'
2024-05-07T16:14:22,835   adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml'
2024-05-07T16:14:22,837   adding 'galaxy/tools/bundled/meme/__init__.py'
2024-05-07T16:14:22,839   adding 'galaxy/tools/bundled/meme/fimo.xml'
2024-05-07T16:14:22,841   adding 'galaxy/tools/bundled/meme/fimo_wrapper.py'
2024-05-07T16:14:22,843   adding 'galaxy/tools/bundled/meme/meme.xml'
2024-05-07T16:14:22,845   adding 'galaxy/tools/bundled/metag_tools/__init__.py'
2024-05-07T16:14:22,846   adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.py'
2024-05-07T16:14:22,847   adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.xml'
2024-05-07T16:14:22,849   adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py'
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2024-05-07T16:14:22,854   adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.py'
2024-05-07T16:14:22,856   adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml'
2024-05-07T16:14:22,858   adding 'galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl'
2024-05-07T16:14:22,860   adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py'
2024-05-07T16:14:22,861   adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml'
2024-05-07T16:14:22,863   adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py'
2024-05-07T16:14:22,864   adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml'
2024-05-07T16:14:22,866   adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.py'
2024-05-07T16:14:22,868   adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml'
2024-05-07T16:14:22,869   adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py'
2024-05-07T16:14:22,870   adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml'
2024-05-07T16:14:22,872   adding 'galaxy/tools/bundled/ngs_simulation/__init__.py'
2024-05-07T16:14:22,874   adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.py'
2024-05-07T16:14:22,876   adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml'
2024-05-07T16:14:22,878   adding 'galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh'
2024-05-07T16:14:22,879   adding 'galaxy/tools/bundled/phenotype_association/__init__.py'
2024-05-07T16:14:22,881   adding 'galaxy/tools/bundled/phenotype_association/beam.xml'
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2024-05-07T16:14:22,885   adding 'galaxy/tools/bundled/phenotype_association/ldtools.xml'
2024-05-07T16:14:22,886   adding 'galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh'
2024-05-07T16:14:22,888   adding 'galaxy/tools/bundled/phenotype_association/linkToDavid.pl'
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2024-05-07T16:14:22,897   adding 'galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh'
2024-05-07T16:14:22,899   adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.pl'
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2024-05-07T16:14:22,904   adding 'galaxy/tools/bundled/phenotype_association/mergeSnps.pl'
2024-05-07T16:14:22,906   adding 'galaxy/tools/bundled/phenotype_association/pagetag.py'
2024-05-07T16:14:22,907   adding 'galaxy/tools/bundled/phenotype_association/pass.xml'
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2024-05-07T16:14:22,910   adding 'galaxy/tools/bundled/phenotype_association/senatag.py'
2024-05-07T16:14:22,912   adding 'galaxy/tools/bundled/phenotype_association/sift.xml'
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2024-05-07T16:14:22,915   adding 'galaxy/tools/bundled/plotting/bar_chart.py'
2024-05-07T16:14:22,917   adding 'galaxy/tools/bundled/plotting/bar_chart.xml'
2024-05-07T16:14:22,919   adding 'galaxy/tools/bundled/plotting/boxplot.xml'
2024-05-07T16:14:22,920   adding 'galaxy/tools/bundled/solid_tools/__init__.py'
2024-05-07T16:14:22,922   adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py'
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2024-05-07T16:14:22,925   adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py'
2024-05-07T16:14:22,926   adding 'galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh'
2024-05-07T16:14:22,927   adding 'galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml'
2024-05-07T16:14:22,928   adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.py'
2024-05-07T16:14:22,930   adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.xml'
2024-05-07T16:14:22,931   adding 'galaxy/tools/bundled/sr_assembly/__init__.py'
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2024-05-07T16:14:22,941   adding 'galaxy/tools/bundled/sr_mapping/PerM.xml'
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2024-05-07T16:14:22,948   adding 'galaxy/tools/bundled/sr_mapping/fastq_statistics.xml'
2024-05-07T16:14:22,949   adding 'galaxy/tools/bundled/sr_mapping/mosaik.xml'
2024-05-07T16:14:22,951   adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.py'
2024-05-07T16:14:22,953   adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.xml'
2024-05-07T16:14:22,955   adding 'galaxy/tools/bundled/stats/__init__.py'
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2024-05-07T16:14:22,961   adding 'galaxy/tools/bundled/stats/filtering.xml'
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2024-05-07T16:14:22,966   adding 'galaxy/tools/bundled/stats/grouping.xml'
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2024-05-07T16:14:22,972   adding 'galaxy/tools/data/__init__.py'
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2024-05-07T16:14:22,978   adding 'galaxy/tools/error_reports/__init__.py'
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2024-05-07T16:14:22,993   adding 'galaxy/tools/expressions/__init__.py'
2024-05-07T16:14:22,995   adding 'galaxy/tools/expressions/cwlNodeEngine.js'
2024-05-07T16:14:22,996   adding 'galaxy/tools/expressions/evaluation.py'
2024-05-07T16:14:22,997   adding 'galaxy/tools/expressions/script.py'
2024-05-07T16:14:22,998   adding 'galaxy/tools/expressions/util.py'
2024-05-07T16:14:23,000   adding 'galaxy/tools/filters/__init__.py'
2024-05-07T16:14:23,002   adding 'galaxy/tools/imp_exp/__init__.py'
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2024-05-07T16:14:23,006   adding 'galaxy/tools/imp_exp/imp_history_from_archive.xml'
2024-05-07T16:14:23,008   adding 'galaxy/tools/imp_exp/unpack_tar_gz_archive.py'
2024-05-07T16:14:23,012   adding 'galaxy/tools/parameters/__init__.py'
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2024-05-07T16:14:23,041   adding 'galaxy/tools/parameters/meta.py'
2024-05-07T16:14:23,043   adding 'galaxy/tools/parameters/sanitize.py'
2024-05-07T16:14:23,046   adding 'galaxy/tools/parameters/validation.py'
2024-05-07T16:14:23,047   adding 'galaxy/tools/parameters/workflow_utils.py'
2024-05-07T16:14:23,048   adding 'galaxy/tools/parameters/wrapped.py'
2024-05-07T16:14:23,050   adding 'galaxy/tools/parameters/wrapped_json.py'
2024-05-07T16:14:23,053   adding 'galaxy/tools/search/__init__.py'
2024-05-07T16:14:23,054   adding 'galaxy/tools/util/__init__.py'
2024-05-07T16:14:23,058   adding 'galaxy/tools/util/maf_utilities.py'
2024-05-07T16:14:23,060   adding 'galaxy/tools/util/galaxyops/__init__.py'
2024-05-07T16:14:23,061   adding 'galaxy/visualization/__init__.py'
2024-05-07T16:14:23,064   adding 'galaxy/visualization/genomes.py'
2024-05-07T16:14:23,065   adding 'galaxy/visualization/data_providers/__init__.py'
2024-05-07T16:14:23,067   adding 'galaxy/visualization/data_providers/basic.py'
2024-05-07T16:14:23,068   adding 'galaxy/visualization/data_providers/cigar.py'
2024-05-07T16:14:23,075   adding 'galaxy/visualization/data_providers/genome.py'
2024-05-07T16:14:23,077   adding 'galaxy/visualization/data_providers/registry.py'
2024-05-07T16:14:23,079   adding 'galaxy/visualization/data_providers/phyloviz/__init__.py'
2024-05-07T16:14:23,081   adding 'galaxy/visualization/data_providers/phyloviz/baseparser.py'
2024-05-07T16:14:23,082   adding 'galaxy/visualization/data_providers/phyloviz/newickparser.py'
2024-05-07T16:14:23,084   adding 'galaxy/visualization/data_providers/phyloviz/nexusparser.py'
2024-05-07T16:14:23,085   adding 'galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py'
2024-05-07T16:14:23,087   adding 'galaxy/visualization/genome/__init__.py'
2024-05-07T16:14:23,088   adding 'galaxy/visualization/plugins/__init__.py'
2024-05-07T16:14:23,091   adding 'galaxy/visualization/plugins/config_parser.py'
2024-05-07T16:14:23,093   adding 'galaxy/visualization/plugins/plugin.py'
2024-05-07T16:14:23,095   adding 'galaxy/visualization/plugins/registry.py'
2024-05-07T16:14:23,097   adding 'galaxy/visualization/plugins/resource_parser.py'
2024-05-07T16:14:23,098   adding 'galaxy/visualization/plugins/utils.py'
2024-05-07T16:14:23,100   adding 'galaxy/visualization/tracks/__init__.py'
2024-05-07T16:14:23,102   adding 'galaxy/webhooks/__init__.py'
2024-05-07T16:14:23,104   adding 'galaxy/work/__init__.py'
2024-05-07T16:14:23,106   adding 'galaxy/work/context.py'
2024-05-07T16:14:23,107   adding 'galaxy/workflow/__init__.py'
2024-05-07T16:14:23,110   adding 'galaxy/workflow/extract.py'
2024-05-07T16:14:23,123   adding 'galaxy/workflow/modules.py'
2024-05-07T16:14:23,125   adding 'galaxy/workflow/render.py'
2024-05-07T16:14:23,129   adding 'galaxy/workflow/run.py'
2024-05-07T16:14:23,133   adding 'galaxy/workflow/run_request.py'
2024-05-07T16:14:23,135   adding 'galaxy/workflow/scheduling_manager.py'
2024-05-07T16:14:23,137   adding 'galaxy/workflow/steps.py'
2024-05-07T16:14:23,138   adding 'galaxy/workflow/trs_proxy.py'
2024-05-07T16:14:23,140   adding 'galaxy/workflow/refactor/__init__.py'
2024-05-07T16:14:23,143   adding 'galaxy/workflow/refactor/execute.py'
2024-05-07T16:14:23,145   adding 'galaxy/workflow/refactor/schema.py'
2024-05-07T16:14:23,146   adding 'galaxy/workflow/reports/__init__.py'
2024-05-07T16:14:23,148   adding 'galaxy/workflow/reports/generators/__init__.py'
2024-05-07T16:14:23,149   adding 'galaxy/workflow/reports/generators/markdown.py'
2024-05-07T16:14:23,151   adding 'galaxy/workflow/resources/__init__.py'
2024-05-07T16:14:23,152   adding 'galaxy/workflow/resources/example.py.sample'
2024-05-07T16:14:23,154   adding 'galaxy/workflow/schedulers/__init__.py'
2024-05-07T16:14:23,155   adding 'galaxy/workflow/schedulers/core.py'
2024-05-07T16:14:23,157   adding 'galaxy_ext/__init__.py'
2024-05-07T16:14:23,158   adding 'galaxy_ext/py.typed'
2024-05-07T16:14:23,160   adding 'galaxy_ext/container_monitor/__init__.py'
2024-05-07T16:14:23,161   adding 'galaxy_ext/container_monitor/monitor.py'
2024-05-07T16:14:23,162   adding 'galaxy_ext/expressions/__init__.py'
2024-05-07T16:14:23,164   adding 'galaxy_ext/expressions/handle_job.py'
2024-05-07T16:14:23,165   adding 'galaxy_ext/metadata/__init__.py'
2024-05-07T16:14:23,167   adding 'galaxy_ext/metadata/set_metadata.py'
2024-05-07T16:14:23,168   adding 'tool_shed_client/__init__.py'
2024-05-07T16:14:23,169   adding 'tool_shed_client/py.typed'
2024-05-07T16:14:23,170   adding 'tool_shed_client/trs_util.py'
2024-05-07T16:14:23,172   adding 'tool_shed_client/schema/__init__.py'
2024-05-07T16:14:23,174   adding 'tool_shed_client/schema/trs.py'
2024-05-07T16:14:23,176   adding 'tool_shed_client/schema/trs_service_info.py'
2024-05-07T16:14:23,178   adding 'galaxy_app-24.0.2.dist-info/LICENSE'
2024-05-07T16:14:23,183   adding 'galaxy_app-24.0.2.dist-info/METADATA'
2024-05-07T16:14:23,185   adding 'galaxy_app-24.0.2.dist-info/WHEEL'
2024-05-07T16:14:23,186   adding 'galaxy_app-24.0.2.dist-info/entry_points.txt'
2024-05-07T16:14:23,187   adding 'galaxy_app-24.0.2.dist-info/top_level.txt'
2024-05-07T16:14:23,196   adding 'galaxy_app-24.0.2.dist-info/RECORD'
2024-05-07T16:14:23,221   removing build/bdist.linux-armv7l/wheel
2024-05-07T16:14:23,467   Building wheel for galaxy-app (pyproject.toml): finished with status 'done'
2024-05-07T16:14:23,499   Created wheel for galaxy-app: filename=galaxy_app-24.0.2-py3-none-any.whl size=1458717 sha256=c42cadb7f2e6473f37ca6a906c35ab3eccaa056126134a7519406842ef57b63f
2024-05-07T16:14:23,500   Stored in directory: /tmp/pip-ephem-wheel-cache-qum0po3e/wheels/1a/91/e0/68a7ef07bc1f3d3ee9318f7e29cf9f67b65bab350774f879b1
2024-05-07T16:14:23,537 Successfully built galaxy-app
2024-05-07T16:14:23,572 Removed build tracker: '/tmp/pip-build-tracker-j6sim20v'