2024-05-07T18:10:39,090 Created temporary directory: /tmp/pip-build-tracker-_3efgad8 2024-05-07T18:10:39,092 Initialized build tracking at /tmp/pip-build-tracker-_3efgad8 2024-05-07T18:10:39,092 Created build tracker: /tmp/pip-build-tracker-_3efgad8 2024-05-07T18:10:39,093 Entered build tracker: /tmp/pip-build-tracker-_3efgad8 2024-05-07T18:10:39,093 Created temporary directory: /tmp/pip-wheel-drqw_bk2 2024-05-07T18:10:39,097 Created temporary directory: /tmp/pip-ephem-wheel-cache-qrslb3j2 2024-05-07T18:10:39,120 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-07T18:10:39,124 2 location(s) to search for versions of tangermeme: 2024-05-07T18:10:39,124 * https://pypi.org/simple/tangermeme/ 2024-05-07T18:10:39,124 * https://www.piwheels.org/simple/tangermeme/ 2024-05-07T18:10:39,125 Fetching project page and analyzing links: https://pypi.org/simple/tangermeme/ 2024-05-07T18:10:39,125 Getting page https://pypi.org/simple/tangermeme/ 2024-05-07T18:10:39,127 Found index url https://pypi.org/simple/ 2024-05-07T18:10:39,346 Fetched page https://pypi.org/simple/tangermeme/ as application/vnd.pypi.simple.v1+json 2024-05-07T18:10:39,348 Skipping link: No binaries permitted for tangermeme: https://files.pythonhosted.org/packages/a9/e0/853e8caeb0d5f4b8fc911ef2757748fff62b26f2ca856819f98d89fd6b5d/tangermeme-0.0.1-py3-none-any.whl (from https://pypi.org/simple/tangermeme/) 2024-05-07T18:10:39,349 Found link https://files.pythonhosted.org/packages/61/41/c9434c381d7fea99951710f47cc3751dcb10002c90cfaf60d3187b7e6665/tangermeme-0.0.1.tar.gz (from https://pypi.org/simple/tangermeme/), version: 0.0.1 2024-05-07T18:10:39,350 Skipping link: No binaries permitted for tangermeme: https://files.pythonhosted.org/packages/8f/21/8567311fe56325b390a914dc5d41efd9646e2277857d10c50338c740a7ce/tangermeme-0.1.0rc0-py3-none-any.whl (from https://pypi.org/simple/tangermeme/) 2024-05-07T18:10:39,350 Found link https://files.pythonhosted.org/packages/05/7a/373121f7e2cdb51984d1c0c24ea4ed2d9328846e863ad517ed07ead9a88f/tangermeme-0.1.0rc0.tar.gz (from https://pypi.org/simple/tangermeme/), version: 0.1.0rc0 2024-05-07T18:10:39,351 Skipping link: No binaries permitted for tangermeme: https://files.pythonhosted.org/packages/7f/5a/9a9b74932c857fce18dfdeea136beccd406a29bd7d8c4b31ed26db4cde32/tangermeme-0.1.0-py3-none-any.whl (from https://pypi.org/simple/tangermeme/) 2024-05-07T18:10:39,351 Found link https://files.pythonhosted.org/packages/9f/f1/5253f9a39e1835bd6dc7ef5adc3c32cbb825b3ef47b84edc8caeee500edb/tangermeme-0.1.0.tar.gz (from https://pypi.org/simple/tangermeme/), version: 0.1.0 2024-05-07T18:10:39,352 Skipping link: No binaries permitted for tangermeme: https://files.pythonhosted.org/packages/85/98/8b03de434fb8d1de09875fb9c4e49b67f54d4f819b1932af6e81c50ff58d/tangermeme-0.2.0-py3-none-any.whl (from https://pypi.org/simple/tangermeme/) 2024-05-07T18:10:39,353 Found link https://files.pythonhosted.org/packages/4e/7c/b5b0c87ab75d6da3a0f64868a528224386672c478a251ee755d9aa5ea092/tangermeme-0.2.0.tar.gz (from https://pypi.org/simple/tangermeme/), version: 0.2.0 2024-05-07T18:10:39,353 Fetching project page and analyzing links: https://www.piwheels.org/simple/tangermeme/ 2024-05-07T18:10:39,354 Getting page https://www.piwheels.org/simple/tangermeme/ 2024-05-07T18:10:39,355 Found index url https://www.piwheels.org/simple/ 2024-05-07T18:10:39,521 Fetched page https://www.piwheels.org/simple/tangermeme/ as text/html 2024-05-07T18:10:39,524 Skipping link: No binaries permitted for tangermeme: https://www.piwheels.org/simple/tangermeme/tangermeme-0.1.0-py3-none-any.whl#sha256=6c23d1bf94f5b24ed50311d61ddb1e4c49b9ba9d5e9bb8a22c4679df9711b983 (from https://www.piwheels.org/simple/tangermeme/) 2024-05-07T18:10:39,524 Skipping link: No binaries permitted for tangermeme: https://www.piwheels.org/simple/tangermeme/tangermeme-0.1.0rc0-py3-none-any.whl#sha256=e6dad2c5e1551460aff817aa6a1fd7d8b62976244d57b6219301623bb3b0f7bb (from https://www.piwheels.org/simple/tangermeme/) 2024-05-07T18:10:39,525 Skipping link: No binaries permitted for tangermeme: https://www.piwheels.org/simple/tangermeme/tangermeme-0.0.1-py3-none-any.whl#sha256=623e295dad1d60f7e2d1b6a311127178008994cb6b727cfc2fb7c7bf2511c18b (from https://www.piwheels.org/simple/tangermeme/) 2024-05-07T18:10:39,526 Skipping link: not a file: https://www.piwheels.org/simple/tangermeme/ 2024-05-07T18:10:39,527 Skipping link: not a file: https://pypi.org/simple/tangermeme/ 2024-05-07T18:10:39,545 Given no hashes to check 1 links for project 'tangermeme': discarding no candidates 2024-05-07T18:10:39,563 Collecting tangermeme==0.2.0 2024-05-07T18:10:39,565 Created temporary directory: /tmp/pip-unpack-l6uzy4vc 2024-05-07T18:10:39,780 Downloading tangermeme-0.2.0.tar.gz (88 kB) 2024-05-07T18:10:39,944 Added tangermeme==0.2.0 from https://files.pythonhosted.org/packages/4e/7c/b5b0c87ab75d6da3a0f64868a528224386672c478a251ee755d9aa5ea092/tangermeme-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-_3efgad8' 2024-05-07T18:10:39,946 Running setup.py (path:/tmp/pip-wheel-drqw_bk2/tangermeme_e83e0698243c406c8142d630a99e8a1c/setup.py) egg_info for package tangermeme 2024-05-07T18:10:39,946 Created temporary directory: /tmp/pip-pip-egg-info-ci238j8w 2024-05-07T18:10:39,947 Preparing metadata (setup.py): started 2024-05-07T18:10:39,948 Running command python setup.py egg_info 2024-05-07T18:10:41,029 running egg_info 2024-05-07T18:10:41,030 creating /tmp/pip-pip-egg-info-ci238j8w/tangermeme.egg-info 2024-05-07T18:10:41,055 writing /tmp/pip-pip-egg-info-ci238j8w/tangermeme.egg-info/PKG-INFO 2024-05-07T18:10:41,058 writing dependency_links to /tmp/pip-pip-egg-info-ci238j8w/tangermeme.egg-info/dependency_links.txt 2024-05-07T18:10:41,060 writing requirements to /tmp/pip-pip-egg-info-ci238j8w/tangermeme.egg-info/requires.txt 2024-05-07T18:10:41,062 writing top-level names to /tmp/pip-pip-egg-info-ci238j8w/tangermeme.egg-info/top_level.txt 2024-05-07T18:10:41,063 writing manifest file '/tmp/pip-pip-egg-info-ci238j8w/tangermeme.egg-info/SOURCES.txt' 2024-05-07T18:10:41,147 reading manifest file '/tmp/pip-pip-egg-info-ci238j8w/tangermeme.egg-info/SOURCES.txt' 2024-05-07T18:10:41,148 adding license file 'LICENSE' 2024-05-07T18:10:41,151 writing manifest file '/tmp/pip-pip-egg-info-ci238j8w/tangermeme.egg-info/SOURCES.txt' 2024-05-07T18:10:41,270 Preparing metadata (setup.py): finished with status 'done' 2024-05-07T18:10:41,274 Source in /tmp/pip-wheel-drqw_bk2/tangermeme_e83e0698243c406c8142d630a99e8a1c has version 0.2.0, which satisfies requirement tangermeme==0.2.0 from https://files.pythonhosted.org/packages/4e/7c/b5b0c87ab75d6da3a0f64868a528224386672c478a251ee755d9aa5ea092/tangermeme-0.2.0.tar.gz 2024-05-07T18:10:41,275 Removed tangermeme==0.2.0 from https://files.pythonhosted.org/packages/4e/7c/b5b0c87ab75d6da3a0f64868a528224386672c478a251ee755d9aa5ea092/tangermeme-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-_3efgad8' 2024-05-07T18:10:41,279 Created temporary directory: /tmp/pip-unpack-1v_kuhf1 2024-05-07T18:10:41,280 Created temporary directory: /tmp/pip-unpack-zt8mpl5b 2024-05-07T18:10:41,295 Building wheels for collected packages: tangermeme 2024-05-07T18:10:41,299 Created temporary directory: /tmp/pip-wheel-ww9d75ar 2024-05-07T18:10:41,300 Building wheel for tangermeme (setup.py): started 2024-05-07T18:10:41,301 Destination directory: /tmp/pip-wheel-ww9d75ar 2024-05-07T18:10:41,302 Running command python setup.py bdist_wheel 2024-05-07T18:10:42,367 running bdist_wheel 2024-05-07T18:10:42,463 running build 2024-05-07T18:10:42,464 running build_py 2024-05-07T18:10:42,491 creating build 2024-05-07T18:10:42,492 creating build/lib 2024-05-07T18:10:42,493 creating build/lib/tangermeme 2024-05-07T18:10:42,494 copying tangermeme/product.py -> build/lib/tangermeme 2024-05-07T18:10:42,497 copying tangermeme/__init__.py -> build/lib/tangermeme 2024-05-07T18:10:42,498 copying tangermeme/marginalize.py -> build/lib/tangermeme 2024-05-07T18:10:42,501 copying tangermeme/seqlet.py -> build/lib/tangermeme 2024-05-07T18:10:42,503 copying tangermeme/match.py -> build/lib/tangermeme 2024-05-07T18:10:42,505 copying tangermeme/io.py -> build/lib/tangermeme 2024-05-07T18:10:42,508 copying tangermeme/ism.py -> build/lib/tangermeme 2024-05-07T18:10:42,510 copying tangermeme/space.py -> build/lib/tangermeme 2024-05-07T18:10:42,512 copying tangermeme/predict.py -> build/lib/tangermeme 2024-05-07T18:10:42,513 copying tangermeme/variant_effect.py -> build/lib/tangermeme 2024-05-07T18:10:42,516 copying tangermeme/ersatz.py -> build/lib/tangermeme 2024-05-07T18:10:42,519 copying tangermeme/deep_lift_shap.py -> build/lib/tangermeme 2024-05-07T18:10:42,521 copying tangermeme/ablate.py -> build/lib/tangermeme 2024-05-07T18:10:42,523 copying tangermeme/design.py -> build/lib/tangermeme 2024-05-07T18:10:42,525 copying tangermeme/utils.py -> build/lib/tangermeme 2024-05-07T18:10:42,527 copying tangermeme/plot.py -> build/lib/tangermeme 2024-05-07T18:10:42,530 copying tangermeme/kmers.py -> build/lib/tangermeme 2024-05-07T18:10:42,532 creating build/lib/tangermeme/tools 2024-05-07T18:10:42,533 copying tangermeme/tools/__init__.py -> build/lib/tangermeme/tools 2024-05-07T18:10:42,534 copying tangermeme/tools/tomtom.py -> build/lib/tangermeme/tools 2024-05-07T18:10:42,536 copying tangermeme/tools/fimo.py -> build/lib/tangermeme/tools 2024-05-07T18:10:42,566 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-07T18:10:42,567 !! 2024-05-07T18:10:42,568 ******************************************************************************** 2024-05-07T18:10:42,568 Please avoid running ``setup.py`` directly. 2024-05-07T18:10:42,569 Instead, use pypa/build, pypa/installer or other 2024-05-07T18:10:42,569 standards-based tools. 2024-05-07T18:10:42,571 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-07T18:10:42,571 ******************************************************************************** 2024-05-07T18:10:42,572 !! 2024-05-07T18:10:42,572 self.initialize_options() 2024-05-07T18:10:42,592 installing to build/bdist.linux-armv7l/wheel 2024-05-07T18:10:42,593 running install 2024-05-07T18:10:42,617 running install_lib 2024-05-07T18:10:42,645 creating build/bdist.linux-armv7l 2024-05-07T18:10:42,646 creating build/bdist.linux-armv7l/wheel 2024-05-07T18:10:42,648 creating build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,649 copying build/lib/tangermeme/product.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,651 copying build/lib/tangermeme/__init__.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,653 copying build/lib/tangermeme/marginalize.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,655 copying build/lib/tangermeme/seqlet.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,657 copying build/lib/tangermeme/match.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,660 copying build/lib/tangermeme/io.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,662 copying build/lib/tangermeme/ism.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,664 copying build/lib/tangermeme/space.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,666 copying build/lib/tangermeme/predict.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,668 copying build/lib/tangermeme/variant_effect.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,671 copying build/lib/tangermeme/ersatz.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,673 copying build/lib/tangermeme/deep_lift_shap.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,676 copying build/lib/tangermeme/ablate.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,678 copying build/lib/tangermeme/design.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,680 copying build/lib/tangermeme/utils.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,682 copying build/lib/tangermeme/plot.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,685 copying build/lib/tangermeme/kmers.py -> build/bdist.linux-armv7l/wheel/tangermeme 2024-05-07T18:10:42,687 creating build/bdist.linux-armv7l/wheel/tangermeme/tools 2024-05-07T18:10:42,688 copying build/lib/tangermeme/tools/__init__.py -> build/bdist.linux-armv7l/wheel/tangermeme/tools 2024-05-07T18:10:42,690 copying build/lib/tangermeme/tools/tomtom.py -> build/bdist.linux-armv7l/wheel/tangermeme/tools 2024-05-07T18:10:42,691 copying build/lib/tangermeme/tools/fimo.py -> build/bdist.linux-armv7l/wheel/tangermeme/tools 2024-05-07T18:10:42,694 running install_egg_info 2024-05-07T18:10:42,758 running egg_info 2024-05-07T18:10:42,783 writing tangermeme.egg-info/PKG-INFO 2024-05-07T18:10:42,786 writing dependency_links to tangermeme.egg-info/dependency_links.txt 2024-05-07T18:10:42,788 writing requirements to tangermeme.egg-info/requires.txt 2024-05-07T18:10:42,789 writing top-level names to tangermeme.egg-info/top_level.txt 2024-05-07T18:10:42,818 reading manifest file 'tangermeme.egg-info/SOURCES.txt' 2024-05-07T18:10:42,821 adding license file 'LICENSE' 2024-05-07T18:10:42,824 writing manifest file 'tangermeme.egg-info/SOURCES.txt' 2024-05-07T18:10:42,825 Copying tangermeme.egg-info to build/bdist.linux-armv7l/wheel/tangermeme-0.2.0-py3.11.egg-info 2024-05-07T18:10:42,835 running install_scripts 2024-05-07T18:10:42,850 creating build/bdist.linux-armv7l/wheel/tangermeme-0.2.0.dist-info/WHEEL 2024-05-07T18:10:42,853 creating '/tmp/pip-wheel-ww9d75ar/tangermeme-0.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-07T18:10:42,855 adding 'tangermeme/__init__.py' 2024-05-07T18:10:42,857 adding 'tangermeme/ablate.py' 2024-05-07T18:10:42,861 adding 'tangermeme/deep_lift_shap.py' 2024-05-07T18:10:42,863 adding 'tangermeme/design.py' 2024-05-07T18:10:42,866 adding 'tangermeme/ersatz.py' 2024-05-07T18:10:42,868 adding 'tangermeme/io.py' 2024-05-07T18:10:42,870 adding 'tangermeme/ism.py' 2024-05-07T18:10:42,872 adding 'tangermeme/kmers.py' 2024-05-07T18:10:42,874 adding 'tangermeme/marginalize.py' 2024-05-07T18:10:42,876 adding 'tangermeme/match.py' 2024-05-07T18:10:42,877 adding 'tangermeme/plot.py' 2024-05-07T18:10:42,879 adding 'tangermeme/predict.py' 2024-05-07T18:10:42,881 adding 'tangermeme/product.py' 2024-05-07T18:10:42,883 adding 'tangermeme/seqlet.py' 2024-05-07T18:10:42,884 adding 'tangermeme/space.py' 2024-05-07T18:10:42,886 adding 'tangermeme/utils.py' 2024-05-07T18:10:42,888 adding 'tangermeme/variant_effect.py' 2024-05-07T18:10:42,890 adding 'tangermeme/tools/__init__.py' 2024-05-07T18:10:42,892 adding 'tangermeme/tools/fimo.py' 2024-05-07T18:10:42,893 adding 'tangermeme/tools/tomtom.py' 2024-05-07T18:10:42,895 adding 'tangermeme-0.2.0.dist-info/LICENSE' 2024-05-07T18:10:42,896 adding 'tangermeme-0.2.0.dist-info/METADATA' 2024-05-07T18:10:42,897 adding 'tangermeme-0.2.0.dist-info/WHEEL' 2024-05-07T18:10:42,898 adding 'tangermeme-0.2.0.dist-info/top_level.txt' 2024-05-07T18:10:42,899 adding 'tangermeme-0.2.0.dist-info/RECORD' 2024-05-07T18:10:42,901 removing build/bdist.linux-armv7l/wheel 2024-05-07T18:10:43,029 Building wheel for tangermeme (setup.py): finished with status 'done' 2024-05-07T18:10:43,032 Created wheel for tangermeme: filename=tangermeme-0.2.0-py3-none-any.whl size=59609 sha256=cb8019a48b97b8ce5e24371e7413c6c6bfe3ee1f3f114bd0b40b3fbcbf35f945 2024-05-07T18:10:43,033 Stored in directory: /tmp/pip-ephem-wheel-cache-qrslb3j2/wheels/b4/fe/c4/41c395f15cab2b29f622b550c4a0484985996ae3edaf454492 2024-05-07T18:10:43,043 Successfully built tangermeme 2024-05-07T18:10:43,048 Removed build tracker: '/tmp/pip-build-tracker-_3efgad8'