2024-05-08T17:49:37,340 Created temporary directory: /tmp/pip-build-tracker-_g293hdc 2024-05-08T17:49:37,341 Initialized build tracking at /tmp/pip-build-tracker-_g293hdc 2024-05-08T17:49:37,341 Created build tracker: /tmp/pip-build-tracker-_g293hdc 2024-05-08T17:49:37,342 Entered build tracker: /tmp/pip-build-tracker-_g293hdc 2024-05-08T17:49:37,342 Created temporary directory: /tmp/pip-wheel-z52fbc0n 2024-05-08T17:49:37,346 Created temporary directory: /tmp/pip-ephem-wheel-cache-p2n_qfn3 2024-05-08T17:49:37,371 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-08T17:49:37,374 2 location(s) to search for versions of scilpy: 2024-05-08T17:49:37,374 * https://pypi.org/simple/scilpy/ 2024-05-08T17:49:37,374 * https://www.piwheels.org/simple/scilpy/ 2024-05-08T17:49:37,375 Fetching project page and analyzing links: https://pypi.org/simple/scilpy/ 2024-05-08T17:49:37,375 Getting page https://pypi.org/simple/scilpy/ 2024-05-08T17:49:37,377 Found index url https://pypi.org/simple/ 2024-05-08T17:49:37,429 Fetched page https://pypi.org/simple/scilpy/ as application/vnd.pypi.simple.v1+json 2024-05-08T17:49:37,433 Found link https://files.pythonhosted.org/packages/fc/2a/50d559ef46fb2d42ab0f8fbf3da9b077d522cf242a284c950ba7508cf9d1/scilpy-0.2.dev0.tar.gz (from https://pypi.org/simple/scilpy/), version: 0.2.dev0 2024-05-08T17:49:37,433 Skipping link: No binaries permitted for scilpy: https://files.pythonhosted.org/packages/68/5b/160b7def3cfb0a5de995bc878895c1c51384b06b02cbe195711e2c55b7aa/scilpy-1.5.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scilpy/) (requires-python:~=3.8,<3.11) 2024-05-08T17:49:37,434 Skipping link: No binaries permitted for scilpy: https://files.pythonhosted.org/packages/63/09/cf207e968fed291956d4c2fe748764d02dc42e98e67479e4be3f4f3d3b55/scilpy-1.5.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scilpy/) (requires-python:~=3.8,<3.11) 2024-05-08T17:49:37,434 Skipping link: No binaries permitted for scilpy: https://files.pythonhosted.org/packages/5f/60/3c9ba56a83a8ca1b73fe658c48c51c0023214ef7ab294b07baab96b03578/scilpy-1.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scilpy/) (requires-python:~=3.8,<3.11) 2024-05-08T17:49:37,435 Found link https://files.pythonhosted.org/packages/ed/c6/db658cf822392685ea33e78beebc2a98a4f4dc6f20795b830c5853e20a8f/scilpy-1.5.0.tar.gz (from https://pypi.org/simple/scilpy/) (requires-python:~=3.8,<3.11), version: 1.5.0 2024-05-08T17:49:37,435 Skipping link: No binaries permitted for scilpy: https://files.pythonhosted.org/packages/85/35/af43f0811237291f7515e3aabfd3a0c27b0e3a2a6737b8c583196602a595/scilpy-1.5.post2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scilpy/) (requires-python:~=3.8,<3.11) 2024-05-08T17:49:37,435 Skipping link: No binaries permitted for scilpy: https://files.pythonhosted.org/packages/06/a6/cb1fe978af8bb5ba6e197c84bb88a1954975872b2b0b08c186b263ff3756/scilpy-1.5.post2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scilpy/) (requires-python:~=3.8,<3.11) 2024-05-08T17:49:37,435 Skipping link: No binaries permitted for scilpy: https://files.pythonhosted.org/packages/3a/86/62a9ad50dc407e1741089780533246771ffa72c8113368db26cbd33b0f1f/scilpy-1.5.post2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scilpy/) (requires-python:~=3.8,<3.11) 2024-05-08T17:49:37,436 Found link https://files.pythonhosted.org/packages/63/cf/cd6532740cb57b56ac4d71529341641e736557bead414e1d9b40c7130d6f/scilpy-1.5.post2.tar.gz (from https://pypi.org/simple/scilpy/) (requires-python:~=3.8,<3.11), version: 1.5.post2 2024-05-08T17:49:37,437 Skipping link: No binaries permitted for scilpy: https://files.pythonhosted.org/packages/53/23/fe49f865e6c9dd7d435590787bcab9734129a2a45cf81dc54795de046251/scilpy-2.0.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scilpy/) (requires-python:<3.11,>=3.9) 2024-05-08T17:49:37,437 Skipping link: No binaries permitted for scilpy: https://files.pythonhosted.org/packages/30/ae/c61db7f1a29b5d57a7448a9ab39503aceaf3286d2f5ff1d7191830317be1/scilpy-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scilpy/) (requires-python:<3.11,>=3.9) 2024-05-08T17:49:37,438 Found link https://files.pythonhosted.org/packages/63/d9/27a2c31fb8d56499a234ecefb67baf3f7ffd5f9954b9e63f8391173956af/scilpy-2.0.0.tar.gz (from https://pypi.org/simple/scilpy/) (requires-python:<3.11,>=3.9), version: 2.0.0 2024-05-08T17:49:37,438 Skipping link: No binaries permitted for scilpy: https://files.pythonhosted.org/packages/7f/c7/b680a936862d04132a6cf6e7823368c2d414cb0cb870ec431f420d8f361c/scilpy-2.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scilpy/) (requires-python:<3.11,>=3.9) 2024-05-08T17:49:37,438 Skipping link: No binaries permitted for scilpy: https://files.pythonhosted.org/packages/38/ce/d0d62b558eb83310ffa7531ba860b74bb90a1c1fe099c07107f74dcd8f33/scilpy-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scilpy/) (requires-python:<3.11,>=3.9) 2024-05-08T17:49:37,439 Found link https://files.pythonhosted.org/packages/11/f8/3a4d7f964350ba28d8f9f57bbea9509cc9d673323e1692e15cee5ea8f31e/scilpy-2.0.1.tar.gz (from https://pypi.org/simple/scilpy/) (requires-python:<3.11,>=3.9), version: 2.0.1 2024-05-08T17:49:37,439 Fetching project page and analyzing links: https://www.piwheels.org/simple/scilpy/ 2024-05-08T17:49:37,439 Getting page https://www.piwheels.org/simple/scilpy/ 2024-05-08T17:49:37,440 Found index url https://www.piwheels.org/simple/ 2024-05-08T17:49:37,516 Fetched page https://www.piwheels.org/simple/scilpy/ as text/html 2024-05-08T17:49:37,520 Skipping link: No binaries permitted for scilpy: https://www.piwheels.org/simple/scilpy/scilpy-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=93daca21f00b9d93f3014b04fd463f5ab153990aaf078601f80d57bf047c2f3c (from https://www.piwheels.org/simple/scilpy/) (requires-python:>=3.9,<3.11) 2024-05-08T17:49:37,521 Skipping link: No binaries permitted for scilpy: https://www.piwheels.org/simple/scilpy/scilpy-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=93daca21f00b9d93f3014b04fd463f5ab153990aaf078601f80d57bf047c2f3c (from https://www.piwheels.org/simple/scilpy/) (requires-python:>=3.9,<3.11) 2024-05-08T17:49:37,521 Skipping link: No binaries permitted for scilpy: https://www.piwheels.org/simple/scilpy/scilpy-1.5.post2-cp39-cp39-linux_armv6l.whl#sha256=4c2fce848cd6aca1e6e175977de3a6669eea310d4848eab74f66a8ab69991acf (from https://www.piwheels.org/simple/scilpy/) (requires-python:~=3.8,<3.11) 2024-05-08T17:49:37,521 Skipping link: No binaries permitted for scilpy: https://www.piwheels.org/simple/scilpy/scilpy-1.5.post2-cp39-cp39-linux_armv7l.whl#sha256=4c2fce848cd6aca1e6e175977de3a6669eea310d4848eab74f66a8ab69991acf (from https://www.piwheels.org/simple/scilpy/) (requires-python:~=3.8,<3.11) 2024-05-08T17:49:37,521 Skipping link: No binaries permitted for scilpy: https://www.piwheels.org/simple/scilpy/scilpy-1.5.0-cp39-cp39-linux_armv6l.whl#sha256=7673d2adc10be42497d2fba658bc2c0064063e30ad1aa08b464920732b79dccd (from https://www.piwheels.org/simple/scilpy/) (requires-python:~=3.8,<3.11) 2024-05-08T17:49:37,521 Skipping link: No binaries permitted for scilpy: https://www.piwheels.org/simple/scilpy/scilpy-1.5.0-cp39-cp39-linux_armv7l.whl#sha256=7673d2adc10be42497d2fba658bc2c0064063e30ad1aa08b464920732b79dccd (from https://www.piwheels.org/simple/scilpy/) (requires-python:~=3.8,<3.11) 2024-05-08T17:49:37,522 Skipping link: No binaries permitted for scilpy: https://www.piwheels.org/simple/scilpy/scilpy-0.2.dev0-cp37-cp37m-linux_armv6l.whl#sha256=1fe2a44941abfb6397d0634d6699f74930df00a3b74154d5a3ec7c754ad6bcab (from https://www.piwheels.org/simple/scilpy/) 2024-05-08T17:49:37,522 Skipping link: No binaries permitted for scilpy: https://www.piwheels.org/simple/scilpy/scilpy-0.2.dev0-cp37-cp37m-linux_armv7l.whl#sha256=1fe2a44941abfb6397d0634d6699f74930df00a3b74154d5a3ec7c754ad6bcab (from https://www.piwheels.org/simple/scilpy/) 2024-05-08T17:49:37,522 Skipping link: No binaries permitted for scilpy: https://www.piwheels.org/simple/scilpy/scilpy-0.2.dev0-cp39-cp39-linux_armv6l.whl#sha256=4d60471b8bc262bab66213e2b42319310aa245a776f74de10d899520122d7320 (from https://www.piwheels.org/simple/scilpy/) 2024-05-08T17:49:37,522 Skipping link: No binaries permitted for scilpy: https://www.piwheels.org/simple/scilpy/scilpy-0.2.dev0-cp39-cp39-linux_armv7l.whl#sha256=4d60471b8bc262bab66213e2b42319310aa245a776f74de10d899520122d7320 (from https://www.piwheels.org/simple/scilpy/) 2024-05-08T17:49:37,522 Skipping link: not a file: https://www.piwheels.org/simple/scilpy/ 2024-05-08T17:49:37,523 Skipping link: not a file: https://pypi.org/simple/scilpy/ 2024-05-08T17:49:37,539 Given no hashes to check 1 links for project 'scilpy': discarding no candidates 2024-05-08T17:49:37,555 Collecting scilpy==2.0.1 2024-05-08T17:49:37,557 Created temporary directory: /tmp/pip-unpack-5v1924_5 2024-05-08T17:49:37,685 Downloading scilpy-2.0.1.tar.gz (529 kB) 2024-05-08T17:49:38,982 Added scilpy==2.0.1 from https://files.pythonhosted.org/packages/11/f8/3a4d7f964350ba28d8f9f57bbea9509cc9d673323e1692e15cee5ea8f31e/scilpy-2.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-_g293hdc' 2024-05-08T17:49:38,984 Running setup.py (path:/tmp/pip-wheel-z52fbc0n/scilpy_a7a0939e4aa84084849e4424628b564b/setup.py) egg_info for package scilpy 2024-05-08T17:49:38,984 Created temporary directory: /tmp/pip-pip-egg-info-qkx_r72i 2024-05-08T17:49:38,985 Preparing metadata (setup.py): started 2024-05-08T17:49:38,986 Running command python setup.py egg_info 2024-05-08T17:49:39,934 /usr/local/lib/python3.9/dist-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-05-08T17:49:39,935 !! 2024-05-08T17:49:39,935 ******************************************************************************** 2024-05-08T17:49:39,935 Requirements should be satisfied by a PEP 517 installer. 2024-05-08T17:49:39,935 If you are using pip, you can try `pip install --use-pep517`. 2024-05-08T17:49:39,936 ******************************************************************************** 2024-05-08T17:49:39,936 !! 2024-05-08T17:49:39,936 dist.fetch_build_eggs(dist.setup_requires) 2024-05-08T17:49:40,175 running egg_info 2024-05-08T17:49:40,176 creating /tmp/pip-pip-egg-info-qkx_r72i/scilpy.egg-info 2024-05-08T17:49:40,209 writing /tmp/pip-pip-egg-info-qkx_r72i/scilpy.egg-info/PKG-INFO 2024-05-08T17:49:40,214 writing dependency_links to /tmp/pip-pip-egg-info-qkx_r72i/scilpy.egg-info/dependency_links.txt 2024-05-08T17:49:40,231 writing entry points to /tmp/pip-pip-egg-info-qkx_r72i/scilpy.egg-info/entry_points.txt 2024-05-08T17:49:40,235 writing requirements to /tmp/pip-pip-egg-info-qkx_r72i/scilpy.egg-info/requires.txt 2024-05-08T17:49:40,236 writing top-level names to /tmp/pip-pip-egg-info-qkx_r72i/scilpy.egg-info/top_level.txt 2024-05-08T17:49:40,238 writing manifest file '/tmp/pip-pip-egg-info-qkx_r72i/scilpy.egg-info/SOURCES.txt' 2024-05-08T17:49:40,431 reading manifest file '/tmp/pip-pip-egg-info-qkx_r72i/scilpy.egg-info/SOURCES.txt' 2024-05-08T17:49:40,433 reading manifest template 'MANIFEST.in' 2024-05-08T17:49:40,477 warning: no files found matching '*.c' under directory 'scilpy' 2024-05-08T17:49:40,518 warning: no files found matching '*.cpp' under directory 'scilpy' 2024-05-08T17:49:40,560 adding license file 'LICENSE' 2024-05-08T17:49:40,583 writing manifest file '/tmp/pip-pip-egg-info-qkx_r72i/scilpy.egg-info/SOURCES.txt' 2024-05-08T17:49:40,682 Preparing metadata (setup.py): finished with status 'done' 2024-05-08T17:49:40,688 Source in /tmp/pip-wheel-z52fbc0n/scilpy_a7a0939e4aa84084849e4424628b564b has version 2.0.1, which satisfies requirement scilpy==2.0.1 from https://files.pythonhosted.org/packages/11/f8/3a4d7f964350ba28d8f9f57bbea9509cc9d673323e1692e15cee5ea8f31e/scilpy-2.0.1.tar.gz 2024-05-08T17:49:40,689 Removed scilpy==2.0.1 from https://files.pythonhosted.org/packages/11/f8/3a4d7f964350ba28d8f9f57bbea9509cc9d673323e1692e15cee5ea8f31e/scilpy-2.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-_g293hdc' 2024-05-08T17:49:40,696 Created temporary directory: /tmp/pip-unpack-s80q4nnx 2024-05-08T17:49:40,697 Created temporary directory: /tmp/pip-unpack-v62bc2l_ 2024-05-08T17:49:40,754 Building wheels for collected packages: scilpy 2024-05-08T17:49:40,759 Created temporary directory: /tmp/pip-wheel-oxq2k9_8 2024-05-08T17:49:40,759 Building wheel for scilpy (setup.py): started 2024-05-08T17:49:40,760 Destination directory: /tmp/pip-wheel-oxq2k9_8 2024-05-08T17:49:40,760 Running command python setup.py bdist_wheel 2024-05-08T17:49:41,739 /usr/local/lib/python3.9/dist-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-05-08T17:49:41,739 !! 2024-05-08T17:49:41,739 ******************************************************************************** 2024-05-08T17:49:41,740 Requirements should be satisfied by a PEP 517 installer. 2024-05-08T17:49:41,740 If you are using pip, you can try `pip install --use-pep517`. 2024-05-08T17:49:41,740 ******************************************************************************** 2024-05-08T17:49:41,740 !! 2024-05-08T17:49:41,740 dist.fetch_build_eggs(dist.setup_requires) 2024-05-08T17:49:41,977 running bdist_wheel 2024-05-08T17:49:42,075 running build 2024-05-08T17:49:42,075 running build_py 2024-05-08T17:49:42,119 creating build 2024-05-08T17:49:42,120 creating build/lib.linux-armv7l-cpython-39 2024-05-08T17:49:42,120 creating build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,122 copying scripts/scil_dwi_powder_average.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,124 copying scripts/scil_bids_validate.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,126 copying scripts/scil_connectivity_normalize.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,128 copying scripts/scil_tractogram_segment_and_score.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,131 copying scripts/scil_tractogram_apply_transform.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,133 copying scripts/scil_viz_volume_scatterplot.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,135 copying scripts/scil_connectivity_compute_pca.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,138 copying scripts/scil_connectivity_compare_populations.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,140 copying scripts/scil_connectivity_filter.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,142 copying scripts/scil_tractogram_count_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,144 copying scripts/scil_tractogram_segment_one_bundle.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,146 copying scripts/scil_tractogram_assign_custom_color.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,148 copying scripts/scil_bundle_shape_measures.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,151 copying scripts/scil_viz_volume_screenshot.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,153 copying scripts/scil_labels_remove.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,154 copying scripts/scil_viz_tractogram_seeds.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,156 copying scripts/scil_frf_set_diffusivities.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,158 copying scripts/scil_frf_mean.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,160 copying scripts/scil_gradients_validate_correct_eddy.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,162 copying scripts/scil_dwi_prepare_topup_command.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,164 copying scripts/scil_surface_convert.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,165 copying scripts/scil_stats_group_comparison.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,167 copying scripts/scil_dwi_convert_FDF.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,169 copying scripts/scil_volume_remove_outliers_ransac.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,171 copying scripts/scil_viz_connectivity.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,173 copying scripts/scil_bundle_diameter.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,176 copying scripts/scil_tractogram_resample_nb_points.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,177 copying scripts/scil_gradients_validate_correct.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,179 copying scripts/scil_gradients_generate_sampling.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,181 copying scripts/scil_btensor_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,183 copying scripts/scil_viz_tractogram_seeds_3d.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,185 copying scripts/scil_bundle_score_many_bundles_one_tractogram.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,188 copying scripts/scil_freewater_priors.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,189 copying scripts/scil_lesions_info.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,191 copying scripts/scil_labels_combine.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,194 copying scripts/scil_dki_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,196 copying scripts/scil_connectivity_print_filenames.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,198 copying scripts/scil_tractogram_filter_by_anatomy.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,201 copying scripts/scil_volume_flip.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,203 copying scripts/scil_volume_resample.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,205 copying scripts/scil_dti_convert_tensors.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,206 copying scripts/scil_viz_bundle_screenshot_mni.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,209 copying scripts/scil_dwi_compute_snr.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,211 copying scripts/scil_bundle_filter_by_occurence.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,213 copying scripts/scil_viz_fodf.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,215 copying scripts/scil_connectivity_compute_matrices.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,218 copying scripts/scil_sh_convert.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,219 copying scripts/scil_fodf_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,222 copying scripts/scil_get_version.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,223 copying scripts/scil_volume_stats_in_ROI.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,226 copying scripts/scil_json_merge_entries.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,227 copying scripts/scil_tractogram_seed_density_map.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,229 copying scripts/scil_denoising_nlmeans.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,231 copying scripts/scil_bingham_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,233 copying scripts/scil_dwi_concatenate.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,235 copying scripts/scil_tractogram_convert_hdf5_to_trk.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,237 copying scripts/__init__.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,238 copying scripts/scil_viz_gradients_screenshot.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,240 copying scripts/scil_tractogram_shuffle.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,242 copying scripts/scil_bundle_mean_fixel_bingham_metric.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,244 copying scripts/scil_json_harmonize_entries.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,245 copying scripts/scil_NODDI_priors.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,247 copying scripts/scil_tractogram_uniformize_endpoints.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,249 copying scripts/scil_labels_dilate.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,251 copying scripts/scil_bundle_volume_per_label.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,253 copying scripts/scil_viz_bundle_screenshot_mosaic.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,255 copying scripts/scil_tracking_pft_maps_edit.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,257 copying scripts/scil_labels_split_volume_by_ids.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,258 copying scripts/scil_tractogram_print_info.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,260 copying scripts/scil_tractogram_commit.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,263 copying scripts/scil_tractogram_split.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,265 copying scripts/scil_tractogram_remove_invalid.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,267 copying scripts/scil_mti_adjust_B1_header.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,268 copying scripts/scil_viz_dti_screenshot.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,270 copying scripts/scil_tractogram_filter_by_length.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,272 copying scripts/scil_gradients_modify_axes.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,274 copying scripts/scil_fodf_msmt.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,276 copying scripts/scil_NODDI_maps.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,278 copying scripts/scil_tractogram_smooth.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,279 copying scripts/scil_bundle_label_map.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,282 copying scripts/scil_gradients_convert.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,283 copying scripts/scil_connectivity_reorder_rois.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,285 copying scripts/scil_volume_crop.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,287 copying scripts/scil_tractogram_fix_trk.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,290 copying scripts/scil_tractogram_dpp_math.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,292 copying scripts/scil_bundle_mean_fixel_afd.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,294 copying scripts/scil_tractogram_apply_transform_to_hdf5.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,295 copying scripts/scil_dwi_split_by_indices.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,297 copying scripts/scil_volume_b0_synthesis.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,299 copying scripts/scil_sh_to_sf.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,301 copying scripts/scil_tractogram_pairwise_comparison.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,303 copying scripts/scil_bundle_pairwise_comparison.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,306 copying scripts/scil_qball_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,307 copying scripts/scil_dwi_to_sh.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,309 copying scripts/scil_tractogram_flip.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,311 copying scripts/scil_tractogram_register.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,313 copying scripts/scil_sh_fusion.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,315 copying scripts/scil_tracking_local.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,317 copying scripts/scil_connectivity_hdf5_average_density_map.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,318 copying scripts/scil_tracking_local_dev.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,320 copying scripts/scil_volume_math.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,322 copying scripts/scil_volume_apply_transform.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,324 copying scripts/scil_bundle_generate_priors.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,326 copying scripts/scil_tractogram_filter_by_orientation.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,328 copying scripts/scil_dwi_apply_bias_field.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,330 copying scripts/scil_dti_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,332 copying scripts/scil_plot_stats_per_point.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,334 copying scripts/scil_tractogram_cut_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,336 copying scripts/scil_labels_split_volume_from_lut.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,338 copying scripts/scil_fodf_ssst.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,340 copying scripts/scil_connectivity_pairwise_agreement.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,342 copying scripts/scil_dwi_extract_shell.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,344 copying scripts/scil_dwi_detect_volume_outliers.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,345 copying scripts/scil_gradients_apply_transform.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,347 copying scripts/scil_bundle_mean_std.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,349 copying scripts/scil_search_keywords.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,351 copying scripts/scil_tractogram_extract_ushape.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,352 copying scripts/scil_surface_smooth.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,354 copying scripts/scil_connectivity_graph_measures.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,356 copying scripts/scil_tractogram_qbx.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,358 copying scripts/scil_gradients_round_bvals.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,359 copying scripts/scil_header_print_info.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,361 copying scripts/scil_tractogram_compute_density_map.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,363 copying scripts/scil_volume_stats_in_labels.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,364 copying scripts/scil_rgb_convert.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,366 copying scripts/scil_tractogram_compute_TODI.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,368 copying scripts/scil_bundle_mean_fixel_afd_from_hdf5.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,370 copying scripts/scil_sh_to_rish.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,371 copying scripts/scil_aodf_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,374 copying scripts/scil_connectivity_math.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,376 copying scripts/scil_header_validate_compatibility.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,377 copying scripts/scil_viz_volume_histogram.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,379 copying scripts/scil_fodf_max_in_ventricles.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,380 copying scripts/scil_bundle_compute_centroid.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,382 copying scripts/scil_tractogram_segment_bundles.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,384 copying scripts/scil_tracking_pft.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,386 copying scripts/scil_viz_bingham_fit.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,388 copying scripts/scil_bundle_score_same_bundle_many_segmentations.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,390 copying scripts/scil_dwi_prepare_eddy_command.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,393 copying scripts/scil_viz_bundle.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,395 copying scripts/scil_tractogram_detect_loops.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,397 copying scripts/scil_tractogram_math.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,399 copying scripts/scil_tractogram_filter_by_roi.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,401 copying scripts/scil_tracking_pft_maps.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,403 copying scripts/scil_surface_apply_transform.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,404 copying scripts/scil_viz_volume_screenshot_mosaic.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,406 copying scripts/scil_tractogram_convert.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,408 copying scripts/scil_bundle_reject_outliers.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,410 copying scripts/scil_tractogram_segment_bundles_for_connectivity.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,412 copying scripts/scil_tractogram_assign_uniform_color.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,414 copying scripts/scil_tractogram_project_streamlines_to_map.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,416 copying scripts/scil_json_convert_entries_to_xlsx.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,419 copying scripts/scil_dwi_reorder_philips.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,420 copying scripts/scil_tractogram_compress.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,422 copying scripts/scil_dwi_extract_b0.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,424 copying scripts/scil_bundle_clean_qbx_clusters.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,426 copying scripts/scil_frf_memsmt.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,429 copying scripts/scil_surface_flip.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,430 copying scripts/scil_fodf_to_bingham.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,432 copying scripts/scil_tractogram_project_map_to_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,434 copying scripts/scil_frf_ssst.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,437 copying scripts/scil_volume_reshape_to_reference.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,438 copying scripts/scil_frf_msmt.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,441 copying scripts/scil_tractogram_resample.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,443 copying scripts/scil_mti_maps_ihMT.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,445 copying scripts/scil_mti_maps_MT.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,447 copying scripts/scil_sh_to_aodf.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,450 copying scripts/scil_bundle_compute_endpoints_map.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,451 copying scripts/scil_volume_count_non_zero_voxels.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,453 copying scripts/scil_freewater_maps.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,455 copying scripts/scil_fodf_memsmt.py -> build/lib.linux-armv7l-cpython-39/scripts 2024-05-08T17:49:42,458 creating build/lib.linux-armv7l-cpython-39/scilpy 2024-05-08T17:49:42,459 copying scilpy/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy 2024-05-08T17:49:42,460 copying scilpy/version.py -> build/lib.linux-armv7l-cpython-39/scilpy 2024-05-08T17:49:42,469 creating build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,470 copying scripts/legacy/scil_normalize_connectivity.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,472 copying scripts/legacy/scil_remove_labels.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,473 copying scripts/legacy/scil_run_nlmeans.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,475 copying scripts/legacy/scil_compute_kurtosis_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,476 copying scripts/legacy/scil_snr_in_roi.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,478 copying scripts/legacy/scil_compute_streamlines_density_map.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,480 copying scripts/legacy/scil_split_volume_by_ids.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,481 copying scripts/legacy/scil_resample_volume.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,483 copying scripts/legacy/scil_count_non_zero_voxels.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,484 copying scripts/legacy/scil_split_image.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,486 copying scripts/legacy/scil_fix_dsi_studio_trk.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,487 copying scripts/legacy/scil_convert_gradients_mrtrix_to_fsl.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,489 copying scripts/legacy/scil_compute_endpoints_map.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,491 copying scripts/legacy/scil_compute_todi.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,492 copying scripts/legacy/scil_validate_and_correct_eddy_gradients.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,494 copying scripts/legacy/scil_resample_bvals.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,496 copying scripts/legacy/scil_compute_pft.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,497 copying scripts/legacy/scil_compute_qball_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,499 copying scripts/legacy/scil_extract_dwi_shell.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,500 copying scripts/legacy/scil_resample_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,502 copying scripts/legacy/scil_merge_json.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,503 copying scripts/legacy/scil_project_streamlines_to_map.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,505 copying scripts/legacy/scil_compute_local_tracking_dev.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,507 copying scripts/legacy/scil_compute_hdf5_average_density_map.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,508 copying scripts/legacy/scil_convert_sh_basis.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,510 copying scripts/legacy/scil_visualize_bundles.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,511 copying scripts/legacy/scil_compute_powder_average.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,513 copying scripts/legacy/scil_combine_labels.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,515 copying scripts/legacy/scil_reshape_to_reference.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,516 copying scripts/legacy/scil_group_comparison.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,518 copying scripts/legacy/scil_compute_ihMT_maps.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,519 copying scripts/legacy/scil_filter_tractogram.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,521 copying scripts/legacy/scil_convert_tensors.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,523 copying scripts/legacy/scil_harmonize_json.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,524 copying scripts/legacy/scil_compute_bundle_volume.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,526 copying scripts/legacy/scil_compress_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,527 copying scripts/legacy/__init__.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,528 copying scripts/legacy/scil_outlier_rejection.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,530 copying scripts/legacy/scil_screenshot_dti.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,531 copying scripts/legacy/scil_flip_surface.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,533 copying scripts/legacy/scil_remove_invalid_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,535 copying scripts/legacy/scil_compute_ssst_frf.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,536 copying scripts/legacy/scil_compute_dti_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,538 copying scripts/legacy/scil_image_math.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,539 copying scripts/legacy/scil_compute_connectivity.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,541 copying scripts/legacy/scil_apply_transform_to_image.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,542 copying scripts/legacy/scil_visualize_gradients.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,544 copying scripts/legacy/scil_compute_NODDI_priors.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,545 copying scripts/legacy/scil_compute_local_tracking.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,547 copying scripts/legacy/scil_estimate_bundles_diameter.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,549 copying scripts/legacy/scil_filter_streamlines_by_orientation.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,550 copying scripts/legacy/scil_visualize_fodf.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,552 copying scripts/legacy/scil_compute_bundle_voxel_label_map.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,553 copying scripts/legacy/scil_recognize_single_bundle.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,555 copying scripts/legacy/scil_prepare_topup_command.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,556 copying scripts/legacy/scil_dilate_labels.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,558 copying scripts/legacy/scil_assign_custom_color_to_tractogram.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,559 copying scripts/legacy/scil_compute_asym_odf_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,561 copying scripts/legacy/scil_compute_rish_from_sh.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,563 copying scripts/legacy/scil_compute_msmt_fodf.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,564 copying scripts/legacy/scil_flip_volume.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,566 copying scripts/legacy/scil_perform_majority_vote.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,568 copying scripts/legacy/scil_evaluate_bundles_binary_classification_measures.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,570 copying scripts/legacy/scil_extract_ushape.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,572 copying scripts/legacy/scil_prepare_eddy_command.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,574 copying scripts/legacy/scil_visualize_bundles_mosaic.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,576 copying scripts/legacy/scil_apply_transform_to_surface.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,578 copying scripts/legacy/scil_compute_sh_from_signal.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,580 copying scripts/legacy/scil_print_header.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,582 copying scripts/legacy/scil_visualize_connectivity.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,584 copying scripts/legacy/scil_run_commit.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,586 copying scripts/legacy/scil_detect_dwi_volume_outliers.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,588 copying scripts/legacy/scil_reorder_connectivity.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,590 copying scripts/legacy/scil_visualize_seeds_3d.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,592 copying scripts/legacy/scil_evaluate_connectivity_pairwise_agreement_measures.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,597 copying scripts/legacy/scil_compute_bundle_volume_per_label.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,600 copying scripts/legacy/scil_swap_gradient_axis.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,602 copying scripts/legacy/scil_detect_streamlines_loops.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,603 copying scripts/legacy/scil_fit_bingham_to_fodf.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,610 copying scripts/legacy/scil_flip_gradients.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,612 copying scripts/legacy/scil_apply_transform_to_tractogram.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,614 copying scripts/legacy/scil_streamlines_math.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,621 copying scripts/legacy/scil_compute_memsmt_frf.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,623 copying scripts/legacy/scil_merge_sh.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,625 copying scripts/legacy/scil_compute_mean_fixel_afd_from_hdf5.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,627 copying scripts/legacy/scil_evaluate_bundles_pairwise_agreement_measures.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,629 copying scripts/legacy/scil_generate_gradient_sampling.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,631 copying scripts/legacy/scil_compute_memsmt_fodf.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,633 copying scripts/legacy/scil_shuffle_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,635 copying scripts/legacy/scil_screenshot_volume.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,637 copying scripts/legacy/scil_recognize_multi_bundles.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,639 copying scripts/legacy/scil_screenshot_bundle.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,641 copying scripts/legacy/scil_compute_divide.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,643 copying scripts/legacy/scil_filter_streamlines_by_length.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,645 copying scripts/legacy/scil_generate_priors_from_bundle.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,647 copying scripts/legacy/scil_register_tractogram.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,649 copying scripts/legacy/scil_add_tracking_mask_to_pft_maps.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,651 copying scripts/legacy/scil_extract_b0.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,653 copying scripts/legacy/scil_compute_seed_density_map.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,655 copying scripts/legacy/scil_split_tractogram.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,658 copying scripts/legacy/scil_convert_gradients_fsl_to_mrtrix.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,660 copying scripts/legacy/scil_smooth_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,662 copying scripts/legacy/scil_filter_tractogram_anatomically.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,664 copying scripts/legacy/scil_uniformize_streamlines_endpoints.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,666 copying scripts/legacy/scil_compute_seed_by_labels.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,669 copying scripts/legacy/scil_analyse_lesions_load.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,671 copying scripts/legacy/scil_compute_metrics_stats_in_ROI.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,672 copying scripts/legacy/scil_compute_maps_for_particle_filter_tracking.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,674 copying scripts/legacy/scil_concatenate_dwi.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,676 copying scripts/legacy/scil_score_bundles.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,677 copying scripts/legacy/scil_split_volume_by_labels.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,679 copying scripts/legacy/scil_visualize_seeds.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,681 copying scripts/legacy/scil_compute_bundle_mean_std.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,683 copying scripts/legacy/scil_compute_bundle_mean_std_per_point.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,684 copying scripts/legacy/scil_evaluate_connectivity_graph_measures.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,686 copying scripts/legacy/scil_convert_fdf.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,688 copying scripts/legacy/scil_convert_tractogram.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,690 copying scripts/legacy/scil_plot_mean_std_per_point.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,691 copying scripts/legacy/scil_convert_rgb.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,693 copying scripts/legacy/scil_compute_freewater.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,695 copying scripts/legacy/scil_compute_streamlines_length_stats.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,696 copying scripts/legacy/scil_visualize_bingham_fit.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,698 copying scripts/legacy/scil_smooth_surface.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,700 copying scripts/legacy/scil_print_connectivity_filenames.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,702 copying scripts/legacy/scil_execute_asymmetric_filtering.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,704 copying scripts/legacy/scil_filter_connectivity.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,705 copying scripts/legacy/scil_count_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,707 copying scripts/legacy/scil_compute_msmt_frf.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,709 copying scripts/legacy/scil_cut_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,711 copying scripts/legacy/scil_validate_and_correct_bvecs.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,712 copying scripts/legacy/scil_reorder_dwi_philips.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,714 copying scripts/legacy/scil_apply_bias_field_on_dwi.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,716 copying scripts/legacy/scil_set_response_function.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,718 copying scripts/legacy/scil_clean_qbx_clusters.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,719 copying scripts/legacy/scil_compute_lobe_specific_fodf_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,721 copying scripts/legacy/scil_remove_outliers_ransac.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,723 copying scripts/legacy/scil_compute_sf_from_sh.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,725 copying scripts/legacy/scil_compute_mean_fixel_afd_from_bundles.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,726 copying scripts/legacy/scil_compute_ssst_fodf.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,728 copying scripts/legacy/scil_convert_json_to_xlsx.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,730 copying scripts/legacy/scil_flip_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,731 copying scripts/legacy/scil_compute_centroid.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,733 copying scripts/legacy/scil_crop_volume.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,735 copying scripts/legacy/scil_compute_fodf_max_in_ventricles.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,737 copying scripts/legacy/scil_screenshot_volume_mosaic_overlap.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,738 copying scripts/legacy/scil_validate_bids.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,740 copying scripts/legacy/scil_visualize_scatterplot.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,742 copying scripts/legacy/scil_assign_uniform_color_to_tractograms.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,744 copying scripts/legacy/scil_score_tractogram.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,745 copying scripts/legacy/scil_convert_surface.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,747 copying scripts/legacy/scil_execute_angle_aware_bilateral_filtering.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,749 copying scripts/legacy/scil_decompose_connectivity.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,750 copying scripts/legacy/scil_apply_transform_to_bvecs.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,752 copying scripts/legacy/scil_compare_connectivity.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,760 copying scripts/legacy/scil_compute_mean_frf.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,761 copying scripts/legacy/scil_resample_tractogram.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,763 copying scripts/legacy/scil_compute_MT_maps.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,765 copying scripts/legacy/scil_compute_qbx.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,766 copying scripts/legacy/scil_save_connections_from_hdf5.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,768 copying scripts/legacy/scil_visualize_histogram.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,770 copying scripts/legacy/scil_compute_pca.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,772 copying scripts/legacy/scil_compute_fodf_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,773 copying scripts/legacy/scil_compute_NODDI.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,775 copying scripts/legacy/scil_compute_mean_fixel_lobe_metric_from_bundles.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,777 copying scripts/legacy/scil_evaluate_bundles_individual_measures.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,778 copying scripts/legacy/scil_verify_space_attributes_compatibility.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,780 copying scripts/legacy/scil_apply_transform_to_hdf5.py -> build/lib.linux-armv7l-cpython-39/scripts/legacy 2024-05-08T17:49:42,789 creating build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,790 copying scripts/tests/test_bundle_mean_fixel_afd_from_hdf5.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,792 copying scripts/tests/test_volume_flip.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,794 copying scripts/tests/test_bingham_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,796 copying scripts/tests/test_tractogram_filter_by_length.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,797 copying scripts/tests/test_fodf_to_bingham.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,799 copying scripts/tests/test_tractogram_assign_uniform_color.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,801 copying scripts/tests/test_gradients_validate_correct_eddy.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,803 copying scripts/tests/test_tractogram_count_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,804 copying scripts/tests/test_volume_math.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,806 copying scripts/tests/test_volume_apply_transform.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,808 copying scripts/tests/test_connectivity_filter.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,810 copying scripts/tests/test_tractogram_compress.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,811 copying scripts/tests/test_dwi_split_by_indices.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,813 copying scripts/tests/test_sh_to_sf.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,815 copying scripts/tests/test_volume_count_non_zero_voxels.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,817 copying scripts/tests/test_NODDI_priors.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,819 copying scripts/tests/test_tractogram_fix_trk.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,820 copying scripts/tests/test_viz_bundle.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,822 copying scripts/tests/test_connectivity_compare_populations.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,824 copying scripts/tests/test_viz_dti_screenshot.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,826 copying scripts/tests/test_volume_remove_outliers_ransac.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,827 copying scripts/tests/test_dti_convert_tensors.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,830 copying scripts/tests/test_mti_adjust_B1_header.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,831 copying scripts/tests/test_gradients_round_bvals.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,833 copying scripts/tests/test_fodf_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,835 copying scripts/tests/test_json_convert_entries_to_xlsx.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,836 copying scripts/tests/test_header_validate_compatibility.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,838 copying scripts/tests/test_tractogram_uniformize_endpoints.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,840 copying scripts/tests/test_gradients_apply_transform.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,842 copying scripts/tests/test_bundle_mean_fixel_bingham_metric.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,844 copying scripts/tests/test_surface_smooth.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,850 copying scripts/tests/test_NODDI_maps.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,852 copying scripts/tests/test_connectivity_print_filenames.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,854 copying scripts/tests/test_labels_remove.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,856 copying scripts/tests/test_dwi_extract_b0.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,858 copying scripts/tests/test_volume_reshape_to_reference.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,860 copying scripts/tests/test_dwi_prepare_eddy_command.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,861 copying scripts/tests/test_viz_bundle_screenshot_mni.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,863 copying scripts/tests/test_gradients_modify_axes.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,865 copying scripts/tests/test_viz_volume_scatterplot.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,867 copying scripts/tests/test_surface_convert.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,868 copying scripts/tests/test_tractogram_detect_loops.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,870 copying scripts/tests/test_sh_convert.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,872 copying scripts/tests/test_viz_volume_screenshot.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,873 copying scripts/tests/test_bundle_mean_fixel_afd.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,875 copying scripts/tests/test_dwi_apply_bias_field.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,877 copying scripts/tests/test_volume_crop.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,878 copying scripts/tests/test_plot_stats_per_point.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,880 copying scripts/tests/test_tractogram_apply_transform.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,882 copying scripts/tests/test_tractogram_resample_nb_points.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,883 copying scripts/tests/test_mti_maps_MT.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,886 copying scripts/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,887 copying scripts/tests/test_tractogram_register.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,889 copying scripts/tests/test_tractogram_split.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,890 copying scripts/tests/test_viz_gradients_screenshot.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,892 copying scripts/tests/test_tractogram_remove_invalid.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,894 copying scripts/tests/test_bundle_label_map.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,896 copying scripts/tests/test_tractogram_apply_transform_to_hdf5.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,897 copying scripts/tests/test_dwi_compute_snr.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,899 copying scripts/tests/test_tracking_pft_maps_edit.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,901 copying scripts/tests/test_tractogram_resample.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,902 copying scripts/tests/test_freewater_maps.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,904 copying scripts/tests/test_dwi_reorder_philips.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,906 copying scripts/tests/test_tractogram_convert.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,908 copying scripts/tests/test_labels_split_volume_by_ids.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,911 copying scripts/tests/test_tractogram_commit.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,912 copying scripts/tests/test_labels_split_volume_from_lut.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,914 copying scripts/tests/test_viz_tractogram_seeds_3d.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,916 copying scripts/tests/test_sh_to_aodf.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,918 copying scripts/tests/test_tractogram_extract_ushape.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,920 copying scripts/tests/test_bundle_diameter.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,922 copying scripts/tests/test_dti_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,923 copying scripts/tests/test_tractogram_smooth.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,926 copying scripts/tests/test_btensor_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,928 copying scripts/tests/test_fodf_msmt.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,930 copying scripts/tests/test_dwi_extract_shell.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,931 copying scripts/tests/test_tractogram_cut_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,933 copying scripts/tests/test_connectivity_normalize.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,935 copying scripts/tests/test_fodf_ssst.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,937 copying scripts/tests/test_header_print_info.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,939 copying scripts/tests/test_dki_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,941 copying scripts/tests/test_surface_apply_transform.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,944 copying scripts/tests/test_lesions_info.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,946 copying scripts/tests/test_dwi_powder_average.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,948 copying scripts/tests/test_tractogram_segment_bundles.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,950 copying scripts/tests/test_gradients_convert.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,952 copying scripts/tests/test_viz_tractogram_seeds.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,953 copying scripts/tests/test_frf_mean.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,955 copying scripts/tests/test_json_harmonize_entries.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,957 copying scripts/tests/test_volume_stats_in_ROI.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,959 copying scripts/tests/test_bundle_shape_measures.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,960 copying scripts/tests/test_tractogram_compute_density_map.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,962 copying scripts/tests/test_connectivity_reorder_rois.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,964 copying scripts/tests/test_tractogram_pairwise_comparison.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,965 copying scripts/tests/test_bundle_compute_centroid.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,967 copying scripts/tests/test_fodf_memsmt.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,969 copying scripts/tests/test_tracking_pft.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,971 copying scripts/tests/test_dwi_prepare_topup_command.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,973 copying scripts/tests/test_tracking_pft_maps.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,974 copying scripts/tests/test_bundle_compute_endpoints_map.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,976 copying scripts/tests/test_frf_set_diffusivities.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,978 copying scripts/tests/test_stats_group_comparison.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,979 copying scripts/tests/test_connectivity_math.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,981 copying scripts/tests/test_sh_fusion.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,983 copying scripts/tests/test_tractogram_segment_and_score.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,984 copying scripts/tests/test_rgb_convert.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,986 copying scripts/tests/test_tracking_local_dev.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,988 copying scripts/tests/test_bundle_mean_std.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,990 copying scripts/tests/test_surface_flip.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,991 copying scripts/tests/test_bundle_score_same_bundle_many_segmentations.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,993 copying scripts/tests/test_tractogram_dpp_math.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,995 copying scripts/tests/test_fodf_max_in_ventricles.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,996 copying scripts/tests/test_frf_memsmt.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:42,999 copying scripts/tests/test_bundle_generate_priors.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,001 copying scripts/tests/test_tractogram_flip.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,002 copying scripts/tests/test_volume_resample.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,004 copying scripts/tests/test_denoising_nlmeans.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,006 copying scripts/tests/test_viz_bundle_screenshot_mosaic.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,008 copying scripts/tests/test_tractogram_segment_one_bundles.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,009 copying scripts/tests/test_frf_ssst.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,011 copying scripts/tests/test_bundle_volume_per_label.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,013 copying scripts/tests/test_freewater_priors.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,015 copying scripts/tests/test_gradients_validate_correct.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,017 copying scripts/tests/test_tractogram_filter_by_roi.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,020 copying scripts/tests/test_bundle_score_many_bundles_one_tractogram.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,022 copying scripts/tests/test_tractogram_assign_custom_color.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,024 copying scripts/tests/test_tractogram_project_streamlines_to_map.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,026 copying scripts/tests/test_bundle_pairwise_comparison.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,027 copying scripts/tests/test_connectivity_graph_measures.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,029 copying scripts/tests/test_viz_fodf.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,031 copying scripts/tests/test_connectivity_compute_pca.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,033 copying scripts/tests/test_sh_to_rish.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,034 copying scripts/tests/test_viz_bingham_fit.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,036 copying scripts/tests/test_tractogram_project_map_to_streamlines.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,038 copying scripts/tests/test_tractogram_qbx.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,040 copying scripts/tests/test_volume_stats_in_labels.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,042 copying scripts/tests/test_tractogram_seed_density_map.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,043 copying scripts/tests/test_tractogram_filter_by_orientation.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,045 copying scripts/tests/test_connectivity_compute_matrices.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,047 copying scripts/tests/test_bids_validate.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,050 copying scripts/tests/test_dwi_detect_volume_outliers.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,051 copying scripts/tests/test_labels_dilate.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,053 copying scripts/tests/test_tractogram_math.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,055 copying scripts/tests/test_gradients_generate_sampling.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,057 copying scripts/tests/test_dwi_concatenate.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,059 copying scripts/tests/test_tractogram_print_info.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,061 copying scripts/tests/test_tractogram_filter_by_anatomy.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,063 copying scripts/tests/test_tractogram_shuffle.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,064 copying scripts/tests/test_dwi_convert_FDF.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,066 copying scripts/tests/test_frf_msmt.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,068 copying scripts/tests/test_volume_b0_synthesis.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,070 copying scripts/tests/test_aodf_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,072 copying scripts/tests/test_connectivity_pairwise_agreement.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,073 copying scripts/tests/test_viz_volume_screenshot_mosaic.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,075 copying scripts/tests/test_bundle_reject_outliers.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,077 copying scripts/tests/test_tractogram_compute_TODI.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,079 copying scripts/tests/test_bundle_clean_qbx_clusters.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,080 copying scripts/tests/test_qball_metrics.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,082 copying scripts/tests/test_connectivity_hdf5_average_density_map.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,084 copying scripts/tests/test_viz_volume_histogram.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,086 copying scripts/tests/test_viz_connectivity.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,087 copying scripts/tests/test_json_merge_entries.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,089 copying scripts/tests/test_tractogram_convert_hdf5_to_trk.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,091 copying scripts/tests/test_labels_combine.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,093 copying scripts/tests/test_tractogram_segment_bundles_for_connectivity.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,095 copying scripts/tests/test_bundle_filter_by_occurence.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,096 copying scripts/tests/test_search_keywords.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,098 copying scripts/tests/test_mti_maps_ihMT.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,101 copying scripts/tests/test_tracking_local.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,103 copying scripts/tests/test_dwi_to_sh.py -> build/lib.linux-armv7l-cpython-39/scripts/tests 2024-05-08T17:49:43,106 creating build/lib.linux-armv7l-cpython-39/scilpy/gradients 2024-05-08T17:49:43,107 copying scilpy/gradients/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/gradients 2024-05-08T17:49:43,108 copying scilpy/gradients/utils.py -> build/lib.linux-armv7l-cpython-39/scilpy/gradients 2024-05-08T17:49:43,110 copying scilpy/gradients/optimize_gradient_sampling.py -> build/lib.linux-armv7l-cpython-39/scilpy/gradients 2024-05-08T17:49:43,112 copying scilpy/gradients/bvec_bval_tools.py -> build/lib.linux-armv7l-cpython-39/scilpy/gradients 2024-05-08T17:49:43,115 copying scilpy/gradients/gen_gradient_sampling.py -> build/lib.linux-armv7l-cpython-39/scilpy/gradients 2024-05-08T17:49:43,118 creating build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,119 copying scilpy/tractanalysis/reproducibility_measures.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,121 copying scilpy/tractanalysis/distance_to_centroid.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,123 copying scilpy/tractanalysis/afd_along_streamlines.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,125 copying scilpy/tractanalysis/todi_util.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,127 copying scilpy/tractanalysis/todi.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,130 copying scilpy/tractanalysis/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,131 copying scilpy/tractanalysis/bundle_operations.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,133 copying scilpy/tractanalysis/tools.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,135 copying scilpy/tractanalysis/json_utils.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,137 copying scilpy/tractanalysis/scoring.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,139 copying scilpy/tractanalysis/bingham_metric_along_streamlines.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,142 creating build/lib.linux-armv7l-cpython-39/scilpy/connectivity 2024-05-08T17:49:43,143 copying scilpy/connectivity/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/connectivity 2024-05-08T17:49:43,144 copying scilpy/connectivity/connectivity_tools.py -> build/lib.linux-armv7l-cpython-39/scilpy/connectivity 2024-05-08T17:49:43,147 creating build/lib.linux-armv7l-cpython-39/scilpy/dwi 2024-05-08T17:49:43,148 copying scilpy/dwi/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/dwi 2024-05-08T17:49:43,149 copying scilpy/dwi/utils.py -> build/lib.linux-armv7l-cpython-39/scilpy/dwi 2024-05-08T17:49:43,151 copying scilpy/dwi/operations.py -> build/lib.linux-armv7l-cpython-39/scilpy/dwi 2024-05-08T17:49:43,154 creating build/lib.linux-armv7l-cpython-39/scilpy/gpuparallel 2024-05-08T17:49:43,155 copying scilpy/gpuparallel/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/gpuparallel 2024-05-08T17:49:43,157 copying scilpy/gpuparallel/opencl_utils.py -> build/lib.linux-armv7l-cpython-39/scilpy/gpuparallel 2024-05-08T17:49:43,159 creating build/lib.linux-armv7l-cpython-39/scilpy/preprocessing 2024-05-08T17:49:43,160 copying scilpy/preprocessing/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/preprocessing 2024-05-08T17:49:43,162 copying scilpy/preprocessing/distortion_correction.py -> build/lib.linux-armv7l-cpython-39/scilpy/preprocessing 2024-05-08T17:49:43,165 creating build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,165 copying scilpy/io/image.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,168 copying scilpy/io/mti.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,170 copying scilpy/io/dvc.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,172 copying scilpy/io/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,173 copying scilpy/io/utils.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,176 copying scilpy/io/hdf5.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,178 copying scilpy/io/streamlines.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,181 copying scilpy/io/gradients.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,182 copying scilpy/io/tensor.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,184 copying scilpy/io/deprecator.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,186 copying scilpy/io/varian_fdf.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,189 copying scilpy/io/fetcher.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,191 copying scilpy/io/btensor.py -> build/lib.linux-armv7l-cpython-39/scilpy/io 2024-05-08T17:49:43,194 creating build/lib.linux-armv7l-cpython-39/scilpy/reconst 2024-05-08T17:49:43,195 copying scilpy/reconst/sh.py -> build/lib.linux-armv7l-cpython-39/scilpy/reconst 2024-05-08T17:49:43,198 copying scilpy/reconst/divide.py -> build/lib.linux-armv7l-cpython-39/scilpy/reconst 2024-05-08T17:49:43,200 copying scilpy/reconst/mti.py -> build/lib.linux-armv7l-cpython-39/scilpy/reconst 2024-05-08T17:49:43,202 copying scilpy/reconst/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/reconst 2024-05-08T17:49:43,203 copying scilpy/reconst/bingham.py -> build/lib.linux-armv7l-cpython-39/scilpy/reconst 2024-05-08T17:49:43,206 copying scilpy/reconst/utils.py -> build/lib.linux-armv7l-cpython-39/scilpy/reconst 2024-05-08T17:49:43,208 copying scilpy/reconst/frf.py -> build/lib.linux-armv7l-cpython-39/scilpy/reconst 2024-05-08T17:49:43,210 copying scilpy/reconst/fiber_coherence.py -> build/lib.linux-armv7l-cpython-39/scilpy/reconst 2024-05-08T17:49:43,211 copying scilpy/reconst/fodf.py -> build/lib.linux-armv7l-cpython-39/scilpy/reconst 2024-05-08T17:49:43,214 copying scilpy/reconst/aodf.py -> build/lib.linux-armv7l-cpython-39/scilpy/reconst 2024-05-08T17:49:43,216 creating build/lib.linux-armv7l-cpython-39/scilpy/segment 2024-05-08T17:49:43,217 copying scilpy/segment/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/segment 2024-05-08T17:49:43,218 copying scilpy/segment/streamlines.py -> build/lib.linux-armv7l-cpython-39/scilpy/segment 2024-05-08T17:49:43,220 copying scilpy/segment/tractogram_from_roi.py -> build/lib.linux-armv7l-cpython-39/scilpy/segment 2024-05-08T17:49:43,223 copying scilpy/segment/recobundlesx.py -> build/lib.linux-armv7l-cpython-39/scilpy/segment 2024-05-08T17:49:43,225 copying scilpy/segment/models.py -> build/lib.linux-armv7l-cpython-39/scilpy/segment 2024-05-08T17:49:43,227 copying scilpy/segment/voting_scheme.py -> build/lib.linux-armv7l-cpython-39/scilpy/segment 2024-05-08T17:49:43,230 creating build/lib.linux-armv7l-cpython-39/scilpy/utils 2024-05-08T17:49:43,231 copying scilpy/utils/filenames.py -> build/lib.linux-armv7l-cpython-39/scilpy/utils 2024-05-08T17:49:43,232 copying scilpy/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/utils 2024-05-08T17:49:43,234 copying scilpy/utils/metrics_tools.py -> build/lib.linux-armv7l-cpython-39/scilpy/utils 2024-05-08T17:49:43,237 copying scilpy/utils/spatial.py -> build/lib.linux-armv7l-cpython-39/scilpy/utils 2024-05-08T17:49:43,239 creating build/lib.linux-armv7l-cpython-39/scilpy/tractograms 2024-05-08T17:49:43,240 copying scilpy/tractograms/streamline_operations.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractograms 2024-05-08T17:49:43,243 copying scilpy/tractograms/dps_and_dpp_management.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractograms 2024-05-08T17:49:43,246 copying scilpy/tractograms/streamline_and_mask_operations.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractograms 2024-05-08T17:49:43,248 copying scilpy/tractograms/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractograms 2024-05-08T17:49:43,249 copying scilpy/tractograms/lazy_tractogram_operations.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractograms 2024-05-08T17:49:43,251 copying scilpy/tractograms/tractogram_operations.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractograms 2024-05-08T17:49:43,254 creating build/lib.linux-armv7l-cpython-39/scilpy/viz 2024-05-08T17:49:43,255 copying scilpy/viz/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/viz 2024-05-08T17:49:43,257 copying scilpy/viz/slice.py -> build/lib.linux-armv7l-cpython-39/scilpy/viz 2024-05-08T17:49:43,259 copying scilpy/viz/utils.py -> build/lib.linux-armv7l-cpython-39/scilpy/viz 2024-05-08T17:49:43,261 copying scilpy/viz/gradients.py -> build/lib.linux-armv7l-cpython-39/scilpy/viz 2024-05-08T17:49:43,263 copying scilpy/viz/color.py -> build/lib.linux-armv7l-cpython-39/scilpy/viz 2024-05-08T17:49:43,265 copying scilpy/viz/screenshot.py -> build/lib.linux-armv7l-cpython-39/scilpy/viz 2024-05-08T17:49:43,267 creating build/lib.linux-armv7l-cpython-39/scilpy/stats 2024-05-08T17:49:43,268 copying scilpy/stats/stats.py -> build/lib.linux-armv7l-cpython-39/scilpy/stats 2024-05-08T17:49:43,271 copying scilpy/stats/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/stats 2024-05-08T17:49:43,272 copying scilpy/stats/utils.py -> build/lib.linux-armv7l-cpython-39/scilpy/stats 2024-05-08T17:49:43,275 copying scilpy/stats/matrix_stats.py -> build/lib.linux-armv7l-cpython-39/scilpy/stats 2024-05-08T17:49:43,278 creating build/lib.linux-armv7l-cpython-39/scilpy/tracking 2024-05-08T17:49:43,279 copying scilpy/tracking/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/tracking 2024-05-08T17:49:43,280 copying scilpy/tracking/tracker.py -> build/lib.linux-armv7l-cpython-39/scilpy/tracking 2024-05-08T17:49:43,283 copying scilpy/tracking/propagator.py -> build/lib.linux-armv7l-cpython-39/scilpy/tracking 2024-05-08T17:49:43,285 copying scilpy/tracking/utils.py -> build/lib.linux-armv7l-cpython-39/scilpy/tracking 2024-05-08T17:49:43,288 copying scilpy/tracking/seed.py -> build/lib.linux-armv7l-cpython-39/scilpy/tracking 2024-05-08T17:49:43,291 creating build/lib.linux-armv7l-cpython-39/scilpy/image 2024-05-08T17:49:43,292 copying scilpy/image/reslice.py -> build/lib.linux-armv7l-cpython-39/scilpy/image 2024-05-08T17:49:43,294 copying scilpy/image/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/image 2024-05-08T17:49:43,295 copying scilpy/image/utils.py -> build/lib.linux-armv7l-cpython-39/scilpy/image 2024-05-08T17:49:43,298 copying scilpy/image/volume_operations.py -> build/lib.linux-armv7l-cpython-39/scilpy/image 2024-05-08T17:49:43,300 copying scilpy/image/labels.py -> build/lib.linux-armv7l-cpython-39/scilpy/image 2024-05-08T17:49:43,302 copying scilpy/image/volume_b0_synthesis.py -> build/lib.linux-armv7l-cpython-39/scilpy/image 2024-05-08T17:49:43,304 copying scilpy/image/volume_space_management.py -> build/lib.linux-armv7l-cpython-39/scilpy/image 2024-05-08T17:49:43,306 copying scilpy/image/volume_math.py -> build/lib.linux-armv7l-cpython-39/scilpy/image 2024-05-08T17:49:43,309 creating build/lib.linux-armv7l-cpython-39/scilpy/denoise 2024-05-08T17:49:43,310 copying scilpy/denoise/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/denoise 2024-05-08T17:49:43,312 copying scilpy/denoise/asym_filtering.py -> build/lib.linux-armv7l-cpython-39/scilpy/denoise 2024-05-08T17:49:43,315 creating build/lib.linux-armv7l-cpython-39/scilpy/dwi/tests 2024-05-08T17:49:43,316 copying scilpy/dwi/tests/test_utils.py -> build/lib.linux-armv7l-cpython-39/scilpy/dwi/tests 2024-05-08T17:49:43,318 copying scilpy/dwi/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/dwi/tests 2024-05-08T17:49:43,319 copying scilpy/dwi/tests/test_operations.py -> build/lib.linux-armv7l-cpython-39/scilpy/dwi/tests 2024-05-08T17:49:43,321 creating build/lib.linux-armv7l-cpython-39/scilpy/tractograms/tests 2024-05-08T17:49:43,322 copying scilpy/tractograms/tests/test_streamline_and_mask_operations.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractograms/tests 2024-05-08T17:49:43,324 copying scilpy/tractograms/tests/test_tractogram_operations.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractograms/tests 2024-05-08T17:49:43,327 copying scilpy/tractograms/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractograms/tests 2024-05-08T17:49:43,328 copying scilpy/tractograms/tests/test_streamline_operations.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractograms/tests 2024-05-08T17:49:43,330 copying scilpy/tractograms/tests/test_dps_and_dpp_management.py -> build/lib.linux-armv7l-cpython-39/scilpy/tractograms/tests 2024-05-08T17:49:43,333 creating build/lib.linux-armv7l-cpython-39/scilpy/viz/backends 2024-05-08T17:49:43,334 copying scilpy/viz/backends/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/viz/backends 2024-05-08T17:49:43,335 copying scilpy/viz/backends/fury.py -> build/lib.linux-armv7l-cpython-39/scilpy/viz/backends 2024-05-08T17:49:43,338 copying scilpy/viz/backends/pil.py -> build/lib.linux-armv7l-cpython-39/scilpy/viz/backends 2024-05-08T17:49:43,340 copying scilpy/viz/backends/vtk.py -> build/lib.linux-armv7l-cpython-39/scilpy/viz/backends 2024-05-08T17:49:43,343 creating build/lib.linux-armv7l-cpython-39/scilpy/viz/legacy 2024-05-08T17:49:43,344 copying scilpy/viz/legacy/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/viz/legacy 2024-05-08T17:49:43,346 copying scilpy/viz/legacy/chord_chart.py -> build/lib.linux-armv7l-cpython-39/scilpy/viz/legacy 2024-05-08T17:49:43,349 creating build/lib.linux-armv7l-cpython-39/scilpy/image/tests 2024-05-08T17:49:43,350 copying scilpy/image/tests/test_volume_math.py -> build/lib.linux-armv7l-cpython-39/scilpy/image/tests 2024-05-08T17:49:43,352 copying scilpy/image/tests/test_volume_operations.py -> build/lib.linux-armv7l-cpython-39/scilpy/image/tests 2024-05-08T17:49:43,355 copying scilpy/image/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/scilpy/image/tests 2024-05-08T17:49:43,356 copying scilpy/image/tests/test_labels.py -> build/lib.linux-armv7l-cpython-39/scilpy/image/tests 2024-05-08T17:49:43,358 running egg_info 2024-05-08T17:49:43,425 writing scilpy.egg-info/PKG-INFO 2024-05-08T17:49:43,430 writing dependency_links to scilpy.egg-info/dependency_links.txt 2024-05-08T17:49:43,448 writing entry points to scilpy.egg-info/entry_points.txt 2024-05-08T17:49:43,451 writing requirements to scilpy.egg-info/requires.txt 2024-05-08T17:49:43,453 writing top-level names to scilpy.egg-info/top_level.txt 2024-05-08T17:49:43,541 reading manifest file 'scilpy.egg-info/SOURCES.txt' 2024-05-08T17:49:43,557 reading manifest template 'MANIFEST.in' 2024-05-08T17:49:43,603 warning: no files found matching '*.c' under directory 'scilpy' 2024-05-08T17:49:43,646 warning: no files found matching '*.cpp' under directory 'scilpy' 2024-05-08T17:49:43,690 adding license file 'LICENSE' 2024-05-08T17:49:43,722 writing manifest file 'scilpy.egg-info/SOURCES.txt' 2024-05-08T17:49:43,746 copying scilpy/tractanalysis/grid_intersections.pyx -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,749 copying scilpy/tractanalysis/quick_tools.pyx -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,751 copying scilpy/tractanalysis/streamlines_metrics.pyx -> build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:49:43,753 copying scilpy/tractograms/uncompress.pyx -> build/lib.linux-armv7l-cpython-39/scilpy/tractograms 2024-05-08T17:49:43,792 running build_ext 2024-05-08T17:49:44,997 Compiling scilpy/tractograms/uncompress.pyx because it changed. 2024-05-08T17:49:44,997 Compiling scilpy/tractanalysis/quick_tools.pyx because it changed. 2024-05-08T17:49:44,997 Compiling scilpy/tractanalysis/grid_intersections.pyx because it changed. 2024-05-08T17:49:44,997 Compiling scilpy/tractanalysis/streamlines_metrics.pyx because it changed. 2024-05-08T17:49:44,998 [1/4] Cythonizing scilpy/tractanalysis/grid_intersections.pyx 2024-05-08T17:49:45,810 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-z52fbc0n/scilpy_a7a0939e4aa84084849e4424628b564b/scilpy/tractanalysis/grid_intersections.pyx 2024-05-08T17:49:45,811 tree = Parsing.p_module(s, pxd, full_module_name) 2024-05-08T17:49:46,569 performance hint: scilpy/tractanalysis/grid_intersections.pyx:89:5: Exception check on 'c_get_closest_edge' will always require the GIL to be acquired. 2024-05-08T17:49:46,570 Possible solutions: 2024-05-08T17:49:46,570 1. Declare 'c_get_closest_edge' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:46,570 2. Use an 'int' return type on 'c_get_closest_edge' to allow an error code to be returned. 2024-05-08T17:49:46,570 performance hint: scilpy/tractanalysis/grid_intersections.pyx:100:5: Exception check on 'copypoint_f' will always require the GIL to be acquired. 2024-05-08T17:49:46,570 Possible solutions: 2024-05-08T17:49:46,570 1. Declare 'copypoint_f' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:46,571 2. Use an 'int' return type on 'copypoint_f' to allow an error code to be returned. 2024-05-08T17:49:46,571 performance hint: scilpy/tractanalysis/grid_intersections.pyx:107:5: Exception check on 'copypoint_d' will always require the GIL to be acquired. 2024-05-08T17:49:46,571 Possible solutions: 2024-05-08T17:49:46,571 1. Declare 'copypoint_d' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:46,571 2. Use an 'int' return type on 'copypoint_d' to allow an error code to be returned. 2024-05-08T17:49:46,571 performance hint: scilpy/tractanalysis/grid_intersections.pyx:114:5: Exception check on 'copypoint_f2d' will always require the GIL to be acquired. 2024-05-08T17:49:46,571 Possible solutions: 2024-05-08T17:49:46,572 1. Declare 'copypoint_f2d' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:46,572 2. Use an 'int' return type on 'copypoint_f2d' to allow an error code to be returned. 2024-05-08T17:49:46,572 performance hint: scilpy/tractanalysis/grid_intersections.pyx:121:5: Exception check on 'copypoint_d2f' will always require the GIL to be acquired. 2024-05-08T17:49:46,572 Possible solutions: 2024-05-08T17:49:46,572 1. Declare 'copypoint_d2f' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:46,572 2. Use an 'int' return type on 'copypoint_d2f' to allow an error code to be returned. 2024-05-08T17:49:47,122 warning: scilpy/tractanalysis/grid_intersections.pyx:270:61: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2024-05-08T17:49:47,123 warning: scilpy/tractanalysis/grid_intersections.pyx:271:61: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2024-05-08T17:49:47,123 warning: scilpy/tractanalysis/grid_intersections.pyx:272:61: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2024-05-08T17:49:47,126 warning: scilpy/tractanalysis/grid_intersections.pyx:297:38: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2024-05-08T17:49:47,126 warning: scilpy/tractanalysis/grid_intersections.pyx:297:65: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2024-05-08T17:49:48,466 performance hint: scilpy/tractanalysis/grid_intersections.pyx:162:19: Exception check after calling 'copypoint_f' will always require the GIL to be acquired. 2024-05-08T17:49:48,467 Possible solutions: 2024-05-08T17:49:48,467 1. Declare 'copypoint_f' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:48,467 2. Use an 'int' return type on 'copypoint_f' to allow an error code to be returned. 2024-05-08T17:49:48,468 performance hint: scilpy/tractanalysis/grid_intersections.pyx:179:27: Exception check after calling 'copypoint_d' will always require the GIL to be acquired. 2024-05-08T17:49:48,469 Possible solutions: 2024-05-08T17:49:48,469 1. Declare 'copypoint_d' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:48,469 2. Use an 'int' return type on 'copypoint_d' to allow an error code to be returned. 2024-05-08T17:49:48,469 performance hint: scilpy/tractanalysis/grid_intersections.pyx:180:27: Exception check after calling 'copypoint_d' will always require the GIL to be acquired. 2024-05-08T17:49:48,469 Possible solutions: 2024-05-08T17:49:48,469 1. Declare 'copypoint_d' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:48,469 2. Use an 'int' return type on 'copypoint_d' to allow an error code to be returned. 2024-05-08T17:49:48,470 performance hint: scilpy/tractanalysis/grid_intersections.pyx:185:29: Exception check after calling 'copypoint_f2d' will always require the GIL to be acquired. 2024-05-08T17:49:48,470 Possible solutions: 2024-05-08T17:49:48,470 1. Declare 'copypoint_f2d' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:48,470 2. Use an 'int' return type on 'copypoint_f2d' to allow an error code to be returned. 2024-05-08T17:49:48,470 performance hint: scilpy/tractanalysis/grid_intersections.pyx:186:27: Exception check after calling 'copypoint_d' will always require the GIL to be acquired. 2024-05-08T17:49:48,470 Possible solutions: 2024-05-08T17:49:48,470 1. Declare 'copypoint_d' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:48,470 2. Use an 'int' return type on 'copypoint_d' to allow an error code to be returned. 2024-05-08T17:49:48,471 performance hint: scilpy/tractanalysis/grid_intersections.pyx:190:25: Exception check after calling 'copypoint_f2d' will always require the GIL to be acquired. 2024-05-08T17:49:48,471 Possible solutions: 2024-05-08T17:49:48,471 1. Declare 'copypoint_f2d' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:48,471 2. Use an 'int' return type on 'copypoint_f2d' to allow an error code to be returned. 2024-05-08T17:49:48,475 performance hint: scilpy/tractanalysis/grid_intersections.pyx:217:27: Exception check after calling 'copypoint_d' will always require the GIL to be acquired. 2024-05-08T17:49:48,475 Possible solutions: 2024-05-08T17:49:48,475 1. Declare 'copypoint_d' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:48,475 2. Use an 'int' return type on 'copypoint_d' to allow an error code to be returned. 2024-05-08T17:49:48,476 performance hint: scilpy/tractanalysis/grid_intersections.pyx:235:34: Exception check after calling 'c_get_closest_edge' will always require the GIL to be acquired. 2024-05-08T17:49:48,476 Possible solutions: 2024-05-08T17:49:48,476 1. Declare 'c_get_closest_edge' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:48,477 2. Use an 'int' return type on 'c_get_closest_edge' to allow an error code to be returned. 2024-05-08T17:49:48,478 performance hint: scilpy/tractanalysis/grid_intersections.pyx:254:33: Exception check after calling 'copypoint_d2f' will always require the GIL to be acquired. 2024-05-08T17:49:48,478 Possible solutions: 2024-05-08T17:49:48,478 1. Declare 'copypoint_d2f' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:48,478 2. Use an 'int' return type on 'copypoint_d2f' to allow an error code to be returned. 2024-05-08T17:49:48,481 performance hint: scilpy/tractanalysis/grid_intersections.pyx:273:33: Exception check after calling 'copypoint_d2f' will always require the GIL to be acquired. 2024-05-08T17:49:48,481 Possible solutions: 2024-05-08T17:49:48,481 1. Declare 'copypoint_d2f' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:48,481 2. Use an 'int' return type on 'copypoint_d2f' to allow an error code to be returned. 2024-05-08T17:49:48,675 [2/4] Cythonizing scilpy/tractanalysis/quick_tools.pyx 2024-05-08T17:49:48,689 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-z52fbc0n/scilpy_a7a0939e4aa84084849e4424628b564b/scilpy/tractanalysis/quick_tools.pyx 2024-05-08T17:49:48,689 tree = Parsing.p_module(s, pxd, full_module_name) 2024-05-08T17:49:50,985 [3/4] Cythonizing scilpy/tractanalysis/streamlines_metrics.pyx 2024-05-08T17:49:51,003 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-z52fbc0n/scilpy_a7a0939e4aa84084849e4424628b564b/scilpy/tractanalysis/streamlines_metrics.pyx 2024-05-08T17:49:51,003 tree = Parsing.p_module(s, pxd, full_module_name) 2024-05-08T17:49:52,240 performance hint: scilpy/tractanalysis/streamlines_metrics.pyx:26:5: Exception check on 'c_get_closest_edge' will always require the GIL to be acquired. 2024-05-08T17:49:52,240 Possible solutions: 2024-05-08T17:49:52,240 1. Declare 'c_get_closest_edge' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:52,240 2. Use an 'int' return type on 'c_get_closest_edge' to allow an error code to be returned. 2024-05-08T17:49:53,821 [4/4] Cythonizing scilpy/tractograms/uncompress.pyx 2024-05-08T17:49:54,469 performance hint: scilpy/tractograms/uncompress.pyx:141:5: Exception check on 'c_get_closest_edge' will always require the GIL to be acquired. 2024-05-08T17:49:54,469 Possible solutions: 2024-05-08T17:49:54,470 1. Declare 'c_get_closest_edge' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:54,470 2. Use an 'int' return type on 'c_get_closest_edge' to allow an error code to be returned. 2024-05-08T17:49:55,206 warning: scilpy/tractograms/uncompress.pyx:192:47: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2024-05-08T17:49:55,206 warning: scilpy/tractograms/uncompress.pyx:192:74: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2024-05-08T17:49:55,226 warning: scilpy/tractograms/uncompress.pyx:357:38: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2024-05-08T17:49:55,226 warning: scilpy/tractograms/uncompress.pyx:357:65: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2024-05-08T17:49:55,227 warning: scilpy/tractograms/uncompress.pyx:359:42: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2024-05-08T17:49:55,227 warning: scilpy/tractograms/uncompress.pyx:359:73: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2024-05-08T17:49:56,414 performance hint: scilpy/tractograms/uncompress.pyx:282:34: Exception check after calling 'c_get_closest_edge' will always require the GIL to be acquired. 2024-05-08T17:49:56,414 Possible solutions: 2024-05-08T17:49:56,414 1. Declare 'c_get_closest_edge' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2024-05-08T17:49:56,414 2. Use an 'int' return type on 'c_get_closest_edge' to allow an error code to be returned. 2024-05-08T17:49:56,555 building 'scilpy.tractograms.uncompress' extension 2024-05-08T17:49:56,556 creating build/temp.linux-armv7l-cpython-39 2024-05-08T17:49:56,556 creating build/temp.linux-armv7l-cpython-39/scilpy 2024-05-08T17:49:56,557 creating build/temp.linux-armv7l-cpython-39/scilpy/tractograms 2024-05-08T17:49:56,558 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c scilpy/tractograms/uncompress.c -o build/temp.linux-armv7l-cpython-39/scilpy/tractograms/uncompress.o 2024-05-08T17:49:57,009 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-05-08T17:49:57,009 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-05-08T17:49:57,010 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-05-08T17:49:57,010 from scilpy/tractograms/uncompress.c:1241: 2024-05-08T17:49:57,010 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-05-08T17:49:57,010 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-05-08T17:49:57,010 | ^~~~~~~ 2024-05-08T17:50:18,380 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/scilpy/tractograms/uncompress.o -L/usr/lib -L/usr/lib -o build/lib.linux-armv7l-cpython-39/scilpy/tractograms/uncompress.cpython-39-arm-linux-gnueabihf.so 2024-05-08T17:50:18,552 building 'scilpy.tractanalysis.quick_tools' extension 2024-05-08T17:50:18,552 creating build/temp.linux-armv7l-cpython-39/scilpy/tractanalysis 2024-05-08T17:50:18,553 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c scilpy/tractanalysis/quick_tools.c -o build/temp.linux-armv7l-cpython-39/scilpy/tractanalysis/quick_tools.o 2024-05-08T17:50:18,928 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-05-08T17:50:18,928 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-05-08T17:50:18,928 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-05-08T17:50:18,928 from scilpy/tractanalysis/quick_tools.c:1240: 2024-05-08T17:50:18,929 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-05-08T17:50:18,929 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-05-08T17:50:18,929 | ^~~~~~~ 2024-05-08T17:50:37,012 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/scilpy/tractanalysis/quick_tools.o -L/usr/lib -L/usr/lib -o build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/quick_tools.cpython-39-arm-linux-gnueabihf.so 2024-05-08T17:50:37,167 building 'scilpy.tractanalysis.grid_intersections' extension 2024-05-08T17:50:37,168 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c scilpy/tractanalysis/grid_intersections.c -o build/temp.linux-armv7l-cpython-39/scilpy/tractanalysis/grid_intersections.o 2024-05-08T17:50:37,539 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-05-08T17:50:37,539 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-05-08T17:50:37,539 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-05-08T17:50:37,539 from scilpy/tractanalysis/grid_intersections.c:1241: 2024-05-08T17:50:37,539 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-05-08T17:50:37,540 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-05-08T17:50:37,540 | ^~~~~~~ 2024-05-08T17:50:58,112 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/scilpy/tractanalysis/grid_intersections.o -L/usr/lib -L/usr/lib -o build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/grid_intersections.cpython-39-arm-linux-gnueabihf.so 2024-05-08T17:50:58,291 building 'scilpy.tractanalysis.streamlines_metrics' extension 2024-05-08T17:50:58,291 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c scilpy/tractanalysis/streamlines_metrics.c -o build/temp.linux-armv7l-cpython-39/scilpy/tractanalysis/streamlines_metrics.o 2024-05-08T17:50:58,623 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-05-08T17:50:58,623 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-05-08T17:50:58,623 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-05-08T17:50:58,623 from scilpy/tractanalysis/streamlines_metrics.c:1240: 2024-05-08T17:50:58,623 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-05-08T17:50:58,624 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-05-08T17:50:58,624 | ^~~~~~~ 2024-05-08T17:51:20,714 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/scilpy/tractanalysis/streamlines_metrics.o -L/usr/lib -L/usr/lib -o build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/streamlines_metrics.cpython-39-arm-linux-gnueabihf.so 2024-05-08T17:51:20,929 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-08T17:51:20,929 !! 2024-05-08T17:51:20,930 ******************************************************************************** 2024-05-08T17:51:20,930 Please avoid running ``setup.py`` directly. 2024-05-08T17:51:20,930 Instead, use pypa/build, pypa/installer or other 2024-05-08T17:51:20,930 standards-based tools. 2024-05-08T17:51:20,930 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-08T17:51:20,930 ******************************************************************************** 2024-05-08T17:51:20,931 !! 2024-05-08T17:51:20,931 self.initialize_options() 2024-05-08T17:51:20,964 installing to build/bdist.linux-armv7l/wheel 2024-05-08T17:51:20,965 running install 2024-05-08T17:51:20,991 running install_lib 2024-05-08T17:51:21,025 creating build/bdist.linux-armv7l 2024-05-08T17:51:21,026 creating build/bdist.linux-armv7l/wheel 2024-05-08T17:51:21,030 creating build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,031 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_powder_average.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,034 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bids_validate.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,036 copying build/lib.linux-armv7l-cpython-39/scripts/scil_connectivity_normalize.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,039 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_segment_and_score.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,042 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_apply_transform.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,044 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_volume_scatterplot.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,046 copying build/lib.linux-armv7l-cpython-39/scripts/scil_connectivity_compute_pca.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,049 copying build/lib.linux-armv7l-cpython-39/scripts/scil_connectivity_compare_populations.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,051 copying build/lib.linux-armv7l-cpython-39/scripts/scil_connectivity_filter.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,054 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_count_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,056 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_segment_one_bundle.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,058 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_assign_custom_color.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,060 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_shape_measures.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,063 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_volume_screenshot.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,065 copying build/lib.linux-armv7l-cpython-39/scripts/scil_labels_remove.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,068 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_tractogram_seeds.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,070 copying build/lib.linux-armv7l-cpython-39/scripts/scil_frf_set_diffusivities.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,072 copying build/lib.linux-armv7l-cpython-39/scripts/scil_frf_mean.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,074 copying build/lib.linux-armv7l-cpython-39/scripts/scil_gradients_validate_correct_eddy.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,076 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_prepare_topup_command.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,078 copying build/lib.linux-armv7l-cpython-39/scripts/scil_surface_convert.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,080 copying build/lib.linux-armv7l-cpython-39/scripts/scil_stats_group_comparison.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,082 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_convert_FDF.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,085 copying build/lib.linux-armv7l-cpython-39/scripts/scil_volume_remove_outliers_ransac.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,087 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_connectivity.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,089 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_diameter.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,091 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_resample_nb_points.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,094 copying build/lib.linux-armv7l-cpython-39/scripts/scil_gradients_validate_correct.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,096 copying build/lib.linux-armv7l-cpython-39/scripts/scil_gradients_generate_sampling.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,098 copying build/lib.linux-armv7l-cpython-39/scripts/scil_btensor_metrics.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,101 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_tractogram_seeds_3d.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,103 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_score_many_bundles_one_tractogram.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,106 copying build/lib.linux-armv7l-cpython-39/scripts/scil_freewater_priors.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,108 copying build/lib.linux-armv7l-cpython-39/scripts/scil_lesions_info.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,111 copying build/lib.linux-armv7l-cpython-39/scripts/scil_labels_combine.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,113 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dki_metrics.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,116 copying build/lib.linux-armv7l-cpython-39/scripts/scil_connectivity_print_filenames.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,118 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_filter_by_anatomy.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,120 copying build/lib.linux-armv7l-cpython-39/scripts/scil_volume_flip.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,122 copying build/lib.linux-armv7l-cpython-39/scripts/scil_volume_resample.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,125 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dti_convert_tensors.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,127 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_bundle_screenshot_mni.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,129 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_compute_snr.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,132 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_filter_by_occurence.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,134 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_fodf.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,137 copying build/lib.linux-armv7l-cpython-39/scripts/scil_connectivity_compute_matrices.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,140 copying build/lib.linux-armv7l-cpython-39/scripts/scil_sh_convert.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,142 copying build/lib.linux-armv7l-cpython-39/scripts/scil_fodf_metrics.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,144 copying build/lib.linux-armv7l-cpython-39/scripts/scil_get_version.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,146 copying build/lib.linux-armv7l-cpython-39/scripts/scil_volume_stats_in_ROI.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,149 copying build/lib.linux-armv7l-cpython-39/scripts/scil_json_merge_entries.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,151 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_seed_density_map.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,154 copying build/lib.linux-armv7l-cpython-39/scripts/scil_denoising_nlmeans.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,156 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bingham_metrics.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,158 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_concatenate.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,161 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_convert_hdf5_to_trk.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,163 copying build/lib.linux-armv7l-cpython-39/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,165 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_gradients_screenshot.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,167 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_shuffle.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,169 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_mean_fixel_bingham_metric.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,171 copying build/lib.linux-armv7l-cpython-39/scripts/scil_json_harmonize_entries.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,174 copying build/lib.linux-armv7l-cpython-39/scripts/scil_NODDI_priors.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,176 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_uniformize_endpoints.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,178 copying build/lib.linux-armv7l-cpython-39/scripts/scil_labels_dilate.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,181 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_volume_per_label.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,183 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_bundle_screenshot_mosaic.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,186 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tracking_pft_maps_edit.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,188 copying build/lib.linux-armv7l-cpython-39/scripts/scil_labels_split_volume_by_ids.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,190 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_print_info.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,195 creating build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,196 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_normalize_connectivity.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,198 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_remove_labels.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,200 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_run_nlmeans.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,202 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_kurtosis_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,204 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_snr_in_roi.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,206 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_streamlines_density_map.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,208 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_split_volume_by_ids.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,210 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_resample_volume.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,212 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_count_non_zero_voxels.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,214 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_split_image.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,216 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_fix_dsi_studio_trk.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,218 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_convert_gradients_mrtrix_to_fsl.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,220 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_endpoints_map.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,222 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_todi.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,224 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_validate_and_correct_eddy_gradients.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,226 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_resample_bvals.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,228 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_pft.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,230 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_qball_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,231 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_extract_dwi_shell.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,233 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_resample_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,235 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_merge_json.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,237 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_project_streamlines_to_map.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,239 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_local_tracking_dev.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,241 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_hdf5_average_density_map.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,243 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_convert_sh_basis.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,245 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_visualize_bundles.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,247 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_powder_average.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,249 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_combine_labels.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,250 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_reshape_to_reference.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,252 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_group_comparison.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,254 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_ihMT_maps.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,255 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_filter_tractogram.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,257 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_convert_tensors.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,258 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_harmonize_json.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,260 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_bundle_volume.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,262 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compress_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,263 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,265 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_outlier_rejection.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,266 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_screenshot_dti.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,268 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_flip_surface.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,269 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_remove_invalid_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,271 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_ssst_frf.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,273 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_dti_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,274 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_image_math.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,276 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_connectivity.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,277 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_apply_transform_to_image.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,279 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_visualize_gradients.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,281 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_NODDI_priors.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,282 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_local_tracking.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,284 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_estimate_bundles_diameter.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,285 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_filter_streamlines_by_orientation.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,287 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_visualize_fodf.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,289 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_bundle_voxel_label_map.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,290 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_recognize_single_bundle.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,292 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_prepare_topup_command.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,293 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_dilate_labels.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,295 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_assign_custom_color_to_tractogram.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,297 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_asym_odf_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,298 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_rish_from_sh.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,300 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_msmt_fodf.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,301 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_flip_volume.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,303 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_perform_majority_vote.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,305 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_evaluate_bundles_binary_classification_measures.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,306 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_extract_ushape.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,308 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_prepare_eddy_command.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,310 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_visualize_bundles_mosaic.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,311 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_apply_transform_to_surface.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,313 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_sh_from_signal.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,314 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_print_header.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,316 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_visualize_connectivity.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,318 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_run_commit.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,320 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_detect_dwi_volume_outliers.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,321 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_reorder_connectivity.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,323 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_visualize_seeds_3d.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,325 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_evaluate_connectivity_pairwise_agreement_measures.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,326 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_bundle_volume_per_label.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,328 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_swap_gradient_axis.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,330 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_detect_streamlines_loops.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,331 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_fit_bingham_to_fodf.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,333 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_flip_gradients.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,335 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_apply_transform_to_tractogram.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,336 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_streamlines_math.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,338 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_memsmt_frf.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,340 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_merge_sh.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,341 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_mean_fixel_afd_from_hdf5.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,343 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_evaluate_bundles_pairwise_agreement_measures.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,344 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_generate_gradient_sampling.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,346 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_memsmt_fodf.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,348 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_shuffle_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,349 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_screenshot_volume.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,351 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_recognize_multi_bundles.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,353 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_screenshot_bundle.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,354 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_divide.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,356 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_filter_streamlines_by_length.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,357 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_generate_priors_from_bundle.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,359 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_register_tractogram.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,361 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_add_tracking_mask_to_pft_maps.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,362 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_extract_b0.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,364 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_seed_density_map.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,366 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_split_tractogram.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,367 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_convert_gradients_fsl_to_mrtrix.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,369 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_smooth_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,370 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_filter_tractogram_anatomically.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,372 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_uniformize_streamlines_endpoints.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,374 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_seed_by_labels.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,375 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_analyse_lesions_load.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,377 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_metrics_stats_in_ROI.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,379 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_maps_for_particle_filter_tracking.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,381 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_concatenate_dwi.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,382 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_score_bundles.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,384 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_split_volume_by_labels.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,386 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_visualize_seeds.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,387 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_bundle_mean_std.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,389 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_bundle_mean_std_per_point.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,391 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_evaluate_connectivity_graph_measures.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,392 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_convert_fdf.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,394 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_convert_tractogram.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,396 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_plot_mean_std_per_point.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,397 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_convert_rgb.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,399 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_freewater.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,400 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_streamlines_length_stats.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,402 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_visualize_bingham_fit.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,403 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_smooth_surface.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,405 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_print_connectivity_filenames.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,407 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_execute_asymmetric_filtering.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,408 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_filter_connectivity.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,410 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_count_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,411 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_msmt_frf.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,413 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_cut_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,415 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_validate_and_correct_bvecs.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,416 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_reorder_dwi_philips.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,418 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_apply_bias_field_on_dwi.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,420 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_set_response_function.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,421 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_clean_qbx_clusters.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,423 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_lobe_specific_fodf_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,424 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_remove_outliers_ransac.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,426 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_sf_from_sh.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,428 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_mean_fixel_afd_from_bundles.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,430 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_ssst_fodf.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,431 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_convert_json_to_xlsx.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,433 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_flip_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,435 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_centroid.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,436 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_crop_volume.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,438 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_fodf_max_in_ventricles.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,439 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_screenshot_volume_mosaic_overlap.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,441 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_validate_bids.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,443 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_visualize_scatterplot.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,444 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_assign_uniform_color_to_tractograms.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,446 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_score_tractogram.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,448 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_convert_surface.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,449 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_execute_angle_aware_bilateral_filtering.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,451 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_decompose_connectivity.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,452 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_apply_transform_to_bvecs.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,454 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compare_connectivity.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,455 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_mean_frf.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,457 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_resample_tractogram.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,459 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_MT_maps.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,461 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_qbx.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,462 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_save_connections_from_hdf5.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,464 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_visualize_histogram.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,466 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_pca.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,467 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_fodf_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,469 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_NODDI.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,471 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_compute_mean_fixel_lobe_metric_from_bundles.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,473 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_evaluate_bundles_individual_measures.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,474 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_verify_space_attributes_compatibility.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,476 copying build/lib.linux-armv7l-cpython-39/scripts/legacy/scil_apply_transform_to_hdf5.py -> build/bdist.linux-armv7l/wheel/scripts/legacy 2024-05-08T17:51:21,478 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_commit.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,480 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_split.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,482 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_remove_invalid.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,484 copying build/lib.linux-armv7l-cpython-39/scripts/scil_mti_adjust_B1_header.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,486 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_dti_screenshot.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,489 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_filter_by_length.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,491 copying build/lib.linux-armv7l-cpython-39/scripts/scil_gradients_modify_axes.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,493 copying build/lib.linux-armv7l-cpython-39/scripts/scil_fodf_msmt.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,495 copying build/lib.linux-armv7l-cpython-39/scripts/scil_NODDI_maps.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,497 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_smooth.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,499 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_label_map.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,502 copying build/lib.linux-armv7l-cpython-39/scripts/scil_gradients_convert.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,503 copying build/lib.linux-armv7l-cpython-39/scripts/scil_connectivity_reorder_rois.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,506 copying build/lib.linux-armv7l-cpython-39/scripts/scil_volume_crop.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,507 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_fix_trk.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,510 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_dpp_math.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,513 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_mean_fixel_afd.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,515 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_apply_transform_to_hdf5.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,518 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_split_by_indices.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,520 copying build/lib.linux-armv7l-cpython-39/scripts/scil_volume_b0_synthesis.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,522 copying build/lib.linux-armv7l-cpython-39/scripts/scil_sh_to_sf.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,525 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_pairwise_comparison.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,528 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_pairwise_comparison.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,531 copying build/lib.linux-armv7l-cpython-39/scripts/scil_qball_metrics.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,534 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_to_sh.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,536 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_flip.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,538 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_register.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,540 copying build/lib.linux-armv7l-cpython-39/scripts/scil_sh_fusion.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,542 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tracking_local.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,545 copying build/lib.linux-armv7l-cpython-39/scripts/scil_connectivity_hdf5_average_density_map.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,548 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tracking_local_dev.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,551 copying build/lib.linux-armv7l-cpython-39/scripts/scil_volume_math.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,554 copying build/lib.linux-armv7l-cpython-39/scripts/scil_volume_apply_transform.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,556 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_generate_priors.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,559 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_filter_by_orientation.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,561 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_apply_bias_field.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,563 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dti_metrics.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,566 copying build/lib.linux-armv7l-cpython-39/scripts/scil_plot_stats_per_point.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,569 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_cut_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,572 copying build/lib.linux-armv7l-cpython-39/scripts/scil_labels_split_volume_from_lut.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,574 copying build/lib.linux-armv7l-cpython-39/scripts/scil_fodf_ssst.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,577 copying build/lib.linux-armv7l-cpython-39/scripts/scil_connectivity_pairwise_agreement.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,579 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_extract_shell.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,581 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_detect_volume_outliers.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,584 copying build/lib.linux-armv7l-cpython-39/scripts/scil_gradients_apply_transform.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,586 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_mean_std.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,589 copying build/lib.linux-armv7l-cpython-39/scripts/scil_search_keywords.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,591 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_extract_ushape.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,594 copying build/lib.linux-armv7l-cpython-39/scripts/scil_surface_smooth.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,596 copying build/lib.linux-armv7l-cpython-39/scripts/scil_connectivity_graph_measures.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,599 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_qbx.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,601 copying build/lib.linux-armv7l-cpython-39/scripts/scil_gradients_round_bvals.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,603 copying build/lib.linux-armv7l-cpython-39/scripts/scil_header_print_info.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,605 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_compute_density_map.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,608 copying build/lib.linux-armv7l-cpython-39/scripts/scil_volume_stats_in_labels.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,610 copying build/lib.linux-armv7l-cpython-39/scripts/scil_rgb_convert.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,612 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_compute_TODI.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,615 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_mean_fixel_afd_from_hdf5.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,617 copying build/lib.linux-armv7l-cpython-39/scripts/scil_sh_to_rish.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,618 copying build/lib.linux-armv7l-cpython-39/scripts/scil_aodf_metrics.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,621 copying build/lib.linux-armv7l-cpython-39/scripts/scil_connectivity_math.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,623 copying build/lib.linux-armv7l-cpython-39/scripts/scil_header_validate_compatibility.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,628 creating build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,628 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_mean_fixel_afd_from_hdf5.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,630 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_volume_flip.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,632 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bingham_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,634 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_filter_by_length.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,636 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_fodf_to_bingham.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,637 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_assign_uniform_color.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,639 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_gradients_validate_correct_eddy.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,641 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_count_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,642 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_volume_math.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,644 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_volume_apply_transform.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,646 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_connectivity_filter.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,648 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_compress.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,649 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_split_by_indices.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,651 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_sh_to_sf.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,653 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_volume_count_non_zero_voxels.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,655 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_NODDI_priors.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,656 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_fix_trk.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,658 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_bundle.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,660 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_connectivity_compare_populations.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,661 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_dti_screenshot.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,663 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_volume_remove_outliers_ransac.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,665 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dti_convert_tensors.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,667 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_mti_adjust_B1_header.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,668 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_gradients_round_bvals.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,670 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_fodf_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,671 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_json_convert_entries_to_xlsx.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,673 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_header_validate_compatibility.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,675 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_uniformize_endpoints.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,677 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_gradients_apply_transform.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,678 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_mean_fixel_bingham_metric.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,680 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_surface_smooth.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,682 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_NODDI_maps.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,683 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_connectivity_print_filenames.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,685 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_labels_remove.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,687 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_extract_b0.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,689 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_volume_reshape_to_reference.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,690 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_prepare_eddy_command.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,692 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_bundle_screenshot_mni.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,694 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_gradients_modify_axes.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,695 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_volume_scatterplot.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,698 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_surface_convert.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,699 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_detect_loops.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,701 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_sh_convert.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,703 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_volume_screenshot.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,704 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_mean_fixel_afd.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,706 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_apply_bias_field.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,708 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_volume_crop.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,709 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_plot_stats_per_point.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,711 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_apply_transform.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,713 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_resample_nb_points.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,714 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_mti_maps_MT.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,717 copying build/lib.linux-armv7l-cpython-39/scripts/tests/__init__.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,718 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_register.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,720 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_split.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,722 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_gradients_screenshot.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,724 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_remove_invalid.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,725 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_label_map.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,727 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_apply_transform_to_hdf5.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,729 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_compute_snr.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,731 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tracking_pft_maps_edit.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,733 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_resample.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,735 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_freewater_maps.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,736 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_reorder_philips.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,738 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_convert.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,740 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_labels_split_volume_by_ids.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,741 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_commit.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,743 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_labels_split_volume_from_lut.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,745 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_tractogram_seeds_3d.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,747 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_sh_to_aodf.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,749 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_extract_ushape.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,751 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_diameter.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,752 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dti_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,754 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_smooth.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,756 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_btensor_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,758 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_fodf_msmt.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,759 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_extract_shell.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,761 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_cut_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,763 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_connectivity_normalize.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,765 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_fodf_ssst.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,767 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_header_print_info.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,769 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dki_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,771 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_surface_apply_transform.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,773 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_lesions_info.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,775 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_powder_average.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,777 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_segment_bundles.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,779 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_gradients_convert.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,781 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_tractogram_seeds.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,783 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_frf_mean.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,785 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_json_harmonize_entries.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,787 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_volume_stats_in_ROI.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,789 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_shape_measures.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,791 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_compute_density_map.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,793 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_connectivity_reorder_rois.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,795 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_pairwise_comparison.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,797 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_compute_centroid.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,799 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_fodf_memsmt.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,802 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tracking_pft.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,804 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_prepare_topup_command.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,806 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tracking_pft_maps.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,808 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_compute_endpoints_map.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,810 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_frf_set_diffusivities.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,812 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_stats_group_comparison.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,815 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_connectivity_math.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,817 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_sh_fusion.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,819 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_segment_and_score.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,821 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_rgb_convert.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,823 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tracking_local_dev.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,825 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_mean_std.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,827 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_surface_flip.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,829 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_score_same_bundle_many_segmentations.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,831 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_dpp_math.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,833 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_fodf_max_in_ventricles.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,835 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_frf_memsmt.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,837 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_generate_priors.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,839 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_flip.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,842 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_volume_resample.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,844 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_denoising_nlmeans.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,846 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_bundle_screenshot_mosaic.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,848 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_segment_one_bundles.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,850 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_frf_ssst.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,852 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_volume_per_label.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,854 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_freewater_priors.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,856 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_gradients_validate_correct.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,858 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_filter_by_roi.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,860 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_score_many_bundles_one_tractogram.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,862 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_assign_custom_color.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,864 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_project_streamlines_to_map.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,866 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_pairwise_comparison.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,868 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_connectivity_graph_measures.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,870 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_fodf.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,872 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_connectivity_compute_pca.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,874 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_sh_to_rish.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,876 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_bingham_fit.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,878 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_project_map_to_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,881 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_qbx.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,883 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_volume_stats_in_labels.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,885 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_seed_density_map.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,887 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_filter_by_orientation.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,890 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_connectivity_compute_matrices.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,892 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bids_validate.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,895 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_detect_volume_outliers.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,898 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_labels_dilate.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,900 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_math.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,903 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_gradients_generate_sampling.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,905 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_concatenate.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,907 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_print_info.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,909 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_filter_by_anatomy.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,911 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_shuffle.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,913 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_convert_FDF.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,915 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_frf_msmt.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,917 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_volume_b0_synthesis.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,919 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_aodf_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,921 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_connectivity_pairwise_agreement.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,923 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_volume_screenshot_mosaic.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,925 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_reject_outliers.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,927 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_compute_TODI.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,930 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_clean_qbx_clusters.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,932 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_qball_metrics.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,934 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_connectivity_hdf5_average_density_map.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,936 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_volume_histogram.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,938 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_viz_connectivity.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,941 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_json_merge_entries.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,943 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_convert_hdf5_to_trk.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,945 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_labels_combine.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,947 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tractogram_segment_bundles_for_connectivity.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,949 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_bundle_filter_by_occurence.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,951 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_search_keywords.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,953 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_mti_maps_ihMT.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,955 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_tracking_local.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,958 copying build/lib.linux-armv7l-cpython-39/scripts/tests/test_dwi_to_sh.py -> build/bdist.linux-armv7l/wheel/scripts/tests 2024-05-08T17:51:21,960 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_volume_histogram.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,962 copying build/lib.linux-armv7l-cpython-39/scripts/scil_fodf_max_in_ventricles.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,964 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_compute_centroid.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,966 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_segment_bundles.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,969 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tracking_pft.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,971 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_bingham_fit.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,974 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_score_same_bundle_many_segmentations.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,976 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_prepare_eddy_command.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,978 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_bundle.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,981 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_detect_loops.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,983 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_math.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,986 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_filter_by_roi.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,989 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tracking_pft_maps.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,991 copying build/lib.linux-armv7l-cpython-39/scripts/scil_surface_apply_transform.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,993 copying build/lib.linux-armv7l-cpython-39/scripts/scil_viz_volume_screenshot_mosaic.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,995 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_convert.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,997 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_reject_outliers.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:21,999 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_segment_bundles_for_connectivity.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,002 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_assign_uniform_color.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,005 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_project_streamlines_to_map.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,007 copying build/lib.linux-armv7l-cpython-39/scripts/scil_json_convert_entries_to_xlsx.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,010 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_reorder_philips.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,012 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_compress.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,014 copying build/lib.linux-armv7l-cpython-39/scripts/scil_dwi_extract_b0.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,016 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_clean_qbx_clusters.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,019 copying build/lib.linux-armv7l-cpython-39/scripts/scil_frf_memsmt.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,021 copying build/lib.linux-armv7l-cpython-39/scripts/scil_surface_flip.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,023 copying build/lib.linux-armv7l-cpython-39/scripts/scil_fodf_to_bingham.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,026 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_project_map_to_streamlines.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,028 copying build/lib.linux-armv7l-cpython-39/scripts/scil_frf_ssst.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,031 copying build/lib.linux-armv7l-cpython-39/scripts/scil_volume_reshape_to_reference.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,033 copying build/lib.linux-armv7l-cpython-39/scripts/scil_frf_msmt.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,035 copying build/lib.linux-armv7l-cpython-39/scripts/scil_tractogram_resample.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,038 copying build/lib.linux-armv7l-cpython-39/scripts/scil_mti_maps_ihMT.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,040 copying build/lib.linux-armv7l-cpython-39/scripts/scil_mti_maps_MT.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,043 copying build/lib.linux-armv7l-cpython-39/scripts/scil_sh_to_aodf.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,046 copying build/lib.linux-armv7l-cpython-39/scripts/scil_bundle_compute_endpoints_map.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,048 copying build/lib.linux-armv7l-cpython-39/scripts/scil_volume_count_non_zero_voxels.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,050 copying build/lib.linux-armv7l-cpython-39/scripts/scil_freewater_maps.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,052 copying build/lib.linux-armv7l-cpython-39/scripts/scil_fodf_memsmt.py -> build/bdist.linux-armv7l/wheel/scripts 2024-05-08T17:51:22,055 creating build/bdist.linux-armv7l/wheel/scilpy 2024-05-08T17:51:22,057 creating build/bdist.linux-armv7l/wheel/scilpy/gradients 2024-05-08T17:51:22,059 copying build/lib.linux-armv7l-cpython-39/scilpy/gradients/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/gradients 2024-05-08T17:51:22,060 copying build/lib.linux-armv7l-cpython-39/scilpy/gradients/utils.py -> build/bdist.linux-armv7l/wheel/scilpy/gradients 2024-05-08T17:51:22,062 copying build/lib.linux-armv7l-cpython-39/scilpy/gradients/optimize_gradient_sampling.py -> build/bdist.linux-armv7l/wheel/scilpy/gradients 2024-05-08T17:51:22,065 copying build/lib.linux-armv7l-cpython-39/scilpy/gradients/bvec_bval_tools.py -> build/bdist.linux-armv7l/wheel/scilpy/gradients 2024-05-08T17:51:22,068 copying build/lib.linux-armv7l-cpython-39/scilpy/gradients/gen_gradient_sampling.py -> build/bdist.linux-armv7l/wheel/scilpy/gradients 2024-05-08T17:51:22,071 creating build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,072 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/reproducibility_measures.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,075 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/distance_to_centroid.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,077 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/quick_tools.pyx -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,079 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/grid_intersections.pyx -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,082 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/afd_along_streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,085 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/todi_util.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,087 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/grid_intersections.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,103 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/todi.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,106 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,108 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/quick_tools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,123 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/streamlines_metrics.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,143 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/bundle_operations.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,145 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/streamlines_metrics.pyx -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,147 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/tools.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,149 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/json_utils.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,151 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/scoring.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,154 copying build/lib.linux-armv7l-cpython-39/scilpy/tractanalysis/bingham_metric_along_streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2024-05-08T17:51:22,156 creating build/bdist.linux-armv7l/wheel/scilpy/connectivity 2024-05-08T17:51:22,157 copying build/lib.linux-armv7l-cpython-39/scilpy/connectivity/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/connectivity 2024-05-08T17:51:22,159 copying build/lib.linux-armv7l-cpython-39/scilpy/connectivity/connectivity_tools.py -> build/bdist.linux-armv7l/wheel/scilpy/connectivity 2024-05-08T17:51:22,161 creating build/bdist.linux-armv7l/wheel/scilpy/dwi 2024-05-08T17:51:22,162 copying build/lib.linux-armv7l-cpython-39/scilpy/dwi/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/dwi 2024-05-08T17:51:22,164 copying build/lib.linux-armv7l-cpython-39/scilpy/dwi/utils.py -> build/bdist.linux-armv7l/wheel/scilpy/dwi 2024-05-08T17:51:22,166 copying build/lib.linux-armv7l-cpython-39/scilpy/dwi/operations.py -> build/bdist.linux-armv7l/wheel/scilpy/dwi 2024-05-08T17:51:22,169 creating build/bdist.linux-armv7l/wheel/scilpy/dwi/tests 2024-05-08T17:51:22,170 copying build/lib.linux-armv7l-cpython-39/scilpy/dwi/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/scilpy/dwi/tests 2024-05-08T17:51:22,172 copying build/lib.linux-armv7l-cpython-39/scilpy/dwi/tests/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/dwi/tests 2024-05-08T17:51:22,173 copying build/lib.linux-armv7l-cpython-39/scilpy/dwi/tests/test_operations.py -> build/bdist.linux-armv7l/wheel/scilpy/dwi/tests 2024-05-08T17:51:22,175 copying build/lib.linux-armv7l-cpython-39/scilpy/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy 2024-05-08T17:51:22,177 creating build/bdist.linux-armv7l/wheel/scilpy/gpuparallel 2024-05-08T17:51:22,178 copying build/lib.linux-armv7l-cpython-39/scilpy/gpuparallel/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/gpuparallel 2024-05-08T17:51:22,179 copying build/lib.linux-armv7l-cpython-39/scilpy/gpuparallel/opencl_utils.py -> build/bdist.linux-armv7l/wheel/scilpy/gpuparallel 2024-05-08T17:51:22,182 copying build/lib.linux-armv7l-cpython-39/scilpy/version.py -> build/bdist.linux-armv7l/wheel/scilpy 2024-05-08T17:51:22,184 creating build/bdist.linux-armv7l/wheel/scilpy/preprocessing 2024-05-08T17:51:22,185 copying build/lib.linux-armv7l-cpython-39/scilpy/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/preprocessing 2024-05-08T17:51:22,186 copying build/lib.linux-armv7l-cpython-39/scilpy/preprocessing/distortion_correction.py -> build/bdist.linux-armv7l/wheel/scilpy/preprocessing 2024-05-08T17:51:22,189 creating build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,190 copying build/lib.linux-armv7l-cpython-39/scilpy/io/image.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,192 copying build/lib.linux-armv7l-cpython-39/scilpy/io/mti.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,194 copying build/lib.linux-armv7l-cpython-39/scilpy/io/dvc.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,196 copying build/lib.linux-armv7l-cpython-39/scilpy/io/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,198 copying build/lib.linux-armv7l-cpython-39/scilpy/io/utils.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,200 copying build/lib.linux-armv7l-cpython-39/scilpy/io/hdf5.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,203 copying build/lib.linux-armv7l-cpython-39/scilpy/io/streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,205 copying build/lib.linux-armv7l-cpython-39/scilpy/io/gradients.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,207 copying build/lib.linux-armv7l-cpython-39/scilpy/io/tensor.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,209 copying build/lib.linux-armv7l-cpython-39/scilpy/io/deprecator.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,211 copying build/lib.linux-armv7l-cpython-39/scilpy/io/varian_fdf.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,213 copying build/lib.linux-armv7l-cpython-39/scilpy/io/fetcher.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,215 copying build/lib.linux-armv7l-cpython-39/scilpy/io/btensor.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2024-05-08T17:51:22,218 creating build/bdist.linux-armv7l/wheel/scilpy/reconst 2024-05-08T17:51:22,219 copying build/lib.linux-armv7l-cpython-39/scilpy/reconst/sh.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2024-05-08T17:51:22,222 copying build/lib.linux-armv7l-cpython-39/scilpy/reconst/divide.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2024-05-08T17:51:22,224 copying build/lib.linux-armv7l-cpython-39/scilpy/reconst/mti.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2024-05-08T17:51:22,227 copying build/lib.linux-armv7l-cpython-39/scilpy/reconst/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2024-05-08T17:51:22,228 copying build/lib.linux-armv7l-cpython-39/scilpy/reconst/bingham.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2024-05-08T17:51:22,231 copying build/lib.linux-armv7l-cpython-39/scilpy/reconst/utils.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2024-05-08T17:51:22,233 copying build/lib.linux-armv7l-cpython-39/scilpy/reconst/frf.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2024-05-08T17:51:22,235 copying build/lib.linux-armv7l-cpython-39/scilpy/reconst/fiber_coherence.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2024-05-08T17:51:22,237 copying build/lib.linux-armv7l-cpython-39/scilpy/reconst/fodf.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2024-05-08T17:51:22,239 copying build/lib.linux-armv7l-cpython-39/scilpy/reconst/aodf.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2024-05-08T17:51:22,242 creating build/bdist.linux-armv7l/wheel/scilpy/segment 2024-05-08T17:51:22,242 copying build/lib.linux-armv7l-cpython-39/scilpy/segment/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/segment 2024-05-08T17:51:22,244 copying build/lib.linux-armv7l-cpython-39/scilpy/segment/streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy/segment 2024-05-08T17:51:22,247 copying build/lib.linux-armv7l-cpython-39/scilpy/segment/tractogram_from_roi.py -> build/bdist.linux-armv7l/wheel/scilpy/segment 2024-05-08T17:51:22,249 copying build/lib.linux-armv7l-cpython-39/scilpy/segment/recobundlesx.py -> build/bdist.linux-armv7l/wheel/scilpy/segment 2024-05-08T17:51:22,251 copying build/lib.linux-armv7l-cpython-39/scilpy/segment/models.py -> build/bdist.linux-armv7l/wheel/scilpy/segment 2024-05-08T17:51:22,253 copying build/lib.linux-armv7l-cpython-39/scilpy/segment/voting_scheme.py -> build/bdist.linux-armv7l/wheel/scilpy/segment 2024-05-08T17:51:22,256 creating build/bdist.linux-armv7l/wheel/scilpy/utils 2024-05-08T17:51:22,257 copying build/lib.linux-armv7l-cpython-39/scilpy/utils/filenames.py -> build/bdist.linux-armv7l/wheel/scilpy/utils 2024-05-08T17:51:22,259 copying build/lib.linux-armv7l-cpython-39/scilpy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/utils 2024-05-08T17:51:22,261 copying build/lib.linux-armv7l-cpython-39/scilpy/utils/metrics_tools.py -> build/bdist.linux-armv7l/wheel/scilpy/utils 2024-05-08T17:51:22,263 copying build/lib.linux-armv7l-cpython-39/scilpy/utils/spatial.py -> build/bdist.linux-armv7l/wheel/scilpy/utils 2024-05-08T17:51:22,266 creating build/bdist.linux-armv7l/wheel/scilpy/tractograms 2024-05-08T17:51:22,266 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/streamline_operations.py -> build/bdist.linux-armv7l/wheel/scilpy/tractograms 2024-05-08T17:51:22,269 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/dps_and_dpp_management.py -> build/bdist.linux-armv7l/wheel/scilpy/tractograms 2024-05-08T17:51:22,271 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/streamline_and_mask_operations.py -> build/bdist.linux-armv7l/wheel/scilpy/tractograms 2024-05-08T17:51:22,274 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/uncompress.pyx -> build/bdist.linux-armv7l/wheel/scilpy/tractograms 2024-05-08T17:51:22,276 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/tractograms 2024-05-08T17:51:22,278 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/lazy_tractogram_operations.py -> build/bdist.linux-armv7l/wheel/scilpy/tractograms 2024-05-08T17:51:22,280 creating build/bdist.linux-armv7l/wheel/scilpy/tractograms/tests 2024-05-08T17:51:22,281 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/tests/test_streamline_and_mask_operations.py -> build/bdist.linux-armv7l/wheel/scilpy/tractograms/tests 2024-05-08T17:51:22,283 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/tests/test_tractogram_operations.py -> build/bdist.linux-armv7l/wheel/scilpy/tractograms/tests 2024-05-08T17:51:22,285 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/tests/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/tractograms/tests 2024-05-08T17:51:22,287 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/tests/test_streamline_operations.py -> build/bdist.linux-armv7l/wheel/scilpy/tractograms/tests 2024-05-08T17:51:22,289 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/tests/test_dps_and_dpp_management.py -> build/bdist.linux-armv7l/wheel/scilpy/tractograms/tests 2024-05-08T17:51:22,292 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/uncompress.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/scilpy/tractograms 2024-05-08T17:51:22,317 copying build/lib.linux-armv7l-cpython-39/scilpy/tractograms/tractogram_operations.py -> build/bdist.linux-armv7l/wheel/scilpy/tractograms 2024-05-08T17:51:22,321 creating build/bdist.linux-armv7l/wheel/scilpy/viz 2024-05-08T17:51:22,322 copying build/lib.linux-armv7l-cpython-39/scilpy/viz/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/viz 2024-05-08T17:51:22,324 creating build/bdist.linux-armv7l/wheel/scilpy/viz/backends 2024-05-08T17:51:22,325 copying build/lib.linux-armv7l-cpython-39/scilpy/viz/backends/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/viz/backends 2024-05-08T17:51:22,328 copying build/lib.linux-armv7l-cpython-39/scilpy/viz/backends/fury.py -> build/bdist.linux-armv7l/wheel/scilpy/viz/backends 2024-05-08T17:51:22,330 copying build/lib.linux-armv7l-cpython-39/scilpy/viz/backends/pil.py -> build/bdist.linux-armv7l/wheel/scilpy/viz/backends 2024-05-08T17:51:22,333 copying build/lib.linux-armv7l-cpython-39/scilpy/viz/backends/vtk.py -> build/bdist.linux-armv7l/wheel/scilpy/viz/backends 2024-05-08T17:51:22,336 copying build/lib.linux-armv7l-cpython-39/scilpy/viz/slice.py -> build/bdist.linux-armv7l/wheel/scilpy/viz 2024-05-08T17:51:22,339 creating build/bdist.linux-armv7l/wheel/scilpy/viz/legacy 2024-05-08T17:51:22,340 copying build/lib.linux-armv7l-cpython-39/scilpy/viz/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/viz/legacy 2024-05-08T17:51:22,343 copying build/lib.linux-armv7l-cpython-39/scilpy/viz/legacy/chord_chart.py -> build/bdist.linux-armv7l/wheel/scilpy/viz/legacy 2024-05-08T17:51:22,346 copying build/lib.linux-armv7l-cpython-39/scilpy/viz/utils.py -> build/bdist.linux-armv7l/wheel/scilpy/viz 2024-05-08T17:51:22,348 copying build/lib.linux-armv7l-cpython-39/scilpy/viz/gradients.py -> build/bdist.linux-armv7l/wheel/scilpy/viz 2024-05-08T17:51:22,350 copying build/lib.linux-armv7l-cpython-39/scilpy/viz/color.py -> build/bdist.linux-armv7l/wheel/scilpy/viz 2024-05-08T17:51:22,353 copying build/lib.linux-armv7l-cpython-39/scilpy/viz/screenshot.py -> build/bdist.linux-armv7l/wheel/scilpy/viz 2024-05-08T17:51:22,356 creating build/bdist.linux-armv7l/wheel/scilpy/stats 2024-05-08T17:51:22,357 copying build/lib.linux-armv7l-cpython-39/scilpy/stats/stats.py -> build/bdist.linux-armv7l/wheel/scilpy/stats 2024-05-08T17:51:22,360 copying build/lib.linux-armv7l-cpython-39/scilpy/stats/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/stats 2024-05-08T17:51:22,362 copying build/lib.linux-armv7l-cpython-39/scilpy/stats/utils.py -> build/bdist.linux-armv7l/wheel/scilpy/stats 2024-05-08T17:51:22,365 copying build/lib.linux-armv7l-cpython-39/scilpy/stats/matrix_stats.py -> build/bdist.linux-armv7l/wheel/scilpy/stats 2024-05-08T17:51:22,369 creating build/bdist.linux-armv7l/wheel/scilpy/tracking 2024-05-08T17:51:22,370 copying build/lib.linux-armv7l-cpython-39/scilpy/tracking/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/tracking 2024-05-08T17:51:22,372 copying build/lib.linux-armv7l-cpython-39/scilpy/tracking/tracker.py -> build/bdist.linux-armv7l/wheel/scilpy/tracking 2024-05-08T17:51:22,375 copying build/lib.linux-armv7l-cpython-39/scilpy/tracking/propagator.py -> build/bdist.linux-armv7l/wheel/scilpy/tracking 2024-05-08T17:51:22,378 copying build/lib.linux-armv7l-cpython-39/scilpy/tracking/utils.py -> build/bdist.linux-armv7l/wheel/scilpy/tracking 2024-05-08T17:51:22,381 copying build/lib.linux-armv7l-cpython-39/scilpy/tracking/seed.py -> build/bdist.linux-armv7l/wheel/scilpy/tracking 2024-05-08T17:51:22,385 creating build/bdist.linux-armv7l/wheel/scilpy/image 2024-05-08T17:51:22,386 copying build/lib.linux-armv7l-cpython-39/scilpy/image/reslice.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2024-05-08T17:51:22,388 copying build/lib.linux-armv7l-cpython-39/scilpy/image/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2024-05-08T17:51:22,390 copying build/lib.linux-armv7l-cpython-39/scilpy/image/utils.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2024-05-08T17:51:22,392 copying build/lib.linux-armv7l-cpython-39/scilpy/image/volume_operations.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2024-05-08T17:51:22,396 copying build/lib.linux-armv7l-cpython-39/scilpy/image/labels.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2024-05-08T17:51:22,398 copying build/lib.linux-armv7l-cpython-39/scilpy/image/volume_b0_synthesis.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2024-05-08T17:51:22,401 creating build/bdist.linux-armv7l/wheel/scilpy/image/tests 2024-05-08T17:51:22,402 copying build/lib.linux-armv7l-cpython-39/scilpy/image/tests/test_volume_math.py -> build/bdist.linux-armv7l/wheel/scilpy/image/tests 2024-05-08T17:51:22,406 copying build/lib.linux-armv7l-cpython-39/scilpy/image/tests/test_volume_operations.py -> build/bdist.linux-armv7l/wheel/scilpy/image/tests 2024-05-08T17:51:22,408 copying build/lib.linux-armv7l-cpython-39/scilpy/image/tests/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/image/tests 2024-05-08T17:51:22,410 copying build/lib.linux-armv7l-cpython-39/scilpy/image/tests/test_labels.py -> build/bdist.linux-armv7l/wheel/scilpy/image/tests 2024-05-08T17:51:22,413 copying build/lib.linux-armv7l-cpython-39/scilpy/image/volume_space_management.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2024-05-08T17:51:22,415 copying build/lib.linux-armv7l-cpython-39/scilpy/image/volume_math.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2024-05-08T17:51:22,418 creating build/bdist.linux-armv7l/wheel/scilpy/denoise 2024-05-08T17:51:22,419 copying build/lib.linux-armv7l-cpython-39/scilpy/denoise/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/denoise 2024-05-08T17:51:22,421 copying build/lib.linux-armv7l-cpython-39/scilpy/denoise/asym_filtering.py -> build/bdist.linux-armv7l/wheel/scilpy/denoise 2024-05-08T17:51:22,423 running install_data 2024-05-08T17:51:22,459 creating build/bdist.linux-armv7l/wheel/scilpy-2.0.1.data 2024-05-08T17:51:22,459 creating build/bdist.linux-armv7l/wheel/scilpy-2.0.1.data/data 2024-05-08T17:51:22,460 creating build/bdist.linux-armv7l/wheel/scilpy-2.0.1.data/data/data 2024-05-08T17:51:22,461 creating build/bdist.linux-armv7l/wheel/scilpy-2.0.1.data/data/data/LUT 2024-05-08T17:51:22,462 copying data/LUT/freesurfer_desikan_killiany.json -> build/bdist.linux-armv7l/wheel/scilpy-2.0.1.data/data/data/LUT 2024-05-08T17:51:22,464 copying data/LUT/freesurfer_subcortical.json -> build/bdist.linux-armv7l/wheel/scilpy-2.0.1.data/data/data/LUT 2024-05-08T17:51:22,466 copying data/LUT/dk_aggregate_structures.json -> build/bdist.linux-armv7l/wheel/scilpy-2.0.1.data/data/data/LUT 2024-05-08T17:51:22,468 running install_egg_info 2024-05-08T17:51:22,506 Copying scilpy.egg-info to build/bdist.linux-armv7l/wheel/scilpy-2.0.1-py3.9.egg-info 2024-05-08T17:51:22,520 running install_scripts 2024-05-08T17:51:22,560 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2024-05-08T17:51:22,564 creating build/bdist.linux-armv7l/wheel/scilpy-2.0.1.dist-info/WHEEL 2024-05-08T17:51:22,567 creating '/tmp/pip-wheel-oxq2k9_8/scilpy-2.0.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-08T17:51:22,569 adding 'scilpy/__init__.py' 2024-05-08T17:51:22,571 adding 'scilpy/version.py' 2024-05-08T17:51:22,573 adding 'scilpy/connectivity/__init__.py' 2024-05-08T17:51:22,575 adding 'scilpy/connectivity/connectivity_tools.py' 2024-05-08T17:51:22,576 adding 'scilpy/denoise/__init__.py' 2024-05-08T17:51:22,579 adding 'scilpy/denoise/asym_filtering.py' 2024-05-08T17:51:22,581 adding 'scilpy/dwi/__init__.py' 2024-05-08T17:51:22,583 adding 'scilpy/dwi/operations.py' 2024-05-08T17:51:22,585 adding 'scilpy/dwi/utils.py' 2024-05-08T17:51:22,587 adding 'scilpy/dwi/tests/__init__.py' 2024-05-08T17:51:22,588 adding 'scilpy/dwi/tests/test_operations.py' 2024-05-08T17:51:22,590 adding 'scilpy/dwi/tests/test_utils.py' 2024-05-08T17:51:22,591 adding 'scilpy/gpuparallel/__init__.py' 2024-05-08T17:51:22,593 adding 'scilpy/gpuparallel/opencl_utils.py' 2024-05-08T17:51:22,595 adding 'scilpy/gradients/__init__.py' 2024-05-08T17:51:22,597 adding 'scilpy/gradients/bvec_bval_tools.py' 2024-05-08T17:51:22,599 adding 'scilpy/gradients/gen_gradient_sampling.py' 2024-05-08T17:51:22,601 adding 'scilpy/gradients/optimize_gradient_sampling.py' 2024-05-08T17:51:22,602 adding 'scilpy/gradients/utils.py' 2024-05-08T17:51:22,604 adding 'scilpy/image/__init__.py' 2024-05-08T17:51:22,606 adding 'scilpy/image/labels.py' 2024-05-08T17:51:22,608 adding 'scilpy/image/reslice.py' 2024-05-08T17:51:22,610 adding 'scilpy/image/utils.py' 2024-05-08T17:51:22,611 adding 'scilpy/image/volume_b0_synthesis.py' 2024-05-08T17:51:22,614 adding 'scilpy/image/volume_math.py' 2024-05-08T17:51:22,618 adding 'scilpy/image/volume_operations.py' 2024-05-08T17:51:22,620 adding 'scilpy/image/volume_space_management.py' 2024-05-08T17:51:22,622 adding 'scilpy/image/tests/__init__.py' 2024-05-08T17:51:22,623 adding 'scilpy/image/tests/test_labels.py' 2024-05-08T17:51:22,625 adding 'scilpy/image/tests/test_volume_math.py' 2024-05-08T17:51:22,627 adding 'scilpy/image/tests/test_volume_operations.py' 2024-05-08T17:51:22,629 adding 'scilpy/io/__init__.py' 2024-05-08T17:51:22,631 adding 'scilpy/io/btensor.py' 2024-05-08T17:51:22,632 adding 'scilpy/io/deprecator.py' 2024-05-08T17:51:22,634 adding 'scilpy/io/dvc.py' 2024-05-08T17:51:22,635 adding 'scilpy/io/fetcher.py' 2024-05-08T17:51:22,637 adding 'scilpy/io/gradients.py' 2024-05-08T17:51:22,639 adding 'scilpy/io/hdf5.py' 2024-05-08T17:51:22,640 adding 'scilpy/io/image.py' 2024-05-08T17:51:22,642 adding 'scilpy/io/mti.py' 2024-05-08T17:51:22,644 adding 'scilpy/io/streamlines.py' 2024-05-08T17:51:22,646 adding 'scilpy/io/tensor.py' 2024-05-08T17:51:22,651 adding 'scilpy/io/utils.py' 2024-05-08T17:51:22,653 adding 'scilpy/io/varian_fdf.py' 2024-05-08T17:51:22,655 adding 'scilpy/preprocessing/__init__.py' 2024-05-08T17:51:22,656 adding 'scilpy/preprocessing/distortion_correction.py' 2024-05-08T17:51:22,658 adding 'scilpy/reconst/__init__.py' 2024-05-08T17:51:22,659 adding 'scilpy/reconst/aodf.py' 2024-05-08T17:51:22,662 adding 'scilpy/reconst/bingham.py' 2024-05-08T17:51:22,664 adding 'scilpy/reconst/divide.py' 2024-05-08T17:51:22,665 adding 'scilpy/reconst/fiber_coherence.py' 2024-05-08T17:51:22,667 adding 'scilpy/reconst/fodf.py' 2024-05-08T17:51:22,670 adding 'scilpy/reconst/frf.py' 2024-05-08T17:51:22,672 adding 'scilpy/reconst/mti.py' 2024-05-08T17:51:22,675 adding 'scilpy/reconst/sh.py' 2024-05-08T17:51:22,676 adding 'scilpy/reconst/utils.py' 2024-05-08T17:51:22,678 adding 'scilpy/segment/__init__.py' 2024-05-08T17:51:22,680 adding 'scilpy/segment/models.py' 2024-05-08T17:51:22,682 adding 'scilpy/segment/recobundlesx.py' 2024-05-08T17:51:22,684 adding 'scilpy/segment/streamlines.py' 2024-05-08T17:51:22,687 adding 'scilpy/segment/tractogram_from_roi.py' 2024-05-08T17:51:22,689 adding 'scilpy/segment/voting_scheme.py' 2024-05-08T17:51:22,691 adding 'scilpy/stats/__init__.py' 2024-05-08T17:51:22,692 adding 'scilpy/stats/matrix_stats.py' 2024-05-08T17:51:22,694 adding 'scilpy/stats/stats.py' 2024-05-08T17:51:22,697 adding 'scilpy/stats/utils.py' 2024-05-08T17:51:22,699 adding 'scilpy/tracking/__init__.py' 2024-05-08T17:51:22,701 adding 'scilpy/tracking/propagator.py' 2024-05-08T17:51:22,703 adding 'scilpy/tracking/seed.py' 2024-05-08T17:51:22,707 adding 'scilpy/tracking/tracker.py' 2024-05-08T17:51:22,710 adding 'scilpy/tracking/utils.py' 2024-05-08T17:51:22,712 adding 'scilpy/tractanalysis/__init__.py' 2024-05-08T17:51:22,713 adding 'scilpy/tractanalysis/afd_along_streamlines.py' 2024-05-08T17:51:22,714 adding 'scilpy/tractanalysis/bingham_metric_along_streamlines.py' 2024-05-08T17:51:22,717 adding 'scilpy/tractanalysis/bundle_operations.py' 2024-05-08T17:51:22,718 adding 'scilpy/tractanalysis/distance_to_centroid.py' 2024-05-08T17:51:22,922 adding 'scilpy/tractanalysis/grid_intersections.cpython-39-arm-linux-gnueabihf.so' 2024-05-08T17:51:22,930 adding 'scilpy/tractanalysis/grid_intersections.pyx' 2024-05-08T17:51:22,931 adding 'scilpy/tractanalysis/json_utils.py' 2024-05-08T17:51:23,121 adding 'scilpy/tractanalysis/quick_tools.cpython-39-arm-linux-gnueabihf.so' 2024-05-08T17:51:23,128 adding 'scilpy/tractanalysis/quick_tools.pyx' 2024-05-08T17:51:23,131 adding 'scilpy/tractanalysis/reproducibility_measures.py' 2024-05-08T17:51:23,133 adding 'scilpy/tractanalysis/scoring.py' 2024-05-08T17:51:23,340 adding 'scilpy/tractanalysis/streamlines_metrics.cpython-39-arm-linux-gnueabihf.so' 2024-05-08T17:51:23,348 adding 'scilpy/tractanalysis/streamlines_metrics.pyx' 2024-05-08T17:51:23,351 adding 'scilpy/tractanalysis/todi.py' 2024-05-08T17:51:23,352 adding 'scilpy/tractanalysis/todi_util.py' 2024-05-08T17:51:23,354 adding 'scilpy/tractanalysis/tools.py' 2024-05-08T17:51:23,356 adding 'scilpy/tractograms/__init__.py' 2024-05-08T17:51:23,358 adding 'scilpy/tractograms/dps_and_dpp_management.py' 2024-05-08T17:51:23,359 adding 'scilpy/tractograms/lazy_tractogram_operations.py' 2024-05-08T17:51:23,362 adding 'scilpy/tractograms/streamline_and_mask_operations.py' 2024-05-08T17:51:23,365 adding 'scilpy/tractograms/streamline_operations.py' 2024-05-08T17:51:23,370 adding 'scilpy/tractograms/tractogram_operations.py' 2024-05-08T17:51:23,576 adding 'scilpy/tractograms/uncompress.cpython-39-arm-linux-gnueabihf.so' 2024-05-08T17:51:23,584 adding 'scilpy/tractograms/uncompress.pyx' 2024-05-08T17:51:23,586 adding 'scilpy/tractograms/tests/__init__.py' 2024-05-08T17:51:23,588 adding 'scilpy/tractograms/tests/test_dps_and_dpp_management.py' 2024-05-08T17:51:23,590 adding 'scilpy/tractograms/tests/test_streamline_and_mask_operations.py' 2024-05-08T17:51:23,592 adding 'scilpy/tractograms/tests/test_streamline_operations.py' 2024-05-08T17:51:23,593 adding 'scilpy/tractograms/tests/test_tractogram_operations.py' 2024-05-08T17:51:23,595 adding 'scilpy/utils/__init__.py' 2024-05-08T17:51:23,597 adding 'scilpy/utils/filenames.py' 2024-05-08T17:51:23,599 adding 'scilpy/utils/metrics_tools.py' 2024-05-08T17:51:23,600 adding 'scilpy/utils/spatial.py' 2024-05-08T17:51:23,602 adding 'scilpy/viz/__init__.py' 2024-05-08T17:51:23,604 adding 'scilpy/viz/color.py' 2024-05-08T17:51:23,606 adding 'scilpy/viz/gradients.py' 2024-05-08T17:51:23,607 adding 'scilpy/viz/screenshot.py' 2024-05-08T17:51:23,609 adding 'scilpy/viz/slice.py' 2024-05-08T17:51:23,611 adding 'scilpy/viz/utils.py' 2024-05-08T17:51:23,613 adding 'scilpy/viz/backends/__init__.py' 2024-05-08T17:51:23,615 adding 'scilpy/viz/backends/fury.py' 2024-05-08T17:51:23,617 adding 'scilpy/viz/backends/pil.py' 2024-05-08T17:51:23,619 adding 'scilpy/viz/backends/vtk.py' 2024-05-08T17:51:23,620 adding 'scilpy/viz/legacy/__init__.py' 2024-05-08T17:51:23,622 adding 'scilpy/viz/legacy/chord_chart.py' 2024-05-08T17:51:23,625 adding 'scilpy-2.0.1.data/data/data/LUT/dk_aggregate_structures.json' 2024-05-08T17:51:23,627 adding 'scilpy-2.0.1.data/data/data/LUT/freesurfer_desikan_killiany.json' 2024-05-08T17:51:23,628 adding 'scilpy-2.0.1.data/data/data/LUT/freesurfer_subcortical.json' 2024-05-08T17:51:23,634 adding 'scripts/__init__.py' 2024-05-08T17:51:23,636 adding 'scripts/scil_NODDI_maps.py' 2024-05-08T17:51:23,637 adding 'scripts/scil_NODDI_priors.py' 2024-05-08T17:51:23,639 adding 'scripts/scil_aodf_metrics.py' 2024-05-08T17:51:23,642 adding 'scripts/scil_bids_validate.py' 2024-05-08T17:51:23,643 adding 'scripts/scil_bingham_metrics.py' 2024-05-08T17:51:23,645 adding 'scripts/scil_btensor_metrics.py' 2024-05-08T17:51:23,647 adding 'scripts/scil_bundle_clean_qbx_clusters.py' 2024-05-08T17:51:23,649 adding 'scripts/scil_bundle_compute_centroid.py' 2024-05-08T17:51:23,650 adding 'scripts/scil_bundle_compute_endpoints_map.py' 2024-05-08T17:51:23,652 adding 'scripts/scil_bundle_diameter.py' 2024-05-08T17:51:23,654 adding 'scripts/scil_bundle_filter_by_occurence.py' 2024-05-08T17:51:23,656 adding 'scripts/scil_bundle_generate_priors.py' 2024-05-08T17:51:23,658 adding 'scripts/scil_bundle_label_map.py' 2024-05-08T17:51:23,660 adding 'scripts/scil_bundle_mean_fixel_afd.py' 2024-05-08T17:51:23,661 adding 'scripts/scil_bundle_mean_fixel_afd_from_hdf5.py' 2024-05-08T17:51:23,663 adding 'scripts/scil_bundle_mean_fixel_bingham_metric.py' 2024-05-08T17:51:23,664 adding 'scripts/scil_bundle_mean_std.py' 2024-05-08T17:51:23,667 adding 'scripts/scil_bundle_pairwise_comparison.py' 2024-05-08T17:51:23,668 adding 'scripts/scil_bundle_reject_outliers.py' 2024-05-08T17:51:23,670 adding 'scripts/scil_bundle_score_many_bundles_one_tractogram.py' 2024-05-08T17:51:23,672 adding 'scripts/scil_bundle_score_same_bundle_many_segmentations.py' 2024-05-08T17:51:23,674 adding 'scripts/scil_bundle_shape_measures.py' 2024-05-08T17:51:23,676 adding 'scripts/scil_bundle_volume_per_label.py' 2024-05-08T17:51:23,677 adding 'scripts/scil_connectivity_compare_populations.py' 2024-05-08T17:51:23,680 adding 'scripts/scil_connectivity_compute_matrices.py' 2024-05-08T17:51:23,682 adding 'scripts/scil_connectivity_compute_pca.py' 2024-05-08T17:51:23,684 adding 'scripts/scil_connectivity_filter.py' 2024-05-08T17:51:23,686 adding 'scripts/scil_connectivity_graph_measures.py' 2024-05-08T17:51:23,687 adding 'scripts/scil_connectivity_hdf5_average_density_map.py' 2024-05-08T17:51:23,689 adding 'scripts/scil_connectivity_math.py' 2024-05-08T17:51:23,690 adding 'scripts/scil_connectivity_normalize.py' 2024-05-08T17:51:23,692 adding 'scripts/scil_connectivity_pairwise_agreement.py' 2024-05-08T17:51:23,693 adding 'scripts/scil_connectivity_print_filenames.py' 2024-05-08T17:51:23,695 adding 'scripts/scil_connectivity_reorder_rois.py' 2024-05-08T17:51:23,696 adding 'scripts/scil_denoising_nlmeans.py' 2024-05-08T17:51:23,698 adding 'scripts/scil_dki_metrics.py' 2024-05-08T17:51:23,700 adding 'scripts/scil_dti_convert_tensors.py' 2024-05-08T17:51:23,703 adding 'scripts/scil_dti_metrics.py' 2024-05-08T17:51:23,704 adding 'scripts/scil_dwi_apply_bias_field.py' 2024-05-08T17:51:23,706 adding 'scripts/scil_dwi_compute_snr.py' 2024-05-08T17:51:23,707 adding 'scripts/scil_dwi_concatenate.py' 2024-05-08T17:51:23,709 adding 'scripts/scil_dwi_convert_FDF.py' 2024-05-08T17:51:23,710 adding 'scripts/scil_dwi_detect_volume_outliers.py' 2024-05-08T17:51:23,711 adding 'scripts/scil_dwi_extract_b0.py' 2024-05-08T17:51:23,713 adding 'scripts/scil_dwi_extract_shell.py' 2024-05-08T17:51:23,714 adding 'scripts/scil_dwi_powder_average.py' 2024-05-08T17:51:23,716 adding 'scripts/scil_dwi_prepare_eddy_command.py' 2024-05-08T17:51:23,718 adding 'scripts/scil_dwi_prepare_topup_command.py' 2024-05-08T17:51:23,719 adding 'scripts/scil_dwi_reorder_philips.py' 2024-05-08T17:51:23,721 adding 'scripts/scil_dwi_split_by_indices.py' 2024-05-08T17:51:23,722 adding 'scripts/scil_dwi_to_sh.py' 2024-05-08T17:51:23,724 adding 'scripts/scil_fodf_max_in_ventricles.py' 2024-05-08T17:51:23,726 adding 'scripts/scil_fodf_memsmt.py' 2024-05-08T17:51:23,728 adding 'scripts/scil_fodf_metrics.py' 2024-05-08T17:51:23,730 adding 'scripts/scil_fodf_msmt.py' 2024-05-08T17:51:23,731 adding 'scripts/scil_fodf_ssst.py' 2024-05-08T17:51:23,733 adding 'scripts/scil_fodf_to_bingham.py' 2024-05-08T17:51:23,735 adding 'scripts/scil_freewater_maps.py' 2024-05-08T17:51:23,736 adding 'scripts/scil_freewater_priors.py' 2024-05-08T17:51:23,737 adding 'scripts/scil_frf_mean.py' 2024-05-08T17:51:23,739 adding 'scripts/scil_frf_memsmt.py' 2024-05-08T17:51:23,741 adding 'scripts/scil_frf_msmt.py' 2024-05-08T17:51:23,742 adding 'scripts/scil_frf_set_diffusivities.py' 2024-05-08T17:51:23,744 adding 'scripts/scil_frf_ssst.py' 2024-05-08T17:51:23,745 adding 'scripts/scil_get_version.py' 2024-05-08T17:51:23,747 adding 'scripts/scil_gradients_apply_transform.py' 2024-05-08T17:51:23,748 adding 'scripts/scil_gradients_convert.py' 2024-05-08T17:51:23,750 adding 'scripts/scil_gradients_generate_sampling.py' 2024-05-08T17:51:23,752 adding 'scripts/scil_gradients_modify_axes.py' 2024-05-08T17:51:23,753 adding 'scripts/scil_gradients_round_bvals.py' 2024-05-08T17:51:23,755 adding 'scripts/scil_gradients_validate_correct.py' 2024-05-08T17:51:23,756 adding 'scripts/scil_gradients_validate_correct_eddy.py' 2024-05-08T17:51:23,757 adding 'scripts/scil_header_print_info.py' 2024-05-08T17:51:23,759 adding 'scripts/scil_header_validate_compatibility.py' 2024-05-08T17:51:23,761 adding 'scripts/scil_json_convert_entries_to_xlsx.py' 2024-05-08T17:51:23,762 adding 'scripts/scil_json_harmonize_entries.py' 2024-05-08T17:51:23,764 adding 'scripts/scil_json_merge_entries.py' 2024-05-08T17:51:23,765 adding 'scripts/scil_labels_combine.py' 2024-05-08T17:51:23,767 adding 'scripts/scil_labels_dilate.py' 2024-05-08T17:51:23,768 adding 'scripts/scil_labels_remove.py' 2024-05-08T17:51:23,769 adding 'scripts/scil_labels_split_volume_by_ids.py' 2024-05-08T17:51:23,771 adding 'scripts/scil_labels_split_volume_from_lut.py' 2024-05-08T17:51:23,773 adding 'scripts/scil_lesions_info.py' 2024-05-08T17:51:23,774 adding 'scripts/scil_mti_adjust_B1_header.py' 2024-05-08T17:51:23,776 adding 'scripts/scil_mti_maps_MT.py' 2024-05-08T17:51:23,778 adding 'scripts/scil_mti_maps_ihMT.py' 2024-05-08T17:51:23,780 adding 'scripts/scil_plot_stats_per_point.py' 2024-05-08T17:51:23,782 adding 'scripts/scil_qball_metrics.py' 2024-05-08T17:51:23,783 adding 'scripts/scil_rgb_convert.py' 2024-05-08T17:51:23,785 adding 'scripts/scil_search_keywords.py' 2024-05-08T17:51:23,786 adding 'scripts/scil_sh_convert.py' 2024-05-08T17:51:23,788 adding 'scripts/scil_sh_fusion.py' 2024-05-08T17:51:23,790 adding 'scripts/scil_sh_to_aodf.py' 2024-05-08T17:51:23,791 adding 'scripts/scil_sh_to_rish.py' 2024-05-08T17:51:23,793 adding 'scripts/scil_sh_to_sf.py' 2024-05-08T17:51:23,795 adding 'scripts/scil_stats_group_comparison.py' 2024-05-08T17:51:23,796 adding 'scripts/scil_surface_apply_transform.py' 2024-05-08T17:51:23,797 adding 'scripts/scil_surface_convert.py' 2024-05-08T17:51:23,799 adding 'scripts/scil_surface_flip.py' 2024-05-08T17:51:23,800 adding 'scripts/scil_surface_smooth.py' 2024-05-08T17:51:23,802 adding 'scripts/scil_tracking_local.py' 2024-05-08T17:51:23,805 adding 'scripts/scil_tracking_local_dev.py' 2024-05-08T17:51:23,807 adding 'scripts/scil_tracking_pft.py' 2024-05-08T17:51:23,808 adding 'scripts/scil_tracking_pft_maps.py' 2024-05-08T17:51:23,810 adding 'scripts/scil_tracking_pft_maps_edit.py' 2024-05-08T17:51:23,811 adding 'scripts/scil_tractogram_apply_transform.py' 2024-05-08T17:51:23,813 adding 'scripts/scil_tractogram_apply_transform_to_hdf5.py' 2024-05-08T17:51:23,815 adding 'scripts/scil_tractogram_assign_custom_color.py' 2024-05-08T17:51:23,816 adding 'scripts/scil_tractogram_assign_uniform_color.py' 2024-05-08T17:51:23,819 adding 'scripts/scil_tractogram_commit.py' 2024-05-08T17:51:23,821 adding 'scripts/scil_tractogram_compress.py' 2024-05-08T17:51:23,822 adding 'scripts/scil_tractogram_compute_TODI.py' 2024-05-08T17:51:23,824 adding 'scripts/scil_tractogram_compute_density_map.py' 2024-05-08T17:51:23,825 adding 'scripts/scil_tractogram_convert.py' 2024-05-08T17:51:23,827 adding 'scripts/scil_tractogram_convert_hdf5_to_trk.py' 2024-05-08T17:51:23,828 adding 'scripts/scil_tractogram_count_streamlines.py' 2024-05-08T17:51:23,830 adding 'scripts/scil_tractogram_cut_streamlines.py' 2024-05-08T17:51:23,832 adding 'scripts/scil_tractogram_detect_loops.py' 2024-05-08T17:51:23,834 adding 'scripts/scil_tractogram_dpp_math.py' 2024-05-08T17:51:23,835 adding 'scripts/scil_tractogram_extract_ushape.py' 2024-05-08T17:51:23,838 adding 'scripts/scil_tractogram_filter_by_anatomy.py' 2024-05-08T17:51:23,839 adding 'scripts/scil_tractogram_filter_by_length.py' 2024-05-08T17:51:23,841 adding 'scripts/scil_tractogram_filter_by_orientation.py' 2024-05-08T17:51:23,843 adding 'scripts/scil_tractogram_filter_by_roi.py' 2024-05-08T17:51:23,845 adding 'scripts/scil_tractogram_fix_trk.py' 2024-05-08T17:51:23,846 adding 'scripts/scil_tractogram_flip.py' 2024-05-08T17:51:23,848 adding 'scripts/scil_tractogram_math.py' 2024-05-08T17:51:23,850 adding 'scripts/scil_tractogram_pairwise_comparison.py' 2024-05-08T17:51:23,851 adding 'scripts/scil_tractogram_print_info.py' 2024-05-08T17:51:23,853 adding 'scripts/scil_tractogram_project_map_to_streamlines.py' 2024-05-08T17:51:23,854 adding 'scripts/scil_tractogram_project_streamlines_to_map.py' 2024-05-08T17:51:23,856 adding 'scripts/scil_tractogram_qbx.py' 2024-05-08T17:51:23,857 adding 'scripts/scil_tractogram_register.py' 2024-05-08T17:51:23,859 adding 'scripts/scil_tractogram_remove_invalid.py' 2024-05-08T17:51:23,860 adding 'scripts/scil_tractogram_resample.py' 2024-05-08T17:51:23,862 adding 'scripts/scil_tractogram_resample_nb_points.py' 2024-05-08T17:51:23,863 adding 'scripts/scil_tractogram_seed_density_map.py' 2024-05-08T17:51:23,866 adding 'scripts/scil_tractogram_segment_and_score.py' 2024-05-08T17:51:23,868 adding 'scripts/scil_tractogram_segment_bundles.py' 2024-05-08T17:51:23,870 adding 'scripts/scil_tractogram_segment_bundles_for_connectivity.py' 2024-05-08T17:51:23,872 adding 'scripts/scil_tractogram_segment_one_bundle.py' 2024-05-08T17:51:23,873 adding 'scripts/scil_tractogram_shuffle.py' 2024-05-08T17:51:23,875 adding 'scripts/scil_tractogram_smooth.py' 2024-05-08T17:51:23,876 adding 'scripts/scil_tractogram_split.py' 2024-05-08T17:51:23,878 adding 'scripts/scil_tractogram_uniformize_endpoints.py' 2024-05-08T17:51:23,879 adding 'scripts/scil_viz_bingham_fit.py' 2024-05-08T17:51:23,881 adding 'scripts/scil_viz_bundle.py' 2024-05-08T17:51:23,883 adding 'scripts/scil_viz_bundle_screenshot_mni.py' 2024-05-08T17:51:23,885 adding 'scripts/scil_viz_bundle_screenshot_mosaic.py' 2024-05-08T17:51:23,888 adding 'scripts/scil_viz_connectivity.py' 2024-05-08T17:51:23,889 adding 'scripts/scil_viz_dti_screenshot.py' 2024-05-08T17:51:23,892 adding 'scripts/scil_viz_fodf.py' 2024-05-08T17:51:23,893 adding 'scripts/scil_viz_gradients_screenshot.py' 2024-05-08T17:51:23,895 adding 'scripts/scil_viz_tractogram_seeds.py' 2024-05-08T17:51:23,896 adding 'scripts/scil_viz_tractogram_seeds_3d.py' 2024-05-08T17:51:23,898 adding 'scripts/scil_viz_volume_histogram.py' 2024-05-08T17:51:23,900 adding 'scripts/scil_viz_volume_scatterplot.py' 2024-05-08T17:51:23,901 adding 'scripts/scil_viz_volume_screenshot.py' 2024-05-08T17:51:23,903 adding 'scripts/scil_viz_volume_screenshot_mosaic.py' 2024-05-08T17:51:23,904 adding 'scripts/scil_volume_apply_transform.py' 2024-05-08T17:51:23,906 adding 'scripts/scil_volume_b0_synthesis.py' 2024-05-08T17:51:23,907 adding 'scripts/scil_volume_count_non_zero_voxels.py' 2024-05-08T17:51:23,909 adding 'scripts/scil_volume_crop.py' 2024-05-08T17:51:23,910 adding 'scripts/scil_volume_flip.py' 2024-05-08T17:51:23,911 adding 'scripts/scil_volume_math.py' 2024-05-08T17:51:23,913 adding 'scripts/scil_volume_remove_outliers_ransac.py' 2024-05-08T17:51:23,914 adding 'scripts/scil_volume_resample.py' 2024-05-08T17:51:23,916 adding 'scripts/scil_volume_reshape_to_reference.py' 2024-05-08T17:51:23,917 adding 'scripts/scil_volume_stats_in_ROI.py' 2024-05-08T17:51:23,919 adding 'scripts/scil_volume_stats_in_labels.py' 2024-05-08T17:51:23,923 adding 'scripts/legacy/__init__.py' 2024-05-08T17:51:23,925 adding 'scripts/legacy/scil_add_tracking_mask_to_pft_maps.py' 2024-05-08T17:51:23,926 adding 'scripts/legacy/scil_analyse_lesions_load.py' 2024-05-08T17:51:23,927 adding 'scripts/legacy/scil_apply_bias_field_on_dwi.py' 2024-05-08T17:51:23,928 adding 'scripts/legacy/scil_apply_transform_to_bvecs.py' 2024-05-08T17:51:23,930 adding 'scripts/legacy/scil_apply_transform_to_hdf5.py' 2024-05-08T17:51:23,931 adding 'scripts/legacy/scil_apply_transform_to_image.py' 2024-05-08T17:51:23,932 adding 'scripts/legacy/scil_apply_transform_to_surface.py' 2024-05-08T17:51:23,933 adding 'scripts/legacy/scil_apply_transform_to_tractogram.py' 2024-05-08T17:51:23,934 adding 'scripts/legacy/scil_assign_custom_color_to_tractogram.py' 2024-05-08T17:51:23,936 adding 'scripts/legacy/scil_assign_uniform_color_to_tractograms.py' 2024-05-08T17:51:23,937 adding 'scripts/legacy/scil_clean_qbx_clusters.py' 2024-05-08T17:51:23,938 adding 'scripts/legacy/scil_combine_labels.py' 2024-05-08T17:51:23,939 adding 'scripts/legacy/scil_compare_connectivity.py' 2024-05-08T17:51:23,940 adding 'scripts/legacy/scil_compress_streamlines.py' 2024-05-08T17:51:23,942 adding 'scripts/legacy/scil_compute_MT_maps.py' 2024-05-08T17:51:23,943 adding 'scripts/legacy/scil_compute_NODDI.py' 2024-05-08T17:51:23,944 adding 'scripts/legacy/scil_compute_NODDI_priors.py' 2024-05-08T17:51:23,945 adding 'scripts/legacy/scil_compute_asym_odf_metrics.py' 2024-05-08T17:51:23,947 adding 'scripts/legacy/scil_compute_bundle_mean_std.py' 2024-05-08T17:51:23,948 adding 'scripts/legacy/scil_compute_bundle_mean_std_per_point.py' 2024-05-08T17:51:23,949 adding 'scripts/legacy/scil_compute_bundle_volume.py' 2024-05-08T17:51:23,950 adding 'scripts/legacy/scil_compute_bundle_volume_per_label.py' 2024-05-08T17:51:23,951 adding 'scripts/legacy/scil_compute_bundle_voxel_label_map.py' 2024-05-08T17:51:23,953 adding 'scripts/legacy/scil_compute_centroid.py' 2024-05-08T17:51:23,954 adding 'scripts/legacy/scil_compute_connectivity.py' 2024-05-08T17:51:23,955 adding 'scripts/legacy/scil_compute_divide.py' 2024-05-08T17:51:23,956 adding 'scripts/legacy/scil_compute_dti_metrics.py' 2024-05-08T17:51:23,957 adding 'scripts/legacy/scil_compute_endpoints_map.py' 2024-05-08T17:51:23,959 adding 'scripts/legacy/scil_compute_fodf_max_in_ventricles.py' 2024-05-08T17:51:23,960 adding 'scripts/legacy/scil_compute_fodf_metrics.py' 2024-05-08T17:51:23,961 adding 'scripts/legacy/scil_compute_freewater.py' 2024-05-08T17:51:23,962 adding 'scripts/legacy/scil_compute_hdf5_average_density_map.py' 2024-05-08T17:51:23,963 adding 'scripts/legacy/scil_compute_ihMT_maps.py' 2024-05-08T17:51:23,965 adding 'scripts/legacy/scil_compute_kurtosis_metrics.py' 2024-05-08T17:51:23,966 adding 'scripts/legacy/scil_compute_lobe_specific_fodf_metrics.py' 2024-05-08T17:51:23,967 adding 'scripts/legacy/scil_compute_local_tracking.py' 2024-05-08T17:51:23,968 adding 'scripts/legacy/scil_compute_local_tracking_dev.py' 2024-05-08T17:51:23,969 adding 'scripts/legacy/scil_compute_maps_for_particle_filter_tracking.py' 2024-05-08T17:51:23,971 adding 'scripts/legacy/scil_compute_mean_fixel_afd_from_bundles.py' 2024-05-08T17:51:23,972 adding 'scripts/legacy/scil_compute_mean_fixel_afd_from_hdf5.py' 2024-05-08T17:51:23,973 adding 'scripts/legacy/scil_compute_mean_fixel_lobe_metric_from_bundles.py' 2024-05-08T17:51:23,974 adding 'scripts/legacy/scil_compute_mean_frf.py' 2024-05-08T17:51:23,975 adding 'scripts/legacy/scil_compute_memsmt_fodf.py' 2024-05-08T17:51:23,977 adding 'scripts/legacy/scil_compute_memsmt_frf.py' 2024-05-08T17:51:23,978 adding 'scripts/legacy/scil_compute_metrics_stats_in_ROI.py' 2024-05-08T17:51:23,979 adding 'scripts/legacy/scil_compute_msmt_fodf.py' 2024-05-08T17:51:23,980 adding 'scripts/legacy/scil_compute_msmt_frf.py' 2024-05-08T17:51:23,981 adding 'scripts/legacy/scil_compute_pca.py' 2024-05-08T17:51:23,983 adding 'scripts/legacy/scil_compute_pft.py' 2024-05-08T17:51:23,984 adding 'scripts/legacy/scil_compute_powder_average.py' 2024-05-08T17:51:23,985 adding 'scripts/legacy/scil_compute_qball_metrics.py' 2024-05-08T17:51:23,987 adding 'scripts/legacy/scil_compute_qbx.py' 2024-05-08T17:51:23,988 adding 'scripts/legacy/scil_compute_rish_from_sh.py' 2024-05-08T17:51:23,989 adding 'scripts/legacy/scil_compute_seed_by_labels.py' 2024-05-08T17:51:23,990 adding 'scripts/legacy/scil_compute_seed_density_map.py' 2024-05-08T17:51:23,991 adding 'scripts/legacy/scil_compute_sf_from_sh.py' 2024-05-08T17:51:23,993 adding 'scripts/legacy/scil_compute_sh_from_signal.py' 2024-05-08T17:51:23,994 adding 'scripts/legacy/scil_compute_ssst_fodf.py' 2024-05-08T17:51:23,995 adding 'scripts/legacy/scil_compute_ssst_frf.py' 2024-05-08T17:51:23,996 adding 'scripts/legacy/scil_compute_streamlines_density_map.py' 2024-05-08T17:51:23,997 adding 'scripts/legacy/scil_compute_streamlines_length_stats.py' 2024-05-08T17:51:23,999 adding 'scripts/legacy/scil_compute_todi.py' 2024-05-08T17:51:24,000 adding 'scripts/legacy/scil_concatenate_dwi.py' 2024-05-08T17:51:24,001 adding 'scripts/legacy/scil_convert_fdf.py' 2024-05-08T17:51:24,002 adding 'scripts/legacy/scil_convert_gradients_fsl_to_mrtrix.py' 2024-05-08T17:51:24,003 adding 'scripts/legacy/scil_convert_gradients_mrtrix_to_fsl.py' 2024-05-08T17:51:24,005 adding 'scripts/legacy/scil_convert_json_to_xlsx.py' 2024-05-08T17:51:24,006 adding 'scripts/legacy/scil_convert_rgb.py' 2024-05-08T17:51:24,007 adding 'scripts/legacy/scil_convert_sh_basis.py' 2024-05-08T17:51:24,008 adding 'scripts/legacy/scil_convert_surface.py' 2024-05-08T17:51:24,009 adding 'scripts/legacy/scil_convert_tensors.py' 2024-05-08T17:51:24,011 adding 'scripts/legacy/scil_convert_tractogram.py' 2024-05-08T17:51:24,012 adding 'scripts/legacy/scil_count_non_zero_voxels.py' 2024-05-08T17:51:24,013 adding 'scripts/legacy/scil_count_streamlines.py' 2024-05-08T17:51:24,014 adding 'scripts/legacy/scil_crop_volume.py' 2024-05-08T17:51:24,015 adding 'scripts/legacy/scil_cut_streamlines.py' 2024-05-08T17:51:24,017 adding 'scripts/legacy/scil_decompose_connectivity.py' 2024-05-08T17:51:24,018 adding 'scripts/legacy/scil_detect_dwi_volume_outliers.py' 2024-05-08T17:51:24,019 adding 'scripts/legacy/scil_detect_streamlines_loops.py' 2024-05-08T17:51:24,020 adding 'scripts/legacy/scil_dilate_labels.py' 2024-05-08T17:51:24,021 adding 'scripts/legacy/scil_estimate_bundles_diameter.py' 2024-05-08T17:51:24,022 adding 'scripts/legacy/scil_evaluate_bundles_binary_classification_measures.py' 2024-05-08T17:51:24,024 adding 'scripts/legacy/scil_evaluate_bundles_individual_measures.py' 2024-05-08T17:51:24,025 adding 'scripts/legacy/scil_evaluate_bundles_pairwise_agreement_measures.py' 2024-05-08T17:51:24,026 adding 'scripts/legacy/scil_evaluate_connectivity_graph_measures.py' 2024-05-08T17:51:24,027 adding 'scripts/legacy/scil_evaluate_connectivity_pairwise_agreement_measures.py' 2024-05-08T17:51:24,028 adding 'scripts/legacy/scil_execute_angle_aware_bilateral_filtering.py' 2024-05-08T17:51:24,030 adding 'scripts/legacy/scil_execute_asymmetric_filtering.py' 2024-05-08T17:51:24,031 adding 'scripts/legacy/scil_extract_b0.py' 2024-05-08T17:51:24,032 adding 'scripts/legacy/scil_extract_dwi_shell.py' 2024-05-08T17:51:24,033 adding 'scripts/legacy/scil_extract_ushape.py' 2024-05-08T17:51:24,034 adding 'scripts/legacy/scil_filter_connectivity.py' 2024-05-08T17:51:24,036 adding 'scripts/legacy/scil_filter_streamlines_by_length.py' 2024-05-08T17:51:24,037 adding 'scripts/legacy/scil_filter_streamlines_by_orientation.py' 2024-05-08T17:51:24,038 adding 'scripts/legacy/scil_filter_tractogram.py' 2024-05-08T17:51:24,039 adding 'scripts/legacy/scil_filter_tractogram_anatomically.py' 2024-05-08T17:51:24,040 adding 'scripts/legacy/scil_fit_bingham_to_fodf.py' 2024-05-08T17:51:24,042 adding 'scripts/legacy/scil_fix_dsi_studio_trk.py' 2024-05-08T17:51:24,043 adding 'scripts/legacy/scil_flip_gradients.py' 2024-05-08T17:51:24,044 adding 'scripts/legacy/scil_flip_streamlines.py' 2024-05-08T17:51:24,045 adding 'scripts/legacy/scil_flip_surface.py' 2024-05-08T17:51:24,046 adding 'scripts/legacy/scil_flip_volume.py' 2024-05-08T17:51:24,048 adding 'scripts/legacy/scil_generate_gradient_sampling.py' 2024-05-08T17:51:24,049 adding 'scripts/legacy/scil_generate_priors_from_bundle.py' 2024-05-08T17:51:24,050 adding 'scripts/legacy/scil_group_comparison.py' 2024-05-08T17:51:24,051 adding 'scripts/legacy/scil_harmonize_json.py' 2024-05-08T17:51:24,052 adding 'scripts/legacy/scil_image_math.py' 2024-05-08T17:51:24,054 adding 'scripts/legacy/scil_merge_json.py' 2024-05-08T17:51:24,055 adding 'scripts/legacy/scil_merge_sh.py' 2024-05-08T17:51:24,056 adding 'scripts/legacy/scil_normalize_connectivity.py' 2024-05-08T17:51:24,057 adding 'scripts/legacy/scil_outlier_rejection.py' 2024-05-08T17:51:24,058 adding 'scripts/legacy/scil_perform_majority_vote.py' 2024-05-08T17:51:24,060 adding 'scripts/legacy/scil_plot_mean_std_per_point.py' 2024-05-08T17:51:24,061 adding 'scripts/legacy/scil_prepare_eddy_command.py' 2024-05-08T17:51:24,062 adding 'scripts/legacy/scil_prepare_topup_command.py' 2024-05-08T17:51:24,063 adding 'scripts/legacy/scil_print_connectivity_filenames.py' 2024-05-08T17:51:24,064 adding 'scripts/legacy/scil_print_header.py' 2024-05-08T17:51:24,066 adding 'scripts/legacy/scil_project_streamlines_to_map.py' 2024-05-08T17:51:24,067 adding 'scripts/legacy/scil_recognize_multi_bundles.py' 2024-05-08T17:51:24,068 adding 'scripts/legacy/scil_recognize_single_bundle.py' 2024-05-08T17:51:24,069 adding 'scripts/legacy/scil_register_tractogram.py' 2024-05-08T17:51:24,070 adding 'scripts/legacy/scil_remove_invalid_streamlines.py' 2024-05-08T17:51:24,072 adding 'scripts/legacy/scil_remove_labels.py' 2024-05-08T17:51:24,073 adding 'scripts/legacy/scil_remove_outliers_ransac.py' 2024-05-08T17:51:24,074 adding 'scripts/legacy/scil_reorder_connectivity.py' 2024-05-08T17:51:24,075 adding 'scripts/legacy/scil_reorder_dwi_philips.py' 2024-05-08T17:51:24,077 adding 'scripts/legacy/scil_resample_bvals.py' 2024-05-08T17:51:24,078 adding 'scripts/legacy/scil_resample_streamlines.py' 2024-05-08T17:51:24,079 adding 'scripts/legacy/scil_resample_tractogram.py' 2024-05-08T17:51:24,080 adding 'scripts/legacy/scil_resample_volume.py' 2024-05-08T17:51:24,081 adding 'scripts/legacy/scil_reshape_to_reference.py' 2024-05-08T17:51:24,083 adding 'scripts/legacy/scil_run_commit.py' 2024-05-08T17:51:24,084 adding 'scripts/legacy/scil_run_nlmeans.py' 2024-05-08T17:51:24,085 adding 'scripts/legacy/scil_save_connections_from_hdf5.py' 2024-05-08T17:51:24,086 adding 'scripts/legacy/scil_score_bundles.py' 2024-05-08T17:51:24,087 adding 'scripts/legacy/scil_score_tractogram.py' 2024-05-08T17:51:24,089 adding 'scripts/legacy/scil_screenshot_bundle.py' 2024-05-08T17:51:24,090 adding 'scripts/legacy/scil_screenshot_dti.py' 2024-05-08T17:51:24,091 adding 'scripts/legacy/scil_screenshot_volume.py' 2024-05-08T17:51:24,092 adding 'scripts/legacy/scil_screenshot_volume_mosaic_overlap.py' 2024-05-08T17:51:24,094 adding 'scripts/legacy/scil_set_response_function.py' 2024-05-08T17:51:24,095 adding 'scripts/legacy/scil_shuffle_streamlines.py' 2024-05-08T17:51:24,096 adding 'scripts/legacy/scil_smooth_streamlines.py' 2024-05-08T17:51:24,097 adding 'scripts/legacy/scil_smooth_surface.py' 2024-05-08T17:51:24,098 adding 'scripts/legacy/scil_snr_in_roi.py' 2024-05-08T17:51:24,100 adding 'scripts/legacy/scil_split_image.py' 2024-05-08T17:51:24,101 adding 'scripts/legacy/scil_split_tractogram.py' 2024-05-08T17:51:24,102 adding 'scripts/legacy/scil_split_volume_by_ids.py' 2024-05-08T17:51:24,103 adding 'scripts/legacy/scil_split_volume_by_labels.py' 2024-05-08T17:51:24,104 adding 'scripts/legacy/scil_streamlines_math.py' 2024-05-08T17:51:24,105 adding 'scripts/legacy/scil_swap_gradient_axis.py' 2024-05-08T17:51:24,107 adding 'scripts/legacy/scil_uniformize_streamlines_endpoints.py' 2024-05-08T17:51:24,108 adding 'scripts/legacy/scil_validate_and_correct_bvecs.py' 2024-05-08T17:51:24,109 adding 'scripts/legacy/scil_validate_and_correct_eddy_gradients.py' 2024-05-08T17:51:24,111 adding 'scripts/legacy/scil_validate_bids.py' 2024-05-08T17:51:24,112 adding 'scripts/legacy/scil_verify_space_attributes_compatibility.py' 2024-05-08T17:51:24,113 adding 'scripts/legacy/scil_visualize_bingham_fit.py' 2024-05-08T17:51:24,115 adding 'scripts/legacy/scil_visualize_bundles.py' 2024-05-08T17:51:24,116 adding 'scripts/legacy/scil_visualize_bundles_mosaic.py' 2024-05-08T17:51:24,117 adding 'scripts/legacy/scil_visualize_connectivity.py' 2024-05-08T17:51:24,119 adding 'scripts/legacy/scil_visualize_fodf.py' 2024-05-08T17:51:24,120 adding 'scripts/legacy/scil_visualize_gradients.py' 2024-05-08T17:51:24,121 adding 'scripts/legacy/scil_visualize_histogram.py' 2024-05-08T17:51:24,122 adding 'scripts/legacy/scil_visualize_scatterplot.py' 2024-05-08T17:51:24,123 adding 'scripts/legacy/scil_visualize_seeds.py' 2024-05-08T17:51:24,125 adding 'scripts/legacy/scil_visualize_seeds_3d.py' 2024-05-08T17:51:24,129 adding 'scripts/tests/__init__.py' 2024-05-08T17:51:24,130 adding 'scripts/tests/test_NODDI_maps.py' 2024-05-08T17:51:24,132 adding 'scripts/tests/test_NODDI_priors.py' 2024-05-08T17:51:24,133 adding 'scripts/tests/test_aodf_metrics.py' 2024-05-08T17:51:24,135 adding 'scripts/tests/test_bids_validate.py' 2024-05-08T17:51:24,136 adding 'scripts/tests/test_bingham_metrics.py' 2024-05-08T17:51:24,138 adding 'scripts/tests/test_btensor_metrics.py' 2024-05-08T17:51:24,139 adding 'scripts/tests/test_bundle_clean_qbx_clusters.py' 2024-05-08T17:51:24,140 adding 'scripts/tests/test_bundle_compute_centroid.py' 2024-05-08T17:51:24,141 adding 'scripts/tests/test_bundle_compute_endpoints_map.py' 2024-05-08T17:51:24,143 adding 'scripts/tests/test_bundle_diameter.py' 2024-05-08T17:51:24,144 adding 'scripts/tests/test_bundle_filter_by_occurence.py' 2024-05-08T17:51:24,145 adding 'scripts/tests/test_bundle_generate_priors.py' 2024-05-08T17:51:24,146 adding 'scripts/tests/test_bundle_label_map.py' 2024-05-08T17:51:24,148 adding 'scripts/tests/test_bundle_mean_fixel_afd.py' 2024-05-08T17:51:24,149 adding 'scripts/tests/test_bundle_mean_fixel_afd_from_hdf5.py' 2024-05-08T17:51:24,151 adding 'scripts/tests/test_bundle_mean_fixel_bingham_metric.py' 2024-05-08T17:51:24,152 adding 'scripts/tests/test_bundle_mean_std.py' 2024-05-08T17:51:24,153 adding 'scripts/tests/test_bundle_pairwise_comparison.py' 2024-05-08T17:51:24,155 adding 'scripts/tests/test_bundle_reject_outliers.py' 2024-05-08T17:51:24,156 adding 'scripts/tests/test_bundle_score_many_bundles_one_tractogram.py' 2024-05-08T17:51:24,158 adding 'scripts/tests/test_bundle_score_same_bundle_many_segmentations.py' 2024-05-08T17:51:24,159 adding 'scripts/tests/test_bundle_shape_measures.py' 2024-05-08T17:51:24,161 adding 'scripts/tests/test_bundle_volume_per_label.py' 2024-05-08T17:51:24,162 adding 'scripts/tests/test_connectivity_compare_populations.py' 2024-05-08T17:51:24,163 adding 'scripts/tests/test_connectivity_compute_matrices.py' 2024-05-08T17:51:24,164 adding 'scripts/tests/test_connectivity_compute_pca.py' 2024-05-08T17:51:24,166 adding 'scripts/tests/test_connectivity_filter.py' 2024-05-08T17:51:24,167 adding 'scripts/tests/test_connectivity_graph_measures.py' 2024-05-08T17:51:24,168 adding 'scripts/tests/test_connectivity_hdf5_average_density_map.py' 2024-05-08T17:51:24,169 adding 'scripts/tests/test_connectivity_math.py' 2024-05-08T17:51:24,171 adding 'scripts/tests/test_connectivity_normalize.py' 2024-05-08T17:51:24,172 adding 'scripts/tests/test_connectivity_pairwise_agreement.py' 2024-05-08T17:51:24,173 adding 'scripts/tests/test_connectivity_print_filenames.py' 2024-05-08T17:51:24,174 adding 'scripts/tests/test_connectivity_reorder_rois.py' 2024-05-08T17:51:24,175 adding 'scripts/tests/test_denoising_nlmeans.py' 2024-05-08T17:51:24,177 adding 'scripts/tests/test_dki_metrics.py' 2024-05-08T17:51:24,178 adding 'scripts/tests/test_dti_convert_tensors.py' 2024-05-08T17:51:24,179 adding 'scripts/tests/test_dti_metrics.py' 2024-05-08T17:51:24,181 adding 'scripts/tests/test_dwi_apply_bias_field.py' 2024-05-08T17:51:24,182 adding 'scripts/tests/test_dwi_compute_snr.py' 2024-05-08T17:51:24,183 adding 'scripts/tests/test_dwi_concatenate.py' 2024-05-08T17:51:24,184 adding 'scripts/tests/test_dwi_convert_FDF.py' 2024-05-08T17:51:24,185 adding 'scripts/tests/test_dwi_detect_volume_outliers.py' 2024-05-08T17:51:24,187 adding 'scripts/tests/test_dwi_extract_b0.py' 2024-05-08T17:51:24,188 adding 'scripts/tests/test_dwi_extract_shell.py' 2024-05-08T17:51:24,189 adding 'scripts/tests/test_dwi_powder_average.py' 2024-05-08T17:51:24,191 adding 'scripts/tests/test_dwi_prepare_eddy_command.py' 2024-05-08T17:51:24,192 adding 'scripts/tests/test_dwi_prepare_topup_command.py' 2024-05-08T17:51:24,194 adding 'scripts/tests/test_dwi_reorder_philips.py' 2024-05-08T17:51:24,195 adding 'scripts/tests/test_dwi_split_by_indices.py' 2024-05-08T17:51:24,197 adding 'scripts/tests/test_dwi_to_sh.py' 2024-05-08T17:51:24,198 adding 'scripts/tests/test_fodf_max_in_ventricles.py' 2024-05-08T17:51:24,199 adding 'scripts/tests/test_fodf_memsmt.py' 2024-05-08T17:51:24,201 adding 'scripts/tests/test_fodf_metrics.py' 2024-05-08T17:51:24,203 adding 'scripts/tests/test_fodf_msmt.py' 2024-05-08T17:51:24,204 adding 'scripts/tests/test_fodf_ssst.py' 2024-05-08T17:51:24,205 adding 'scripts/tests/test_fodf_to_bingham.py' 2024-05-08T17:51:24,207 adding 'scripts/tests/test_freewater_maps.py' 2024-05-08T17:51:24,208 adding 'scripts/tests/test_freewater_priors.py' 2024-05-08T17:51:24,209 adding 'scripts/tests/test_frf_mean.py' 2024-05-08T17:51:24,210 adding 'scripts/tests/test_frf_memsmt.py' 2024-05-08T17:51:24,212 adding 'scripts/tests/test_frf_msmt.py' 2024-05-08T17:51:24,213 adding 'scripts/tests/test_frf_set_diffusivities.py' 2024-05-08T17:51:24,214 adding 'scripts/tests/test_frf_ssst.py' 2024-05-08T17:51:24,216 adding 'scripts/tests/test_gradients_apply_transform.py' 2024-05-08T17:51:24,217 adding 'scripts/tests/test_gradients_convert.py' 2024-05-08T17:51:24,218 adding 'scripts/tests/test_gradients_generate_sampling.py' 2024-05-08T17:51:24,219 adding 'scripts/tests/test_gradients_modify_axes.py' 2024-05-08T17:51:24,221 adding 'scripts/tests/test_gradients_round_bvals.py' 2024-05-08T17:51:24,222 adding 'scripts/tests/test_gradients_validate_correct.py' 2024-05-08T17:51:24,223 adding 'scripts/tests/test_gradients_validate_correct_eddy.py' 2024-05-08T17:51:24,224 adding 'scripts/tests/test_header_print_info.py' 2024-05-08T17:51:24,226 adding 'scripts/tests/test_header_validate_compatibility.py' 2024-05-08T17:51:24,227 adding 'scripts/tests/test_json_convert_entries_to_xlsx.py' 2024-05-08T17:51:24,228 adding 'scripts/tests/test_json_harmonize_entries.py' 2024-05-08T17:51:24,229 adding 'scripts/tests/test_json_merge_entries.py' 2024-05-08T17:51:24,231 adding 'scripts/tests/test_labels_combine.py' 2024-05-08T17:51:24,232 adding 'scripts/tests/test_labels_dilate.py' 2024-05-08T17:51:24,233 adding 'scripts/tests/test_labels_remove.py' 2024-05-08T17:51:24,234 adding 'scripts/tests/test_labels_split_volume_by_ids.py' 2024-05-08T17:51:24,236 adding 'scripts/tests/test_labels_split_volume_from_lut.py' 2024-05-08T17:51:24,237 adding 'scripts/tests/test_lesions_info.py' 2024-05-08T17:51:24,238 adding 'scripts/tests/test_mti_adjust_B1_header.py' 2024-05-08T17:51:24,240 adding 'scripts/tests/test_mti_maps_MT.py' 2024-05-08T17:51:24,242 adding 'scripts/tests/test_mti_maps_ihMT.py' 2024-05-08T17:51:24,243 adding 'scripts/tests/test_plot_stats_per_point.py' 2024-05-08T17:51:24,244 adding 'scripts/tests/test_qball_metrics.py' 2024-05-08T17:51:24,245 adding 'scripts/tests/test_rgb_convert.py' 2024-05-08T17:51:24,247 adding 'scripts/tests/test_search_keywords.py' 2024-05-08T17:51:24,248 adding 'scripts/tests/test_sh_convert.py' 2024-05-08T17:51:24,249 adding 'scripts/tests/test_sh_fusion.py' 2024-05-08T17:51:24,251 adding 'scripts/tests/test_sh_to_aodf.py' 2024-05-08T17:51:24,252 adding 'scripts/tests/test_sh_to_rish.py' 2024-05-08T17:51:24,253 adding 'scripts/tests/test_sh_to_sf.py' 2024-05-08T17:51:24,254 adding 'scripts/tests/test_stats_group_comparison.py' 2024-05-08T17:51:24,256 adding 'scripts/tests/test_surface_apply_transform.py' 2024-05-08T17:51:24,257 adding 'scripts/tests/test_surface_convert.py' 2024-05-08T17:51:24,258 adding 'scripts/tests/test_surface_flip.py' 2024-05-08T17:51:24,259 adding 'scripts/tests/test_surface_smooth.py' 2024-05-08T17:51:24,261 adding 'scripts/tests/test_tracking_local.py' 2024-05-08T17:51:24,262 adding 'scripts/tests/test_tracking_local_dev.py' 2024-05-08T17:51:24,263 adding 'scripts/tests/test_tracking_pft.py' 2024-05-08T17:51:24,265 adding 'scripts/tests/test_tracking_pft_maps.py' 2024-05-08T17:51:24,266 adding 'scripts/tests/test_tracking_pft_maps_edit.py' 2024-05-08T17:51:24,267 adding 'scripts/tests/test_tractogram_apply_transform.py' 2024-05-08T17:51:24,268 adding 'scripts/tests/test_tractogram_apply_transform_to_hdf5.py' 2024-05-08T17:51:24,270 adding 'scripts/tests/test_tractogram_assign_custom_color.py' 2024-05-08T17:51:24,271 adding 'scripts/tests/test_tractogram_assign_uniform_color.py' 2024-05-08T17:51:24,272 adding 'scripts/tests/test_tractogram_commit.py' 2024-05-08T17:51:24,273 adding 'scripts/tests/test_tractogram_compress.py' 2024-05-08T17:51:24,275 adding 'scripts/tests/test_tractogram_compute_TODI.py' 2024-05-08T17:51:24,276 adding 'scripts/tests/test_tractogram_compute_density_map.py' 2024-05-08T17:51:24,277 adding 'scripts/tests/test_tractogram_convert.py' 2024-05-08T17:51:24,278 adding 'scripts/tests/test_tractogram_convert_hdf5_to_trk.py' 2024-05-08T17:51:24,280 adding 'scripts/tests/test_tractogram_count_streamlines.py' 2024-05-08T17:51:24,281 adding 'scripts/tests/test_tractogram_cut_streamlines.py' 2024-05-08T17:51:24,282 adding 'scripts/tests/test_tractogram_detect_loops.py' 2024-05-08T17:51:24,284 adding 'scripts/tests/test_tractogram_dpp_math.py' 2024-05-08T17:51:24,285 adding 'scripts/tests/test_tractogram_extract_ushape.py' 2024-05-08T17:51:24,286 adding 'scripts/tests/test_tractogram_filter_by_anatomy.py' 2024-05-08T17:51:24,288 adding 'scripts/tests/test_tractogram_filter_by_length.py' 2024-05-08T17:51:24,289 adding 'scripts/tests/test_tractogram_filter_by_orientation.py' 2024-05-08T17:51:24,291 adding 'scripts/tests/test_tractogram_filter_by_roi.py' 2024-05-08T17:51:24,292 adding 'scripts/tests/test_tractogram_fix_trk.py' 2024-05-08T17:51:24,293 adding 'scripts/tests/test_tractogram_flip.py' 2024-05-08T17:51:24,294 adding 'scripts/tests/test_tractogram_math.py' 2024-05-08T17:51:24,296 adding 'scripts/tests/test_tractogram_pairwise_comparison.py' 2024-05-08T17:51:24,297 adding 'scripts/tests/test_tractogram_print_info.py' 2024-05-08T17:51:24,298 adding 'scripts/tests/test_tractogram_project_map_to_streamlines.py' 2024-05-08T17:51:24,300 adding 'scripts/tests/test_tractogram_project_streamlines_to_map.py' 2024-05-08T17:51:24,301 adding 'scripts/tests/test_tractogram_qbx.py' 2024-05-08T17:51:24,302 adding 'scripts/tests/test_tractogram_register.py' 2024-05-08T17:51:24,303 adding 'scripts/tests/test_tractogram_remove_invalid.py' 2024-05-08T17:51:24,305 adding 'scripts/tests/test_tractogram_resample.py' 2024-05-08T17:51:24,306 adding 'scripts/tests/test_tractogram_resample_nb_points.py' 2024-05-08T17:51:24,307 adding 'scripts/tests/test_tractogram_seed_density_map.py' 2024-05-08T17:51:24,309 adding 'scripts/tests/test_tractogram_segment_and_score.py' 2024-05-08T17:51:24,310 adding 'scripts/tests/test_tractogram_segment_bundles.py' 2024-05-08T17:51:24,311 adding 'scripts/tests/test_tractogram_segment_bundles_for_connectivity.py' 2024-05-08T17:51:24,312 adding 'scripts/tests/test_tractogram_segment_one_bundles.py' 2024-05-08T17:51:24,313 adding 'scripts/tests/test_tractogram_shuffle.py' 2024-05-08T17:51:24,315 adding 'scripts/tests/test_tractogram_smooth.py' 2024-05-08T17:51:24,316 adding 'scripts/tests/test_tractogram_split.py' 2024-05-08T17:51:24,317 adding 'scripts/tests/test_tractogram_uniformize_endpoints.py' 2024-05-08T17:51:24,318 adding 'scripts/tests/test_viz_bingham_fit.py' 2024-05-08T17:51:24,320 adding 'scripts/tests/test_viz_bundle.py' 2024-05-08T17:51:24,321 adding 'scripts/tests/test_viz_bundle_screenshot_mni.py' 2024-05-08T17:51:24,322 adding 'scripts/tests/test_viz_bundle_screenshot_mosaic.py' 2024-05-08T17:51:24,323 adding 'scripts/tests/test_viz_connectivity.py' 2024-05-08T17:51:24,325 adding 'scripts/tests/test_viz_dti_screenshot.py' 2024-05-08T17:51:24,326 adding 'scripts/tests/test_viz_fodf.py' 2024-05-08T17:51:24,327 adding 'scripts/tests/test_viz_gradients_screenshot.py' 2024-05-08T17:51:24,328 adding 'scripts/tests/test_viz_tractogram_seeds.py' 2024-05-08T17:51:24,329 adding 'scripts/tests/test_viz_tractogram_seeds_3d.py' 2024-05-08T17:51:24,331 adding 'scripts/tests/test_viz_volume_histogram.py' 2024-05-08T17:51:24,332 adding 'scripts/tests/test_viz_volume_scatterplot.py' 2024-05-08T17:51:24,333 adding 'scripts/tests/test_viz_volume_screenshot.py' 2024-05-08T17:51:24,334 adding 'scripts/tests/test_viz_volume_screenshot_mosaic.py' 2024-05-08T17:51:24,336 adding 'scripts/tests/test_volume_apply_transform.py' 2024-05-08T17:51:24,337 adding 'scripts/tests/test_volume_b0_synthesis.py' 2024-05-08T17:51:24,338 adding 'scripts/tests/test_volume_count_non_zero_voxels.py' 2024-05-08T17:51:24,339 adding 'scripts/tests/test_volume_crop.py' 2024-05-08T17:51:24,341 adding 'scripts/tests/test_volume_flip.py' 2024-05-08T17:51:24,342 adding 'scripts/tests/test_volume_math.py' 2024-05-08T17:51:24,343 adding 'scripts/tests/test_volume_remove_outliers_ransac.py' 2024-05-08T17:51:24,344 adding 'scripts/tests/test_volume_resample.py' 2024-05-08T17:51:24,346 adding 'scripts/tests/test_volume_reshape_to_reference.py' 2024-05-08T17:51:24,347 adding 'scripts/tests/test_volume_stats_in_ROI.py' 2024-05-08T17:51:24,348 adding 'scripts/tests/test_volume_stats_in_labels.py' 2024-05-08T17:51:24,349 adding 'scilpy-2.0.1.dist-info/LICENSE' 2024-05-08T17:51:24,351 adding 'scilpy-2.0.1.dist-info/METADATA' 2024-05-08T17:51:24,352 adding 'scilpy-2.0.1.dist-info/WHEEL' 2024-05-08T17:51:24,354 adding 'scilpy-2.0.1.dist-info/entry_points.txt' 2024-05-08T17:51:24,355 adding 'scilpy-2.0.1.dist-info/top_level.txt' 2024-05-08T17:51:24,366 adding 'scilpy-2.0.1.dist-info/RECORD' 2024-05-08T17:51:24,408 removing build/bdist.linux-armv7l/wheel 2024-05-08T17:51:25,279 Building wheel for scilpy (setup.py): finished with status 'done' 2024-05-08T17:51:25,305 Created wheel for scilpy: filename=scilpy-2.0.1-cp39-cp39-linux_armv7l.whl size=2346040 sha256=470bc903bed1d1844c0ff95453a6029e40de028b65227e343b200cec1a75e453 2024-05-08T17:51:25,307 Stored in directory: /tmp/pip-ephem-wheel-cache-p2n_qfn3/wheels/55/41/c2/f140ce2ddc5edcd3c7db97b6849e430c6413cb47cdc99cd86a 2024-05-08T17:51:25,340 Successfully built scilpy 2024-05-08T17:51:25,409 Removed build tracker: '/tmp/pip-build-tracker-_g293hdc'