2024-05-09T01:20:35,959 Created temporary directory: /tmp/pip-build-tracker-42k7ndom
2024-05-09T01:20:35,960 Initialized build tracking at /tmp/pip-build-tracker-42k7ndom
2024-05-09T01:20:35,961 Created build tracker: /tmp/pip-build-tracker-42k7ndom
2024-05-09T01:20:35,961 Entered build tracker: /tmp/pip-build-tracker-42k7ndom
2024-05-09T01:20:35,961 Created temporary directory: /tmp/pip-wheel-ne91hqys
2024-05-09T01:20:35,965 Created temporary directory: /tmp/pip-ephem-wheel-cache-vmsx8kk8
2024-05-09T01:20:35,989 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-09T01:20:35,992 2 location(s) to search for versions of cyto-dl:
2024-05-09T01:20:35,992 * https://pypi.org/simple/cyto-dl/
2024-05-09T01:20:35,992 * https://www.piwheels.org/simple/cyto-dl/
2024-05-09T01:20:35,993 Fetching project page and analyzing links: https://pypi.org/simple/cyto-dl/
2024-05-09T01:20:35,994 Getting page https://pypi.org/simple/cyto-dl/
2024-05-09T01:20:35,995 Found index url https://pypi.org/simple/
2024-05-09T01:20:36,047 Fetched page https://pypi.org/simple/cyto-dl/ as application/vnd.pypi.simple.v1+json
2024-05-09T01:20:36,051   Found link https://files.pythonhosted.org/packages/2d/ce/accc274a32bba2bda7f6a3b571cff3b352bc9f7265f3979fe2a6071202e6/cyto-dl-0.0.0.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.0.0
2024-05-09T01:20:36,052   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/46/b8/ef1396afb31a4f6f93d4869eb1ed5b8a382e03097e04c4f68b7d25bac065/cyto_dl-0.0.0-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,052   Found link https://files.pythonhosted.org/packages/db/c5/688b199e1350569abdd876695638911f72459fe519569239732db1f79cf2/cyto-dl-0.1.0.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.0
2024-05-09T01:20:36,053   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/d3/a6/648b05e442881231d2207f7ab0d5e772aec94ce137d76f927428f7734627/cyto_dl-0.1.0-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,053   Found link https://files.pythonhosted.org/packages/c8/c3/a44ad991459e7e360db17bf9d396b7ca1efae05c895ab9111611cf95e81a/cyto-dl-0.1.1.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.1
2024-05-09T01:20:36,054   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/cf/53/b1e709e2e304aa5af43e18e6ffd60d52dc6f7a251d75369b527912224b0f/cyto_dl-0.1.1-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,054   Found link https://files.pythonhosted.org/packages/b1/98/cef1b3548480d3313c7eec14db9a058aac7278599f4149b96dfd52269c5c/cyto-dl-0.1.2.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.2
2024-05-09T01:20:36,055   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/5b/76/e5e59b3ee40d33f85df42bc12743199778a27981c454c528476d8c19e92c/cyto_dl-0.1.2-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,055   Found link https://files.pythonhosted.org/packages/1b/60/cbf2eb74445c8456cec413d0e9e2bb8b7122a7ce455a9db9429c4bbcbbc7/cyto-dl-0.1.3.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.3
2024-05-09T01:20:36,056   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/d6/64/ba89cde2d20bd4c6442eda800703c8e74927f37738f70420221e9b19ce22/cyto_dl-0.1.3-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,056   Found link https://files.pythonhosted.org/packages/ef/81/9f96e80abebab3d58b3aa484dfcd1dd4a966ee2dadcbeb74842f2b895f50/cyto-dl-0.1.4.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.4
2024-05-09T01:20:36,057   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/16/ce/c07f77b443a12ad05e1c8aa25e555877383e3375461bed3817b80e2d8b20/cyto_dl-0.1.4-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,057   Found link https://files.pythonhosted.org/packages/50/d9/435f90e4078f1fce33de5806c7c1b69111c0d0a1de6911169caf08d81cc8/cyto-dl-0.1.5.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:<3.11,>=3.8), version: 0.1.5
2024-05-09T01:20:36,058   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/fd/09/912ef3ec2c75290744962da3207150025087ad87e4eeaf07d728408b5fff/cyto_dl-0.1.5-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:<3.11,>=3.8)
2024-05-09T01:20:36,058   Found link https://files.pythonhosted.org/packages/b3/8b/d63a5dc65c4df0fa35663a082ad2746b59b2a2746101c318f826d098fb99/cyto-dl-0.1.6.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:<3.11,>=3.9), version: 0.1.6
2024-05-09T01:20:36,059   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/d5/27/c5b4a24ad2dc763a6990623d703030712681d36ce21f6246a6cfc717b116/cyto_dl-0.1.6-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:<3.11,>=3.9)
2024-05-09T01:20:36,059   Found link https://files.pythonhosted.org/packages/8e/60/5cd0e6c8d7b783abb78388ffaf07ed10db6525a3fcfd26af0dc3a962909b/cyto-dl-0.1.7.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:<3.11,>=3.9), version: 0.1.7
2024-05-09T01:20:36,059   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/90/1c/5f99ded90272728d37184528e0609ce2f17e147cbd1d389ddef367bd9aa5/cyto_dl-0.1.7-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:<3.11,>=3.9)
2024-05-09T01:20:36,060 Fetching project page and analyzing links: https://www.piwheels.org/simple/cyto-dl/
2024-05-09T01:20:36,060 Getting page https://www.piwheels.org/simple/cyto-dl/
2024-05-09T01:20:36,061 Found index url https://www.piwheels.org/simple/
2024-05-09T01:20:36,395 Fetched page https://www.piwheels.org/simple/cyto-dl/ as text/html
2024-05-09T01:20:36,399   Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.6-py3-none-any.whl#sha256=26c53c9ad523c8755ceca91278828ea640c90777be6692540f2cc61bef49d142 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.9,<3.11)
2024-05-09T01:20:36,399   Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.5-py3-none-any.whl#sha256=25d4d66a7854d5b7913c265ee9d01e5f4925979f45a574fa0f05206c870133ff (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,399   Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.4-py3-none-any.whl#sha256=8b1b47e7988caa5dc491c248fafe11fa4fce1552da9c54c2c5ac7cc6e858b065 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,399   Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.3-py3-none-any.whl#sha256=58d3046249f9d44875c1222936983dd04f88ba6bb80346b95c9899582dab7f32 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,400   Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.2-py3-none-any.whl#sha256=4bbf20900a3b936ae82371fa2092a0167cfc89fd98ed75f940aa86e49cbc0fc3 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,400   Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.1-py3-none-any.whl#sha256=36e7c3552a2418bbd9d3527bf01ec6023becd6bd7c3b6d56a46af04ae942fec1 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,400   Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.0-py3-none-any.whl#sha256=7a5e6812050531fde61abdeffd59516819eeb4a6390cdab7ff992200bc2ea3d5 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,400   Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.0.0-py3-none-any.whl#sha256=e2d1c34bc6519ebedf101f589a6e562dac3b2b5a6cc2d61c4f38dc6432bd7695 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-05-09T01:20:36,400 Skipping link: not a file: https://www.piwheels.org/simple/cyto-dl/
2024-05-09T01:20:36,401 Skipping link: not a file: https://pypi.org/simple/cyto-dl/
2024-05-09T01:20:36,417 Given no hashes to check 1 links for project 'cyto-dl': discarding no candidates
2024-05-09T01:20:36,433 Collecting cyto-dl==0.1.7
2024-05-09T01:20:36,435   Created temporary directory: /tmp/pip-unpack-y0kkbn21
2024-05-09T01:20:36,562   Downloading cyto-dl-0.1.7.tar.gz (404 kB)
2024-05-09T01:20:37,176   Added cyto-dl==0.1.7 from https://files.pythonhosted.org/packages/8e/60/5cd0e6c8d7b783abb78388ffaf07ed10db6525a3fcfd26af0dc3a962909b/cyto-dl-0.1.7.tar.gz to build tracker '/tmp/pip-build-tracker-42k7ndom'
2024-05-09T01:20:37,183   Created temporary directory: /tmp/pip-build-env-no6ju3g4
2024-05-09T01:20:37,193   Installing build dependencies: started
2024-05-09T01:20:37,194   Running command pip subprocess to install build dependencies
2024-05-09T01:20:38,390   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-05-09T01:20:38,903   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-09T01:20:40,557   Collecting pdm-pep517>=1.0.0
2024-05-09T01:20:40,618     Downloading https://www.piwheels.org/simple/pdm-pep517/pdm_pep517-1.1.4-py3-none-any.whl (216 kB)
2024-05-09T01:20:40,881        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 216.4/216.4 kB 819.5 kB/s eta 0:00:00
2024-05-09T01:20:41,995   Collecting numpy>=1.23.5
2024-05-09T01:20:42,017     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB)
2024-05-09T01:20:43,676   Installing collected packages: pdm-pep517, numpy
2024-05-09T01:20:52,035     Creating /tmp/pip-build-env-no6ju3g4/overlay/bin
2024-05-09T01:20:52,037     changing mode of /tmp/pip-build-env-no6ju3g4/overlay/bin/f2py to 755
2024-05-09T01:20:52,071   Successfully installed numpy-1.26.4 pdm-pep517-1.1.4
2024-05-09T01:20:52,537   Installing build dependencies: finished with status 'done'
2024-05-09T01:20:52,542   Getting requirements to build wheel: started
2024-05-09T01:20:52,543   Running command Getting requirements to build wheel
2024-05-09T01:20:53,017   Getting requirements to build wheel: finished with status 'done'
2024-05-09T01:20:53,022   Created temporary directory: /tmp/pip-modern-metadata-si68a8zh
2024-05-09T01:20:53,025   Preparing metadata (pyproject.toml): started
2024-05-09T01:20:53,026   Running command Preparing metadata (pyproject.toml)
2024-05-09T01:20:53,455   /tmp/pip-build-env-no6ju3g4/overlay/lib/python3.9/site-packages/pdm/pep517/base.py:384: PDMWarning: 'license' is missing
2024-05-09T01:20:53,455     if meta.license_expression:
2024-05-09T01:20:53,494   /tmp/pip-build-env-no6ju3g4/overlay/lib/python3.9/site-packages/pdm/pep517/api.py:51: PDMWarning: No license files are matched with glob patterns ['LICENSES/*', 'LICEN[CS]E*', 'COPYING*', 'NOTICE*', 'AUTHORS*'].
2024-05-09T01:20:53,495     for license_file in builder.find_license_files():
2024-05-09T01:20:53,530   Preparing metadata (pyproject.toml): finished with status 'done'
2024-05-09T01:20:53,537   Source in /tmp/pip-wheel-ne91hqys/cyto-dl_9ec198b397944287b8c4f5f8b1e05725 has version 0.1.7, which satisfies requirement cyto-dl==0.1.7 from https://files.pythonhosted.org/packages/8e/60/5cd0e6c8d7b783abb78388ffaf07ed10db6525a3fcfd26af0dc3a962909b/cyto-dl-0.1.7.tar.gz
2024-05-09T01:20:53,538   Removed cyto-dl==0.1.7 from https://files.pythonhosted.org/packages/8e/60/5cd0e6c8d7b783abb78388ffaf07ed10db6525a3fcfd26af0dc3a962909b/cyto-dl-0.1.7.tar.gz from build tracker '/tmp/pip-build-tracker-42k7ndom'
2024-05-09T01:20:53,545 Created temporary directory: /tmp/pip-unpack-_dp_z9qh
2024-05-09T01:20:53,546 Created temporary directory: /tmp/pip-unpack-e8sbgpve
2024-05-09T01:20:53,675 Building wheels for collected packages: cyto-dl
2024-05-09T01:20:53,679   Created temporary directory: /tmp/pip-wheel-53wo63k7
2024-05-09T01:20:53,679   Destination directory: /tmp/pip-wheel-53wo63k7
2024-05-09T01:20:53,681   Building wheel for cyto-dl (pyproject.toml): started
2024-05-09T01:20:53,682   Running command Building wheel for cyto-dl (pyproject.toml)
2024-05-09T01:20:54,261    - Adding README.md
2024-05-09T01:20:54,262    - Adding configs/callbacks/default.yaml
2024-05-09T01:20:54,262    - Adding configs/callbacks/early_stopping.yaml
2024-05-09T01:20:54,262    - Adding configs/callbacks/layer_freeze.yaml
2024-05-09T01:20:54,262    - Adding configs/callbacks/learning_rate_monitor.yaml
2024-05-09T01:20:54,262    - Adding configs/callbacks/model_checkpoint.yaml
2024-05-09T01:20:54,262    - Adding configs/callbacks/model_summary.yaml
2024-05-09T01:20:54,263    - Adding configs/callbacks/none.yaml
2024-05-09T01:20:54,263    - Adding configs/callbacks/outlier_detection.yaml
2024-05-09T01:20:54,263    - Adding configs/callbacks/rich_progress_bar.yaml
2024-05-09T01:20:54,263    - Adding configs/compile.yaml
2024-05-09T01:20:54,263    - Adding configs/data/classification/single_timepoint.yaml
2024-05-09T01:20:54,263    - Adding configs/data/im2im/gan.yaml
2024-05-09T01:20:54,263    - Adding configs/data/im2im/gan_superres.yaml
2024-05-09T01:20:54,263    - Adding configs/data/im2im/instance_seg.yaml
2024-05-09T01:20:54,264    - Adding configs/data/im2im/labelfree.yaml
2024-05-09T01:20:54,264    - Adding configs/data/im2im/mae.yaml
2024-05-09T01:20:54,264    - Adding configs/data/im2im/segmentation.yaml
2024-05-09T01:20:54,264    - Adding configs/data/im2im/segmentation_plugin.yaml
2024-05-09T01:20:54,264    - Adding configs/data/im2im/segmentation_superres.yaml
2024-05-09T01:20:54,264    - Adding configs/data/private/lattice_nuc_sdf.yaml
2024-05-09T01:20:54,264    - Adding configs/data/private/rot_mnist.yaml
2024-05-09T01:20:54,264    - Adding configs/data/private/rot_mnist_vae.yaml
2024-05-09T01:20:54,264    - Adding configs/data/private/rotated_mnist.yaml
2024-05-09T01:20:54,265    - Adding configs/data/private/variance_3d.yaml
2024-05-09T01:20:54,265    - Adding configs/data/private/variance_3d_npm1.yaml
2024-05-09T01:20:54,265    - Adding configs/data/private/variance_3d_npm_nuc_v2.yaml
2024-05-09T01:20:54,265    - Adding configs/data/private/variance_3d_rotate.yaml
2024-05-09T01:20:54,265    - Adding configs/data/private/variance_centerslice.yaml
2024-05-09T01:20:54,265    - Adding configs/data/private/variance_centerslice_resize.yaml
2024-05-09T01:20:54,265    - Adding configs/data/private/variance_npm1.yaml
2024-05-09T01:20:54,266    - Adding configs/data/private/variance_spharm.yaml
2024-05-09T01:20:54,266    - Adding configs/data/test/alternating_batch.yaml
2024-05-09T01:20:54,266    - Adding configs/data/test/omnipose.yaml
2024-05-09T01:20:54,266    - Adding configs/data/test/segmentation.yaml
2024-05-09T01:20:54,266    - Adding configs/debug/default.yaml
2024-05-09T01:20:54,266    - Adding configs/debug/fdr.yaml
2024-05-09T01:20:54,266    - Adding configs/debug/limit.yaml
2024-05-09T01:20:54,267    - Adding configs/debug/overfit.yaml
2024-05-09T01:20:54,267    - Adding configs/debug/profiler.yaml
2024-05-09T01:20:54,267    - Adding configs/eval.yaml
2024-05-09T01:20:54,267    - Adding configs/experiment/classification/per_timepoint.yaml
2024-05-09T01:20:54,267    - Adding configs/experiment/im2im/gan.yaml
2024-05-09T01:20:54,267    - Adding configs/experiment/im2im/gan_superres.yaml
2024-05-09T01:20:54,267    - Adding configs/experiment/im2im/instance_seg.yaml
2024-05-09T01:20:54,268    - Adding configs/experiment/im2im/labelfree.yaml
2024-05-09T01:20:54,268    - Adding configs/experiment/im2im/mae.yaml
2024-05-09T01:20:54,268    - Adding configs/experiment/im2im/segmentation.yaml
2024-05-09T01:20:54,268    - Adding configs/experiment/im2im/segmentation_plugin.yaml
2024-05-09T01:20:54,268    - Adding configs/experiment/im2im/segmentation_superres.yaml
2024-05-09T01:20:54,268    - Adding configs/experiment/im2im/vit_segmentation.yaml
2024-05-09T01:20:54,268    - Adding configs/experiment/private/lattice_nuc_sdf.yaml
2024-05-09T01:20:54,269    - Adding configs/experiment/private/mnist_so2.yaml
2024-05-09T01:20:54,269    - Adding configs/experiment/private/npm1_classical_3d_vae.yaml
2024-05-09T01:20:54,269    - Adding configs/experiment/private/npm1_classical_scale_inv.yaml
2024-05-09T01:20:54,269    - Adding configs/experiment/private/npm1_equiv_3d_vae_3dnucalign.yaml
2024-05-09T01:20:54,269    - Adding configs/experiment/private/npm1_scale_inv_canon_so3.yaml
2024-05-09T01:20:54,269    - Adding configs/experiment/private/npm1_so2.yaml
2024-05-09T01:20:54,269    - Adding configs/experiment/private/npm1_so2_scale_inv.yaml
2024-05-09T01:20:54,270    - Adding configs/experiment/private/npm1_so3_scale_inv.yaml
2024-05-09T01:20:54,270    - Adding configs/experiment/private/npm1_so3_vae.yaml
2024-05-09T01:20:54,270    - Adding configs/experiment/private/npm1_so3_vae_seg.yaml
2024-05-09T01:20:54,270    - Adding configs/experiment/private/variance_classical_2d_vae.yaml
2024-05-09T01:20:54,270    - Adding configs/experiment/private/variance_classical_3d_vae.yaml
2024-05-09T01:20:54,270    - Adding configs/experiment/private/variance_so2_3d_vae.yaml
2024-05-09T01:20:54,270    - Adding configs/experiment/private/variance_so2_3d_vae_profiling.yaml
2024-05-09T01:20:54,271    - Adding configs/experiment/private/variance_spharm.yaml
2024-05-09T01:20:54,271    - Adding configs/experiment/private/variance_spharm_o2.yaml
2024-05-09T01:20:54,271    - Adding configs/extras/default.yaml
2024-05-09T01:20:54,271    - Adding configs/hparams_search/mnist_optuna.yaml
2024-05-09T01:20:54,271    - Adding configs/hydra/default.yaml
2024-05-09T01:20:54,271    - Adding configs/logger/comet.yaml
2024-05-09T01:20:54,271    - Adding configs/logger/csv.yaml
2024-05-09T01:20:54,272    - Adding configs/logger/many_loggers.yaml
2024-05-09T01:20:54,272    - Adding configs/logger/mlflow.yaml
2024-05-09T01:20:54,272    - Adding configs/logger/neptune.yaml
2024-05-09T01:20:54,272    - Adding configs/logger/tensorboard.yaml
2024-05-09T01:20:54,272    - Adding configs/logger/wandb.yaml
2024-05-09T01:20:54,272    - Adding configs/model/classification/single_timepoint.yaml
2024-05-09T01:20:54,272    - Adding configs/model/im2im/gan.yaml
2024-05-09T01:20:54,273    - Adding configs/model/im2im/gan_superres.yaml
2024-05-09T01:20:54,273    - Adding configs/model/im2im/instance_seg.yaml
2024-05-09T01:20:54,273    - Adding configs/model/im2im/labelfree.yaml
2024-05-09T01:20:54,273    - Adding configs/model/im2im/mae.yaml
2024-05-09T01:20:54,273    - Adding configs/model/im2im/segmentation.yaml
2024-05-09T01:20:54,273    - Adding configs/model/im2im/segmentation_plugin.yaml
2024-05-09T01:20:54,273    - Adding configs/model/im2im/segmentation_superres.yaml
2024-05-09T01:20:54,274    - Adding configs/model/im2im/vit_segmentation_decoder.yaml
2024-05-09T01:20:54,274    - Adding configs/model/private/classical_image_ae.yaml
2024-05-09T01:20:54,274    - Adding configs/model/private/classical_image_vae.yaml
2024-05-09T01:20:54,274    - Adding configs/model/private/reconstruction_loss/spharm_gaussian.yaml
2024-05-09T01:20:54,274    - Adding configs/model/private/reconstruction_loss/spharm_loss.yaml
2024-05-09T01:20:54,274    - Adding configs/model/private/reconstruction_loss/spharm_mse.yaml
2024-05-09T01:20:54,274    - Adding configs/model/private/reconstruction_loss/spharm_weighted_mse.yaml
2024-05-09T01:20:54,275    - Adding configs/model/private/so3_canon_image_vae.yaml
2024-05-09T01:20:54,275    - Adding configs/model/private/so3_equiv_image_vae.yaml
2024-05-09T01:20:54,275    - Adding configs/model/private/spharm.yaml
2024-05-09T01:20:54,275    - Adding configs/model/private/spharm_so2.yaml
2024-05-09T01:20:54,275    - Adding configs/model/test/base.yaml
2024-05-09T01:20:54,275    - Adding configs/model/test/simple_segmentation.yaml
2024-05-09T01:20:54,275    - Adding configs/paths/default.yaml
2024-05-09T01:20:54,276    - Adding configs/train.yaml
2024-05-09T01:20:54,276    - Adding configs/trainer/cpu.yaml
2024-05-09T01:20:54,276    - Adding configs/trainer/ddp.yaml
2024-05-09T01:20:54,276    - Adding configs/trainer/ddp_sim.yaml
2024-05-09T01:20:54,276    - Adding configs/trainer/default.yaml
2024-05-09T01:20:54,276    - Adding configs/trainer/gpu.yaml
2024-05-09T01:20:54,276    - Adding configs/trainer/mps.yaml
2024-05-09T01:20:54,277    - Adding cyto_dl/__init__.py
2024-05-09T01:20:54,277    - Adding cyto_dl/api/__init__.py
2024-05-09T01:20:54,277    - Adding cyto_dl/api/cyto_dl_model/__init__.py
2024-05-09T01:20:54,277    - Adding cyto_dl/api/cyto_dl_model/cyto_dl_base_model.py
2024-05-09T01:20:54,277    - Adding cyto_dl/api/cyto_dl_model/segmentation_plugin_model.py
2024-05-09T01:20:54,277    - Adding cyto_dl/api/data.py
2024-05-09T01:20:54,277    - Adding cyto_dl/api/model.py
2024-05-09T01:20:54,278    - Adding cyto_dl/callbacks/__init__.py
2024-05-09T01:20:54,278    - Adding cyto_dl/callbacks/callback_utils.py
2024-05-09T01:20:54,278    - Adding cyto_dl/callbacks/latent_walk.py
2024-05-09T01:20:54,278    - Adding cyto_dl/callbacks/layer_freeze.py
2024-05-09T01:20:54,278    - Adding cyto_dl/callbacks/model_utils.py
2024-05-09T01:20:54,278    - Adding cyto_dl/callbacks/outlier_detection.py
2024-05-09T01:20:54,278    - Adding cyto_dl/compile.py
2024-05-09T01:20:54,279    - Adding cyto_dl/dataframe/__init__.py
2024-05-09T01:20:54,279    - Adding cyto_dl/dataframe/readers.py
2024-05-09T01:20:54,279    - Adding cyto_dl/dataframe/transforms/__init__.py
2024-05-09T01:20:54,279    - Adding cyto_dl/dataframe/transforms/filter.py
2024-05-09T01:20:54,279    - Adding cyto_dl/dataframe/transforms/group_cols.py
2024-05-09T01:20:54,279    - Adding cyto_dl/dataframe/transforms/misc.py
2024-05-09T01:20:54,279    - Adding cyto_dl/dataframe/transforms/split.py
2024-05-09T01:20:54,279    - Adding cyto_dl/datamodules/__init__.py
2024-05-09T01:20:54,280    - Adding cyto_dl/datamodules/czi.py
2024-05-09T01:20:54,280    - Adding cyto_dl/datamodules/data_dict.py
2024-05-09T01:20:54,280    - Adding cyto_dl/datamodules/dataframe/__init__.py
2024-05-09T01:20:54,280    - Adding cyto_dl/datamodules/dataframe/dataframe_datamodule.py
2024-05-09T01:20:54,280    - Adding cyto_dl/datamodules/dataframe/grouped_dataframe_datamodule.py
2024-05-09T01:20:54,280    - Adding cyto_dl/datamodules/dataframe/utils.py
2024-05-09T01:20:54,280    - Adding cyto_dl/datamodules/folder.py
2024-05-09T01:20:54,281    - Adding cyto_dl/datamodules/smartcache.py
2024-05-09T01:20:54,281    - Adding cyto_dl/datamodules/torchvision.py
2024-05-09T01:20:54,281    - Adding cyto_dl/eval.py
2024-05-09T01:20:54,281    - Adding cyto_dl/image/__init__.py
2024-05-09T01:20:54,281    - Adding cyto_dl/image/io/__init__.py
2024-05-09T01:20:54,281    - Adding cyto_dl/image/io/aicsimage_loader.py
2024-05-09T01:20:54,281    - Adding cyto_dl/image/io/monai_bio_reader.py
2024-05-09T01:20:54,282    - Adding cyto_dl/image/io/numpy_reader.py
2024-05-09T01:20:54,282    - Adding cyto_dl/image/io/ome_zarr_reader.py
2024-05-09T01:20:54,282    - Adding cyto_dl/image/io/polygon_loader.py
2024-05-09T01:20:54,282    - Adding cyto_dl/image/io/skimage_reader.py
2024-05-09T01:20:54,282    - Adding cyto_dl/image/transforms/__init__.py
2024-05-09T01:20:54,282    - Adding cyto_dl/image/transforms/bright_sampler.py
2024-05-09T01:20:54,282    - Adding cyto_dl/image/transforms/clip.py
2024-05-09T01:20:54,283    - Adding cyto_dl/image/transforms/contrastadjust.py
2024-05-09T01:20:54,283    - Adding cyto_dl/image/transforms/merge.py
2024-05-09T01:20:54,283    - Adding cyto_dl/image/transforms/multiscale_cropper.py
2024-05-09T01:20:54,283    - Adding cyto_dl/image/transforms/pad.py
2024-05-09T01:20:54,283    - Adding cyto_dl/image/transforms/project.py
2024-05-09T01:20:54,283    - Adding cyto_dl/image/transforms/rotation_mask_transform.py
2024-05-09T01:20:54,283    - Adding cyto_dl/image/transforms/save.py
2024-05-09T01:20:54,284    - Adding cyto_dl/image/transforms/so2_random_rotation.py
2024-05-09T01:20:54,284    - Adding cyto_dl/image/transforms/track_transforms.py
2024-05-09T01:20:54,284    - Adding cyto_dl/loggers/__init__.py
2024-05-09T01:20:54,284    - Adding cyto_dl/loggers/mlflow.py
2024-05-09T01:20:54,284    - Adding cyto_dl/models/__init__.py
2024-05-09T01:20:54,284    - Adding cyto_dl/models/base_model.py
2024-05-09T01:20:54,284    - Adding cyto_dl/models/basic_model.py
2024-05-09T01:20:54,284    - Adding cyto_dl/models/classification/__init__.py
2024-05-09T01:20:54,285    - Adding cyto_dl/models/classification/classification.py
2024-05-09T01:20:54,285    - Adding cyto_dl/models/classification/timepoint_classification.py
2024-05-09T01:20:54,285    - Adding cyto_dl/models/handlers/__init__.py
2024-05-09T01:20:54,573    - Adding cyto_dl/models/handlers/base_handler.py
2024-05-09T01:20:54,573    - Adding cyto_dl/models/handlers/image_handler.py
2024-05-09T01:20:54,573    - Adding cyto_dl/models/handlers/load_image_patch.py
2024-05-09T01:20:54,574    - Adding cyto_dl/models/im2im/__init__.py
2024-05-09T01:20:54,574    - Adding cyto_dl/models/im2im/gan.py
2024-05-09T01:20:54,574    - Adding cyto_dl/models/im2im/multi_task.py
2024-05-09T01:20:54,574    - Adding cyto_dl/models/im2im/utils/__init__.py
2024-05-09T01:20:54,575    - Adding cyto_dl/models/im2im/utils/instance_seg.py
2024-05-09T01:20:54,575    - Adding cyto_dl/models/im2im/utils/noise_annealer.py
2024-05-09T01:20:54,575    - Adding cyto_dl/models/im2im/utils/postprocessing/__init__.py
2024-05-09T01:20:54,575    - Adding cyto_dl/models/im2im/utils/postprocessing/act_thresh_label.py
2024-05-09T01:20:54,576    - Adding cyto_dl/models/im2im/utils/postprocessing/auto_thresh.py
2024-05-09T01:20:54,576    - Adding cyto_dl/models/im2im/utils/postprocessing/dict_to_im.py
2024-05-09T01:20:54,576    - Adding cyto_dl/models/utils/__init__.py
2024-05-09T01:20:54,576    - Adding cyto_dl/models/utils/mlflow.py
2024-05-09T01:20:54,576    - Adding cyto_dl/models/utils/utils.py
2024-05-09T01:20:54,577    - Adding cyto_dl/models/vae/__init__.py
2024-05-09T01:20:54,577    - Adding cyto_dl/models/vae/base_vae.py
2024-05-09T01:20:54,577    - Adding cyto_dl/models/vae/image_canon_vae.py
2024-05-09T01:20:54,577    - Adding cyto_dl/models/vae/image_encoder.py
2024-05-09T01:20:54,578    - Adding cyto_dl/models/vae/image_vae.py
2024-05-09T01:20:54,578    - Adding cyto_dl/models/vae/latent_loss_vae.py
2024-05-09T01:20:54,578    - Adding cyto_dl/models/vae/o2_spharm_vae/__init__.py
2024-05-09T01:20:54,578    - Adding cyto_dl/models/vae/o2_spharm_vae/o2_spharm_encoder.py
2024-05-09T01:20:54,578    - Adding cyto_dl/models/vae/o2_spharm_vae/o2_spharm_vae.py
2024-05-09T01:20:54,579    - Adding cyto_dl/models/vae/point_cloud_vae.py
2024-05-09T01:20:54,579    - Adding cyto_dl/models/vae/priors/__init__.py
2024-05-09T01:20:54,579    - Adding cyto_dl/models/vae/priors/abstract_prior.py
2024-05-09T01:20:54,579    - Adding cyto_dl/models/vae/priors/gaussian.py
2024-05-09T01:20:54,579    - Adding cyto_dl/models/vae/priors/identity_prior.py
2024-05-09T01:20:54,580    - Adding cyto_dl/models/vae/priors/joint_prior.py
2024-05-09T01:20:54,580    - Adding cyto_dl/models/vae/tabular_vae.py
2024-05-09T01:20:54,580    - Adding cyto_dl/nn/__init__.py
2024-05-09T01:20:54,580    - Adding cyto_dl/nn/discriminators/__init__.py
2024-05-09T01:20:54,580    - Adding cyto_dl/nn/discriminators/multi_scale_discriminator.py
2024-05-09T01:20:54,581    - Adding cyto_dl/nn/discriminators/n_layer_discriminator.py
2024-05-09T01:20:54,581    - Adding cyto_dl/nn/head/__init__.py
2024-05-09T01:20:54,581    - Adding cyto_dl/nn/head/base_head.py
2024-05-09T01:20:54,581    - Adding cyto_dl/nn/head/gan_head.py
2024-05-09T01:20:54,581    - Adding cyto_dl/nn/head/gan_head_superres.py
2024-05-09T01:20:54,582    - Adding cyto_dl/nn/head/mae_head.py
2024-05-09T01:20:54,582    - Adding cyto_dl/nn/head/mask_head.py
2024-05-09T01:20:54,582    - Adding cyto_dl/nn/head/res_blocks_head.py
2024-05-09T01:20:54,582    - Adding cyto_dl/nn/hr_skip.py
2024-05-09T01:20:54,583    - Adding cyto_dl/nn/losses/__init__.py
2024-05-09T01:20:54,583    - Adding cyto_dl/nn/losses/adversarial_loss.py
2024-05-09T01:20:54,583    - Adding cyto_dl/nn/losses/chamfer_loss.py
2024-05-09T01:20:54,583    - Adding cyto_dl/nn/losses/continuous_bernoulli.py
2024-05-09T01:20:54,583    - Adding cyto_dl/nn/losses/cosine_loss.py
2024-05-09T01:20:54,583    - Adding cyto_dl/nn/losses/gan_loss.py
2024-05-09T01:20:54,583    - Adding cyto_dl/nn/losses/gaussian_nll_loss.py
2024-05-09T01:20:54,584    - Adding cyto_dl/nn/losses/geomloss.py
2024-05-09T01:20:54,584    - Adding cyto_dl/nn/losses/loss_wrapper.py
2024-05-09T01:20:54,584    - Adding cyto_dl/nn/losses/spharm_loss.py
2024-05-09T01:20:54,584    - Adding cyto_dl/nn/losses/threshold_loss.py
2024-05-09T01:20:54,585    - Adding cyto_dl/nn/losses/weibull.py
2024-05-09T01:20:54,585    - Adding cyto_dl/nn/losses/weighted_mse_loss.py
2024-05-09T01:20:54,585    - Adding cyto_dl/nn/mlp.py
2024-05-09T01:20:54,585    - Adding cyto_dl/nn/point_cloud/__init__.py
2024-05-09T01:20:54,585    - Adding cyto_dl/nn/point_cloud/dgcnn.py
2024-05-09T01:20:54,586    - Adding cyto_dl/nn/point_cloud/folding_net.py
2024-05-09T01:20:54,586    - Adding cyto_dl/nn/point_cloud/graph_functions.py
2024-05-09T01:20:54,586    - Adding cyto_dl/nn/point_cloud/vnn.py
2024-05-09T01:20:54,586    - Adding cyto_dl/nn/res_unit.py
2024-05-09T01:20:54,587    - Adding cyto_dl/nn/spatial_transformer.py
2024-05-09T01:20:54,587    - Adding cyto_dl/nn/track_sequence_predictor.py
2024-05-09T01:20:54,587    - Adding cyto_dl/nn/vits/__init__.py
2024-05-09T01:20:54,587    - Adding cyto_dl/nn/vits/blocks/__init__.py
2024-05-09T01:20:54,588    - Adding cyto_dl/nn/vits/blocks/cross_attention.py
2024-05-09T01:20:54,588    - Adding cyto_dl/nn/vits/blocks/intermediate_weigher.py
2024-05-09T01:20:54,588    - Adding cyto_dl/nn/vits/blocks/patchify.py
2024-05-09T01:20:54,588    - Adding cyto_dl/nn/vits/cross_mae.py
2024-05-09T01:20:54,588    - Adding cyto_dl/nn/vits/mae.py
2024-05-09T01:20:54,589    - Adding cyto_dl/nn/vits/seg.py
2024-05-09T01:20:54,589    - Adding cyto_dl/nn/vits/utils.py
2024-05-09T01:20:54,589    - Adding cyto_dl/point_cloud/__init__.py
2024-05-09T01:20:54,589    - Adding cyto_dl/point_cloud/io/__init__.py
2024-05-09T01:20:54,590    - Adding cyto_dl/point_cloud/io/read_pcloud.py
2024-05-09T01:20:54,590    - Adding cyto_dl/train.py
2024-05-09T01:20:54,590    - Adding cyto_dl/utils/__init__.py
2024-05-09T01:20:54,590    - Adding cyto_dl/utils/config.py
2024-05-09T01:20:54,591    - Adding cyto_dl/utils/download_test_data.py
2024-05-09T01:20:54,591    - Adding cyto_dl/utils/dummy_dataset.py
2024-05-09T01:20:54,591    - Adding cyto_dl/utils/pylogger.py
2024-05-09T01:20:54,591    - Adding cyto_dl/utils/rich_utils.py
2024-05-09T01:20:54,592    - Adding cyto_dl/utils/rotation.py
2024-05-09T01:20:54,592    - Adding cyto_dl/utils/spharm/__init__.py
2024-05-09T01:20:54,592    - Adding cyto_dl/utils/spharm/reconstruction.py
2024-05-09T01:20:54,592    - Adding cyto_dl/utils/spharm/rotation.py
2024-05-09T01:20:54,592    - Adding cyto_dl/utils/template_utils.py
2024-05-09T01:20:54,592    - Adding tests/api/cyto_dl_model/bad_config.yaml
2024-05-09T01:20:54,593    - Adding cyto_dl-0.1.7.dist-info/METADATA
2024-05-09T01:20:54,593    - Adding cyto_dl-0.1.7.dist-info/WHEEL
2024-05-09T01:20:54,611   Building wheel for cyto-dl (pyproject.toml): finished with status 'done'
2024-05-09T01:20:54,618   Created wheel for cyto-dl: filename=cyto_dl-0.1.7-py3-none-any.whl size=255084 sha256=9f2ce03bf29316206871217005820489c0ccc19f7719f8fb56570b263b0615a4
2024-05-09T01:20:54,619   Stored in directory: /tmp/pip-ephem-wheel-cache-vmsx8kk8/wheels/21/d5/a3/f8076b724f69257591941bb541c6fe7cb3fd9190067605d27e
2024-05-09T01:20:54,640 Successfully built cyto-dl
2024-05-09T01:20:54,649 Removed build tracker: '/tmp/pip-build-tracker-42k7ndom'