2024-05-09T20:44:49,885 Created temporary directory: /tmp/pip-build-tracker-sxx9dw7m
2024-05-09T20:44:49,887 Initialized build tracking at /tmp/pip-build-tracker-sxx9dw7m
2024-05-09T20:44:49,887 Created build tracker: /tmp/pip-build-tracker-sxx9dw7m
2024-05-09T20:44:49,887 Entered build tracker: /tmp/pip-build-tracker-sxx9dw7m
2024-05-09T20:44:49,888 Created temporary directory: /tmp/pip-wheel-qn6fmzm2
2024-05-09T20:44:49,892 Created temporary directory: /tmp/pip-ephem-wheel-cache-4_ayxo83
2024-05-09T20:44:49,915 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-09T20:44:49,919 2 location(s) to search for versions of cryodrgn:
2024-05-09T20:44:49,919 * https://pypi.org/simple/cryodrgn/
2024-05-09T20:44:49,919 * https://www.piwheels.org/simple/cryodrgn/
2024-05-09T20:44:49,919 Fetching project page and analyzing links: https://pypi.org/simple/cryodrgn/
2024-05-09T20:44:49,920 Getting page https://pypi.org/simple/cryodrgn/
2024-05-09T20:44:49,922 Found index url https://pypi.org/simple/
2024-05-09T20:44:49,974 Fetched page https://pypi.org/simple/cryodrgn/ as application/vnd.pypi.simple.v1+json
2024-05-09T20:44:49,979   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/50/91/1306b78002812cfa9932e2691070f765b75d4385e4bbf559d211a4e71025/cryodrgn-1.1.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:49,980   Found link https://files.pythonhosted.org/packages/24/08/8de601e5f4fe8a5177c4191c0be1848d2952dad0ef149820aadadbee2e08/cryodrgn-1.1.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 1.1.1
2024-05-09T20:44:49,980   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/e9/78/bdf1fd8d9394a0025206a4d1478b21170d7392e35132522c5ef87855fe73/cryodrgn-2.1.0b5-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:49,981   Found link https://files.pythonhosted.org/packages/68/26/6669e39abe77e36bd49d1f21f68ed04961bdd0a76f909b497c96ce78b60b/cryodrgn-2.1.0b5.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.1.0b5
2024-05-09T20:44:49,981   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7d/d8/dae369c30a1b908f5713f7b46f4948aed0253f9e7e124c98e6c7b15d7e57/cryodrgn-2.2.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:49,982   Found link https://files.pythonhosted.org/packages/6f/19/b950e5eb7a6d3c8d122bec56e59c447d3585a660a7605112a5346816014e/cryodrgn-2.2.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0b0
2024-05-09T20:44:49,982   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/6d/79/97a3f0118ef0c156bf5eaf931f4a5855a5c5d27dedd04aaa0bcf57fe1f7c/cryodrgn-2.2.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:49,983   Found link https://files.pythonhosted.org/packages/03/50/3259e1a4efc92c945d1ae88fd5765a0ba4db77f0a742fc0e0a206cd781ac/cryodrgn-2.2.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0
2024-05-09T20:44:49,983   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/03/29/f9750c89414937c8700d9d5aa167d9ed1e3157ebb6a9971effb4bcbe8bec/cryodrgn-2.3.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:49,983   Found link https://files.pythonhosted.org/packages/d2/69/c5d8c6da2da86575a985307f67f214a0f56a7f79d73492a5184170ea7036/cryodrgn-2.3.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.3.0
2024-05-09T20:44:49,984   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/08/8d/d0ff2954b5825e3b771a943b40423d57195aec5c30d4b770250ac822c7fe/cryodrgn-3.0.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:49,984   Found link https://files.pythonhosted.org/packages/74/92/6ca0ee245ed52438a0f471cfb29de766b9822010f760da08875be946e827/cryodrgn-3.0.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.0b0
2024-05-09T20:44:49,984   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/ec/e4/6ed8adf3e7b526a69e850b7e5d1b7f6fceede2b3683b35c81944321149a7/cryodrgn-3.0.1b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:49,985   Found link https://files.pythonhosted.org/packages/9d/05/4215fddb0e1cce3525690435efa36cef19ad50c1808b1d48771ea3b7ff37/cryodrgn-3.0.1b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.1b0
2024-05-09T20:44:49,985   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/f4/5b/054660b4368ce3eaf45f8301c941cf2e5ee0ba92b1f76dd1503c64d9d156/cryodrgn-3.1.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:49,986   Found link https://files.pythonhosted.org/packages/fa/81/02d79980623ec3e72fe0a381ab2953b96b71bcd81937ff54943dd2c85054/cryodrgn-3.1.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.1.0b0
2024-05-09T20:44:49,986   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7b/90/4d4442c4ef959de675c6815995a483c1da8c840ce73da4a2208463548db7/cryodrgn-3.2.0a0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-05-09T20:44:49,987   Found link https://files.pythonhosted.org/packages/f2/8b/00d75ab0c8fb63f1bf59c2322d38b3e63c79882cfc9071792af0800b9c8c/cryodrgn-3.2.0a0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0a0
2024-05-09T20:44:49,987   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/06/24/d655857f07fcb5600f36cec129e365e86492b0a97de029b99f3d83615f5d/cryodrgn-3.2.0a1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-05-09T20:44:49,988   Found link https://files.pythonhosted.org/packages/3d/7e/6f69becd5004ad87380939fd7438a730a9a723a76012e918731f58e8355c/cryodrgn-3.2.0a1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0a1
2024-05-09T20:44:49,988   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/f6/33/67c3f1227b7798d9cade4a14dd8a16aaa0d537531f6e41d9d11b30c2895c/cryodrgn-3.2.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-05-09T20:44:49,989   Found link https://files.pythonhosted.org/packages/d8/29/f6b3a3cb3463d56218319de48999e2cc281499e3afa8505f495ac1d4c201/cryodrgn-3.2.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0b0
2024-05-09T20:44:49,989   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/8c/8b/d004a4dc6b3825ee4a87d39d1045b34796bbcbbc54bbe5b482f65bac1f6c/cryodrgn-3.3.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-05-09T20:44:49,989   Found link https://files.pythonhosted.org/packages/8c/10/8dd0c198e9d986f1e36223c0238383b7ca634ad291169161d9837f811507/cryodrgn-3.3.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 3.3.0
2024-05-09T20:44:49,990   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/18/25/05730115709d6be465fbf4244c80bcaa30358b2d5ddaa5f513f12d324db0/cryodrgn-3.3.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-05-09T20:44:49,990   Found link https://files.pythonhosted.org/packages/18/9a/1d5ddedf2a40765bf9050569ae86865b7567931278e33118f3780f3efaf3/cryodrgn-3.3.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 3.3.1
2024-05-09T20:44:49,991 Fetching project page and analyzing links: https://www.piwheels.org/simple/cryodrgn/
2024-05-09T20:44:49,991 Getting page https://www.piwheels.org/simple/cryodrgn/
2024-05-09T20:44:49,992 Found index url https://www.piwheels.org/simple/
2024-05-09T20:44:50,210 Fetched page https://www.piwheels.org/simple/cryodrgn/ as text/html
2024-05-09T20:44:50,217   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.3.0-py3-none-any.whl#sha256=8aae2a2c492aa891d21c236a7fbf48e454224d80748853e92d58f624f2bee91a (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9)
2024-05-09T20:44:50,217   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0b0-py3-none-any.whl#sha256=9be035b539a141bdf9a3a5e223ab2d5eac88e2e8342e4fbdf2aa106b91dd220b (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-05-09T20:44:50,218   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0a1-py3-none-any.whl#sha256=a23e8245ce860c4122cef6f81db6fe3918ab253dab52b10afd0e4f65d9428b3e (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-05-09T20:44:50,218   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0a0-py3-none-any.whl#sha256=ea2d2f810968f04912365abdce1cf74f011e1b5be2b671a741a705ef827f2d4a (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7)
2024-05-09T20:44:50,218   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.1.0b0-py3-none-any.whl#sha256=929d0ff6af693745b3d438a6e7462cc2845e60d49457cd383b6b17b01778017c (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:50,218   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.0.1b0-py3-none-any.whl#sha256=c5aa67408ca576f776a9b8a331b966eb87343cb2d3713e29768705555e85f930 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:50,219   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.0.0b0-py3-none-any.whl#sha256=498fba8644092d42d124e88b81d7209e358d25ea05720b664bd44c454eb221a2 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:50,219   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.3.0-py3-none-any.whl#sha256=d3f519ed4819eac7456ccee2c974e41070b80d0e895797cf940ea8b8ca729631 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:50,219   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0-py3-none-any.whl#sha256=6d705695a229d236db29c0b847f18e336bc53358ef3bc125cb158bd743f53bc9 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:50,220   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0b0-py3-none-any.whl#sha256=ded8ccf2e343961488fc50ee73479e8c5a9bc61dd79a83f509f96e86c01e9306 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:50,220   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.1.0b5-py3-none-any.whl#sha256=f43221397e48ac64c02c3009e927ea1212a8ad59ed1e20421a65287c9e853652 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:50,220   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-1.1.1-py3-none-any.whl#sha256=b3cc3928fe1cc0f347265449cd329a61f3b7eadb9f833c26748b681c220cb4ad (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2024-05-09T20:44:50,221 Skipping link: not a file: https://www.piwheels.org/simple/cryodrgn/
2024-05-09T20:44:50,221 Skipping link: not a file: https://pypi.org/simple/cryodrgn/
2024-05-09T20:44:50,248 Given no hashes to check 1 links for project 'cryodrgn': discarding no candidates
2024-05-09T20:44:50,273 Collecting cryodrgn==3.3.1
2024-05-09T20:44:50,276   Created temporary directory: /tmp/pip-unpack-0enh8ijw
2024-05-09T20:44:50,416   Downloading cryodrgn-3.3.1.tar.gz (37.4 MB)
2024-05-09T20:44:59,669   Added cryodrgn==3.3.1 from https://files.pythonhosted.org/packages/18/9a/1d5ddedf2a40765bf9050569ae86865b7567931278e33118f3780f3efaf3/cryodrgn-3.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-sxx9dw7m'
2024-05-09T20:44:59,675   Created temporary directory: /tmp/pip-build-env-aqwqeet_
2024-05-09T20:44:59,685   Installing build dependencies: started
2024-05-09T20:44:59,686   Running command pip subprocess to install build dependencies
2024-05-09T20:45:00,844   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-05-09T20:45:01,365   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-09T20:45:04,214   Collecting setuptools>=61.0
2024-05-09T20:45:04,423     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB)
2024-05-09T20:45:04,802   Collecting setuptools_scm>=6.2
2024-05-09T20:45:04,911     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB)
2024-05-09T20:45:05,312   Collecting packaging>=20 (from setuptools_scm>=6.2)
2024-05-09T20:45:05,355     Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB)
2024-05-09T20:45:05,596   Collecting typing-extensions (from setuptools_scm>=6.2)
2024-05-09T20:45:05,646     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.11.0-py3-none-any.whl (34 kB)
2024-05-09T20:45:06,611   Collecting tomli>=1 (from setuptools_scm>=6.2)
2024-05-09T20:45:06,692     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-05-09T20:45:08,414   Installing collected packages: typing-extensions, tomli, setuptools, packaging, setuptools_scm
2024-05-09T20:45:13,853   Successfully installed packaging-24.0 setuptools-69.5.1 setuptools_scm-8.1.0 tomli-2.0.1 typing-extensions-4.11.0
2024-05-09T20:45:14,309   Installing build dependencies: finished with status 'done'
2024-05-09T20:45:14,317   Getting requirements to build wheel: started
2024-05-09T20:45:14,318   Running command Getting requirements to build wheel
2024-05-09T20:45:15,248   running egg_info
2024-05-09T20:45:15,254   writing cryodrgn.egg-info/PKG-INFO
2024-05-09T20:45:15,261   writing dependency_links to cryodrgn.egg-info/dependency_links.txt
2024-05-09T20:45:15,263   writing entry points to cryodrgn.egg-info/entry_points.txt
2024-05-09T20:45:15,267   writing requirements to cryodrgn.egg-info/requires.txt
2024-05-09T20:45:15,268   writing top-level names to cryodrgn.egg-info/top_level.txt
2024-05-09T20:45:15,318   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-05-09T20:45:15,326   reading manifest file 'cryodrgn.egg-info/SOURCES.txt'
2024-05-09T20:45:15,336   reading manifest template 'MANIFEST.in'
2024-05-09T20:45:15,338   adding license file 'LICENSE.txt'
2024-05-09T20:45:15,351   writing manifest file 'cryodrgn.egg-info/SOURCES.txt'
2024-05-09T20:45:15,461   Getting requirements to build wheel: finished with status 'done'
2024-05-09T20:45:15,475   Installing backend dependencies: started
2024-05-09T20:45:15,476   Running command pip subprocess to install backend dependencies
2024-05-09T20:45:17,473   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-05-09T20:45:19,375   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-09T20:45:20,169   Collecting wheel
2024-05-09T20:45:20,213     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-05-09T20:45:24,003   Installing collected packages: wheel
2024-05-09T20:45:24,232     Creating /tmp/pip-build-env-aqwqeet_/normal/bin
2024-05-09T20:45:24,234     changing mode of /tmp/pip-build-env-aqwqeet_/normal/bin/wheel to 755
2024-05-09T20:45:24,248   Successfully installed wheel-0.43.0
2024-05-09T20:45:24,658   Installing backend dependencies: finished with status 'done'
2024-05-09T20:45:24,660   Created temporary directory: /tmp/pip-modern-metadata-3f5spai3
2024-05-09T20:45:24,663   Preparing metadata (pyproject.toml): started
2024-05-09T20:45:24,664   Running command Preparing metadata (pyproject.toml)
2024-05-09T20:45:25,599   running dist_info
2024-05-09T20:45:25,605   creating /tmp/pip-modern-metadata-3f5spai3/cryodrgn.egg-info
2024-05-09T20:45:25,611   writing /tmp/pip-modern-metadata-3f5spai3/cryodrgn.egg-info/PKG-INFO
2024-05-09T20:45:25,620   writing dependency_links to /tmp/pip-modern-metadata-3f5spai3/cryodrgn.egg-info/dependency_links.txt
2024-05-09T20:45:25,622   writing entry points to /tmp/pip-modern-metadata-3f5spai3/cryodrgn.egg-info/entry_points.txt
2024-05-09T20:45:25,626   writing requirements to /tmp/pip-modern-metadata-3f5spai3/cryodrgn.egg-info/requires.txt
2024-05-09T20:45:25,627   writing top-level names to /tmp/pip-modern-metadata-3f5spai3/cryodrgn.egg-info/top_level.txt
2024-05-09T20:45:25,628   writing manifest file '/tmp/pip-modern-metadata-3f5spai3/cryodrgn.egg-info/SOURCES.txt'
2024-05-09T20:45:25,688   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-05-09T20:45:25,697   reading manifest file '/tmp/pip-modern-metadata-3f5spai3/cryodrgn.egg-info/SOURCES.txt'
2024-05-09T20:45:25,700   reading manifest template 'MANIFEST.in'
2024-05-09T20:45:25,702   adding license file 'LICENSE.txt'
2024-05-09T20:45:25,708   writing manifest file '/tmp/pip-modern-metadata-3f5spai3/cryodrgn.egg-info/SOURCES.txt'
2024-05-09T20:45:25,709   creating '/tmp/pip-modern-metadata-3f5spai3/cryodrgn-3.3.1.dist-info'
2024-05-09T20:45:25,882   Preparing metadata (pyproject.toml): finished with status 'done'
2024-05-09T20:45:25,890   Source in /tmp/pip-wheel-qn6fmzm2/cryodrgn_a16b4edb54514c858168768df026a3a6 has version 3.3.1, which satisfies requirement cryodrgn==3.3.1 from https://files.pythonhosted.org/packages/18/9a/1d5ddedf2a40765bf9050569ae86865b7567931278e33118f3780f3efaf3/cryodrgn-3.3.1.tar.gz
2024-05-09T20:45:25,891   Removed cryodrgn==3.3.1 from https://files.pythonhosted.org/packages/18/9a/1d5ddedf2a40765bf9050569ae86865b7567931278e33118f3780f3efaf3/cryodrgn-3.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-sxx9dw7m'
2024-05-09T20:45:25,900 Created temporary directory: /tmp/pip-unpack-9vezrqs8
2024-05-09T20:45:25,901 Created temporary directory: /tmp/pip-unpack-teip04xn
2024-05-09T20:45:25,945 Building wheels for collected packages: cryodrgn
2024-05-09T20:45:26,313   Created temporary directory: /tmp/pip-wheel-uw798l66
2024-05-09T20:45:26,313   Destination directory: /tmp/pip-wheel-uw798l66
2024-05-09T20:45:26,315   Building wheel for cryodrgn (pyproject.toml): started
2024-05-09T20:45:26,316   Running command Building wheel for cryodrgn (pyproject.toml)
2024-05-09T20:45:32,807   running bdist_wheel
2024-05-09T20:45:32,857   running build
2024-05-09T20:45:32,857   running build_py
2024-05-09T20:45:32,869   creating build
2024-05-09T20:45:32,870   creating build/lib
2024-05-09T20:45:32,874   creating build/lib/cryodrgn
2024-05-09T20:45:32,875   copying cryodrgn/config.py -> build/lib/cryodrgn
2024-05-09T20:45:32,877   copying cryodrgn/make_healpy.py -> build/lib/cryodrgn
2024-05-09T20:45:32,879   copying cryodrgn/ctf.py -> build/lib/cryodrgn
2024-05-09T20:45:32,881   copying cryodrgn/fft.py -> build/lib/cryodrgn
2024-05-09T20:45:32,883   copying cryodrgn/mrc.py -> build/lib/cryodrgn
2024-05-09T20:45:32,887   copying cryodrgn/lie_tools.py -> build/lib/cryodrgn
2024-05-09T20:45:32,890   copying cryodrgn/_version.py -> build/lib/cryodrgn
2024-05-09T20:45:32,891   copying cryodrgn/shift_grid3.py -> build/lib/cryodrgn
2024-05-09T20:45:32,893   copying cryodrgn/starfile.py -> build/lib/cryodrgn
2024-05-09T20:45:32,895   copying cryodrgn/pose.py -> build/lib/cryodrgn
2024-05-09T20:45:32,898   copying cryodrgn/losses.py -> build/lib/cryodrgn
2024-05-09T20:45:32,899   copying cryodrgn/utils.py -> build/lib/cryodrgn
2024-05-09T20:45:32,901   copying cryodrgn/so3_grid.py -> build/lib/cryodrgn
2024-05-09T20:45:32,903   copying cryodrgn/lattice.py -> build/lib/cryodrgn
2024-05-09T20:45:32,905   copying cryodrgn/pose_search.py -> build/lib/cryodrgn
2024-05-09T20:45:32,908   copying cryodrgn/command_line.py -> build/lib/cryodrgn
2024-05-09T20:45:32,912   copying cryodrgn/source.py -> build/lib/cryodrgn
2024-05-09T20:45:32,915   copying cryodrgn/analysis.py -> build/lib/cryodrgn
2024-05-09T20:45:32,919   copying cryodrgn/__init__.py -> build/lib/cryodrgn
2024-05-09T20:45:32,926   copying cryodrgn/models.py -> build/lib/cryodrgn
2024-05-09T20:45:32,934   copying cryodrgn/dataset.py -> build/lib/cryodrgn
2024-05-09T20:45:32,938   copying cryodrgn/shift_grid.py -> build/lib/cryodrgn
2024-05-09T20:45:32,939   copying cryodrgn/beta_schedule.py -> build/lib/cryodrgn
2024-05-09T20:45:32,942   creating build/lib/cryodrgn/commands
2024-05-09T20:45:32,943   copying cryodrgn/commands/parse_pose_csparc.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,945   copying cryodrgn/commands/train_vae.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,948   copying cryodrgn/commands/backproject_voxel.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,950   copying cryodrgn/commands/parse_pose_star.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,951   copying cryodrgn/commands/abinit_het.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,954   copying cryodrgn/commands/preprocess.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,956   copying cryodrgn/commands/train_nn.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,960   copying cryodrgn/commands/downsample.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,962   copying cryodrgn/commands/graph_traversal.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,966   copying cryodrgn/commands/direct_traversal.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,971   copying cryodrgn/commands/__init__.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,976   copying cryodrgn/commands/abinit_homo.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,985   copying cryodrgn/commands/view_config.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,986   copying cryodrgn/commands/parse_ctf_star.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,988   copying cryodrgn/commands/pc_traversal.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,990   copying cryodrgn/commands/analyze_landscape.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,994   copying cryodrgn/commands/eval_images.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,996   copying cryodrgn/commands/analyze.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:32,999   copying cryodrgn/commands/eval_vol.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:33,001   copying cryodrgn/commands/analyze_landscape_full.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:33,003   copying cryodrgn/commands/parse_ctf_csparc.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:33,005   copying cryodrgn/commands/filter.py -> build/lib/cryodrgn/commands
2024-05-09T20:45:33,009   creating build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,010   copying cryodrgn/commands_utils/filter_star.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,011   copying cryodrgn/commands_utils/write_star.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,014   copying cryodrgn/commands_utils/plot_fsc.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,015   copying cryodrgn/commands_utils/view_cs_header.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,017   copying cryodrgn/commands_utils/flip_hand.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,018   copying cryodrgn/commands_utils/view_mrcs.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,020   copying cryodrgn/commands_utils/invert_contrast.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,022   copying cryodrgn/commands_utils/write_cs.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,024   copying cryodrgn/commands_utils/fsc.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,026   copying cryodrgn/commands_utils/select_clusters.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,028   copying cryodrgn/commands_utils/phase_flip.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,029   copying cryodrgn/commands_utils/select_random.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,031   copying cryodrgn/commands_utils/gen_mask.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,033   copying cryodrgn/commands_utils/translate_mrcs.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,034   copying cryodrgn/commands_utils/__init__.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,036   copying cryodrgn/commands_utils/filter_pkl.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,038   copying cryodrgn/commands_utils/concat_pkls.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,040   copying cryodrgn/commands_utils/view_header.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,042   copying cryodrgn/commands_utils/filter_mrcs.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,044   copying cryodrgn/commands_utils/clean.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,048   copying cryodrgn/commands_utils/add_psize.py -> build/lib/cryodrgn/commands_utils
2024-05-09T20:45:33,050   running egg_info
2024-05-09T20:45:33,056   writing cryodrgn.egg-info/PKG-INFO
2024-05-09T20:45:33,064   writing dependency_links to cryodrgn.egg-info/dependency_links.txt
2024-05-09T20:45:33,066   writing entry points to cryodrgn.egg-info/entry_points.txt
2024-05-09T20:45:33,070   writing requirements to cryodrgn.egg-info/requires.txt
2024-05-09T20:45:33,071   writing top-level names to cryodrgn.egg-info/top_level.txt
2024-05-09T20:45:33,115   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-05-09T20:45:33,124   reading manifest file 'cryodrgn.egg-info/SOURCES.txt'
2024-05-09T20:45:33,159   reading manifest template 'MANIFEST.in'
2024-05-09T20:45:33,161   adding license file 'LICENSE.txt'
2024-05-09T20:45:33,173   writing manifest file 'cryodrgn.egg-info/SOURCES.txt'
2024-05-09T20:45:33,187   copying cryodrgn/healpy_grid.json -> build/lib/cryodrgn
2024-05-09T20:45:33,353   creating build/lib/cryodrgn/templates
2024-05-09T20:45:33,354   copying cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/lib/cryodrgn/templates
2024-05-09T20:45:33,357   copying cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/lib/cryodrgn/templates
2024-05-09T20:45:33,359   copying cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/lib/cryodrgn/templates
2024-05-09T20:45:33,362   copying cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/lib/cryodrgn/templates
2024-05-09T20:45:33,365   copying cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/lib/cryodrgn/templates
2024-05-09T20:45:33,383   installing to build/bdist.linux-armv7l/wheel
2024-05-09T20:45:33,384   running install
2024-05-09T20:45:33,409   running install_lib
2024-05-09T20:45:33,415   creating build/bdist.linux-armv7l
2024-05-09T20:45:33,415   creating build/bdist.linux-armv7l/wheel
2024-05-09T20:45:33,417   creating build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,419   creating build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,420   copying build/lib/cryodrgn/commands/parse_pose_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,422   copying build/lib/cryodrgn/commands/train_vae.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,425   copying build/lib/cryodrgn/commands/backproject_voxel.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,427   copying build/lib/cryodrgn/commands/parse_pose_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,429   copying build/lib/cryodrgn/commands/abinit_het.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,432   copying build/lib/cryodrgn/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,434   copying build/lib/cryodrgn/commands/train_nn.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,436   copying build/lib/cryodrgn/commands/downsample.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,438   copying build/lib/cryodrgn/commands/graph_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,441   copying build/lib/cryodrgn/commands/direct_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,442   copying build/lib/cryodrgn/commands/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,444   copying build/lib/cryodrgn/commands/abinit_homo.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,446   copying build/lib/cryodrgn/commands/view_config.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,448   copying build/lib/cryodrgn/commands/parse_ctf_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,450   copying build/lib/cryodrgn/commands/pc_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,451   copying build/lib/cryodrgn/commands/analyze_landscape.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,454   copying build/lib/cryodrgn/commands/eval_images.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,456   copying build/lib/cryodrgn/commands/analyze.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,459   copying build/lib/cryodrgn/commands/eval_vol.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,461   copying build/lib/cryodrgn/commands/analyze_landscape_full.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,463   copying build/lib/cryodrgn/commands/parse_ctf_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,465   copying build/lib/cryodrgn/commands/filter.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2024-05-09T20:45:33,467   copying build/lib/cryodrgn/config.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,469   copying build/lib/cryodrgn/make_healpy.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,471   copying build/lib/cryodrgn/ctf.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,473   copying build/lib/cryodrgn/fft.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,475   copying build/lib/cryodrgn/healpy_grid.json -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,638   copying build/lib/cryodrgn/mrc.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,640   copying build/lib/cryodrgn/lie_tools.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,642   copying build/lib/cryodrgn/_version.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,643   copying build/lib/cryodrgn/shift_grid3.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,645   copying build/lib/cryodrgn/starfile.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,647   copying build/lib/cryodrgn/pose.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,649   copying build/lib/cryodrgn/losses.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,651   copying build/lib/cryodrgn/utils.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,653   copying build/lib/cryodrgn/so3_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,655   copying build/lib/cryodrgn/lattice.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,657   copying build/lib/cryodrgn/pose_search.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,659   copying build/lib/cryodrgn/command_line.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,662   copying build/lib/cryodrgn/source.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,664   copying build/lib/cryodrgn/analysis.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,667   copying build/lib/cryodrgn/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,669   creating build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,670   copying build/lib/cryodrgn/commands_utils/filter_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,672   copying build/lib/cryodrgn/commands_utils/write_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,674   copying build/lib/cryodrgn/commands_utils/plot_fsc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,676   copying build/lib/cryodrgn/commands_utils/view_cs_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,678   copying build/lib/cryodrgn/commands_utils/flip_hand.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,681   copying build/lib/cryodrgn/commands_utils/view_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,683   copying build/lib/cryodrgn/commands_utils/invert_contrast.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,684   copying build/lib/cryodrgn/commands_utils/write_cs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,686   copying build/lib/cryodrgn/commands_utils/fsc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,688   copying build/lib/cryodrgn/commands_utils/select_clusters.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,690   copying build/lib/cryodrgn/commands_utils/phase_flip.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,692   copying build/lib/cryodrgn/commands_utils/select_random.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,693   copying build/lib/cryodrgn/commands_utils/gen_mask.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,695   copying build/lib/cryodrgn/commands_utils/translate_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,697   copying build/lib/cryodrgn/commands_utils/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,698   copying build/lib/cryodrgn/commands_utils/filter_pkl.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,700   copying build/lib/cryodrgn/commands_utils/concat_pkls.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,701   copying build/lib/cryodrgn/commands_utils/view_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,703   copying build/lib/cryodrgn/commands_utils/filter_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,705   copying build/lib/cryodrgn/commands_utils/clean.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,707   copying build/lib/cryodrgn/commands_utils/add_psize.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2024-05-09T20:45:33,708   copying build/lib/cryodrgn/models.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,711   copying build/lib/cryodrgn/dataset.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,714   copying build/lib/cryodrgn/shift_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,716   creating build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-05-09T20:45:33,717   copying build/lib/cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-05-09T20:45:33,720   copying build/lib/cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-05-09T20:45:33,723   copying build/lib/cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-05-09T20:45:33,725   copying build/lib/cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-05-09T20:45:33,728   copying build/lib/cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2024-05-09T20:45:33,730   copying build/lib/cryodrgn/beta_schedule.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2024-05-09T20:45:33,731   running install_egg_info
2024-05-09T20:45:33,737   Copying cryodrgn.egg-info to build/bdist.linux-armv7l/wheel/cryodrgn-3.3.1-py3.9.egg-info
2024-05-09T20:45:33,751   running install_scripts
2024-05-09T20:45:33,778   creating build/bdist.linux-armv7l/wheel/cryodrgn-3.3.1.dist-info/WHEEL
2024-05-09T20:45:33,781   creating '/tmp/pip-wheel-uw798l66/.tmp-ub2m00kl/cryodrgn-3.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-05-09T20:45:33,783   adding 'cryodrgn/__init__.py'
2024-05-09T20:45:33,785   adding 'cryodrgn/_version.py'
2024-05-09T20:45:33,787   adding 'cryodrgn/analysis.py'
2024-05-09T20:45:33,789   adding 'cryodrgn/beta_schedule.py'
2024-05-09T20:45:33,790   adding 'cryodrgn/command_line.py'
2024-05-09T20:45:33,792   adding 'cryodrgn/config.py'
2024-05-09T20:45:33,794   adding 'cryodrgn/ctf.py'
2024-05-09T20:45:33,796   adding 'cryodrgn/dataset.py'
2024-05-09T20:45:33,798   adding 'cryodrgn/fft.py'
2024-05-09T20:45:34,574   adding 'cryodrgn/healpy_grid.json'
2024-05-09T20:45:34,639   adding 'cryodrgn/lattice.py'
2024-05-09T20:45:34,641   adding 'cryodrgn/lie_tools.py'
2024-05-09T20:45:34,642   adding 'cryodrgn/losses.py'
2024-05-09T20:45:34,643   adding 'cryodrgn/make_healpy.py'
2024-05-09T20:45:34,647   adding 'cryodrgn/models.py'
2024-05-09T20:45:34,650   adding 'cryodrgn/mrc.py'
2024-05-09T20:45:34,651   adding 'cryodrgn/pose.py'
2024-05-09T20:45:34,654   adding 'cryodrgn/pose_search.py'
2024-05-09T20:45:34,655   adding 'cryodrgn/shift_grid.py'
2024-05-09T20:45:34,656   adding 'cryodrgn/shift_grid3.py'
2024-05-09T20:45:34,658   adding 'cryodrgn/so3_grid.py'
2024-05-09T20:45:34,660   adding 'cryodrgn/source.py'
2024-05-09T20:45:34,662   adding 'cryodrgn/starfile.py'
2024-05-09T20:45:34,663   adding 'cryodrgn/utils.py'
2024-05-09T20:45:34,665   adding 'cryodrgn/commands/__init__.py'
2024-05-09T20:45:34,669   adding 'cryodrgn/commands/abinit_het.py'
2024-05-09T20:45:34,672   adding 'cryodrgn/commands/abinit_homo.py'
2024-05-09T20:45:34,675   adding 'cryodrgn/commands/analyze.py'
2024-05-09T20:45:34,677   adding 'cryodrgn/commands/analyze_landscape.py'
2024-05-09T20:45:34,679   adding 'cryodrgn/commands/analyze_landscape_full.py'
2024-05-09T20:45:34,681   adding 'cryodrgn/commands/backproject_voxel.py'
2024-05-09T20:45:34,683   adding 'cryodrgn/commands/direct_traversal.py'
2024-05-09T20:45:34,684   adding 'cryodrgn/commands/downsample.py'
2024-05-09T20:45:34,686   adding 'cryodrgn/commands/eval_images.py'
2024-05-09T20:45:34,688   adding 'cryodrgn/commands/eval_vol.py'
2024-05-09T20:45:34,690   adding 'cryodrgn/commands/filter.py'
2024-05-09T20:45:34,692   adding 'cryodrgn/commands/graph_traversal.py'
2024-05-09T20:45:34,693   adding 'cryodrgn/commands/parse_ctf_csparc.py'
2024-05-09T20:45:34,695   adding 'cryodrgn/commands/parse_ctf_star.py'
2024-05-09T20:45:34,696   adding 'cryodrgn/commands/parse_pose_csparc.py'
2024-05-09T20:45:34,698   adding 'cryodrgn/commands/parse_pose_star.py'
2024-05-09T20:45:34,699   adding 'cryodrgn/commands/pc_traversal.py'
2024-05-09T20:45:34,700   adding 'cryodrgn/commands/preprocess.py'
2024-05-09T20:45:34,703   adding 'cryodrgn/commands/train_nn.py'
2024-05-09T20:45:34,707   adding 'cryodrgn/commands/train_vae.py'
2024-05-09T20:45:34,708   adding 'cryodrgn/commands/view_config.py'
2024-05-09T20:45:34,710   adding 'cryodrgn/commands_utils/__init__.py'
2024-05-09T20:45:34,711   adding 'cryodrgn/commands_utils/add_psize.py'
2024-05-09T20:45:34,713   adding 'cryodrgn/commands_utils/clean.py'
2024-05-09T20:45:34,714   adding 'cryodrgn/commands_utils/concat_pkls.py'
2024-05-09T20:45:34,715   adding 'cryodrgn/commands_utils/filter_mrcs.py'
2024-05-09T20:45:34,717   adding 'cryodrgn/commands_utils/filter_pkl.py'
2024-05-09T20:45:34,718   adding 'cryodrgn/commands_utils/filter_star.py'
2024-05-09T20:45:34,719   adding 'cryodrgn/commands_utils/flip_hand.py'
2024-05-09T20:45:34,720   adding 'cryodrgn/commands_utils/fsc.py'
2024-05-09T20:45:34,722   adding 'cryodrgn/commands_utils/gen_mask.py'
2024-05-09T20:45:34,723   adding 'cryodrgn/commands_utils/invert_contrast.py'
2024-05-09T20:45:34,724   adding 'cryodrgn/commands_utils/phase_flip.py'
2024-05-09T20:45:34,726   adding 'cryodrgn/commands_utils/plot_fsc.py'
2024-05-09T20:45:34,727   adding 'cryodrgn/commands_utils/select_clusters.py'
2024-05-09T20:45:34,729   adding 'cryodrgn/commands_utils/select_random.py'
2024-05-09T20:45:34,730   adding 'cryodrgn/commands_utils/translate_mrcs.py'
2024-05-09T20:45:34,731   adding 'cryodrgn/commands_utils/view_cs_header.py'
2024-05-09T20:45:34,733   adding 'cryodrgn/commands_utils/view_header.py'
2024-05-09T20:45:34,734   adding 'cryodrgn/commands_utils/view_mrcs.py'
2024-05-09T20:45:34,736   adding 'cryodrgn/commands_utils/write_cs.py'
2024-05-09T20:45:34,738   adding 'cryodrgn/commands_utils/write_star.py'
2024-05-09T20:45:34,741   adding 'cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb'
2024-05-09T20:45:34,742   adding 'cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb'
2024-05-09T20:45:34,744   adding 'cryodrgn/templates/cryoDRGN_figures_template.ipynb'
2024-05-09T20:45:34,747   adding 'cryodrgn/templates/cryoDRGN_filtering_template.ipynb'
2024-05-09T20:45:34,749   adding 'cryodrgn/templates/cryoDRGN_viz_template.ipynb'
2024-05-09T20:45:34,757   adding 'cryodrgn-3.3.1.dist-info/LICENSE.txt'
2024-05-09T20:45:34,761   adding 'cryodrgn-3.3.1.dist-info/METADATA'
2024-05-09T20:45:34,762   adding 'cryodrgn-3.3.1.dist-info/WHEEL'
2024-05-09T20:45:34,763   adding 'cryodrgn-3.3.1.dist-info/entry_points.txt'
2024-05-09T20:45:34,764   adding 'cryodrgn-3.3.1.dist-info/top_level.txt'
2024-05-09T20:45:34,766   adding 'cryodrgn-3.3.1.dist-info/RECORD'
2024-05-09T20:45:34,782   removing build/bdist.linux-armv7l/wheel
2024-05-09T20:45:34,922   Building wheel for cryodrgn (pyproject.toml): finished with status 'done'
2024-05-09T20:45:34,954   Created wheel for cryodrgn: filename=cryodrgn-3.3.1-py3-none-any.whl size=1161786 sha256=647299cf3549465b1c2b7296e0c48b83e6208d693322dabfa10b5918d4f09358
2024-05-09T20:45:34,955   Stored in directory: /tmp/pip-ephem-wheel-cache-4_ayxo83/wheels/13/7a/11/26a0ff4b9e3e5742f15bcb00093754d21c8f284db84538a700
2024-05-09T20:45:34,973 Successfully built cryodrgn
2024-05-09T20:45:35,002 Removed build tracker: '/tmp/pip-build-tracker-sxx9dw7m'