2024-05-09T23:59:13,832 Created temporary directory: /tmp/pip-build-tracker-659lfg8l 2024-05-09T23:59:13,833 Initialized build tracking at /tmp/pip-build-tracker-659lfg8l 2024-05-09T23:59:13,834 Created build tracker: /tmp/pip-build-tracker-659lfg8l 2024-05-09T23:59:13,834 Entered build tracker: /tmp/pip-build-tracker-659lfg8l 2024-05-09T23:59:13,835 Created temporary directory: /tmp/pip-wheel-rxc1juv3 2024-05-09T23:59:13,839 Created temporary directory: /tmp/pip-ephem-wheel-cache-21ylj5ho 2024-05-09T23:59:13,862 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-09T23:59:13,866 2 location(s) to search for versions of protein-design-tools: 2024-05-09T23:59:13,866 * https://pypi.org/simple/protein-design-tools/ 2024-05-09T23:59:13,866 * https://www.piwheels.org/simple/protein-design-tools/ 2024-05-09T23:59:13,867 Fetching project page and analyzing links: https://pypi.org/simple/protein-design-tools/ 2024-05-09T23:59:13,867 Getting page https://pypi.org/simple/protein-design-tools/ 2024-05-09T23:59:13,869 Found index url https://pypi.org/simple/ 2024-05-09T23:59:14,084 Fetched page https://pypi.org/simple/protein-design-tools/ as application/vnd.pypi.simple.v1+json 2024-05-09T23:59:14,088 Found link https://files.pythonhosted.org/packages/ed/a6/a527cb82986e54d8bf9c1f1de71036e3474c6fde773c40dbdcd2e857793e/protein-design-tools-0.1.0.tar.gz (from https://pypi.org/simple/protein-design-tools/), version: 0.1.0 2024-05-09T23:59:14,089 Found link https://files.pythonhosted.org/packages/99/f2/9710ed6b56c764ed7ecb1035655952234d65fef841aa220f727e7dc58c58/protein_design_tools-0.1.1.tar.gz (from https://pypi.org/simple/protein-design-tools/), version: 0.1.1 2024-05-09T23:59:14,090 Found link https://files.pythonhosted.org/packages/b2/8e/8559cd3b6f8454390d45afb9015819cdb01aa51ed9b53b64b044b9342bb2/protein_design_tools-0.1.3.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.3 2024-05-09T23:59:14,091 Found link https://files.pythonhosted.org/packages/05/90/17c62aa7320a475051eea3f857d854065f49e1c6e241816662de784d4495/protein_design_tools-0.1.4.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.4 2024-05-09T23:59:14,092 Found link https://files.pythonhosted.org/packages/2b/4f/e576ff4b0c17f92a752670ae249b18c4b22681d162b3ea54eb7c8187e934/protein-design-tools-0.1.5.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.5 2024-05-09T23:59:14,093 Found link https://files.pythonhosted.org/packages/2e/43/6bbc489853ecce726a00644099615c17b574b2fe318c53409f7071eb1829/protein_design_tools-0.1.6.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.6 2024-05-09T23:59:14,094 Found link https://files.pythonhosted.org/packages/6c/af/d4f52f5271c5185dcb0683fdea82ccd34534111b732c96913ee6cee20ba2/protein_design_tools-0.1.7.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.7 2024-05-09T23:59:14,095 Found link https://files.pythonhosted.org/packages/14/24/a1d06b818f3d46d7318b86f0334181bb8b9134f71856b2a0ca69ea24d040/protein_design_tools-0.1.8.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.8 2024-05-09T23:59:14,096 Found link https://files.pythonhosted.org/packages/9c/73/da486d6ea5db2b79ee4188d258d6b13734e412cf0c16cc9d40d09900699d/protein_design_tools-0.1.9.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.9 2024-05-09T23:59:14,097 Found link https://files.pythonhosted.org/packages/9e/09/ece7ef27626839515873c975edec7409b1501fe0d06f0e798ec6fefd3168/protein_design_tools-0.1.10.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.10 2024-05-09T23:59:14,098 Found link https://files.pythonhosted.org/packages/be/d1/7552b3dafe349a6c0b89507eaf0b75338f5fa977b281f546bb30649942b7/protein_design_tools-0.1.11.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.11 2024-05-09T23:59:14,099 Found link https://files.pythonhosted.org/packages/a9/18/5ea417d67a863fc629b4b3a5689993ecf100b2a3241d94bff1e30b83f3f5/protein_design_tools-0.1.12.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.12 2024-05-09T23:59:14,100 Found link https://files.pythonhosted.org/packages/66/a4/9a64125c3f518d628b870adc8c9fb9ab0e26e23a3eabc51a0c06594b915e/protein_design_tools-0.1.13.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.13 2024-05-09T23:59:14,101 Found link https://files.pythonhosted.org/packages/70/87/e061d696b801f8b4d00fe4611c89fecf786ec93a5ecb0ba89b7a90f906e7/protein_design_tools-0.1.14.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.14 2024-05-09T23:59:14,102 Found link https://files.pythonhosted.org/packages/d0/02/6860c3a27feea487138bc8fc1814e86f48d4ecd4ff13575d0664e0636516/protein_design_tools-0.1.15.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.15 2024-05-09T23:59:14,103 Found link https://files.pythonhosted.org/packages/aa/f8/5530cc31171d24490da206b3f7f8050246c7566871002b256f047fc5756b/protein_design_tools-0.1.16.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.16 2024-05-09T23:59:14,104 Found link https://files.pythonhosted.org/packages/f0/d2/f64c07141a7b5573eb0035be55de68ad06fff208c0aa95c0641ae5ef064e/protein_design_tools-0.1.17.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.17 2024-05-09T23:59:14,104 Found link https://files.pythonhosted.org/packages/ba/36/d107bb411a9106a299484fd078f0ade64e1388720cdc97a815f8895f3a15/protein_design_tools-0.1.18.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.18 2024-05-09T23:59:14,105 Fetching project page and analyzing links: https://www.piwheels.org/simple/protein-design-tools/ 2024-05-09T23:59:14,106 Getting page https://www.piwheels.org/simple/protein-design-tools/ 2024-05-09T23:59:14,108 Found index url https://www.piwheels.org/simple/ 2024-05-09T23:59:14,813 Fetched page https://www.piwheels.org/simple/protein-design-tools/ as text/html 2024-05-09T23:59:14,824 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.12-py3-none-any.whl#sha256=31708ffda844e5438199508fb1c157e275d8abf0ce62d7a067b0dbcf336ff34c (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-09T23:59:14,825 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.11-py3-none-any.whl#sha256=3c7c4f05ad2996e49f7f0832d581ec72b0517cd4e0f986e845108c0a6e58acb8 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-09T23:59:14,826 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.10-py3-none-any.whl#sha256=d7e2a99fe064326d2b4c1fcc6ee98dc054b35d1ceccb8fe8665a0310c2d5dde3 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-09T23:59:14,828 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.9-py3-none-any.whl#sha256=5acbaf40f239e41b61fb581d11ea8a230ca5197b170159850bc93cd3403976f6 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-09T23:59:14,829 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.8-py3-none-any.whl#sha256=f1747869a6004c8e1f0fb378cf55ab0df7c666a0a419414de8b98d92cacb2132 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-09T23:59:14,830 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.7-py3-none-any.whl#sha256=0e32edd830836de2ef77b03f2375ddd185dabc9fec3b9b9983f05b4f4d545a26 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-09T23:59:14,832 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.6-py3-none-any.whl#sha256=b7597266a06dd8c3544dd12e69d278db111719d068166100b2fde95e5438a85d (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-09T23:59:14,834 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.5-py3-none-any.whl#sha256=d39131f1daa2a71dfaf41651cbf0905f806d074b025dc60e908fd1562896da5e (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-09T23:59:14,836 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.4-py3-none-any.whl#sha256=8fb6924808b71bdc89472e84af147a439817e0a3a42d6c8ebbb24ab24d5aed48 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-09T23:59:14,838 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.3-py3-none-any.whl#sha256=3ca03677ec61152b0d2633cdaf790e7d1f0ad26fe98b3e941801c0fb4f764543 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-09T23:59:14,839 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.1-py3-none-any.whl#sha256=6906d32c055f62c2001f7821cd213d2dea1d429b436a820f794718def3ffc302 (from https://www.piwheels.org/simple/protein-design-tools/) 2024-05-09T23:59:14,840 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.0-py3-none-any.whl#sha256=b026a4bfbdb9619aa35b321f689be75094c1772ae9843728423ab7b58df7c6da (from https://www.piwheels.org/simple/protein-design-tools/) 2024-05-09T23:59:14,842 Skipping link: not a file: https://www.piwheels.org/simple/protein-design-tools/ 2024-05-09T23:59:14,843 Skipping link: not a file: https://pypi.org/simple/protein-design-tools/ 2024-05-09T23:59:14,882 Given no hashes to check 1 links for project 'protein-design-tools': discarding no candidates 2024-05-09T23:59:14,917 Collecting protein-design-tools==0.1.13 2024-05-09T23:59:14,921 Created temporary directory: /tmp/pip-unpack-52xj7khr 2024-05-09T23:59:15,144 Downloading protein_design_tools-0.1.13.tar.gz (7.0 kB) 2024-05-09T23:59:15,185 Added protein-design-tools==0.1.13 from https://files.pythonhosted.org/packages/66/a4/9a64125c3f518d628b870adc8c9fb9ab0e26e23a3eabc51a0c06594b915e/protein_design_tools-0.1.13.tar.gz to build tracker '/tmp/pip-build-tracker-659lfg8l' 2024-05-09T23:59:15,187 Running setup.py (path:/tmp/pip-wheel-rxc1juv3/protein-design-tools_36b1489b71974d00b76e352488ea4043/setup.py) egg_info for package protein-design-tools 2024-05-09T23:59:15,188 Created temporary directory: /tmp/pip-pip-egg-info-6dashunq 2024-05-09T23:59:15,188 Preparing metadata (setup.py): started 2024-05-09T23:59:15,190 Running command python setup.py egg_info 2024-05-09T23:59:16,550 running egg_info 2024-05-09T23:59:16,551 creating /tmp/pip-pip-egg-info-6dashunq/protein_design_tools.egg-info 2024-05-09T23:59:16,579 writing /tmp/pip-pip-egg-info-6dashunq/protein_design_tools.egg-info/PKG-INFO 2024-05-09T23:59:16,582 writing dependency_links to /tmp/pip-pip-egg-info-6dashunq/protein_design_tools.egg-info/dependency_links.txt 2024-05-09T23:59:16,584 writing requirements to /tmp/pip-pip-egg-info-6dashunq/protein_design_tools.egg-info/requires.txt 2024-05-09T23:59:16,585 writing top-level names to /tmp/pip-pip-egg-info-6dashunq/protein_design_tools.egg-info/top_level.txt 2024-05-09T23:59:16,587 writing manifest file '/tmp/pip-pip-egg-info-6dashunq/protein_design_tools.egg-info/SOURCES.txt' 2024-05-09T23:59:16,671 reading manifest file '/tmp/pip-pip-egg-info-6dashunq/protein_design_tools.egg-info/SOURCES.txt' 2024-05-09T23:59:16,672 adding license file 'LICENSE' 2024-05-09T23:59:16,674 writing manifest file '/tmp/pip-pip-egg-info-6dashunq/protein_design_tools.egg-info/SOURCES.txt' 2024-05-09T23:59:16,792 Preparing metadata (setup.py): finished with status 'done' 2024-05-09T23:59:16,796 Source in /tmp/pip-wheel-rxc1juv3/protein-design-tools_36b1489b71974d00b76e352488ea4043 has version 0.1.13, which satisfies requirement protein-design-tools==0.1.13 from https://files.pythonhosted.org/packages/66/a4/9a64125c3f518d628b870adc8c9fb9ab0e26e23a3eabc51a0c06594b915e/protein_design_tools-0.1.13.tar.gz 2024-05-09T23:59:16,797 Removed protein-design-tools==0.1.13 from https://files.pythonhosted.org/packages/66/a4/9a64125c3f518d628b870adc8c9fb9ab0e26e23a3eabc51a0c06594b915e/protein_design_tools-0.1.13.tar.gz from build tracker '/tmp/pip-build-tracker-659lfg8l' 2024-05-09T23:59:16,803 Created temporary directory: /tmp/pip-unpack-g84wp_3n 2024-05-09T23:59:16,804 Created temporary directory: /tmp/pip-unpack-ski96vzz 2024-05-09T23:59:16,808 Building wheels for collected packages: protein-design-tools 2024-05-09T23:59:16,812 Created temporary directory: /tmp/pip-wheel-r25ryau7 2024-05-09T23:59:16,813 Building wheel for protein-design-tools (setup.py): started 2024-05-09T23:59:16,814 Destination directory: /tmp/pip-wheel-r25ryau7 2024-05-09T23:59:16,815 Running command python setup.py bdist_wheel 2024-05-09T23:59:17,952 running bdist_wheel 2024-05-09T23:59:18,052 running build 2024-05-09T23:59:18,053 running build_py 2024-05-09T23:59:18,082 creating build 2024-05-09T23:59:18,082 creating build/lib 2024-05-09T23:59:18,083 creating build/lib/protein_design_tools 2024-05-09T23:59:18,085 copying protein_design_tools/protein_structure.py -> build/lib/protein_design_tools 2024-05-09T23:59:18,088 copying protein_design_tools/protein_structure_utils.py -> build/lib/protein_design_tools 2024-05-09T23:59:18,090 copying protein_design_tools/test.py -> build/lib/protein_design_tools 2024-05-09T23:59:18,092 copying protein_design_tools/__init__.py -> build/lib/protein_design_tools 2024-05-09T23:59:18,122 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-09T23:59:18,123 !! 2024-05-09T23:59:18,124 ******************************************************************************** 2024-05-09T23:59:18,125 Please avoid running ``setup.py`` directly. 2024-05-09T23:59:18,125 Instead, use pypa/build, pypa/installer or other 2024-05-09T23:59:18,126 standards-based tools. 2024-05-09T23:59:18,127 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-09T23:59:18,127 ******************************************************************************** 2024-05-09T23:59:18,129 !! 2024-05-09T23:59:18,129 self.initialize_options() 2024-05-09T23:59:18,149 installing to build/bdist.linux-armv7l/wheel 2024-05-09T23:59:18,150 running install 2024-05-09T23:59:18,175 running install_lib 2024-05-09T23:59:18,201 creating build/bdist.linux-armv7l 2024-05-09T23:59:18,201 creating build/bdist.linux-armv7l/wheel 2024-05-09T23:59:18,203 creating build/bdist.linux-armv7l/wheel/protein_design_tools 2024-05-09T23:59:18,204 copying build/lib/protein_design_tools/protein_structure.py -> build/bdist.linux-armv7l/wheel/protein_design_tools 2024-05-09T23:59:18,207 copying build/lib/protein_design_tools/protein_structure_utils.py -> build/bdist.linux-armv7l/wheel/protein_design_tools 2024-05-09T23:59:18,209 copying build/lib/protein_design_tools/test.py -> build/bdist.linux-armv7l/wheel/protein_design_tools 2024-05-09T23:59:18,211 copying build/lib/protein_design_tools/__init__.py -> build/bdist.linux-armv7l/wheel/protein_design_tools 2024-05-09T23:59:18,213 running install_egg_info 2024-05-09T23:59:18,279 running egg_info 2024-05-09T23:59:18,306 writing protein_design_tools.egg-info/PKG-INFO 2024-05-09T23:59:18,310 writing dependency_links to protein_design_tools.egg-info/dependency_links.txt 2024-05-09T23:59:18,312 writing requirements to protein_design_tools.egg-info/requires.txt 2024-05-09T23:59:18,313 writing top-level names to protein_design_tools.egg-info/top_level.txt 2024-05-09T23:59:18,341 reading manifest file 'protein_design_tools.egg-info/SOURCES.txt' 2024-05-09T23:59:18,344 adding license file 'LICENSE' 2024-05-09T23:59:18,346 writing manifest file 'protein_design_tools.egg-info/SOURCES.txt' 2024-05-09T23:59:18,348 Copying protein_design_tools.egg-info to build/bdist.linux-armv7l/wheel/protein_design_tools-0.1.13-py3.11.egg-info 2024-05-09T23:59:18,358 running install_scripts 2024-05-09T23:59:18,370 creating build/bdist.linux-armv7l/wheel/protein_design_tools-0.1.13.dist-info/WHEEL 2024-05-09T23:59:18,373 creating '/tmp/pip-wheel-r25ryau7/protein_design_tools-0.1.13-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-09T23:59:18,375 adding 'protein_design_tools/__init__.py' 2024-05-09T23:59:18,377 adding 'protein_design_tools/protein_structure.py' 2024-05-09T23:59:18,378 adding 'protein_design_tools/protein_structure_utils.py' 2024-05-09T23:59:18,380 adding 'protein_design_tools/test.py' 2024-05-09T23:59:18,382 adding 'protein_design_tools-0.1.13.dist-info/LICENSE' 2024-05-09T23:59:18,383 adding 'protein_design_tools-0.1.13.dist-info/METADATA' 2024-05-09T23:59:18,384 adding 'protein_design_tools-0.1.13.dist-info/WHEEL' 2024-05-09T23:59:18,385 adding 'protein_design_tools-0.1.13.dist-info/top_level.txt' 2024-05-09T23:59:18,386 adding 'protein_design_tools-0.1.13.dist-info/RECORD' 2024-05-09T23:59:18,387 removing build/bdist.linux-armv7l/wheel 2024-05-09T23:59:18,510 Building wheel for protein-design-tools (setup.py): finished with status 'done' 2024-05-09T23:59:18,513 Created wheel for protein-design-tools: filename=protein_design_tools-0.1.13-py3-none-any.whl size=7382 sha256=30eb22fc29481255ef00f15076280a7bb8c481e154a09ee7fcc6784d2926404a 2024-05-09T23:59:18,515 Stored in directory: /tmp/pip-ephem-wheel-cache-21ylj5ho/wheels/06/dc/24/2608fcb6e0c260f4930ee6301cb9ca183cb3fc2ec860603f1b 2024-05-09T23:59:18,526 Successfully built protein-design-tools 2024-05-09T23:59:18,530 Removed build tracker: '/tmp/pip-build-tracker-659lfg8l'