2024-05-09T23:59:49,592 Created temporary directory: /tmp/pip-build-tracker-y0jlgdk9 2024-05-09T23:59:49,594 Initialized build tracking at /tmp/pip-build-tracker-y0jlgdk9 2024-05-09T23:59:49,594 Created build tracker: /tmp/pip-build-tracker-y0jlgdk9 2024-05-09T23:59:49,595 Entered build tracker: /tmp/pip-build-tracker-y0jlgdk9 2024-05-09T23:59:49,596 Created temporary directory: /tmp/pip-wheel-d7vm7we4 2024-05-09T23:59:49,598 Created temporary directory: /tmp/pip-ephem-wheel-cache-igk_udsy 2024-05-09T23:59:49,621 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-09T23:59:49,624 2 location(s) to search for versions of diploshic: 2024-05-09T23:59:49,624 * https://pypi.org/simple/diploshic/ 2024-05-09T23:59:49,624 * https://www.piwheels.org/simple/diploshic/ 2024-05-09T23:59:49,625 Fetching project page and analyzing links: https://pypi.org/simple/diploshic/ 2024-05-09T23:59:49,625 Getting page https://pypi.org/simple/diploshic/ 2024-05-09T23:59:49,627 Found index url https://pypi.org/simple/ 2024-05-09T23:59:49,856 Fetched page https://pypi.org/simple/diploshic/ as application/vnd.pypi.simple.v1+json 2024-05-09T23:59:49,867 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/02/99/1ff0abc6647a2c9dd2e4a3f9053540f9732b6dcf4047263d91a0df96c5f1/diploSHIC-0.4-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,868 Found link https://files.pythonhosted.org/packages/a6/c2/86153839edc17cf57860b6fb6a15595a430050a4a13be6bd00fb6c5295b7/diploSHIC-0.4.tar.gz (from https://pypi.org/simple/diploshic/), version: 0.4 2024-05-09T23:59:49,869 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/00/9c/d2e25202b955aac1aaac20efed3e63b052610e6ec0a13996405a0e03c67b/diploSHIC-0.333333-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,869 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/4d/46/2fbbe2d5986a5a252f3ac3ab9514762c6bc72a5cc043ed9b55f3137efccb/diploSHIC-0.333333-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,870 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/3f/e6/bad94b60dee10f010ec5d2482cd0cebdc36ce0cbdf7c2bde16eb552c34a5/diploSHIC-0.333333-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,870 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/22/49/714f6bb8b2649a57e9c90671113ae16afd5053f11ba4fef1ec1774202a11/diploSHIC-0.333333-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,871 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/4f/de/c257892410d2cf05830ab52a583c0881bffa00f9ec4a5d092adf177348e9/diploSHIC-0.333333-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,871 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/ed/90/5a5f381e5b65d6a6225d67205b1692f1adc9c352ca863736288860193854/diploSHIC-0.333333-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,872 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/ad/4d/17b0e2b2816ea5dad9a9ecb9b8783659c83be49bbcc173abc9f8ead305f2/diploSHIC-0.333333-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,873 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/d0/3c/d5fbade30fcd59017060d0283eaf724110bea2509f1b82a417a3d05684fd/diploSHIC-0.333333-cp36-cp36m-musllinux_1_1_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,873 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/9b/b2/d709fcbc6de2496ed3adc2c9f4b89124f410320eddda051cec9fbc3d5fad/diploSHIC-0.333333-cp36-cp36m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,874 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/76/0c/fe78832d33a86ed083e4054d8324174faa1856abce56f2d17199546c14a2/diploSHIC-0.333333-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,875 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/b0/bc/5b5928c3ce52b1350ef4188ceb58ac8086b275b7757a2490cf56dda59574/diploSHIC-0.333333-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,875 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/e3/63/399c9dcabbeb1d2d3114514bb3f71ea02c80602dc873bbc0a577aff30307/diploSHIC-0.333333-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,875 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/b1/a3/5b06a0194db6925c5facd450b6ead8e72a7ede6741b486f1268fa58abcc6/diploSHIC-0.333333-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,876 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/8b/42/5827ed208dd4a5bb376b8d8c2e6df3d7da4acb543893aa69c6a5cc2375fa/diploSHIC-0.333333-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,876 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/73/42/4d3b4eb60f67061115b19bb3373d6112c0dade3db6de3787bacf94576671/diploSHIC-0.333333-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,877 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/a1/f4/91e24beb41be5627e12a176c1b287caeb5d9429db0628071b0a2ff3fb220/diploSHIC-0.333333-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,877 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/1f/13/f67bfe37155e29847297863b33237c7fa89186f8a6bbc67ec9f10885518d/diploSHIC-0.333333-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,878 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/89/64/9c469c81953743e785914f4605feb70686ba4bf75f1f36f3be3ffa8cd666/diploSHIC-0.333333-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,878 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/48/bd/6ed9e4cc32178654817ca4fcb19e0808907bc5d424e4f9c985174e5ddc42/diploSHIC-0.333333-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,879 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/50/2d/91f6211d84bbd43ffe389d29bd1d92233a57580b4d6aaa9a457a30393e7c/diploSHIC-0.333333-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,879 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/1f/e6/a7ce12139a20b5add882aa95b53a37713f7ef7a2a9b6bd2139a11f4c57eb/diploSHIC-0.333333-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,880 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/0c/e9/f3c6ee5bc91624a7dff45477d9b3623cb8505d4d968cddcfb878f68c05e2/diploSHIC-0.333333-pp37-pypy37_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,881 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/2c/00/fd70e2ae945f6bbdd3611e520cda448edbd7bcce6e7fb16344926a9bcd7c/diploSHIC-0.333333-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,881 Found link https://files.pythonhosted.org/packages/8e/79/bc66897efa74f1283c4830fe5531de3c5cd3cf92457ee7b67ce3bf1325f5/diploSHIC-0.333333.tar.gz (from https://pypi.org/simple/diploshic/), version: 0.333333 2024-05-09T23:59:49,882 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/42/cb/35722847899fdb73cbbf899d1037bdf59a2e2199fb64654fe24cb1e65744/diploSHIC-1.0.4-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,882 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/5e/18/89000e37569524d590e3b3c40e7bd29a41690acfb40d7487c0f1ddc66059/diploSHIC-1.0.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,883 Found link https://files.pythonhosted.org/packages/c7/c8/b90a016e57751797e821176810a08eb1f667e3e25d4ae6723676361186b9/diploSHIC-1.0.4.tar.gz (from https://pypi.org/simple/diploshic/), version: 1.0.4 2024-05-09T23:59:49,883 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/67/06/3c5bdf6afc99738c4aadfa894959e2354fae491a66047bae5ed5f3a2c323/diploSHIC-1.0.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,884 Found link https://files.pythonhosted.org/packages/12/bd/e811845aaf4d50d3e3197cf46dde64cdef271d370a0658f015db8aa52ca3/diploSHIC-1.0.5.tar.gz (from https://pypi.org/simple/diploshic/), version: 1.0.5 2024-05-09T23:59:49,885 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/b3/3b/41d048910179c9504c6a12b6fa4a8915908960ee5ce3c3636a69f7cc9f5e/diploSHIC-1.0.6-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,885 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/0d/00/513e3319ad1bcf2607f70f6d4715e256f97bf48b2d115bc03b61aef85dce/diploSHIC-1.0.6-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,886 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/a4/d8/7c808bc6012a64c6b7587bef7fec7a5192e7508ed0b5b7d7ff0f2ef9f4da/diploSHIC-1.0.6-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,886 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/56/1b/7cb2a9f51b7b1e6be12e90a0aa9a284665f9bc2acfae92c69ca8d12382d6/diploSHIC-1.0.6-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,887 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/79/22/f34d781df4de348cd122aae313ce89cf10cd07e99c68f2a93df917c6985d/diploSHIC-1.0.6-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,888 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/16/e7/bbbdf9e4daa69d48b8e6ca640e70bf36bb342670484b44e1c42494ec11e7/diploSHIC-1.0.6-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,888 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/4a/af/656fd753809482b8eecfe57cd66ce2f722e166656eb8a7a2c24d1e33c9ea/diploSHIC-1.0.6-cp36-cp36m-musllinux_1_1_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,888 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/54/54/d20bdb9f155a4d16d1e6369acf7ba4b5fffcec127922420197359e06ccc8/diploSHIC-1.0.6-cp36-cp36m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,889 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/f2/b0/d52f68e7413b67ba9ecb713614e716dadafcaf5fd9f1edbda005f333b7c9/diploSHIC-1.0.6-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,890 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/0d/e2/3ad8dfaff8b0eaab112d86c43d8fc3a2c9440238f716734a1b7b00150196/diploSHIC-1.0.6-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,890 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/da/c3/db4310a12eb63a797fa62d05f6ebf8669c68f10c45bcbf831dee3ac58e26/diploSHIC-1.0.6-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,891 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/e4/cc/bd41c7a6d6ebb76d9364221e8540b16a363655b876378ec72fdb39697c0c/diploSHIC-1.0.6-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,891 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/0b/d2/bca24eb6a3a468354c9b4d503929fa45838384d486dbe582fdbbaf393910/diploSHIC-1.0.6-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,892 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/31/6e/ede09bdf93d39b524faeeac604932914cd03734e986d3b3dccfe0824812b/diploSHIC-1.0.6-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,892 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/8b/4e/fb194a2340eba54b09997f92e79f1d2ee876818bea5a912f0531d486b1c4/diploSHIC-1.0.6-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,893 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/51/4e/3b45650e096ac43251b145f9a073601fe97bf8d2f4740643b3b7a72ae5d9/diploSHIC-1.0.6-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,893 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/a6/e9/ce3552213c6e23256f1bcc47dfa0a0f1fbcd75c9e861f4cda49a09d99515/diploSHIC-1.0.6-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,894 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/49/a8/df48827452e1970eb816966d00be5ac763c381a9444e9cc944eb5065c85f/diploSHIC-1.0.6-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,894 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/5f/e7/2b384d3061f53df7b425f563fa553aa5811597bb2efb920b92503c9eb981/diploSHIC-1.0.6-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,895 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/ec/20/3edeabf335a0b937c0363a090a8188037b1172997dfedd6112c7f886caf4/diploSHIC-1.0.6-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,895 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/26/b4/9bf6910820d684ccff889fc7705ae13655e4532c4e871400c43a5d699645/diploSHIC-1.0.6-pp37-pypy37_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,896 Skipping link: No binaries permitted for diploshic: https://files.pythonhosted.org/packages/5b/39/83245325071bafacdbaf55d9c239f2fe9fa12eb95c2318212ec51d669879/diploSHIC-1.0.6-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/diploshic/) 2024-05-09T23:59:49,897 Found link https://files.pythonhosted.org/packages/93/a6/d23d6f2b1b7f0e901734d47393648f189ce94db2f5dd6acc900b4e9b7f65/diploshic-1.0.6.tar.gz (from https://pypi.org/simple/diploshic/), version: 1.0.6 2024-05-09T23:59:49,898 Fetching project page and analyzing links: https://www.piwheels.org/simple/diploshic/ 2024-05-09T23:59:49,898 Getting page https://www.piwheels.org/simple/diploshic/ 2024-05-09T23:59:49,899 Found index url https://www.piwheels.org/simple/ 2024-05-09T23:59:50,113 Fetched page https://www.piwheels.org/simple/diploshic/ as text/html 2024-05-09T23:59:50,119 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=d678d3f25afea80ef9c8ea0ac31533b388392df5cda0905cc3595b87bf8bf786 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,120 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=d678d3f25afea80ef9c8ea0ac31533b388392df5cda0905cc3595b87bf8bf786 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,120 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-1.0.5-cp37-cp37m-linux_armv6l.whl#sha256=41b8f2eb27aa014147ec307357fb070db640293ecf50397553fe67f90f679dc9 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,121 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-1.0.5-cp37-cp37m-linux_armv7l.whl#sha256=41b8f2eb27aa014147ec307357fb070db640293ecf50397553fe67f90f679dc9 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,121 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=9721921ddde6954e2407918dd25cd4fcaa8d89ac153a12ed226c256f808c4d8b (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,122 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=9721921ddde6954e2407918dd25cd4fcaa8d89ac153a12ed226c256f808c4d8b (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,122 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-1.0.4-cp37-cp37m-linux_armv6l.whl#sha256=04abfe638d4d7cb48a9b74e46209f62672ba5835d5d6537634ae3d769b25fa57 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,123 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=04abfe638d4d7cb48a9b74e46209f62672ba5835d5d6537634ae3d769b25fa57 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,123 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-1.0.4-cp39-cp39-linux_armv6l.whl#sha256=1fc428ac7a43bf2b02a855215762a74a10f385de3702c9704a082518bda620ca (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,124 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-1.0.4-cp39-cp39-linux_armv7l.whl#sha256=1fc428ac7a43bf2b02a855215762a74a10f385de3702c9704a082518bda620ca (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,124 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-0.333333-cp35-cp35m-linux_armv6l.whl#sha256=17d5686c935f1e6e5d1c9b3c5f658748662db2885d092c82bcbb80a6cc771733 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,125 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-0.333333-cp35-cp35m-linux_armv7l.whl#sha256=17d5686c935f1e6e5d1c9b3c5f658748662db2885d092c82bcbb80a6cc771733 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,126 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-0.333333-cp37-cp37m-linux_armv6l.whl#sha256=61a44d79f6f61847d45ce52e3b5dd47b3a9d2e9f0c8c8db908cca251fd409bbc (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,126 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-0.333333-cp37-cp37m-linux_armv7l.whl#sha256=61a44d79f6f61847d45ce52e3b5dd47b3a9d2e9f0c8c8db908cca251fd409bbc (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,127 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-0.333333-cp39-cp39-linux_armv6l.whl#sha256=7ca555d0e535d90dd61472ba10efbff673caf0eb8edaa0deb8a1a99ba67315b9 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,127 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-0.333333-cp39-cp39-linux_armv7l.whl#sha256=7ca555d0e535d90dd61472ba10efbff673caf0eb8edaa0deb8a1a99ba67315b9 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,127 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-0.4-cp37-cp37m-linux_armv6l.whl#sha256=c2eb642811ff1aeb2fe51be63c9916b27ca7b31041dd5719fe9720ffbd60a197 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,128 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-0.4-cp37-cp37m-linux_armv7l.whl#sha256=c2eb642811ff1aeb2fe51be63c9916b27ca7b31041dd5719fe9720ffbd60a197 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,128 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-0.4-cp39-cp39-linux_armv6l.whl#sha256=6e6ed02a4d79d462ccfed7a9472f6ef3db6c4bd148ffdc32a183a5d951bf5d03 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,129 Skipping link: No binaries permitted for diploshic: https://www.piwheels.org/simple/diploshic/diploSHIC-0.4-cp39-cp39-linux_armv7l.whl#sha256=6e6ed02a4d79d462ccfed7a9472f6ef3db6c4bd148ffdc32a183a5d951bf5d03 (from https://www.piwheels.org/simple/diploshic/) 2024-05-09T23:59:50,130 Skipping link: not a file: https://www.piwheels.org/simple/diploshic/ 2024-05-09T23:59:50,130 Skipping link: not a file: https://pypi.org/simple/diploshic/ 2024-05-09T23:59:50,149 Given no hashes to check 1 links for project 'diploshic': discarding no candidates 2024-05-09T23:59:50,167 Collecting diploshic==1.0.6 2024-05-09T23:59:50,170 Created temporary directory: /tmp/pip-unpack-mzkm6wr_ 2024-05-09T23:59:50,386 Downloading diploshic-1.0.6.tar.gz (13.9 MB) 2024-05-09T23:59:54,139 Added diploshic==1.0.6 from https://files.pythonhosted.org/packages/93/a6/d23d6f2b1b7f0e901734d47393648f189ce94db2f5dd6acc900b4e9b7f65/diploshic-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-y0jlgdk9' 2024-05-09T23:59:54,142 Created temporary directory: /tmp/pip-build-env-mmquh4yf 2024-05-09T23:59:54,147 Installing build dependencies: started 2024-05-09T23:59:54,148 Running command pip subprocess to install build dependencies 2024-05-09T23:59:55,334 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-09T23:59:55,857 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-09T23:59:57,379 Collecting setuptools 2024-05-09T23:59:57,413 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-09T23:59:58,064 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-05-09T23:59:58,068 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-05-09T23:59:58,072 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-05-09T23:59:58,076 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-05-09T23:59:58,080 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-05-09T23:59:58,355 Collecting numpy 2024-05-09T23:59:58,372 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp311-cp311-linux_armv7l.whl (5.6 MB) 2024-05-10T00:00:02,614 Installing collected packages: setuptools, numpy 2024-05-10T00:01:10,446 Creating /tmp/pip-build-env-mmquh4yf/overlay/local/bin 2024-05-10T00:01:10,448 changing mode of /tmp/pip-build-env-mmquh4yf/overlay/local/bin/f2py to 755 2024-05-10T00:01:10,482 Successfully installed numpy-1.26.4 setuptools-69.5.1 2024-05-10T00:01:11,063 Installing build dependencies: finished with status 'done' 2024-05-10T00:01:11,066 Getting requirements to build wheel: started 2024-05-10T00:01:11,068 Running command Getting requirements to build wheel 2024-05-10T00:01:11,997 :2: DeprecationWarning: 2024-05-10T00:01:11,998 `numpy.distutils` is deprecated since NumPy 1.23.0, as a result 2024-05-10T00:01:11,998 of the deprecation of `distutils` itself. It will be removed for 2024-05-10T00:01:11,999 Python >= 3.12. For older Python versions it will remain present. 2024-05-10T00:01:12,000 It is recommended to use `setuptools < 60.0` for those Python versions. 2024-05-10T00:01:12,001 For more details, see: 2024-05-10T00:01:12,001 https://numpy.org/devdocs/reference/distutils_status_migration.html 2024-05-10T00:01:12,429 running egg_info 2024-05-10T00:01:12,430 running build_src 2024-05-10T00:01:12,432 INFO: build_src 2024-05-10T00:01:12,432 INFO: building extension "diploshic.shicstats" sources 2024-05-10T00:01:12,433 creating build 2024-05-10T00:01:12,434 creating build/src.linux-armv7l-3.11 2024-05-10T00:01:12,434 creating build/src.linux-armv7l-3.11/diploshic 2024-05-10T00:01:12,435 INFO: f2py options: [] 2024-05-10T00:01:12,436 INFO: f2py: diploshic/shicstats.pyf 2024-05-10T00:01:12,778 Reading fortran codes... 2024-05-10T00:01:12,779 Reading file 'diploshic/shicstats.pyf' (format:free) 2024-05-10T00:01:12,779 Line #6 in diploshic/shicstats.pyf:" intent(c) " 2024-05-10T00:01:12,780 All arguments will have attribute intent(c) 2024-05-10T00:01:12,780 Line #14 in diploshic/shicstats.pyf:" intent(c) " 2024-05-10T00:01:12,781 All arguments will have attribute intent(c) 2024-05-10T00:01:12,781 Line #21 in diploshic/shicstats.pyf:" intent(c) " 2024-05-10T00:01:12,782 All arguments will have attribute intent(c) 2024-05-10T00:01:12,782 Line #28 in diploshic/shicstats.pyf:" intent(c) " 2024-05-10T00:01:12,783 All arguments will have attribute intent(c) 2024-05-10T00:01:12,783 Line #36 in diploshic/shicstats.pyf:" intent(c) " 2024-05-10T00:01:12,784 All arguments will have attribute intent(c) 2024-05-10T00:01:12,785 Line #44 in diploshic/shicstats.pyf:" intent(c) " 2024-05-10T00:01:12,785 All arguments will have attribute intent(c) 2024-05-10T00:01:12,786 crackline: groupcounter=1 groupname={0: '', 1: 'python module', 2: 'interface', 3: 'subroutine'} 2024-05-10T00:01:12,786 crackline: Mismatch of blocks encountered. Trying to fix it by assuming "end" statement. 2024-05-10T00:01:12,786 Post-processing... 2024-05-10T00:01:12,787 Block: shicstats 2024-05-10T00:01:12,787 Block: computeR2Matrix 2024-05-10T00:01:12,788 Block: omega 2024-05-10T00:01:12,788 Block: ZnS 2024-05-10T00:01:12,789 Block: pairwiseDiffs 2024-05-10T00:01:12,789 In: diploshic/shicstats.pyf:shicstats:unknown_interface:pairwiseDiffs 2024-05-10T00:01:12,789 analyzevars: could not parse dimension for variable 'nSamps*(nSamps-1)/2' 2024-05-10T00:01:12,790 Block: pairwiseDiffsDiplo 2024-05-10T00:01:12,790 In: diploshic/shicstats.pyf:shicstats:unknown_interface:pairwiseDiffsDiplo 2024-05-10T00:01:12,791 analyzevars: could not parse dimension for variable 'nSamps*(nSamps-1)/2' 2024-05-10T00:01:12,791 Block: getHaplotypeFreqSpec 2024-05-10T00:01:12,792 Applying post-processing hooks... 2024-05-10T00:01:12,792 character_backward_compatibility_hook 2024-05-10T00:01:12,792 Post-processing (stage 2)... 2024-05-10T00:01:12,793 Building modules... 2024-05-10T00:01:12,793 Building module "shicstats"... 2024-05-10T00:01:12,794 Generating possibly empty wrappers" 2024-05-10T00:01:12,794 Maybe empty "shicstats-f2pywrappers.f" 2024-05-10T00:01:12,794 Constructing wrapper function "computeR2Matrix"... 2024-05-10T00:01:12,795 r2Matrix = computeR2Matrix(haps) 2024-05-10T00:01:12,796 Generating possibly empty wrappers" 2024-05-10T00:01:12,796 Maybe empty "shicstats-f2pywrappers.f" 2024-05-10T00:01:12,797 Constructing wrapper function "omega"... 2024-05-10T00:01:12,797 omegaMax = omega(r2Matrix) 2024-05-10T00:01:12,798 Generating possibly empty wrappers" 2024-05-10T00:01:12,798 Maybe empty "shicstats-f2pywrappers.f" 2024-05-10T00:01:12,799 Constructing wrapper function "ZnS"... 2024-05-10T00:01:12,800 zns = ZnS(r2Matrix) 2024-05-10T00:01:12,800 Generating possibly empty wrappers" 2024-05-10T00:01:12,801 Maybe empty "shicstats-f2pywrappers.f" 2024-05-10T00:01:12,802 Constructing wrapper function "pairwiseDiffs"... 2024-05-10T00:01:12,802 diffLs = pairwiseDiffs(haps) 2024-05-10T00:01:12,803 Generating possibly empty wrappers" 2024-05-10T00:01:12,803 Maybe empty "shicstats-f2pywrappers.f" 2024-05-10T00:01:12,804 Constructing wrapper function "pairwiseDiffsDiplo"... 2024-05-10T00:01:12,804 diffLs = pairwiseDiffsDiplo(haps) 2024-05-10T00:01:12,805 Generating possibly empty wrappers" 2024-05-10T00:01:12,805 Maybe empty "shicstats-f2pywrappers.f" 2024-05-10T00:01:12,806 Constructing wrapper function "getHaplotypeFreqSpec"... 2024-05-10T00:01:12,806 hapCounts = getHaplotypeFreqSpec(haps) 2024-05-10T00:01:12,807 Wrote C/API module "shicstats" to file "build/src.linux-armv7l-3.11/diploshic/shicstatsmodule.c" 2024-05-10T00:01:12,807 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic/fortranobject.c' to sources. 2024-05-10T00:01:12,808 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic' to include_dirs. 2024-05-10T00:01:12,808 creating build/src.linux-armv7l-3.11/build 2024-05-10T00:01:12,809 creating build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11 2024-05-10T00:01:12,810 creating build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic 2024-05-10T00:01:12,810 copying /tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic 2024-05-10T00:01:12,811 copying /tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic 2024-05-10T00:01:12,812 INFO: adding 'build/src.linux-armv7l-3.11/diploshic/shicstats-f2pywrappers.f' to sources. 2024-05-10T00:01:12,812 INFO: build_src: building npy-pkg config files 2024-05-10T00:01:12,812 /tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-10T00:01:12,813 !! 2024-05-10T00:01:12,813 ******************************************************************************** 2024-05-10T00:01:12,814 Please avoid running ``setup.py`` directly. 2024-05-10T00:01:12,814 Instead, use pypa/build, pypa/installer or other 2024-05-10T00:01:12,815 standards-based tools. 2024-05-10T00:01:12,815 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-10T00:01:12,816 ******************************************************************************** 2024-05-10T00:01:12,816 !! 2024-05-10T00:01:12,817 self.initialize_options() 2024-05-10T00:01:12,823 writing diploSHIC.egg-info/PKG-INFO 2024-05-10T00:01:12,826 writing dependency_links to diploSHIC.egg-info/dependency_links.txt 2024-05-10T00:01:12,828 writing requirements to diploSHIC.egg-info/requires.txt 2024-05-10T00:01:12,829 writing top-level names to diploSHIC.egg-info/top_level.txt 2024-05-10T00:01:12,835 /tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/setuptools/command/sdist.py:115: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`. 2024-05-10T00:01:12,836 !! 2024-05-10T00:01:12,837 ******************************************************************************** 2024-05-10T00:01:12,837 Custom 'build_py' does not implement 'get_data_files_without_manifest'. 2024-05-10T00:01:12,838 Please extend command classes from setuptools instead of distutils. 2024-05-10T00:01:12,839 See https://peps.python.org/pep-0632/ for details. 2024-05-10T00:01:12,840 ******************************************************************************** 2024-05-10T00:01:12,841 !! 2024-05-10T00:01:12,842 self._add_data_files(self._safe_data_files(build_py)) 2024-05-10T00:01:12,842 INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2024-05-10T00:01:12,843 INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2024-05-10T00:01:12,843 reading manifest file 'diploSHIC.egg-info/SOURCES.txt' 2024-05-10T00:01:12,846 reading manifest template 'MANIFEST.in' 2024-05-10T00:01:12,847 warning: no files found matching 'diploshic/testEmpirical.fvec' 2024-05-10T00:01:12,849 adding license file 'LICENSE' 2024-05-10T00:01:12,852 writing manifest file 'diploSHIC.egg-info/SOURCES.txt' 2024-05-10T00:01:13,007 Getting requirements to build wheel: finished with status 'done' 2024-05-10T00:01:13,017 Installing backend dependencies: started 2024-05-10T00:01:13,018 Running command pip subprocess to install backend dependencies 2024-05-10T00:01:14,226 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-10T00:01:14,780 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-10T00:01:15,400 Collecting wheel 2024-05-10T00:01:15,493 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-10T00:01:17,768 Installing collected packages: wheel 2024-05-10T00:01:17,995 Creating /tmp/pip-build-env-mmquh4yf/normal/local/bin 2024-05-10T00:01:17,998 changing mode of /tmp/pip-build-env-mmquh4yf/normal/local/bin/wheel to 755 2024-05-10T00:01:18,010 Successfully installed wheel-0.43.0 2024-05-10T00:01:18,475 Installing backend dependencies: finished with status 'done' 2024-05-10T00:01:18,477 Created temporary directory: /tmp/pip-modern-metadata-_pzq6y67 2024-05-10T00:01:18,480 Preparing metadata (pyproject.toml): started 2024-05-10T00:01:18,481 Running command Preparing metadata (pyproject.toml) 2024-05-10T00:01:19,226 :2: DeprecationWarning: 2024-05-10T00:01:19,227 `numpy.distutils` is deprecated since NumPy 1.23.0, as a result 2024-05-10T00:01:19,227 of the deprecation of `distutils` itself. It will be removed for 2024-05-10T00:01:19,228 Python >= 3.12. For older Python versions it will remain present. 2024-05-10T00:01:19,228 It is recommended to use `setuptools < 60.0` for those Python versions. 2024-05-10T00:01:19,228 For more details, see: 2024-05-10T00:01:19,229 https://numpy.org/devdocs/reference/distutils_status_migration.html 2024-05-10T00:01:19,509 running dist_info 2024-05-10T00:01:19,510 running build_src 2024-05-10T00:01:19,511 INFO: build_src 2024-05-10T00:01:19,512 INFO: building extension "diploshic.shicstats" sources 2024-05-10T00:01:19,512 INFO: f2py options: [] 2024-05-10T00:01:19,513 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic/fortranobject.c' to sources. 2024-05-10T00:01:19,513 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic' to include_dirs. 2024-05-10T00:01:19,608 copying /tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic 2024-05-10T00:01:19,611 copying /tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic 2024-05-10T00:01:19,613 INFO: adding 'build/src.linux-armv7l-3.11/diploshic/shicstats-f2pywrappers.f' to sources. 2024-05-10T00:01:19,614 INFO: build_src: building npy-pkg config files 2024-05-10T00:01:19,614 /tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-10T00:01:19,615 !! 2024-05-10T00:01:19,616 ******************************************************************************** 2024-05-10T00:01:19,617 Please avoid running ``setup.py`` directly. 2024-05-10T00:01:19,618 Instead, use pypa/build, pypa/installer or other 2024-05-10T00:01:19,618 standards-based tools. 2024-05-10T00:01:19,620 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-10T00:01:19,620 ******************************************************************************** 2024-05-10T00:01:19,622 !! 2024-05-10T00:01:19,622 self.initialize_options() 2024-05-10T00:01:19,638 creating /tmp/pip-modern-metadata-_pzq6y67/diploSHIC.egg-info 2024-05-10T00:01:19,643 writing /tmp/pip-modern-metadata-_pzq6y67/diploSHIC.egg-info/PKG-INFO 2024-05-10T00:01:19,647 writing dependency_links to /tmp/pip-modern-metadata-_pzq6y67/diploSHIC.egg-info/dependency_links.txt 2024-05-10T00:01:19,649 writing requirements to /tmp/pip-modern-metadata-_pzq6y67/diploSHIC.egg-info/requires.txt 2024-05-10T00:01:19,650 writing top-level names to /tmp/pip-modern-metadata-_pzq6y67/diploSHIC.egg-info/top_level.txt 2024-05-10T00:01:19,651 writing manifest file '/tmp/pip-modern-metadata-_pzq6y67/diploSHIC.egg-info/SOURCES.txt' 2024-05-10T00:01:19,657 /tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/setuptools/command/sdist.py:115: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`. 2024-05-10T00:01:19,657 !! 2024-05-10T00:01:19,658 ******************************************************************************** 2024-05-10T00:01:19,659 Custom 'build_py' does not implement 'get_data_files_without_manifest'. 2024-05-10T00:01:19,659 Please extend command classes from setuptools instead of distutils. 2024-05-10T00:01:19,661 See https://peps.python.org/pep-0632/ for details. 2024-05-10T00:01:19,661 ******************************************************************************** 2024-05-10T00:01:19,662 !! 2024-05-10T00:01:19,663 self._add_data_files(self._safe_data_files(build_py)) 2024-05-10T00:01:19,663 INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2024-05-10T00:01:19,663 INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2024-05-10T00:01:19,665 reading manifest file '/tmp/pip-modern-metadata-_pzq6y67/diploSHIC.egg-info/SOURCES.txt' 2024-05-10T00:01:19,667 reading manifest template 'MANIFEST.in' 2024-05-10T00:01:19,667 warning: no files found matching 'diploshic/testEmpirical.fvec' 2024-05-10T00:01:19,670 adding license file 'LICENSE' 2024-05-10T00:01:19,672 writing manifest file '/tmp/pip-modern-metadata-_pzq6y67/diploSHIC.egg-info/SOURCES.txt' 2024-05-10T00:01:19,673 creating '/tmp/pip-modern-metadata-_pzq6y67/diploSHIC-1.0.6.dist-info' 2024-05-10T00:01:19,941 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-10T00:01:19,946 Source in /tmp/pip-wheel-d7vm7we4/diploshic_1fe05434548445268abff5aa59682eaf has version 1.0.6, which satisfies requirement diploshic==1.0.6 from https://files.pythonhosted.org/packages/93/a6/d23d6f2b1b7f0e901734d47393648f189ce94db2f5dd6acc900b4e9b7f65/diploshic-1.0.6.tar.gz 2024-05-10T00:01:19,947 Removed diploshic==1.0.6 from https://files.pythonhosted.org/packages/93/a6/d23d6f2b1b7f0e901734d47393648f189ce94db2f5dd6acc900b4e9b7f65/diploshic-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-y0jlgdk9' 2024-05-10T00:01:19,952 Created temporary directory: /tmp/pip-unpack-s7ujv8a7 2024-05-10T00:01:19,953 Created temporary directory: /tmp/pip-unpack-r73_fxpt 2024-05-10T00:01:19,964 Building wheels for collected packages: diploshic 2024-05-10T00:01:19,968 Created temporary directory: /tmp/pip-wheel-fjogjj55 2024-05-10T00:01:19,969 Destination directory: /tmp/pip-wheel-fjogjj55 2024-05-10T00:01:19,971 Building wheel for diploshic (pyproject.toml): started 2024-05-10T00:01:19,973 Running command Building wheel for diploshic (pyproject.toml) 2024-05-10T00:01:20,691 :2: DeprecationWarning: 2024-05-10T00:01:20,692 `numpy.distutils` is deprecated since NumPy 1.23.0, as a result 2024-05-10T00:01:20,693 of the deprecation of `distutils` itself. It will be removed for 2024-05-10T00:01:20,694 Python >= 3.12. For older Python versions it will remain present. 2024-05-10T00:01:20,694 It is recommended to use `setuptools < 60.0` for those Python versions. 2024-05-10T00:01:20,695 For more details, see: 2024-05-10T00:01:20,695 https://numpy.org/devdocs/reference/distutils_status_migration.html 2024-05-10T00:01:20,988 running bdist_wheel 2024-05-10T00:01:20,993 running build 2024-05-10T00:01:20,994 running config_cc 2024-05-10T00:01:20,995 INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2024-05-10T00:01:20,995 running config_fc 2024-05-10T00:01:20,996 INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2024-05-10T00:01:20,996 running build_src 2024-05-10T00:01:20,997 INFO: build_src 2024-05-10T00:01:20,998 INFO: building extension "diploshic.shicstats" sources 2024-05-10T00:01:20,998 INFO: f2py options: [] 2024-05-10T00:01:20,999 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic/fortranobject.c' to sources. 2024-05-10T00:01:20,999 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic' to include_dirs. 2024-05-10T00:01:21,088 copying /tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic 2024-05-10T00:01:21,092 copying /tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic 2024-05-10T00:01:21,094 INFO: adding 'build/src.linux-armv7l-3.11/diploshic/shicstats-f2pywrappers.f' to sources. 2024-05-10T00:01:21,094 INFO: build_src: building npy-pkg config files 2024-05-10T00:01:21,116 running build_py 2024-05-10T00:01:21,118 creating build/lib.linux-armv7l-cpython-311 2024-05-10T00:01:21,118 creating build/lib.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,119 copying diploshic/makeFeatureVecsForSingleMs_ogSHIC.py -> build/lib.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,121 copying diploshic/fvTools.py -> build/lib.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,124 copying diploshic/generateSimLaunchScript.py -> build/lib.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,126 copying diploshic/makeFeatureVecsForSingleMsDiploid.py -> build/lib.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,128 copying diploshic/makeTrainingSets.py -> build/lib.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,130 copying diploshic/misc.py -> build/lib.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,132 copying diploshic/makeFeatureVecsForChrArmFromVcf_ogSHIC.py -> build/lib.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,134 copying diploshic/setup.py -> build/lib.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,136 copying diploshic/makeFeatureVecsForChrArmFromVcfDiploid.py -> build/lib.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,138 copying diploshic/msTools.py -> build/lib.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,140 copying diploshic/__init__.py -> build/lib.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,142 running build_ext 2024-05-10T00:01:21,147 INFO: customize UnixCCompiler 2024-05-10T00:01:21,148 INFO: customize UnixCCompiler using build_ext 2024-05-10T00:01:21,273 INFO: CCompilerOpt.cc_test_cexpr[1098] : testing compiler expression defined(__ARM_ARCH_7__) || defined(__ARM_ARCH_7A__) 2024-05-10T00:01:21,275 INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2024-05-10T00:01:21,276 creating /tmp/tmpn05wk99q/tmp 2024-05-10T00:01:21,276 creating /tmp/tmpn05wk99q/tmp/tmpn05wk99q 2024-05-10T00:01:21,277 INFO: compile options: '-I/usr/include/python3.11 -c' 2024-05-10T00:01:21,345 WARN: CCompilerOpt.dist_test[637] : CCompilerOpt._dist_test_spawn[771] : Command (arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c /tmp/tmpn05wk99q/npy_dist_test_cexpr.c -o /tmp/tmpn05wk99q/tmp/tmpn05wk99q/npy_dist_test_cexpr.o -MMD -MF /tmp/tmpn05wk99q/tmp/tmpn05wk99q/npy_dist_test_cexpr.o.d) failed with exit status 1 output -> 2024-05-10T00:01:21,346 /tmp/tmpn05wk99q/npy_dist_test_cexpr.c:2:6: error: #error "unsupported expression" 2024-05-10T00:01:21,346 2 | #error "unsupported expression" 2024-05-10T00:01:21,347 | ^~~~~ 2024-05-10T00:01:21,353 WARN: CCompilerOpt.cc_test_cexpr[1109] : testing failed 2024-05-10T00:01:21,363 WARN: CCompilerOpt.__init__[1025] : unable to detect CPU architecture which lead to disable the optimization. check dist_info:<< 2024-05-10T00:01:21,363 ('linux-armv7l', 'arm-linux-gnueabihf-gcc', '-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2') 2024-05-10T00:01:21,364 >> 2024-05-10T00:01:21,371 INFO: CCompilerOpt.cc_test_flags[1086] : testing flags (-march=native) 2024-05-10T00:01:21,372 INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2024-05-10T00:01:21,373 creating /tmp/tmpn05wk99q/tmp/pip-build-env-mmquh4yf 2024-05-10T00:01:21,373 creating /tmp/tmpn05wk99q/tmp/pip-build-env-mmquh4yf/overlay 2024-05-10T00:01:21,374 creating /tmp/tmpn05wk99q/tmp/pip-build-env-mmquh4yf/overlay/local 2024-05-10T00:01:21,375 creating /tmp/tmpn05wk99q/tmp/pip-build-env-mmquh4yf/overlay/local/lib 2024-05-10T00:01:21,375 creating /tmp/tmpn05wk99q/tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11 2024-05-10T00:01:21,375 creating /tmp/tmpn05wk99q/tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages 2024-05-10T00:01:21,376 creating /tmp/tmpn05wk99q/tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/numpy 2024-05-10T00:01:21,376 creating /tmp/tmpn05wk99q/tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/numpy/distutils 2024-05-10T00:01:21,377 creating /tmp/tmpn05wk99q/tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/numpy/distutils/checks 2024-05-10T00:01:21,377 INFO: compile options: '-I/usr/include/python3.11 -c' 2024-05-10T00:01:21,378 extra options: '-march=native' 2024-05-10T00:01:21,442 INFO: CCompilerOpt.cc_test_flags[1086] : testing flags (-O3) 2024-05-10T00:01:21,442 INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2024-05-10T00:01:21,444 INFO: compile options: '-I/usr/include/python3.11 -c' 2024-05-10T00:01:21,444 extra options: '-O3' 2024-05-10T00:01:21,506 INFO: CCompilerOpt.cc_test_flags[1086] : testing flags (-Werror) 2024-05-10T00:01:21,507 INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2024-05-10T00:01:21,508 INFO: compile options: '-I/usr/include/python3.11 -c' 2024-05-10T00:01:21,508 extra options: '-Werror' 2024-05-10T00:01:21,570 INFO: CCompilerOpt.__init__[1795] : check requested baseline 2024-05-10T00:01:21,578 INFO: CCompilerOpt.__init__[1804] : check requested dispatch-able features 2024-05-10T00:01:21,586 INFO: CCompilerOpt.__init__[1820] : initialize targets groups 2024-05-10T00:01:21,594 INFO: CCompilerOpt.__init__[1822] : parse target group simd_test 2024-05-10T00:01:21,602 INFO: CCompilerOpt._parse_target_tokens[2033] : skip targets ((AVX2 FMA3) FMA4 VXE2 VSX3 AVX512_SKX SSE2 VSX VSX4 NEON ASIMD VX AVX512F VSX2 VXE XOP SSE42) not part of baseline or dispatch-able features 2024-05-10T00:01:21,610 INFO: CCompilerOpt.generate_dispatch_header[2366] : generate CPU dispatch header: (build/src.linux-armv7l-3.11/numpy/distutils/include/npy_cpu_dispatch_config.h) 2024-05-10T00:01:21,618 WARN: CCompilerOpt.generate_dispatch_header[2375] : dispatch header dir build/src.linux-armv7l-3.11/numpy/distutils/include does not exist, creating it 2024-05-10T00:01:21,654 INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2024-05-10T00:01:21,655 INFO: customize ArmFlangCompiler 2024-05-10T00:01:21,657 WARN: Could not locate executable armflang 2024-05-10T00:01:21,658 INFO: customize Gnu95FCompiler 2024-05-10T00:01:21,660 INFO: Found executable /usr/bin/gfortran 2024-05-10T00:01:21,700 INFO: customize Gnu95FCompiler 2024-05-10T00:01:21,719 INFO: customize Gnu95FCompiler using build_ext 2024-05-10T00:01:21,720 INFO: building 'diploshic.shicstats' extension 2024-05-10T00:01:21,721 INFO: compiling C sources 2024-05-10T00:01:21,721 INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2024-05-10T00:01:21,722 creating build/temp.linux-armv7l-cpython-311/build 2024-05-10T00:01:21,723 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11 2024-05-10T00:01:21,723 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/diploshic 2024-05-10T00:01:21,724 creating build/temp.linux-armv7l-cpython-311/diploshic 2024-05-10T00:01:21,725 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/build 2024-05-10T00:01:21,725 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11 2024-05-10T00:01:21,726 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic 2024-05-10T00:01:21,726 INFO: compile options: '-Ibuild/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic -I/tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' 2024-05-10T00:01:21,732 INFO: arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/diploshic/shicstatsmodule.c 2024-05-10T00:01:21,733 INFO: arm-linux-gnueabihf-gcc: diploshic/utils.c 2024-05-10T00:01:21,735 INFO: arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic/fortranobject.c 2024-05-10T00:01:23,881 INFO: compiling Fortran sources 2024-05-10T00:01:23,882 INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2024-05-10T00:01:23,882 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2024-05-10T00:01:23,883 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2024-05-10T00:01:23,883 INFO: compile options: '-Ibuild/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic -I/tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' 2024-05-10T00:01:23,884 INFO: gfortran:f77: build/src.linux-armv7l-3.11/diploshic/shicstats-f2pywrappers.f 2024-05-10T00:01:24,223 INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/diploshic/shicstatsmodule.o build/temp.linux-armv7l-cpython-311/diploshic/utils.o build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/diploshic/fortranobject.o build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/diploshic/shicstats-f2pywrappers.o -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/arm-linux-gnueabihf -lgfortran -o build/lib.linux-armv7l-cpython-311/diploshic/shicstats.cpython-311-arm-linux-gnueabihf.so 2024-05-10T00:01:24,356 running build_scripts 2024-05-10T00:01:24,357 creating build/scripts.linux-armv7l-3.11 2024-05-10T00:01:24,358 copying and adjusting diploshic/diploSHIC -> build/scripts.linux-armv7l-3.11 2024-05-10T00:01:24,361 copying diploshic/makeFeatureVecsForChrArmFromVcfDiploid.py -> build/scripts.linux-armv7l-3.11 2024-05-10T00:01:24,364 copying diploshic/makeFeatureVecsForChrArmFromVcf_ogSHIC.py -> build/scripts.linux-armv7l-3.11 2024-05-10T00:01:24,366 copying diploshic/makeFeatureVecsForSingleMsDiploid.py -> build/scripts.linux-armv7l-3.11 2024-05-10T00:01:24,369 copying diploshic/makeFeatureVecsForSingleMs_ogSHIC.py -> build/scripts.linux-armv7l-3.11 2024-05-10T00:01:24,371 copying diploshic/makeTrainingSets.py -> build/scripts.linux-armv7l-3.11 2024-05-10T00:01:24,373 changing mode of build/scripts.linux-armv7l-3.11/diploSHIC from 644 to 755 2024-05-10T00:01:24,373 changing mode of build/scripts.linux-armv7l-3.11/makeFeatureVecsForChrArmFromVcfDiploid.py from 644 to 755 2024-05-10T00:01:24,374 changing mode of build/scripts.linux-armv7l-3.11/makeFeatureVecsForChrArmFromVcf_ogSHIC.py from 644 to 755 2024-05-10T00:01:24,374 changing mode of build/scripts.linux-armv7l-3.11/makeFeatureVecsForSingleMsDiploid.py from 644 to 755 2024-05-10T00:01:24,375 changing mode of build/scripts.linux-armv7l-3.11/makeFeatureVecsForSingleMs_ogSHIC.py from 644 to 755 2024-05-10T00:01:24,376 changing mode of build/scripts.linux-armv7l-3.11/makeTrainingSets.py from 644 to 755 2024-05-10T00:01:24,380 installing to build/bdist.linux-armv7l/wheel 2024-05-10T00:01:24,381 running install 2024-05-10T00:01:24,404 running install_lib 2024-05-10T00:01:24,412 creating build/bdist.linux-armv7l 2024-05-10T00:01:24,412 creating build/bdist.linux-armv7l/wheel 2024-05-10T00:01:24,413 creating build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,414 copying build/lib.linux-armv7l-cpython-311/diploshic/makeFeatureVecsForSingleMs_ogSHIC.py -> build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,417 copying build/lib.linux-armv7l-cpython-311/diploshic/fvTools.py -> build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,419 copying build/lib.linux-armv7l-cpython-311/diploshic/generateSimLaunchScript.py -> build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,421 copying build/lib.linux-armv7l-cpython-311/diploshic/shicstats.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,425 copying build/lib.linux-armv7l-cpython-311/diploshic/makeFeatureVecsForSingleMsDiploid.py -> build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,427 copying build/lib.linux-armv7l-cpython-311/diploshic/makeTrainingSets.py -> build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,429 copying build/lib.linux-armv7l-cpython-311/diploshic/misc.py -> build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,431 copying build/lib.linux-armv7l-cpython-311/diploshic/makeFeatureVecsForChrArmFromVcf_ogSHIC.py -> build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,433 copying build/lib.linux-armv7l-cpython-311/diploshic/setup.py -> build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,435 copying build/lib.linux-armv7l-cpython-311/diploshic/makeFeatureVecsForChrArmFromVcfDiploid.py -> build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,438 copying build/lib.linux-armv7l-cpython-311/diploshic/msTools.py -> build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,440 copying build/lib.linux-armv7l-cpython-311/diploshic/__init__.py -> build/bdist.linux-armv7l/wheel/diploshic 2024-05-10T00:01:24,441 running install_egg_info 2024-05-10T00:01:24,446 running egg_info 2024-05-10T00:01:24,450 writing diploSHIC.egg-info/PKG-INFO 2024-05-10T00:01:24,453 writing dependency_links to diploSHIC.egg-info/dependency_links.txt 2024-05-10T00:01:24,455 writing requirements to diploSHIC.egg-info/requires.txt 2024-05-10T00:01:24,455 writing top-level names to diploSHIC.egg-info/top_level.txt 2024-05-10T00:01:24,459 /tmp/pip-build-env-mmquh4yf/overlay/local/lib/python3.11/dist-packages/setuptools/command/sdist.py:115: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`. 2024-05-10T00:01:24,460 !! 2024-05-10T00:01:24,461 ******************************************************************************** 2024-05-10T00:01:24,461 Custom 'build_py' does not implement 'get_data_files_without_manifest'. 2024-05-10T00:01:24,462 Please extend command classes from setuptools instead of distutils. 2024-05-10T00:01:24,463 See https://peps.python.org/pep-0632/ for details. 2024-05-10T00:01:24,464 ******************************************************************************** 2024-05-10T00:01:24,465 !! 2024-05-10T00:01:24,466 self._add_data_files(self._safe_data_files(build_py)) 2024-05-10T00:01:24,467 reading manifest file 'diploSHIC.egg-info/SOURCES.txt' 2024-05-10T00:01:24,469 reading manifest template 'MANIFEST.in' 2024-05-10T00:01:24,470 warning: no files found matching 'diploshic/testEmpirical.fvec' 2024-05-10T00:01:24,471 adding license file 'LICENSE' 2024-05-10T00:01:24,474 writing manifest file 'diploSHIC.egg-info/SOURCES.txt' 2024-05-10T00:01:24,475 Copying diploSHIC.egg-info to build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6-py3.11.egg-info 2024-05-10T00:01:24,487 running install_scripts 2024-05-10T00:01:24,488 creating build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data 2024-05-10T00:01:24,488 creating build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts 2024-05-10T00:01:24,489 copying build/scripts.linux-armv7l-3.11/makeFeatureVecsForSingleMs_ogSHIC.py -> build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts 2024-05-10T00:01:24,492 copying build/scripts.linux-armv7l-3.11/makeFeatureVecsForSingleMsDiploid.py -> build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts 2024-05-10T00:01:24,494 copying build/scripts.linux-armv7l-3.11/makeTrainingSets.py -> build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts 2024-05-10T00:01:24,496 copying build/scripts.linux-armv7l-3.11/makeFeatureVecsForChrArmFromVcf_ogSHIC.py -> build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts 2024-05-10T00:01:24,499 copying build/scripts.linux-armv7l-3.11/makeFeatureVecsForChrArmFromVcfDiploid.py -> build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts 2024-05-10T00:01:24,501 copying build/scripts.linux-armv7l-3.11/diploSHIC -> build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts 2024-05-10T00:01:24,503 changing mode of build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts/makeFeatureVecsForSingleMs_ogSHIC.py to 755 2024-05-10T00:01:24,503 changing mode of build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts/makeFeatureVecsForSingleMsDiploid.py to 755 2024-05-10T00:01:24,504 changing mode of build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts/makeTrainingSets.py to 755 2024-05-10T00:01:24,504 changing mode of build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts/makeFeatureVecsForChrArmFromVcf_ogSHIC.py to 755 2024-05-10T00:01:24,505 changing mode of build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts/makeFeatureVecsForChrArmFromVcfDiploid.py to 755 2024-05-10T00:01:24,505 changing mode of build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.data/scripts/diploSHIC to 755 2024-05-10T00:01:24,506 running install_clib 2024-05-10T00:01:24,506 INFO: customize UnixCCompiler 2024-05-10T00:01:25,502 creating build/bdist.linux-armv7l/wheel/diploSHIC-1.0.6.dist-info/WHEEL 2024-05-10T00:01:25,507 creating '/tmp/pip-wheel-fjogjj55/.tmp-auv6s9mz/diploSHIC-1.0.6-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-10T00:01:25,517 adding 'diploSHIC-1.0.6.data/scripts/diploSHIC' 2024-05-10T00:01:25,521 adding 'diploSHIC-1.0.6.data/scripts/makeFeatureVecsForChrArmFromVcfDiploid.py' 2024-05-10T00:01:25,526 adding 'diploSHIC-1.0.6.data/scripts/makeFeatureVecsForChrArmFromVcf_ogSHIC.py' 2024-05-10T00:01:25,528 adding 'diploSHIC-1.0.6.data/scripts/makeFeatureVecsForSingleMsDiploid.py' 2024-05-10T00:01:25,530 adding 'diploSHIC-1.0.6.data/scripts/makeFeatureVecsForSingleMs_ogSHIC.py' 2024-05-10T00:01:25,531 adding 'diploSHIC-1.0.6.data/scripts/makeTrainingSets.py' 2024-05-10T00:01:25,534 adding 'diploshic/__init__.py' 2024-05-10T00:01:25,539 adding 'diploshic/fvTools.py' 2024-05-10T00:01:25,540 adding 'diploshic/generateSimLaunchScript.py' 2024-05-10T00:01:25,542 adding 'diploshic/makeFeatureVecsForChrArmFromVcfDiploid.py' 2024-05-10T00:01:25,544 adding 'diploshic/makeFeatureVecsForChrArmFromVcf_ogSHIC.py' 2024-05-10T00:01:25,546 adding 'diploshic/makeFeatureVecsForSingleMsDiploid.py' 2024-05-10T00:01:25,548 adding 'diploshic/makeFeatureVecsForSingleMs_ogSHIC.py' 2024-05-10T00:01:25,549 adding 'diploshic/makeTrainingSets.py' 2024-05-10T00:01:25,551 adding 'diploshic/misc.py' 2024-05-10T00:01:25,553 adding 'diploshic/msTools.py' 2024-05-10T00:01:25,554 adding 'diploshic/setup.py' 2024-05-10T00:01:25,579 adding 'diploshic/shicstats.cpython-311-arm-linux-gnueabihf.so' 2024-05-10T00:01:25,581 adding 'diploSHIC-1.0.6.dist-info/LICENSE' 2024-05-10T00:01:25,584 adding 'diploSHIC-1.0.6.dist-info/METADATA' 2024-05-10T00:01:25,585 adding 'diploSHIC-1.0.6.dist-info/WHEEL' 2024-05-10T00:01:25,586 adding 'diploSHIC-1.0.6.dist-info/top_level.txt' 2024-05-10T00:01:25,587 adding 'diploSHIC-1.0.6.dist-info/RECORD' 2024-05-10T00:01:25,589 removing build/bdist.linux-armv7l/wheel 2024-05-10T00:01:25,598 INFO: 2024-05-10T00:01:25,599 ########### EXT COMPILER OPTIMIZATION ########### 2024-05-10T00:01:25,600 INFO: Platform : 2024-05-10T00:01:25,601 Architecture: unsupported 2024-05-10T00:01:25,601 Compiler : gcc 2024-05-10T00:01:25,602 CPU baseline : 2024-05-10T00:01:25,602 Requested : optimization disabled 2024-05-10T00:01:25,603 Enabled : none 2024-05-10T00:01:25,603 Flags : none 2024-05-10T00:01:25,604 Extra checks: none 2024-05-10T00:01:25,604 Requested : optimization disabled 2024-05-10T00:01:25,605 CPU dispatch : 2024-05-10T00:01:25,605 Enabled : none 2024-05-10T00:01:25,606 Generated : none 2024-05-10T00:01:25,606 INFO: CCompilerOpt.cache_flush[864] : write cache to path -> /tmp/pip-wheel-d7vm7we4/diploshic_1fe05434548445268abff5aa59682eaf/build/temp.linux-armv7l-cpython-311/ccompiler_opt_cache_ext.py 2024-05-10T00:01:25,778 Building wheel for diploshic (pyproject.toml): finished with status 'done' 2024-05-10T00:01:25,784 Created wheel for diploshic: filename=diploSHIC-1.0.6-cp311-cp311-linux_armv7l.whl size=115541 sha256=db8141180bbdb1030204b2821f8817852810838b9fc20e2c93448a6beea4e649 2024-05-10T00:01:25,785 Stored in directory: /tmp/pip-ephem-wheel-cache-igk_udsy/wheels/bd/68/36/3e7fd55e95a790b2d7fbacc47eb10cdc8e0bc0ed9b81efeb90 2024-05-10T00:01:25,797 Successfully built diploshic 2024-05-10T00:01:25,807 Removed build tracker: '/tmp/pip-build-tracker-y0jlgdk9'