2024-05-10T00:01:41,639 Created temporary directory: /tmp/pip-build-tracker-a4av9nzy 2024-05-10T00:01:41,640 Initialized build tracking at /tmp/pip-build-tracker-a4av9nzy 2024-05-10T00:01:41,641 Created build tracker: /tmp/pip-build-tracker-a4av9nzy 2024-05-10T00:01:41,642 Entered build tracker: /tmp/pip-build-tracker-a4av9nzy 2024-05-10T00:01:41,643 Created temporary directory: /tmp/pip-wheel-gl1cq9fh 2024-05-10T00:01:41,646 Created temporary directory: /tmp/pip-ephem-wheel-cache-mqq0y3jg 2024-05-10T00:01:41,674 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-10T00:01:41,679 2 location(s) to search for versions of protein-design-tools: 2024-05-10T00:01:41,679 * https://pypi.org/simple/protein-design-tools/ 2024-05-10T00:01:41,679 * https://www.piwheels.org/simple/protein-design-tools/ 2024-05-10T00:01:41,680 Fetching project page and analyzing links: https://pypi.org/simple/protein-design-tools/ 2024-05-10T00:01:41,681 Getting page https://pypi.org/simple/protein-design-tools/ 2024-05-10T00:01:41,684 Found index url https://pypi.org/simple/ 2024-05-10T00:01:41,852 Fetched page https://pypi.org/simple/protein-design-tools/ as application/vnd.pypi.simple.v1+json 2024-05-10T00:01:41,856 Found link https://files.pythonhosted.org/packages/ed/a6/a527cb82986e54d8bf9c1f1de71036e3474c6fde773c40dbdcd2e857793e/protein-design-tools-0.1.0.tar.gz (from https://pypi.org/simple/protein-design-tools/), version: 0.1.0 2024-05-10T00:01:41,857 Found link https://files.pythonhosted.org/packages/99/f2/9710ed6b56c764ed7ecb1035655952234d65fef841aa220f727e7dc58c58/protein_design_tools-0.1.1.tar.gz (from https://pypi.org/simple/protein-design-tools/), version: 0.1.1 2024-05-10T00:01:41,858 Found link https://files.pythonhosted.org/packages/b2/8e/8559cd3b6f8454390d45afb9015819cdb01aa51ed9b53b64b044b9342bb2/protein_design_tools-0.1.3.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.3 2024-05-10T00:01:41,859 Found link https://files.pythonhosted.org/packages/05/90/17c62aa7320a475051eea3f857d854065f49e1c6e241816662de784d4495/protein_design_tools-0.1.4.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.4 2024-05-10T00:01:41,860 Found link https://files.pythonhosted.org/packages/2b/4f/e576ff4b0c17f92a752670ae249b18c4b22681d162b3ea54eb7c8187e934/protein-design-tools-0.1.5.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.5 2024-05-10T00:01:41,861 Found link https://files.pythonhosted.org/packages/2e/43/6bbc489853ecce726a00644099615c17b574b2fe318c53409f7071eb1829/protein_design_tools-0.1.6.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.6 2024-05-10T00:01:41,862 Found link https://files.pythonhosted.org/packages/6c/af/d4f52f5271c5185dcb0683fdea82ccd34534111b732c96913ee6cee20ba2/protein_design_tools-0.1.7.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.7 2024-05-10T00:01:41,862 Found link https://files.pythonhosted.org/packages/14/24/a1d06b818f3d46d7318b86f0334181bb8b9134f71856b2a0ca69ea24d040/protein_design_tools-0.1.8.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.8 2024-05-10T00:01:41,863 Found link https://files.pythonhosted.org/packages/9c/73/da486d6ea5db2b79ee4188d258d6b13734e412cf0c16cc9d40d09900699d/protein_design_tools-0.1.9.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.9 2024-05-10T00:01:41,864 Found link https://files.pythonhosted.org/packages/9e/09/ece7ef27626839515873c975edec7409b1501fe0d06f0e798ec6fefd3168/protein_design_tools-0.1.10.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.10 2024-05-10T00:01:41,865 Found link https://files.pythonhosted.org/packages/be/d1/7552b3dafe349a6c0b89507eaf0b75338f5fa977b281f546bb30649942b7/protein_design_tools-0.1.11.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.11 2024-05-10T00:01:41,866 Found link https://files.pythonhosted.org/packages/a9/18/5ea417d67a863fc629b4b3a5689993ecf100b2a3241d94bff1e30b83f3f5/protein_design_tools-0.1.12.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.12 2024-05-10T00:01:41,867 Found link https://files.pythonhosted.org/packages/66/a4/9a64125c3f518d628b870adc8c9fb9ab0e26e23a3eabc51a0c06594b915e/protein_design_tools-0.1.13.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.13 2024-05-10T00:01:41,868 Found link https://files.pythonhosted.org/packages/70/87/e061d696b801f8b4d00fe4611c89fecf786ec93a5ecb0ba89b7a90f906e7/protein_design_tools-0.1.14.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.14 2024-05-10T00:01:41,869 Found link https://files.pythonhosted.org/packages/d0/02/6860c3a27feea487138bc8fc1814e86f48d4ecd4ff13575d0664e0636516/protein_design_tools-0.1.15.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.15 2024-05-10T00:01:41,870 Found link https://files.pythonhosted.org/packages/aa/f8/5530cc31171d24490da206b3f7f8050246c7566871002b256f047fc5756b/protein_design_tools-0.1.16.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.16 2024-05-10T00:01:41,870 Found link https://files.pythonhosted.org/packages/f0/d2/f64c07141a7b5573eb0035be55de68ad06fff208c0aa95c0641ae5ef064e/protein_design_tools-0.1.17.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.17 2024-05-10T00:01:41,871 Found link https://files.pythonhosted.org/packages/ba/36/d107bb411a9106a299484fd078f0ade64e1388720cdc97a815f8895f3a15/protein_design_tools-0.1.18.tar.gz (from https://pypi.org/simple/protein-design-tools/) (requires-python:>=3.6), version: 0.1.18 2024-05-10T00:01:41,872 Fetching project page and analyzing links: https://www.piwheels.org/simple/protein-design-tools/ 2024-05-10T00:01:41,873 Getting page https://www.piwheels.org/simple/protein-design-tools/ 2024-05-10T00:01:41,874 Found index url https://www.piwheels.org/simple/ 2024-05-10T00:01:42,725 Fetched page https://www.piwheels.org/simple/protein-design-tools/ as text/html 2024-05-10T00:01:42,736 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.14-py3-none-any.whl#sha256=e6e49ebfe5e8973506daa1894aa6e66a5e820a2382df6cf8aa6f47ca95afc838 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-10T00:01:42,738 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.13-py3-none-any.whl#sha256=30eb22fc29481255ef00f15076280a7bb8c481e154a09ee7fcc6784d2926404a (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-10T00:01:42,739 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.12-py3-none-any.whl#sha256=31708ffda844e5438199508fb1c157e275d8abf0ce62d7a067b0dbcf336ff34c (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-10T00:01:42,740 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.11-py3-none-any.whl#sha256=3c7c4f05ad2996e49f7f0832d581ec72b0517cd4e0f986e845108c0a6e58acb8 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-10T00:01:42,741 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.10-py3-none-any.whl#sha256=d7e2a99fe064326d2b4c1fcc6ee98dc054b35d1ceccb8fe8665a0310c2d5dde3 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-10T00:01:42,741 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.9-py3-none-any.whl#sha256=5acbaf40f239e41b61fb581d11ea8a230ca5197b170159850bc93cd3403976f6 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-10T00:01:42,743 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.8-py3-none-any.whl#sha256=f1747869a6004c8e1f0fb378cf55ab0df7c666a0a419414de8b98d92cacb2132 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-10T00:01:42,744 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.7-py3-none-any.whl#sha256=0e32edd830836de2ef77b03f2375ddd185dabc9fec3b9b9983f05b4f4d545a26 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-10T00:01:42,745 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.6-py3-none-any.whl#sha256=b7597266a06dd8c3544dd12e69d278db111719d068166100b2fde95e5438a85d (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-10T00:01:42,746 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.5-py3-none-any.whl#sha256=d39131f1daa2a71dfaf41651cbf0905f806d074b025dc60e908fd1562896da5e (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-10T00:01:42,746 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.4-py3-none-any.whl#sha256=8fb6924808b71bdc89472e84af147a439817e0a3a42d6c8ebbb24ab24d5aed48 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-10T00:01:42,747 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.3-py3-none-any.whl#sha256=3ca03677ec61152b0d2633cdaf790e7d1f0ad26fe98b3e941801c0fb4f764543 (from https://www.piwheels.org/simple/protein-design-tools/) (requires-python:>=3.6) 2024-05-10T00:01:42,748 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.1-py3-none-any.whl#sha256=6906d32c055f62c2001f7821cd213d2dea1d429b436a820f794718def3ffc302 (from https://www.piwheels.org/simple/protein-design-tools/) 2024-05-10T00:01:42,749 Skipping link: No binaries permitted for protein-design-tools: https://www.piwheels.org/simple/protein-design-tools/protein_design_tools-0.1.0-py3-none-any.whl#sha256=b026a4bfbdb9619aa35b321f689be75094c1772ae9843728423ab7b58df7c6da (from https://www.piwheels.org/simple/protein-design-tools/) 2024-05-10T00:01:42,749 Skipping link: not a file: https://www.piwheels.org/simple/protein-design-tools/ 2024-05-10T00:01:42,750 Skipping link: not a file: https://pypi.org/simple/protein-design-tools/ 2024-05-10T00:01:42,787 Given no hashes to check 1 links for project 'protein-design-tools': discarding no candidates 2024-05-10T00:01:42,819 Collecting protein-design-tools==0.1.17 2024-05-10T00:01:42,823 Created temporary directory: /tmp/pip-unpack-b6nuzwtu 2024-05-10T00:01:43,045 Downloading protein_design_tools-0.1.17.tar.gz (6.9 kB) 2024-05-10T00:01:43,083 Added protein-design-tools==0.1.17 from https://files.pythonhosted.org/packages/f0/d2/f64c07141a7b5573eb0035be55de68ad06fff208c0aa95c0641ae5ef064e/protein_design_tools-0.1.17.tar.gz to build tracker '/tmp/pip-build-tracker-a4av9nzy' 2024-05-10T00:01:43,084 Running setup.py (path:/tmp/pip-wheel-gl1cq9fh/protein-design-tools_eac3cb1ef94645c1a63534b035cd5710/setup.py) egg_info for package protein-design-tools 2024-05-10T00:01:43,086 Created temporary directory: /tmp/pip-pip-egg-info-qq5apxn_ 2024-05-10T00:01:43,086 Preparing metadata (setup.py): started 2024-05-10T00:01:43,087 Running command python setup.py egg_info 2024-05-10T00:01:44,163 running egg_info 2024-05-10T00:01:44,164 creating /tmp/pip-pip-egg-info-qq5apxn_/protein_design_tools.egg-info 2024-05-10T00:01:44,192 writing /tmp/pip-pip-egg-info-qq5apxn_/protein_design_tools.egg-info/PKG-INFO 2024-05-10T00:01:44,196 writing dependency_links to /tmp/pip-pip-egg-info-qq5apxn_/protein_design_tools.egg-info/dependency_links.txt 2024-05-10T00:01:44,199 writing requirements to /tmp/pip-pip-egg-info-qq5apxn_/protein_design_tools.egg-info/requires.txt 2024-05-10T00:01:44,200 writing top-level names to /tmp/pip-pip-egg-info-qq5apxn_/protein_design_tools.egg-info/top_level.txt 2024-05-10T00:01:44,201 writing manifest file '/tmp/pip-pip-egg-info-qq5apxn_/protein_design_tools.egg-info/SOURCES.txt' 2024-05-10T00:01:44,288 reading manifest file '/tmp/pip-pip-egg-info-qq5apxn_/protein_design_tools.egg-info/SOURCES.txt' 2024-05-10T00:01:44,290 adding license file 'LICENSE' 2024-05-10T00:01:44,292 writing manifest file '/tmp/pip-pip-egg-info-qq5apxn_/protein_design_tools.egg-info/SOURCES.txt' 2024-05-10T00:01:44,411 Preparing metadata (setup.py): finished with status 'done' 2024-05-10T00:01:44,415 Source in /tmp/pip-wheel-gl1cq9fh/protein-design-tools_eac3cb1ef94645c1a63534b035cd5710 has version 0.1.17, which satisfies requirement protein-design-tools==0.1.17 from https://files.pythonhosted.org/packages/f0/d2/f64c07141a7b5573eb0035be55de68ad06fff208c0aa95c0641ae5ef064e/protein_design_tools-0.1.17.tar.gz 2024-05-10T00:01:44,416 Removed protein-design-tools==0.1.17 from https://files.pythonhosted.org/packages/f0/d2/f64c07141a7b5573eb0035be55de68ad06fff208c0aa95c0641ae5ef064e/protein_design_tools-0.1.17.tar.gz from build tracker '/tmp/pip-build-tracker-a4av9nzy' 2024-05-10T00:01:44,422 Created temporary directory: /tmp/pip-unpack-t5tdmy1s 2024-05-10T00:01:44,423 Created temporary directory: /tmp/pip-unpack-equt62cv 2024-05-10T00:01:44,427 Building wheels for collected packages: protein-design-tools 2024-05-10T00:01:44,432 Created temporary directory: /tmp/pip-wheel-4knel3pc 2024-05-10T00:01:44,433 Building wheel for protein-design-tools (setup.py): started 2024-05-10T00:01:44,434 Destination directory: /tmp/pip-wheel-4knel3pc 2024-05-10T00:01:44,434 Running command python setup.py bdist_wheel 2024-05-10T00:01:45,548 running bdist_wheel 2024-05-10T00:01:45,644 running build 2024-05-10T00:01:45,645 running build_py 2024-05-10T00:01:45,672 creating build 2024-05-10T00:01:45,673 creating build/lib 2024-05-10T00:01:45,674 creating build/lib/protein_design_tools 2024-05-10T00:01:45,675 copying protein_design_tools/protein_structure.py -> build/lib/protein_design_tools 2024-05-10T00:01:45,677 copying protein_design_tools/protein_structure_utils.py -> build/lib/protein_design_tools 2024-05-10T00:01:45,679 copying protein_design_tools/__init__.py -> build/lib/protein_design_tools 2024-05-10T00:01:45,681 copying protein_design_tools/test.py -> build/lib/protein_design_tools 2024-05-10T00:01:45,709 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-10T00:01:45,709 !! 2024-05-10T00:01:45,710 ******************************************************************************** 2024-05-10T00:01:45,711 Please avoid running ``setup.py`` directly. 2024-05-10T00:01:45,711 Instead, use pypa/build, pypa/installer or other 2024-05-10T00:01:45,712 standards-based tools. 2024-05-10T00:01:45,713 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-10T00:01:45,714 ******************************************************************************** 2024-05-10T00:01:45,715 !! 2024-05-10T00:01:45,715 self.initialize_options() 2024-05-10T00:01:45,734 installing to build/bdist.linux-armv7l/wheel 2024-05-10T00:01:45,735 running install 2024-05-10T00:01:45,760 running install_lib 2024-05-10T00:01:45,785 creating build/bdist.linux-armv7l 2024-05-10T00:01:45,785 creating build/bdist.linux-armv7l/wheel 2024-05-10T00:01:45,787 creating build/bdist.linux-armv7l/wheel/protein_design_tools 2024-05-10T00:01:45,788 copying build/lib/protein_design_tools/protein_structure.py -> build/bdist.linux-armv7l/wheel/protein_design_tools 2024-05-10T00:01:45,790 copying build/lib/protein_design_tools/protein_structure_utils.py -> build/bdist.linux-armv7l/wheel/protein_design_tools 2024-05-10T00:01:45,793 copying build/lib/protein_design_tools/__init__.py -> build/bdist.linux-armv7l/wheel/protein_design_tools 2024-05-10T00:01:45,795 copying build/lib/protein_design_tools/test.py -> build/bdist.linux-armv7l/wheel/protein_design_tools 2024-05-10T00:01:45,796 running install_egg_info 2024-05-10T00:01:45,859 running egg_info 2024-05-10T00:01:45,883 writing protein_design_tools.egg-info/PKG-INFO 2024-05-10T00:01:45,886 writing dependency_links to protein_design_tools.egg-info/dependency_links.txt 2024-05-10T00:01:45,887 writing requirements to protein_design_tools.egg-info/requires.txt 2024-05-10T00:01:45,888 writing top-level names to protein_design_tools.egg-info/top_level.txt 2024-05-10T00:01:45,916 reading manifest file 'protein_design_tools.egg-info/SOURCES.txt' 2024-05-10T00:01:45,918 adding license file 'LICENSE' 2024-05-10T00:01:45,919 writing manifest file 'protein_design_tools.egg-info/SOURCES.txt' 2024-05-10T00:01:45,921 Copying protein_design_tools.egg-info to build/bdist.linux-armv7l/wheel/protein_design_tools-0.1.17-py3.11.egg-info 2024-05-10T00:01:45,931 running install_scripts 2024-05-10T00:01:45,944 creating build/bdist.linux-armv7l/wheel/protein_design_tools-0.1.17.dist-info/WHEEL 2024-05-10T00:01:45,946 creating '/tmp/pip-wheel-4knel3pc/protein_design_tools-0.1.17-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-10T00:01:45,949 adding 'protein_design_tools/__init__.py' 2024-05-10T00:01:45,950 adding 'protein_design_tools/protein_structure.py' 2024-05-10T00:01:45,952 adding 'protein_design_tools/protein_structure_utils.py' 2024-05-10T00:01:45,954 adding 'protein_design_tools/test.py' 2024-05-10T00:01:45,956 adding 'protein_design_tools-0.1.17.dist-info/LICENSE' 2024-05-10T00:01:45,957 adding 'protein_design_tools-0.1.17.dist-info/METADATA' 2024-05-10T00:01:45,958 adding 'protein_design_tools-0.1.17.dist-info/WHEEL' 2024-05-10T00:01:45,959 adding 'protein_design_tools-0.1.17.dist-info/top_level.txt' 2024-05-10T00:01:45,960 adding 'protein_design_tools-0.1.17.dist-info/RECORD' 2024-05-10T00:01:45,961 removing build/bdist.linux-armv7l/wheel 2024-05-10T00:01:46,085 Building wheel for protein-design-tools (setup.py): finished with status 'done' 2024-05-10T00:01:46,088 Created wheel for protein-design-tools: filename=protein_design_tools-0.1.17-py3-none-any.whl size=7319 sha256=ee615a255829b06d67edc18acd154595cf9adf218404b2532dea6fae2742060c 2024-05-10T00:01:46,089 Stored in directory: /tmp/pip-ephem-wheel-cache-mqq0y3jg/wheels/5a/41/57/f30f047cc12f8c6ca9b833500d2405c9b64ae79bd96540bff1 2024-05-10T00:01:46,098 Successfully built protein-design-tools 2024-05-10T00:01:46,101 Removed build tracker: '/tmp/pip-build-tracker-a4av9nzy'