2024-05-10T09:47:35,647 Created temporary directory: /tmp/pip-build-tracker-8xleusqv
2024-05-10T09:47:35,648 Initialized build tracking at /tmp/pip-build-tracker-8xleusqv
2024-05-10T09:47:35,648 Created build tracker: /tmp/pip-build-tracker-8xleusqv
2024-05-10T09:47:35,649 Entered build tracker: /tmp/pip-build-tracker-8xleusqv
2024-05-10T09:47:35,650 Created temporary directory: /tmp/pip-wheel-xw2xm8iq
2024-05-10T09:47:35,653 Created temporary directory: /tmp/pip-ephem-wheel-cache-05c8ym1x
2024-05-10T09:47:35,675 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-10T09:47:35,678 2 location(s) to search for versions of moleculekit:
2024-05-10T09:47:35,678 * https://pypi.org/simple/moleculekit/
2024-05-10T09:47:35,678 * https://www.piwheels.org/simple/moleculekit/
2024-05-10T09:47:35,679 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-05-10T09:47:35,680 Getting page https://pypi.org/simple/moleculekit/
2024-05-10T09:47:35,681 Found index url https://pypi.org/simple/
2024-05-10T09:47:35,916 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-05-10T09:47:35,958   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,958   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-05-10T09:47:35,959   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,960   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-05-10T09:47:35,960   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,961   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-05-10T09:47:35,962   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,963   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-05-10T09:47:35,963   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,964   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-05-10T09:47:35,965   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,965   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-05-10T09:47:35,966   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,967   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-05-10T09:47:35,968   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,969   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-05-10T09:47:35,969   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,970   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-05-10T09:47:35,970   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,971   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-05-10T09:47:35,971   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,972   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-05-10T09:47:35,973   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,973   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-05-10T09:47:35,974   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,974   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-05-10T09:47:35,975   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,976   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-05-10T09:47:35,976   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,977   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-05-10T09:47:35,978   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,978   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-05-10T09:47:35,979   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,979   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-05-10T09:47:35,980   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,980   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-05-10T09:47:35,981   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,982   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-05-10T09:47:35,982   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,983   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-05-10T09:47:35,984   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,984   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-05-10T09:47:35,985   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,986   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-05-10T09:47:35,986   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,987   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-05-10T09:47:35,988   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,989   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-05-10T09:47:35,989   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,990   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-05-10T09:47:35,990   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,991   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-05-10T09:47:35,992   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,992   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-05-10T09:47:35,993   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,993   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-05-10T09:47:35,994   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,995   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-05-10T09:47:35,995   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,996   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-05-10T09:47:35,997   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,997   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-05-10T09:47:35,998   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:35,999   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-05-10T09:47:35,999   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T09:47:36,000   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2024-05-10T09:47:36,097   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-05-10T09:47:36,098   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-05-10T09:47:36,099   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-05-10T09:47:36,100   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-05-10T09:47:36,101   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-05-10T09:47:36,101   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-05-10T09:47:36,102   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-05-10T09:47:36,103   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-05-10T09:47:36,104   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-05-10T09:47:36,105   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-05-10T09:47:36,106   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-05-10T09:47:36,107   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-05-10T09:47:36,108   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-05-10T09:47:36,109   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-05-10T09:47:36,110   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-05-10T09:47:36,110   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-05-10T09:47:36,111   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-05-10T09:47:36,112   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-05-10T09:47:36,113   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-05-10T09:47:36,114   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-05-10T09:47:36,115   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-05-10T09:47:36,116   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-05-10T09:47:36,117   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-05-10T09:47:36,118   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-05-10T09:47:36,119   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-05-10T09:47:36,120   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-05-10T09:47:36,121   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-05-10T09:47:36,121   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-05-10T09:47:36,122   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-05-10T09:47:36,123   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-05-10T09:47:36,124   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-05-10T09:47:36,125   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-05-10T09:47:36,126   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-05-10T09:47:36,127   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-05-10T09:47:36,128   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-05-10T09:47:36,129   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-05-10T09:47:36,130   Found link https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.31
2024-05-10T09:47:36,131   Found link https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.32
2024-05-10T09:47:36,132 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-05-10T09:47:36,133 Getting page https://www.piwheels.org/simple/moleculekit/
2024-05-10T09:47:36,134 Found index url https://www.piwheels.org/simple/
2024-05-10T09:47:36,312 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-05-10T09:47:36,401   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp311-cp311-linux_armv6l.whl#sha256=218f8197ef61b4d204fdf063e6c7161b0c1cada6b9072a80ed32467b83651997 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,402   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp311-cp311-linux_armv7l.whl#sha256=218f8197ef61b4d204fdf063e6c7161b0c1cada6b9072a80ed32467b83651997 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-05-10T09:47:36,403   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp311-cp311-linux_armv6l.whl#sha256=ba84e1392124eb438846b78998fb0f26e8d9942c644dd5574f49d9eb9b0f6a87 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-05-10T09:47:36,404   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp39-cp39-linux_armv6l.whl#sha256=44fb6340ac1ed849bf5c52a43b7b0334c3869777bcdec4444fc6ac0303a7d18b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,405   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp39-cp39-linux_armv7l.whl#sha256=44fb6340ac1ed849bf5c52a43b7b0334c3869777bcdec4444fc6ac0303a7d18b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,406   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv6l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,406   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv7l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,407   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv6l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,407   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv7l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,408   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv6l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,409   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv7l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,410   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp39-cp39-linux_armv6l.whl#sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,410   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp39-cp39-linux_armv7l.whl#sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,411   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv6l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,411   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv7l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T09:47:36,412   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp39-cp39-linux_armv6l.whl#sha256=383042586b9089491f7fb534cdbcab48294ebddbd0a60b4a87bd929a5a47d553 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-05-10T09:47:36,413   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv6l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-05-10T09:47:36,516   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv6l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T09:47:36,519   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T09:47:36,521   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,522   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,522   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T09:47:36,523   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,524   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,524   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,525   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,525   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,526   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,526   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,527   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,527   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,528   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,529   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,529   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,530   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,530   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,531   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,531   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,534   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,543   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,543   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,544   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,546   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,546   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,547   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,547   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,548   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,548   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,549   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,549   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,550   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,551   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,551   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,552   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,552   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,553   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,553   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,554   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,554   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,555   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,555   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,556   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,556   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,557   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,557   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,558   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,558   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,559   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,560   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,560   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,561   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,561   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,562   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,562   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,563   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,563   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,566   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,566   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,567   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,568   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,568   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,569   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,569   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,569   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,570   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,571   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,571   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,572   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,572   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,573   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,573   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,574   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,575   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,575   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,576   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,576   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,577   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,577   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,578   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T09:47:36,601   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T09:47:36,601 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-05-10T09:47:36,602 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-05-10T09:47:36,642 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-05-10T09:47:36,661 Collecting moleculekit==1.8.32
2024-05-10T09:47:36,663   Created temporary directory: /tmp/pip-unpack-raw40ek7
2024-05-10T09:47:36,878   Downloading moleculekit-1.8.32.tar.gz (6.8 MB)
2024-05-10T09:47:39,469   Added moleculekit==1.8.32 from https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz to build tracker '/tmp/pip-build-tracker-8xleusqv'
2024-05-10T09:47:39,477   Created temporary directory: /tmp/pip-build-env-c7ag3um_
2024-05-10T09:47:39,481   Installing build dependencies: started
2024-05-10T09:47:39,483   Running command pip subprocess to install build dependencies
2024-05-10T09:47:40,631   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-05-10T09:47:41,147   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-10T09:47:42,606   Collecting setuptools
2024-05-10T09:47:42,621     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB)
2024-05-10T09:47:43,273     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-05-10T09:47:43,277     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-05-10T09:47:43,280     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-05-10T09:47:43,283     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-05-10T09:47:43,287     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-05-10T09:47:43,603   Collecting numpy>=1.18.5
2024-05-10T09:47:43,619     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp311-cp311-linux_armv7l.whl (5.6 MB)
2024-05-10T09:47:45,124   Collecting Cython>=0.29.21
2024-05-10T09:47:45,150     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp311-cp311-linux_armv7l.whl (11.8 MB)
2024-05-10T09:47:45,555   Collecting toml
2024-05-10T09:47:45,572     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-05-10T09:47:45,667   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-05-10T09:47:45,682     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-05-10T09:47:45,700        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 3.8 MB/s eta 0:00:00
2024-05-10T09:47:48,344   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2024-05-10T09:47:48,375     Creating /tmp/pip-build-env-c7ag3um_/overlay/local/bin
2024-05-10T09:47:48,377     changing mode of /tmp/pip-build-env-c7ag3um_/overlay/local/bin/versioneer to 755
2024-05-10T09:47:59,440     changing mode of /tmp/pip-build-env-c7ag3um_/overlay/local/bin/f2py to 755
2024-05-10T09:48:03,004     changing mode of /tmp/pip-build-env-c7ag3um_/overlay/local/bin/cygdb to 755
2024-05-10T09:48:03,006     changing mode of /tmp/pip-build-env-c7ag3um_/overlay/local/bin/cython to 755
2024-05-10T09:48:03,008     changing mode of /tmp/pip-build-env-c7ag3um_/overlay/local/bin/cythonize to 755
2024-05-10T09:48:03,052   Successfully installed Cython-3.0.10 numpy-1.26.4 setuptools-69.5.1 toml-0.10.2 versioneer-0.28
2024-05-10T09:48:03,742   Installing build dependencies: finished with status 'done'
2024-05-10T09:48:03,745   Getting requirements to build wheel: started
2024-05-10T09:48:03,747   Running command Getting requirements to build wheel
2024-05-10T09:48:39,374   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-05-10T09:48:47,771   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T09:48:47,772   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T09:48:47,772   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T09:48:47,773   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T09:48:47,773   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T09:48:47,774   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T09:48:47,774   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T09:48:47,775   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T09:48:47,776   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T09:48:47,776   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T09:48:47,777   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-05-10T09:48:47,777   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-05-10T09:48:47,778   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-05-10T09:48:47,778   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-05-10T09:48:47,779   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
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2024-05-10T09:48:48,059   running egg_info
2024-05-10T09:48:48,065   writing moleculekit.egg-info/PKG-INFO
2024-05-10T09:48:48,069   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-05-10T09:48:48,071   writing requirements to moleculekit.egg-info/requires.txt
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2024-05-10T09:48:48,109   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T09:48:48,111   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T09:48:48,112   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T09:48:48,114   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,115   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,115   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,116   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,117   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,117   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,118   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,118   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,118   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,119   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,119   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,120   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T09:48:48,122   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,123   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,123   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,124   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,124   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,125   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,125   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,126   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,127   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,127   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,127   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,128   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T09:48:48,129   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,129   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:48,130   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T09:48:48,145   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T09:48:48,156   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-05-10T09:48:48,188   reading manifest template 'MANIFEST.in'
2024-05-10T09:48:48,434   no previously-included directories found matching 'moleculekit/test-data'
2024-05-10T09:48:48,436   no previously-included directories found matching 'moleculekit/tests'
2024-05-10T09:48:48,437   no previously-included directories found matching 'package'
2024-05-10T09:48:48,438   adding license file 'LICENSE'
2024-05-10T09:48:48,454   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-05-10T09:48:50,107   Getting requirements to build wheel: finished with status 'done'
2024-05-10T09:48:50,120   Installing backend dependencies: started
2024-05-10T09:48:50,122   Running command pip subprocess to install backend dependencies
2024-05-10T09:48:51,336   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-05-10T09:48:51,891   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-10T09:48:52,523   Collecting wheel
2024-05-10T09:48:52,561     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-05-10T09:48:54,823   Installing collected packages: wheel
2024-05-10T09:48:55,042     Creating /tmp/pip-build-env-c7ag3um_/normal/local/bin
2024-05-10T09:48:55,044     changing mode of /tmp/pip-build-env-c7ag3um_/normal/local/bin/wheel to 755
2024-05-10T09:48:55,055   Successfully installed wheel-0.43.0
2024-05-10T09:48:55,522   Installing backend dependencies: finished with status 'done'
2024-05-10T09:48:55,524   Created temporary directory: /tmp/pip-modern-metadata-qmvur1bh
2024-05-10T09:48:55,526   Preparing metadata (pyproject.toml): started
2024-05-10T09:48:55,528   Running command Preparing metadata (pyproject.toml)
2024-05-10T09:48:57,920   running dist_info
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2024-05-10T09:48:57,986   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T09:48:57,989   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T09:48:57,996   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T09:48:57,997   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:57,997   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:57,998   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T09:48:57,999   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:48:57,999   reading manifest file '/tmp/pip-modern-metadata-qmvur1bh/moleculekit.egg-info/SOURCES.txt'
2024-05-10T09:48:58,000   reading manifest template 'MANIFEST.in'
2024-05-10T09:48:58,246   no previously-included directories found matching 'moleculekit/test-data'
2024-05-10T09:48:58,247   no previously-included directories found matching 'moleculekit/tests'
2024-05-10T09:48:58,247   no previously-included directories found matching 'package'
2024-05-10T09:48:58,248   adding license file 'LICENSE'
2024-05-10T09:48:58,259   writing manifest file '/tmp/pip-modern-metadata-qmvur1bh/moleculekit.egg-info/SOURCES.txt'
2024-05-10T09:48:58,267   creating '/tmp/pip-modern-metadata-qmvur1bh/moleculekit-1.8.32.dist-info'
2024-05-10T09:48:58,500   Preparing metadata (pyproject.toml): finished with status 'done'
2024-05-10T09:48:58,505   Source in /tmp/pip-wheel-xw2xm8iq/moleculekit_842ccf4709ff4906b6d086d10fa33732 has version 1.8.32, which satisfies requirement moleculekit==1.8.32 from https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz
2024-05-10T09:48:58,506   Removed moleculekit==1.8.32 from https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz from build tracker '/tmp/pip-build-tracker-8xleusqv'
2024-05-10T09:48:58,511 Created temporary directory: /tmp/pip-unpack-efw029z5
2024-05-10T09:48:58,512 Created temporary directory: /tmp/pip-unpack-kxpz_nhf
2024-05-10T09:48:58,520 Building wheels for collected packages: moleculekit
2024-05-10T09:48:58,524   Created temporary directory: /tmp/pip-wheel-r3df2rc6
2024-05-10T09:48:58,525   Destination directory: /tmp/pip-wheel-r3df2rc6
2024-05-10T09:48:58,527   Building wheel for moleculekit (pyproject.toml): started
2024-05-10T09:48:58,528   Running command Building wheel for moleculekit (pyproject.toml)
2024-05-10T09:49:00,781   running bdist_wheel
2024-05-10T09:49:00,796   running build
2024-05-10T09:49:00,796   running build_py
2024-05-10T09:49:00,803   creating build
2024-05-10T09:49:00,803   creating build/lib.linux-armv7l-cpython-311
2024-05-10T09:49:00,804   creating build/lib.linux-armv7l-cpython-311/moleculekit
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2024-05-10T09:49:00,836   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
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2024-05-10T09:49:00,841   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-05-10T09:49:00,846   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-05-10T09:49:00,848   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-05-10T09:49:00,850   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-05-10T09:49:00,853   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-05-10T09:49:00,854   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-05-10T09:49:00,857   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-05-10T09:49:00,858   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-05-10T09:49:00,861   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-05-10T09:49:00,863   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-05-10T09:49:00,865   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-05-10T09:49:00,866   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-05-10T09:49:00,871   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-05-10T09:49:00,874   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-05-10T09:49:00,876   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,877   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,880   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,883   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,885   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,887   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,890   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,892   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,894   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,896   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,898   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,900   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,903   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,904   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,906   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-05-10T09:49:00,909   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-05-10T09:49:00,910   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-05-10T09:49:00,912   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-05-10T09:49:00,913   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-05-10T09:49:00,915   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-05-10T09:49:00,918   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-05-10T09:49:00,920   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-05-10T09:49:00,923   copying moleculekit/smallmol/smallmolcdp.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-05-10T09:49:00,925   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-05-10T09:49:00,927   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-05-10T09:49:00,930   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-05-10T09:49:00,931   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-05-10T09:49:00,933   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-05-10T09:49:00,936   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-05-10T09:49:00,938   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-05-10T09:49:00,940   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-05-10T09:49:00,941   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-05-10T09:49:00,948   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-05-10T09:49:00,953   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,954   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,957   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,959   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,961   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,963   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,966   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,968   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,970   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,972   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,974   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,977   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,979   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,981   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,983   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,986   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-05-10T09:49:00,988   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-05-10T09:49:00,989   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-05-10T09:49:00,991   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-05-10T09:49:00,993   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-05-10T09:49:00,994   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-05-10T09:49:00,996   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-05-10T09:49:00,998   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-05-10T09:49:01,000   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-05-10T09:49:01,002   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-05-10T09:49:01,003   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-05-10T09:49:01,006   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-05-10T09:49:01,008   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-05-10T09:49:01,009   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-05-10T09:49:01,011   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-05-10T09:49:01,014   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-05-10T09:49:01,017   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-05-10T09:49:01,019   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-05-10T09:49:01,020   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-05-10T09:49:01,022   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-05-10T09:49:01,025   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-05-10T09:49:01,027   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-05-10T09:49:01,028   running egg_info
2024-05-10T09:49:01,033   writing moleculekit.egg-info/PKG-INFO
2024-05-10T09:49:01,036   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-05-10T09:49:01,037   writing requirements to moleculekit.egg-info/requires.txt
2024-05-10T09:49:01,038   writing top-level names to moleculekit.egg-info/top_level.txt
2024-05-10T09:49:01,055   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,056   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,056   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,057   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,057   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,057   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,058   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,059   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,059   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,060   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,060   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,061   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,061   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,062   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,063   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,063   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,064   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,065   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,065   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,065   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,066   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,066   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,067   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,067   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,068   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,069   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,069   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,070   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,071   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,071   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,072   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,072   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,073   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,074   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,074   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,075   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,075   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,075   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,076   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,076   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,077   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,077   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,078   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,078   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,079   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,080   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,080   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,081   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,081   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,082   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,082   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,083   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,084   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,084   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,085   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,085   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,086   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,086   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,087   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,087   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,087   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,088   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,088   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,089   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,089   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,090   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,091   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,091   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,092   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,092   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,093   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,094   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,094   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,094   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,095   dependency /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T09:49:01,095   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-05-10T09:49:01,096   reading manifest template 'MANIFEST.in'
2024-05-10T09:49:01,343   no previously-included directories found matching 'moleculekit/test-data'
2024-05-10T09:49:01,344   no previously-included directories found matching 'moleculekit/tests'
2024-05-10T09:49:01,345   no previously-included directories found matching 'package'
2024-05-10T09:49:01,345   adding license file 'LICENSE'
2024-05-10T09:49:01,360   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-05-10T09:49:01,369   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-05-10T09:49:01,370   !!

2024-05-10T09:49:01,371           ********************************************************************************
2024-05-10T09:49:01,371           ############################
2024-05-10T09:49:01,372           # Package would be ignored #
2024-05-10T09:49:01,372           ############################
2024-05-10T09:49:01,373           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-05-10T09:49:01,373           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,375           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,375           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-05-10T09:49:01,376           to the `packages` configuration field.

2024-05-10T09:49:01,377           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,378           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,378           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,379           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,380           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,382           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-05-10T09:49:01,382           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-05-10T09:49:01,382           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,383           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,383           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,384           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,385           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,387           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,387                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,387                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,388                 directory, all directories are treated like packages.
2024-05-10T09:49:01,388           ********************************************************************************

2024-05-10T09:49:01,389   !!
2024-05-10T09:49:01,389     check.warn(importable)
2024-05-10T09:49:01,390   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-05-10T09:49:01,390   !!

2024-05-10T09:49:01,391           ********************************************************************************
2024-05-10T09:49:01,391           ############################
2024-05-10T09:49:01,392           # Package would be ignored #
2024-05-10T09:49:01,392           ############################
2024-05-10T09:49:01,393           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-05-10T09:49:01,393           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,394           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,394           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-05-10T09:49:01,395           to the `packages` configuration field.

2024-05-10T09:49:01,396           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,396           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,397           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,398           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,399           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,400           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-05-10T09:49:01,400           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-05-10T09:49:01,401           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,401           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,402           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,403           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,404           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,405           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,406                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,406                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,407                 directory, all directories are treated like packages.
2024-05-10T09:49:01,407           ********************************************************************************

2024-05-10T09:49:01,408   !!
2024-05-10T09:49:01,408     check.warn(importable)
2024-05-10T09:49:01,409   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-05-10T09:49:01,409   !!

2024-05-10T09:49:01,410           ********************************************************************************
2024-05-10T09:49:01,411           ############################
2024-05-10T09:49:01,412           # Package would be ignored #
2024-05-10T09:49:01,412           ############################
2024-05-10T09:49:01,413           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-05-10T09:49:01,413           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,414           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,415           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-05-10T09:49:01,415           to the `packages` configuration field.

2024-05-10T09:49:01,416           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,416           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,416           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,417           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,418           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,418           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-05-10T09:49:01,419           already explicitly excluding 'moleculekit.cython_utils' via
2024-05-10T09:49:01,419           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,420           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,420           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,421           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,421           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,423           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,423                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,424                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,424                 directory, all directories are treated like packages.
2024-05-10T09:49:01,425           ********************************************************************************

2024-05-10T09:49:01,425   !!
2024-05-10T09:49:01,426     check.warn(importable)
2024-05-10T09:49:01,426   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-05-10T09:49:01,427   !!

2024-05-10T09:49:01,428           ********************************************************************************
2024-05-10T09:49:01,428           ############################
2024-05-10T09:49:01,429           # Package would be ignored #
2024-05-10T09:49:01,429           ############################
2024-05-10T09:49:01,430           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-05-10T09:49:01,430           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,431           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,432           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-05-10T09:49:01,432           to the `packages` configuration field.

2024-05-10T09:49:01,433           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,433           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,434           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,435           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,436           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,437           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-05-10T09:49:01,437           already explicitly excluding 'moleculekit.distance_utils' via
2024-05-10T09:49:01,438           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,439           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,439           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,440           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,440           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,441           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,442                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,442                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,442                 directory, all directories are treated like packages.
2024-05-10T09:49:01,443           ********************************************************************************

2024-05-10T09:49:01,443   !!
2024-05-10T09:49:01,444     check.warn(importable)
2024-05-10T09:49:01,444   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-05-10T09:49:01,445   !!

2024-05-10T09:49:01,445           ********************************************************************************
2024-05-10T09:49:01,446           ############################
2024-05-10T09:49:01,446           # Package would be ignored #
2024-05-10T09:49:01,446           ############################
2024-05-10T09:49:01,447           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-05-10T09:49:01,447           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,448           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,449           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-05-10T09:49:01,449           to the `packages` configuration field.

2024-05-10T09:49:01,450           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,450           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,451           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,452           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,453           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,454           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-05-10T09:49:01,454           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-05-10T09:49:01,454           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,455           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,455           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,456           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,457           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,458           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,459                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,464                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,465                 directory, all directories are treated like packages.
2024-05-10T09:49:01,465           ********************************************************************************

2024-05-10T09:49:01,466   !!
2024-05-10T09:49:01,467     check.warn(importable)
2024-05-10T09:49:01,467   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-05-10T09:49:01,468   !!

2024-05-10T09:49:01,469           ********************************************************************************
2024-05-10T09:49:01,469           ############################
2024-05-10T09:49:01,470           # Package would be ignored #
2024-05-10T09:49:01,470           ############################
2024-05-10T09:49:01,470           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-05-10T09:49:01,471           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,472           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,472           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-05-10T09:49:01,472           to the `packages` configuration field.

2024-05-10T09:49:01,473           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,474           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,474           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,475           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,476           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,477           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-05-10T09:49:01,477           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-05-10T09:49:01,477           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,478           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,478           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,479           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,480           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,481           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,481                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,482                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,483                 directory, all directories are treated like packages.
2024-05-10T09:49:01,483           ********************************************************************************

2024-05-10T09:49:01,484   !!
2024-05-10T09:49:01,485     check.warn(importable)
2024-05-10T09:49:01,485   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-05-10T09:49:01,485   !!

2024-05-10T09:49:01,486           ********************************************************************************
2024-05-10T09:49:01,487           ############################
2024-05-10T09:49:01,487           # Package would be ignored #
2024-05-10T09:49:01,488           ############################
2024-05-10T09:49:01,488           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-05-10T09:49:01,489           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,490           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,490           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-05-10T09:49:01,491           to the `packages` configuration field.

2024-05-10T09:49:01,492           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,492           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,493           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,493           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,494           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,495           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-05-10T09:49:01,495           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-05-10T09:49:01,495           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,496           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,496           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,497           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,498           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,499           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,499                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,499                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,500                 directory, all directories are treated like packages.
2024-05-10T09:49:01,500           ********************************************************************************

2024-05-10T09:49:01,501   !!
2024-05-10T09:49:01,501     check.warn(importable)
2024-05-10T09:49:01,501   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-05-10T09:49:01,502   !!

2024-05-10T09:49:01,503           ********************************************************************************
2024-05-10T09:49:01,503           ############################
2024-05-10T09:49:01,504           # Package would be ignored #
2024-05-10T09:49:01,504           ############################
2024-05-10T09:49:01,504           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-05-10T09:49:01,505           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,506           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,506           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-05-10T09:49:01,507           to the `packages` configuration field.

2024-05-10T09:49:01,507           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,508           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,508           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,509           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,510           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,511           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-05-10T09:49:01,511           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-05-10T09:49:01,512           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,512           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,513           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,514           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,515           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,517           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,517                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,518                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,519                 directory, all directories are treated like packages.
2024-05-10T09:49:01,519           ********************************************************************************

2024-05-10T09:49:01,519   !!
2024-05-10T09:49:01,520     check.warn(importable)
2024-05-10T09:49:01,520   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-05-10T09:49:01,521   !!

2024-05-10T09:49:01,521           ********************************************************************************
2024-05-10T09:49:01,522           ############################
2024-05-10T09:49:01,522           # Package would be ignored #
2024-05-10T09:49:01,522           ############################
2024-05-10T09:49:01,523           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-05-10T09:49:01,523           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,524           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,524           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-05-10T09:49:01,525           to the `packages` configuration field.

2024-05-10T09:49:01,525           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,526           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,526           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,527           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,528           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,529           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-05-10T09:49:01,530           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-05-10T09:49:01,530           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,531           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,531           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,532           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,533           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,535           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,535                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,536                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,536                 directory, all directories are treated like packages.
2024-05-10T09:49:01,537           ********************************************************************************

2024-05-10T09:49:01,538   !!
2024-05-10T09:49:01,538     check.warn(importable)
2024-05-10T09:49:01,539   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-05-10T09:49:01,539   !!

2024-05-10T09:49:01,540           ********************************************************************************
2024-05-10T09:49:01,540           ############################
2024-05-10T09:49:01,541           # Package would be ignored #
2024-05-10T09:49:01,541           ############################
2024-05-10T09:49:01,542           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-05-10T09:49:01,542           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,544           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,544           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-05-10T09:49:01,544           to the `packages` configuration field.

2024-05-10T09:49:01,545           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,546           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,546           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,547           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,548           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,549           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-05-10T09:49:01,549           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-05-10T09:49:01,550           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,550           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,551           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,551           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,552           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,554           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,554                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,555                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,555                 directory, all directories are treated like packages.
2024-05-10T09:49:01,555           ********************************************************************************

2024-05-10T09:49:01,556   !!
2024-05-10T09:49:01,557     check.warn(importable)
2024-05-10T09:49:01,557   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-05-10T09:49:01,558   !!

2024-05-10T09:49:01,559           ********************************************************************************
2024-05-10T09:49:01,559           ############################
2024-05-10T09:49:01,560           # Package would be ignored #
2024-05-10T09:49:01,560           ############################
2024-05-10T09:49:01,561           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-05-10T09:49:01,561           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,562           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,563           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-05-10T09:49:01,563           to the `packages` configuration field.

2024-05-10T09:49:01,564           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,565           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,565           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,571           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,579           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,582           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-05-10T09:49:01,582           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-05-10T09:49:01,583           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,584           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,585           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,586           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,587           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,589           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,589                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,590                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,590                 directory, all directories are treated like packages.
2024-05-10T09:49:01,590           ********************************************************************************

2024-05-10T09:49:01,591   !!
2024-05-10T09:49:01,592     check.warn(importable)
2024-05-10T09:49:01,592   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-05-10T09:49:01,595   !!

2024-05-10T09:49:01,597           ********************************************************************************
2024-05-10T09:49:01,598           ############################
2024-05-10T09:49:01,601           # Package would be ignored #
2024-05-10T09:49:01,604           ############################
2024-05-10T09:49:01,605           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-05-10T09:49:01,606           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,608           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,609           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-05-10T09:49:01,609           to the `packages` configuration field.

2024-05-10T09:49:01,610           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,611           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,611           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,615           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,616           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,620           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-05-10T09:49:01,621           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-05-10T09:49:01,623           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,626           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,629           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,630           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,631           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,632           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,633                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,634                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,634                 directory, all directories are treated like packages.
2024-05-10T09:49:01,635           ********************************************************************************

2024-05-10T09:49:01,636   !!
2024-05-10T09:49:01,636     check.warn(importable)
2024-05-10T09:49:01,643   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-05-10T09:49:01,644   !!

2024-05-10T09:49:01,647           ********************************************************************************
2024-05-10T09:49:01,652           ############################
2024-05-10T09:49:01,656           # Package would be ignored #
2024-05-10T09:49:01,658           ############################
2024-05-10T09:49:01,659           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-05-10T09:49:01,660           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,660           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,661           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-05-10T09:49:01,661           to the `packages` configuration field.

2024-05-10T09:49:01,662           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,662           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,663           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,664           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,665           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,666           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-05-10T09:49:01,666           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-05-10T09:49:01,667           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,668           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,668           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,669           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,670           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,671           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,672                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,672                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,673                 directory, all directories are treated like packages.
2024-05-10T09:49:01,673           ********************************************************************************

2024-05-10T09:49:01,675   !!
2024-05-10T09:49:01,675     check.warn(importable)
2024-05-10T09:49:01,676   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-05-10T09:49:01,676   !!

2024-05-10T09:49:01,677           ********************************************************************************
2024-05-10T09:49:01,678           ############################
2024-05-10T09:49:01,678           # Package would be ignored #
2024-05-10T09:49:01,681           ############################
2024-05-10T09:49:01,682           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-05-10T09:49:01,685           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,691           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,692           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-05-10T09:49:01,693           to the `packages` configuration field.

2024-05-10T09:49:01,694           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,694           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,695           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,696           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,697           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,698           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-05-10T09:49:01,698           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-05-10T09:49:01,698           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,699           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,699           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,700           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,701           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,703           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,703                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,704                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,704                 directory, all directories are treated like packages.
2024-05-10T09:49:01,705           ********************************************************************************

2024-05-10T09:49:01,706   !!
2024-05-10T09:49:01,706     check.warn(importable)
2024-05-10T09:49:01,707   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-05-10T09:49:01,707   !!

2024-05-10T09:49:01,708           ********************************************************************************
2024-05-10T09:49:01,709           ############################
2024-05-10T09:49:01,709           # Package would be ignored #
2024-05-10T09:49:01,710           ############################
2024-05-10T09:49:01,710           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-05-10T09:49:01,711           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,712           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,713           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-05-10T09:49:01,713           to the `packages` configuration field.

2024-05-10T09:49:01,714           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,715           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,715           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,716           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,717           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,719           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-05-10T09:49:01,719           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-05-10T09:49:01,720           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,720           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,721           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,722           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,723           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,725           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,725                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,726                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,726                 directory, all directories are treated like packages.
2024-05-10T09:49:01,727           ********************************************************************************

2024-05-10T09:49:01,728   !!
2024-05-10T09:49:01,728     check.warn(importable)
2024-05-10T09:49:01,728   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-05-10T09:49:01,729   !!

2024-05-10T09:49:01,730           ********************************************************************************
2024-05-10T09:49:01,731           ############################
2024-05-10T09:49:01,731           # Package would be ignored #
2024-05-10T09:49:01,731           ############################
2024-05-10T09:49:01,732           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-05-10T09:49:01,732           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,733           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,734           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-05-10T09:49:01,734           to the `packages` configuration field.

2024-05-10T09:49:01,735           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,736           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,736           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,737           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,738           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,739           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-05-10T09:49:01,740           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-05-10T09:49:01,740           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,741           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,741           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,742           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,744           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,745           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,746                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,746                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,747                 directory, all directories are treated like packages.
2024-05-10T09:49:01,747           ********************************************************************************

2024-05-10T09:49:01,748   !!
2024-05-10T09:49:01,749     check.warn(importable)
2024-05-10T09:49:01,749   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-05-10T09:49:01,750   !!

2024-05-10T09:49:01,751           ********************************************************************************
2024-05-10T09:49:01,751           ############################
2024-05-10T09:49:01,752           # Package would be ignored #
2024-05-10T09:49:01,753           ############################
2024-05-10T09:49:01,753           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-05-10T09:49:01,754           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,755           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,755           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-05-10T09:49:01,756           to the `packages` configuration field.

2024-05-10T09:49:01,757           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,757           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,758           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,758           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,759           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,760           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-05-10T09:49:01,767           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-05-10T09:49:01,769           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,788           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,794           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,807           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,837           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,896           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,896                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,897                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,897                 directory, all directories are treated like packages.
2024-05-10T09:49:01,898           ********************************************************************************

2024-05-10T09:49:01,899   !!
2024-05-10T09:49:01,899     check.warn(importable)
2024-05-10T09:49:01,900   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-05-10T09:49:01,900   !!

2024-05-10T09:49:01,901           ********************************************************************************
2024-05-10T09:49:01,901           ############################
2024-05-10T09:49:01,902           # Package would be ignored #
2024-05-10T09:49:01,902           ############################
2024-05-10T09:49:01,903           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-05-10T09:49:01,904           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,905           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,906           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-05-10T09:49:01,906           to the `packages` configuration field.

2024-05-10T09:49:01,908           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,908           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,909           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,910           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,911           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,912           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-05-10T09:49:01,913           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-05-10T09:49:01,913           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,914           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,915           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,916           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,917           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,919           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,919                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,920                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,921                 directory, all directories are treated like packages.
2024-05-10T09:49:01,921           ********************************************************************************

2024-05-10T09:49:01,922   !!
2024-05-10T09:49:01,923     check.warn(importable)
2024-05-10T09:49:01,924   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-05-10T09:49:01,924   !!

2024-05-10T09:49:01,925           ********************************************************************************
2024-05-10T09:49:01,926           ############################
2024-05-10T09:49:01,927           # Package would be ignored #
2024-05-10T09:49:01,927           ############################
2024-05-10T09:49:01,928           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-05-10T09:49:01,929           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,930           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,931           package, please make sure that 'moleculekit.share' is explicitly added
2024-05-10T09:49:01,931           to the `packages` configuration field.

2024-05-10T09:49:01,932           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,933           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,935           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,936           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,937           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,938           If you don't want 'moleculekit.share' to be distributed and are
2024-05-10T09:49:01,939           already explicitly excluding 'moleculekit.share' via
2024-05-10T09:49:01,939           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,940           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,941           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,942           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,943           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,946           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,946                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,947                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,947                 directory, all directories are treated like packages.
2024-05-10T09:49:01,948           ********************************************************************************

2024-05-10T09:49:01,949   !!
2024-05-10T09:49:01,950     check.warn(importable)
2024-05-10T09:49:01,950   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-05-10T09:49:01,951   !!

2024-05-10T09:49:01,953           ********************************************************************************
2024-05-10T09:49:01,953           ############################
2024-05-10T09:49:01,954           # Package would be ignored #
2024-05-10T09:49:01,954           ############################
2024-05-10T09:49:01,955           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-05-10T09:49:01,955           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,956           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,957           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-05-10T09:49:01,957           to the `packages` configuration field.

2024-05-10T09:49:01,958           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,958           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,959           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,960           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,961           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,962           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-05-10T09:49:01,962           already explicitly excluding 'moleculekit.share.atomselect' via
2024-05-10T09:49:01,963           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,964           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,965           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,966           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,967           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,969           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,969                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,969                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,970                 directory, all directories are treated like packages.
2024-05-10T09:49:01,970           ********************************************************************************

2024-05-10T09:49:01,971   !!
2024-05-10T09:49:01,972     check.warn(importable)
2024-05-10T09:49:01,972   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-05-10T09:49:01,973   !!

2024-05-10T09:49:01,974           ********************************************************************************
2024-05-10T09:49:01,974           ############################
2024-05-10T09:49:01,975           # Package would be ignored #
2024-05-10T09:49:01,976           ############################
2024-05-10T09:49:01,976           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-05-10T09:49:01,977           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,978           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,979           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-05-10T09:49:01,979           to the `packages` configuration field.

2024-05-10T09:49:01,980           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:01,981           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:01,981           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:01,983           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:01,983           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:01,984           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-05-10T09:49:01,985           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-05-10T09:49:01,985           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:01,985           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:01,986           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:01,987           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:01,987           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:01,989           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:01,989                 even if it does not contain any `.py` files.
2024-05-10T09:49:01,990                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:01,990                 directory, all directories are treated like packages.
2024-05-10T09:49:01,990           ********************************************************************************

2024-05-10T09:49:01,991   !!
2024-05-10T09:49:01,992     check.warn(importable)
2024-05-10T09:49:01,992   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-05-10T09:49:01,993   !!

2024-05-10T09:49:01,994           ********************************************************************************
2024-05-10T09:49:01,994           ############################
2024-05-10T09:49:01,995           # Package would be ignored #
2024-05-10T09:49:01,995           ############################
2024-05-10T09:49:01,996           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-05-10T09:49:01,996           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:01,997           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:01,998           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-05-10T09:49:01,998           to the `packages` configuration field.

2024-05-10T09:49:01,999           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:02,000           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:02,000           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:02,001           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:02,002           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:02,003           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-05-10T09:49:02,004           already explicitly excluding 'moleculekit.tmalign' via
2024-05-10T09:49:02,005           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:02,005           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:02,006           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:02,006           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:02,008           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:02,009           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:02,010                 even if it does not contain any `.py` files.
2024-05-10T09:49:02,010                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:02,011                 directory, all directories are treated like packages.
2024-05-10T09:49:02,012           ********************************************************************************

2024-05-10T09:49:02,012   !!
2024-05-10T09:49:02,013     check.warn(importable)
2024-05-10T09:49:02,013   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-05-10T09:49:02,014   !!

2024-05-10T09:49:02,015           ********************************************************************************
2024-05-10T09:49:02,015           ############################
2024-05-10T09:49:02,015           # Package would be ignored #
2024-05-10T09:49:02,016           ############################
2024-05-10T09:49:02,016           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-05-10T09:49:02,017           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:02,018           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:02,018           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-05-10T09:49:02,019           to the `packages` configuration field.

2024-05-10T09:49:02,019           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:02,020           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:02,020           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:02,021           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:02,022           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:02,023           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-05-10T09:49:02,024           already explicitly excluding 'moleculekit.tmalign.include' via
2024-05-10T09:49:02,024           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:02,025           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:02,025           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:02,026           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:02,027           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:02,029           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:02,029                 even if it does not contain any `.py` files.
2024-05-10T09:49:02,030                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:02,031                 directory, all directories are treated like packages.
2024-05-10T09:49:02,031           ********************************************************************************

2024-05-10T09:49:02,032   !!
2024-05-10T09:49:02,033     check.warn(importable)
2024-05-10T09:49:02,033   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-05-10T09:49:02,034   !!

2024-05-10T09:49:02,035           ********************************************************************************
2024-05-10T09:49:02,035           ############################
2024-05-10T09:49:02,036           # Package would be ignored #
2024-05-10T09:49:02,036           ############################
2024-05-10T09:49:02,037           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-05-10T09:49:02,037           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:02,038           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:02,039           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-05-10T09:49:02,040           to the `packages` configuration field.

2024-05-10T09:49:02,040           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:02,041           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:02,041           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:02,042           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:02,043           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:02,044           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-05-10T09:49:02,044           already explicitly excluding 'moleculekit.tmalign.src' via
2024-05-10T09:49:02,045           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:02,045           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:02,045           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:02,046           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:02,047           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:02,049           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:02,049                 even if it does not contain any `.py` files.
2024-05-10T09:49:02,049                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:02,050                 directory, all directories are treated like packages.
2024-05-10T09:49:02,050           ********************************************************************************

2024-05-10T09:49:02,051   !!
2024-05-10T09:49:02,052     check.warn(importable)
2024-05-10T09:49:02,052   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-05-10T09:49:02,053   !!

2024-05-10T09:49:02,054           ********************************************************************************
2024-05-10T09:49:02,054           ############################
2024-05-10T09:49:02,055           # Package would be ignored #
2024-05-10T09:49:02,055           ############################
2024-05-10T09:49:02,056           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-05-10T09:49:02,056           but it is absent from setuptools' `packages` configuration.

2024-05-10T09:49:02,057           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T09:49:02,058           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-05-10T09:49:02,058           to the `packages` configuration field.

2024-05-10T09:49:02,059           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T09:49:02,059           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T09:49:02,060           instead of `find_packages(...)`/`find:`).

2024-05-10T09:49:02,061           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T09:49:02,062           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T09:49:02,063           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-05-10T09:49:02,064           already explicitly excluding 'moleculekit.wrapping' via
2024-05-10T09:49:02,064           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T09:49:02,065           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T09:49:02,065           combination with a more fine grained `package-data` configuration.

2024-05-10T09:49:02,067           You can read more about "package data files" on setuptools documentation page:

2024-05-10T09:49:02,067           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T09:49:02,069           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T09:49:02,069                 even if it does not contain any `.py` files.
2024-05-10T09:49:02,069                 On the other hand, currently there is no concept of package data
2024-05-10T09:49:02,070                 directory, all directories are treated like packages.
2024-05-10T09:49:02,070           ********************************************************************************

2024-05-10T09:49:02,071   !!
2024-05-10T09:49:02,071     check.warn(importable)
2024-05-10T09:49:02,072   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-05-10T09:49:02,072   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-05-10T09:49:02,073   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-05-10T09:49:02,073   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-05-10T09:49:02,073   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-05-10T09:49:02,074   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-05-10T09:49:02,074   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-05-10T09:49:02,075   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-05-10T09:49:02,075   creating build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-05-10T09:49:02,076   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-05-10T09:49:02,076   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-05-10T09:49:02,077   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-05-10T09:49:02,077   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-05-10T09:49:02,078   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-05-10T09:49:02,078   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-05-10T09:49:02,079   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-05-10T09:49:02,079   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-05-10T09:49:02,080   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-05-10T09:49:02,080   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-05-10T09:49:02,081   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-05-10T09:49:02,081   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-05-10T09:49:02,082   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-05-10T09:49:02,082   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-05-10T09:49:02,083   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2024-05-10T09:49:02,083   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,084   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,084   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,085   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,086   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,086   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,086   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,087   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,087   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,088   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,088   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,088   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,089   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,089   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,090   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,090   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,091   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,091   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,092   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,092   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,093   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,093   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,094   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,094   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,095   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,095   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,096   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,096   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,097   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,097   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,097   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,098   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,098   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,099   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,099   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,100   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,100   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,100   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,101   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,101   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,102   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,102   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,102   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,103   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,103   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,104   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,104   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,105   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,105   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,106   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,106   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,107   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,107   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,108   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,108   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,109   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,109   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,110   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,110   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,111   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,111   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,111   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,112   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,112   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,113   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,113   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,114   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,114   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,115   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,115   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,115   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,116   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,116   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,117   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,117   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,118   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,118   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,119   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,119   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,120   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,120   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,121   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,121   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,122   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,122   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,123   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,125   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,126   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,128   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,130   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,132   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,134   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,136   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,138   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,141   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,143   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,146   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,148   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,151   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,153   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,156   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,158   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,161   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,163   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,166   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,168   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,171   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,173   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,176   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,178   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,181   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,183   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,186   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,188   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,191   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,193   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,196   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,198   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,201   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,203   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,206   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,208   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,210   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,213   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,215   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,218   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,220   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,223   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,226   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,229   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,231   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,233   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,236   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,238   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,241   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,242   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,245   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,247   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,249   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,251   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,253   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,254   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,257   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,258   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,260   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,262   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,264   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,266   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,268   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,269   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,272   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,274   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,276   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,278   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,280   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,282   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,284   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,286   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,288   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,290   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,293   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,294   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,297   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,298   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,301   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,302   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,305   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,306   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,309   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,310   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,312   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,315   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,317   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,319   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,321   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,323   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-05-10T09:49:02,325   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-05-10T09:49:02,326   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-05-10T09:49:02,346   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-05-10T09:49:02,348   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-05-10T09:49:02,350   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-05-10T09:49:02,350   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-05-10T09:49:02,353   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-05-10T09:49:02,354   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-05-10T09:49:02,359   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-05-10T09:49:02,360   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-05-10T09:49:02,380   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-05-10T09:49:02,382   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-05-10T09:49:02,383   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-05-10T09:49:02,399   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-05-10T09:49:02,402   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-05-10T09:49:02,405   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-05-10T09:49:02,406   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-05-10T09:49:02,408   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-05-10T09:49:02,411   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-05-10T09:49:02,414   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-05-10T09:49:02,415   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-05-10T09:49:02,418   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-05-10T09:49:02,419   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-05-10T09:49:02,435   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-05-10T09:49:02,438   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-05-10T09:49:02,440   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-05-10T09:49:02,441   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-05-10T09:49:02,444   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-05-10T09:49:02,446   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-05-10T09:49:02,449   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-05-10T09:49:02,452   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-05-10T09:49:02,455   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-05-10T09:49:02,456   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-05-10T09:49:02,460   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-05-10T09:49:02,461   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-05-10T09:49:02,482   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-05-10T09:49:02,485   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-05-10T09:49:02,487   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-05-10T09:49:02,490   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-05-10T09:49:02,512   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-05-10T09:49:02,515   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-05-10T09:49:02,517   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-05-10T09:49:02,518   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-05-10T09:49:02,521   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-05-10T09:49:02,523   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-05-10T09:49:02,526   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-05-10T09:49:02,529   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-05-10T09:49:02,531   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-05-10T09:49:02,534   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-05-10T09:49:02,535   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-05-10T09:49:02,538   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-05-10T09:49:02,541   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-05-10T09:49:02,545   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-05-10T09:49:02,547   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-05-10T09:49:02,550   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-05-10T09:49:02,551   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-05-10T09:49:02,572   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-05-10T09:49:02,574   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-05-10T09:49:02,575   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-05-10T09:49:02,595   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-05-10T09:49:02,597   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-05-10T09:49:02,598   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-05-10T09:49:02,618   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-05-10T09:49:02,620   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-05-10T09:49:02,621   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-05-10T09:49:02,641   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-05-10T09:49:02,651   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-05-10T09:49:02,652   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.32'
2024-05-10T09:49:02,652   running build_ext
2024-05-10T09:49:02,663   building 'moleculekit.interactions.hbonds' extension
2024-05-10T09:49:02,664   creating build/temp.linux-armv7l-cpython-311
2024-05-10T09:49:02,665   creating build/temp.linux-armv7l-cpython-311/moleculekit
2024-05-10T09:49:02,665   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2024-05-10T09:49:02,666   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-05-10T09:49:02,667   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2024-05-10T09:49:02,997   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:49:02,998                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:49:02,998                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:49:02,999                    from moleculekit/interactions/hbonds/hbonds.cpp:1265:
2024-05-10T09:49:02,999   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:49:03,000      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:49:03,001         |  ^~~~~~~
2024-05-10T09:49:30,366   In function ‘PyObject* __pyx_pf_11moleculekit_12interactions_6hbonds_calculate(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, float, float, bool, bool)’,
2024-05-10T09:49:30,367       inlined from ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/interactions/hbonds/hbonds.cpp:19989:68:
2024-05-10T09:49:30,367   moleculekit/interactions/hbonds/hbonds.cpp:21019:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:49:30,368   21019 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-05-10T09:49:30,368         |                                                    ^~~~~~~~~~~~~~~
2024-05-10T09:49:30,369   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-05-10T09:49:30,369   moleculekit/interactions/hbonds/hbonds.cpp:20032:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-05-10T09:49:30,370   20032 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-05-10T09:49:30,370         |                                                         ^~~~~~~~~~~~~~~
2024-05-10T09:49:33,369   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:49:33,650   building 'moleculekit.interactions.pipi' extension
2024-05-10T09:49:33,650   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-05-10T09:49:33,651   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2024-05-10T09:49:33,957   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:49:33,958                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:49:33,958                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:49:33,959                    from moleculekit/interactions/pipi/pipi.cpp:1265:
2024-05-10T09:49:33,959   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:49:33,960      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:49:33,960         |  ^~~~~~~
2024-05-10T09:50:06,841   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:50:07,124   building 'moleculekit.interactions.cationpi' extension
2024-05-10T09:50:07,124   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-05-10T09:50:07,125   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2024-05-10T09:50:07,438   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:50:07,439                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:50:07,439                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:50:07,440                    from moleculekit/interactions/cationpi/cationpi.cpp:1265:
2024-05-10T09:50:07,440   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:50:07,441      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:50:07,441         |  ^~~~~~~
2024-05-10T09:50:39,679   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:50:39,969   building 'moleculekit.interactions.sigmahole' extension
2024-05-10T09:50:39,970   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-05-10T09:50:39,970   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-05-10T09:50:40,303   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:50:40,303                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:50:40,304                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:50:40,305                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1265:
2024-05-10T09:50:40,305   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:50:40,306      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:50:40,306         |  ^~~~~~~
2024-05-10T09:51:13,829   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:51:14,116   building 'moleculekit.wrapping' extension
2024-05-10T09:51:14,117   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2024-05-10T09:51:14,117   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2024-05-10T09:51:14,428   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:51:14,428                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:51:14,429                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:51:14,429                    from moleculekit/wrapping/wrapping.cpp:1265:
2024-05-10T09:51:14,430   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:51:14,430      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:51:14,430         |  ^~~~~~~
2024-05-10T09:51:44,521   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:51:44,717   building 'moleculekit.bondguesser_utils' extension
2024-05-10T09:51:44,717   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-05-10T09:51:44,718   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-05-10T09:51:45,023   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:51:45,024                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:51:45,025                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:51:45,025                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1265:
2024-05-10T09:51:45,026   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:51:45,026      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:51:45,027         |  ^~~~~~~
2024-05-10T09:51:47,333   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-05-10T09:51:47,334   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19801:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-05-10T09:51:47,335   19801 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-05-10T09:51:47,336         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-05-10T09:51:47,336   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19813:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-05-10T09:51:47,337   19813 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-05-10T09:51:47,338         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-05-10T09:51:47,339   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19825:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-05-10T09:51:47,340   19825 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-05-10T09:51:47,340         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-05-10T09:51:47,341   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19864:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,341   19864 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-05-10T09:51:47,342         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,342   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19903:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,343   19903 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-05-10T09:51:47,343         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,344   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19942:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,345   19942 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T09:51:47,345         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,346   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19981:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,346   19981 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-05-10T09:51:47,347         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,348   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19987:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,348   19987 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-05-10T09:51:47,349         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,350   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20028:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,350   20028 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-05-10T09:51:47,351         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,352   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20034:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,352   20034 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T09:51:47,353         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,354   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20075:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,354   20075 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-05-10T09:51:47,355         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,356   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20081:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,356   20081 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T09:51:47,357         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,358   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20122:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,359   20122 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-05-10T09:51:47,359         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,360   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20175:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,360   20175 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T09:51:47,361         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,362   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20222:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,362   20222 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T09:51:47,363         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,363   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20263:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,364   20263 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-05-10T09:51:47,364         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,365   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20269:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,366   20269 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-05-10T09:51:47,366         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,367   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20275:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,368   20275 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T09:51:47,369         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,369   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20322:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,370   20322 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-05-10T09:51:47,371         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,372   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20328:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,372   20328 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T09:51:47,373         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,374   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20369:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,374   20369 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-05-10T09:51:47,375         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,376   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20381:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,376   20381 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T09:51:47,377         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,378   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20434:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T09:51:47,379   20434 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T09:51:47,380         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,384   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-05-10T09:51:47,384   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21056:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T09:51:47,385   21056 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-05-10T09:51:47,385         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-05-10T09:51:47,386   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21093:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T09:51:47,387   21093 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-05-10T09:51:47,387         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-05-10T09:52:13,897   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:52:14,167   building 'moleculekit.atomselect_utils' extension
2024-05-10T09:52:14,168   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-05-10T09:52:14,169   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-05-10T09:52:14,485   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:52:14,485                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:52:14,486                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:52:14,486                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1282:
2024-05-10T09:52:14,487   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:52:14,488      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:52:14,488         |  ^~~~~~~
2024-05-10T09:52:17,010   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-05-10T09:52:17,010   moleculekit/atomselect_utils/atomselect_utils.cpp:23255:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T09:52:17,011   23255 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-05-10T09:52:17,012         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-05-10T09:52:17,020   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-05-10T09:52:17,020   moleculekit/atomselect_utils/atomselect_utils.cpp:23507:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T09:52:17,021   23507 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-05-10T09:52:17,021         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-05-10T09:52:17,029   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-05-10T09:52:17,030   moleculekit/atomselect_utils/atomselect_utils.cpp:23774:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T09:52:17,030   23774 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-05-10T09:52:17,031         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-05-10T09:52:51,312   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:52:51,601   building 'moleculekit.distance_utils' extension
2024-05-10T09:52:51,601   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-05-10T09:52:51,602   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2024-05-10T09:52:51,912   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:52:51,913                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:52:51,913                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:52:51,914                    from moleculekit/distance_utils/distance_utils.cpp:1265:
2024-05-10T09:52:51,914   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:52:51,915      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:52:51,916         |  ^~~~~~~
2024-05-10T09:52:54,318   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-05-10T09:52:54,318   moleculekit/distance_utils/distance_utils.cpp:21359:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T09:52:54,319   21359 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-05-10T09:52:54,319         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-05-10T09:52:54,320   moleculekit/distance_utils/distance_utils.cpp:21371:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T09:52:54,320   21371 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-05-10T09:52:54,321         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-05-10T09:53:31,452   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:53:31,740   building 'moleculekit.occupancy_utils' extension
2024-05-10T09:53:31,741   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-05-10T09:53:31,742   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-05-10T09:53:32,055   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:53:32,055                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:53:32,056                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:53:32,057                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1265:
2024-05-10T09:53:32,057   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:53:32,058      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:53:32,058         |  ^~~~~~~
2024-05-10T09:53:59,124   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:53:59,310   building 'moleculekit.cython_utils' extension
2024-05-10T09:53:59,311   creating build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-05-10T09:53:59,311   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -O3
2024-05-10T09:53:59,621   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:53:59,622                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:53:59,622                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:53:59,623                    from moleculekit/cython_utils/cython_utils.cpp:1265:
2024-05-10T09:53:59,623   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:53:59,624      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:53:59,624         |  ^~~~~~~
2024-05-10T09:54:29,496   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:54:29,766   building 'moleculekit.xtc' extension
2024-05-10T09:54:29,767   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats
2024-05-10T09:54:29,767   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-05-10T09:54:29,768   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-05-10T09:54:29,769   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-05-10T09:54:30,418   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,418      66 |         "OK",
2024-05-10T09:54:30,419         |         ^~~~
2024-05-10T09:54:30,420   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,420      67 |         "Header",
2024-05-10T09:54:30,421         |         ^~~~~~~~
2024-05-10T09:54:30,422   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,422      68 |         "String",
2024-05-10T09:54:30,423         |         ^~~~~~~~
2024-05-10T09:54:30,424   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,424      69 |         "Double",
2024-05-10T09:54:30,425         |         ^~~~~~~~
2024-05-10T09:54:30,426   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,426      70 |         "Integer",
2024-05-10T09:54:30,427         |         ^~~~~~~~~
2024-05-10T09:54:30,428   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,429      71 |         "Float",
2024-05-10T09:54:30,429         |         ^~~~~~~
2024-05-10T09:54:30,430   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,431      72 |         "Unsigned integer",
2024-05-10T09:54:30,432         |         ^~~~~~~~~~~~~~~~~~
2024-05-10T09:54:30,432   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,433      73 |         "Compressed 3D coordinate",
2024-05-10T09:54:30,433         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:54:30,434   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,434      74 |         "Closing file",
2024-05-10T09:54:30,435         |         ^~~~~~~~~~~~~~
2024-05-10T09:54:30,435   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,436      75 |         "Magic number",
2024-05-10T09:54:30,436         |         ^~~~~~~~~~~~~~
2024-05-10T09:54:30,437   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,437      76 |         "Not enough memory",
2024-05-10T09:54:30,438         |         ^~~~~~~~~~~~~~~~~~~
2024-05-10T09:54:30,438   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,439      77 |         "End of file",
2024-05-10T09:54:30,440         |         ^~~~~~~~~~~~~
2024-05-10T09:54:30,440   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:54:30,441      78 |         "File not found"
2024-05-10T09:54:30,441         |         ^~~~~~~~~~~~~~~~
2024-05-10T09:54:30,442   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-05-10T09:54:30,443   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,444     459 |     while (size >= num && num_of_bits < 32)
2024-05-10T09:54:30,444         |            ~~~~~^~~~~~
2024-05-10T09:54:30,445   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-05-10T09:54:30,446   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:54:30,447     505 |     while (bytes[num_of_bytes] >= num)
2024-05-10T09:54:30,447         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-05-10T09:54:30,448   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-05-10T09:54:30,448   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,449     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-05-10T09:54:30,450         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-05-10T09:54:30,450   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,451     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-05-10T09:54:30,452         |                             ~~^~~~~~~~~~~~~~
2024-05-10T09:54:30,452   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,453     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-05-10T09:54:30,454         |                             ~~^~~~~~~~~~~~~~~~
2024-05-10T09:54:30,454   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-05-10T09:54:30,455   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:54:30,456     664 |                 if (lastbits < num_of_bits)
2024-05-10T09:54:30,456         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-05-10T09:54:30,457   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-05-10T09:54:30,457   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:54:30,458     785 |         if(size3>xfp->buf1size)
2024-05-10T09:54:30,458         |            ~~~~~^~~~~~~~~~~~~~
2024-05-10T09:54:30,459   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:54:30,459     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T09:54:30,460         |                          ^
2024-05-10T09:54:30,460   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,461     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-05-10T09:54:30,461         |                                    ~~~~~~~~~^~~~~~~~
2024-05-10T09:54:30,462   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,462     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-05-10T09:54:30,463         |                                    ~~~~~~~~~^~~~~~~~
2024-05-10T09:54:30,464   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,464     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-05-10T09:54:30,465         |                                    ~~~~~~~~~^~~~~~~~
2024-05-10T09:54:30,465   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,466     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-05-10T09:54:30,467         |                                    ~~~~~~~~~^~~~~~~~
2024-05-10T09:54:30,467   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,468     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-05-10T09:54:30,468         |                                    ~~~~~~~~~^~~~~~~~
2024-05-10T09:54:30,469   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,470     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-05-10T09:54:30,470         |                                    ~~~~~~~~~^~~~~~~~
2024-05-10T09:54:30,471   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-05-10T09:54:30,472     756 |         int smallidx,  minidx, maxidx;
2024-05-10T09:54:30,472         |                        ^~~~~~
2024-05-10T09:54:30,473   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-05-10T09:54:30,474     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-05-10T09:54:30,475         |                                ^~~~~~
2024-05-10T09:54:30,475   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-05-10T09:54:30,476     763 |         int errval=1;
2024-05-10T09:54:30,477         |             ^~~~~~
2024-05-10T09:54:30,477   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-05-10T09:54:30,478   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:54:30,478    1011 |         if(size3>xfp->buf1size)
2024-05-10T09:54:30,479         |            ~~~~~^~~~~~~~~~~~~~
2024-05-10T09:54:30,479   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,480    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-05-10T09:54:30,480         |                                 ~~~~~~~~^~~~~~~
2024-05-10T09:54:30,481   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,481    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-05-10T09:54:30,482         |                           ~~~~~~~~^~~~~~~
2024-05-10T09:54:30,482   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,483    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-05-10T09:54:30,484         |                           ~~~~~~~~^~~~~~~
2024-05-10T09:54:30,484   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,485    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-05-10T09:54:30,486         |                         ^
2024-05-10T09:54:30,487   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:54:30,487    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T09:54:30,488         |                          ^
2024-05-10T09:54:30,489   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,490    1275 |         if(tmp==(unsigned int)buf2[0])
2024-05-10T09:54:30,490         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:54:30,491   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-05-10T09:54:30,492    1001 |         int errval;
2024-05-10T09:54:30,492         |             ^~~~~~
2024-05-10T09:54:30,493   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-05-10T09:54:30,494   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:54:30,494    1316 |         if(size3>xfp->buf1size)
2024-05-10T09:54:30,495         |            ~~~~~^~~~~~~~~~~~~~
2024-05-10T09:54:30,496   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:54:30,496    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T09:54:30,497         |                          ^
2024-05-10T09:54:30,498   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-05-10T09:54:30,499    1289 |         int smallidx,  maxidx, minidx;
2024-05-10T09:54:30,499         |                                ^~~~~~
2024-05-10T09:54:30,500   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-05-10T09:54:30,500    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-05-10T09:54:30,501         |                                ^~~~~~
2024-05-10T09:54:30,501   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-05-10T09:54:30,502    1297 |         int errval=1;
2024-05-10T09:54:30,502         |             ^~~~~~
2024-05-10T09:54:30,503   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-05-10T09:54:30,503   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:54:30,504    1513 |         if(size3>xfp->buf1size) {
2024-05-10T09:54:30,504         |            ~~~~~^~~~~~~~~~~~~~
2024-05-10T09:54:30,505   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,505    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-05-10T09:54:30,506         |                         ^
2024-05-10T09:54:30,507   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:54:30,507    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T09:54:30,508         |                          ^
2024-05-10T09:54:30,509   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:54:30,510    1743 |         if(tmp==(unsigned int)buf2[0])
2024-05-10T09:54:30,510         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:54:30,511   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-05-10T09:54:30,512    1504 |         int errval=1;
2024-05-10T09:54:30,513         |             ^~~~~~
2024-05-10T09:54:33,347   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-05-10T09:54:33,614   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o
2024-05-10T09:54:34,388   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-05-10T09:54:34,389   moleculekit/fileformats/xtc/src/xtc.cpp:234:37: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T09:54:34,390     234 |                 for (aidx = 0; aidx < natoms; aidx++)
2024-05-10T09:54:34,391         |                                ~~~~~^~~~~~~~
2024-05-10T09:54:34,399   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-05-10T09:54:34,400   moleculekit/fileformats/xtc/src/xtc.cpp:436:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T09:54:34,400     436 |         for (f = 0; f < nframes; f++)
2024-05-10T09:54:34,401         |                     ~~^~~~~~~~~
2024-05-10T09:54:34,401   moleculekit/fileformats/xtc/src/xtc.cpp:451:31: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T09:54:34,402     451 |                 for (i = 0; i < natoms; i++)
2024-05-10T09:54:34,402         |                             ~~^~~~~~~~
2024-05-10T09:54:34,406   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-05-10T09:54:34,407   moleculekit/fileformats/xtc/src/xtc.cpp:541:45: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T09:54:34,408     541 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-05-10T09:54:34,408         |                                        ~~~~~^~~~~~~~
2024-05-10T09:54:34,412   moleculekit/fileformats/xtc/src/xtc.cpp:610:45: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T09:54:34,412     610 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-05-10T09:54:34,413         |                                        ~~~~~^~~~~~~~
2024-05-10T09:54:35,329   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o
2024-05-10T09:54:35,639   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:54:35,639                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:54:35,640                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:54:35,641                    from moleculekit/fileformats/xtc/xtc.cpp:1269:
2024-05-10T09:54:35,641   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:54:35,642      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:54:35,643         |  ^~~~~~~
2024-05-10T09:54:59,609   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:54:59,893   building 'moleculekit.trr' extension
2024-05-10T09:54:59,895   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-05-10T09:55:00,009   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-05-10T09:55:00,674   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,674      66 |         "OK",
2024-05-10T09:55:00,675         |         ^~~~
2024-05-10T09:55:00,675   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,676      67 |         "Header",
2024-05-10T09:55:00,676         |         ^~~~~~~~
2024-05-10T09:55:00,677   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,678      68 |         "String",
2024-05-10T09:55:00,678         |         ^~~~~~~~
2024-05-10T09:55:00,679   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,680      69 |         "Double",
2024-05-10T09:55:00,680         |         ^~~~~~~~
2024-05-10T09:55:00,681   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,682      70 |         "Integer",
2024-05-10T09:55:00,682         |         ^~~~~~~~~
2024-05-10T09:55:00,683   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,684      71 |         "Float",
2024-05-10T09:55:00,684         |         ^~~~~~~
2024-05-10T09:55:00,685   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,685      72 |         "Unsigned integer",
2024-05-10T09:55:00,686         |         ^~~~~~~~~~~~~~~~~~
2024-05-10T09:55:00,687   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,688      73 |         "Compressed 3D coordinate",
2024-05-10T09:55:00,688         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:00,689   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,689      74 |         "Closing file",
2024-05-10T09:55:00,690         |         ^~~~~~~~~~~~~~
2024-05-10T09:55:00,691   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,691      75 |         "Magic number",
2024-05-10T09:55:00,692         |         ^~~~~~~~~~~~~~
2024-05-10T09:55:00,693   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,694      76 |         "Not enough memory",
2024-05-10T09:55:00,694         |         ^~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:00,695   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,696      77 |         "End of file",
2024-05-10T09:55:00,697         |         ^~~~~~~~~~~~~
2024-05-10T09:55:00,697   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T09:55:00,698      78 |         "File not found"
2024-05-10T09:55:00,698         |         ^~~~~~~~~~~~~~~~
2024-05-10T09:55:00,699   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-05-10T09:55:00,699   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,700     459 |     while (size >= num && num_of_bits < 32)
2024-05-10T09:55:00,700         |            ~~~~~^~~~~~
2024-05-10T09:55:00,701   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-05-10T09:55:00,701   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:55:00,702     505 |     while (bytes[num_of_bytes] >= num)
2024-05-10T09:55:00,702         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-05-10T09:55:00,703   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-05-10T09:55:00,704   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,704     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-05-10T09:55:00,705         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:00,705   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,706     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-05-10T09:55:00,707         |                             ~~^~~~~~~~~~~~~~
2024-05-10T09:55:00,707   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,708     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-05-10T09:55:00,709         |                             ~~^~~~~~~~~~~~~~~~
2024-05-10T09:55:00,710   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-05-10T09:55:00,710   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:55:00,711     664 |                 if (lastbits < num_of_bits)
2024-05-10T09:55:00,712         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-05-10T09:55:00,712   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-05-10T09:55:00,713   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:55:00,714     785 |         if(size3>xfp->buf1size)
2024-05-10T09:55:00,714         |            ~~~~~^~~~~~~~~~~~~~
2024-05-10T09:55:00,715   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:55:00,715     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T09:55:00,716         |                          ^
2024-05-10T09:55:00,717   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,718     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-05-10T09:55:00,719         |                                    ~~~~~~~~~^~~~~~~~
2024-05-10T09:55:00,719   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,720     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-05-10T09:55:00,720         |                                    ~~~~~~~~~^~~~~~~~
2024-05-10T09:55:00,721   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,721     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-05-10T09:55:00,722         |                                    ~~~~~~~~~^~~~~~~~
2024-05-10T09:55:00,722   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,723     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-05-10T09:55:00,723         |                                    ~~~~~~~~~^~~~~~~~
2024-05-10T09:55:00,724   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,724     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-05-10T09:55:00,725         |                                    ~~~~~~~~~^~~~~~~~
2024-05-10T09:55:00,725   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,726     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-05-10T09:55:00,727         |                                    ~~~~~~~~~^~~~~~~~
2024-05-10T09:55:00,727   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-05-10T09:55:00,728     756 |         int smallidx,  minidx, maxidx;
2024-05-10T09:55:00,729         |                        ^~~~~~
2024-05-10T09:55:00,729   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-05-10T09:55:00,730     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-05-10T09:55:00,731         |                                ^~~~~~
2024-05-10T09:55:00,731   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-05-10T09:55:00,732     763 |         int errval=1;
2024-05-10T09:55:00,733         |             ^~~~~~
2024-05-10T09:55:00,733   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-05-10T09:55:00,734   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:55:00,735    1011 |         if(size3>xfp->buf1size)
2024-05-10T09:55:00,735         |            ~~~~~^~~~~~~~~~~~~~
2024-05-10T09:55:00,736   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,736    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-05-10T09:55:00,737         |                                 ~~~~~~~~^~~~~~~
2024-05-10T09:55:00,738   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,738    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-05-10T09:55:00,739         |                           ~~~~~~~~^~~~~~~
2024-05-10T09:55:00,740   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,740    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-05-10T09:55:00,741         |                           ~~~~~~~~^~~~~~~
2024-05-10T09:55:00,741   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,742    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-05-10T09:55:00,742         |                         ^
2024-05-10T09:55:00,743   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:55:00,743    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T09:55:00,744         |                          ^
2024-05-10T09:55:00,745   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,745    1275 |         if(tmp==(unsigned int)buf2[0])
2024-05-10T09:55:00,746         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:00,746   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-05-10T09:55:00,747    1001 |         int errval;
2024-05-10T09:55:00,748         |             ^~~~~~
2024-05-10T09:55:00,748   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-05-10T09:55:00,749   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:55:00,750    1316 |         if(size3>xfp->buf1size)
2024-05-10T09:55:00,750         |            ~~~~~^~~~~~~~~~~~~~
2024-05-10T09:55:00,751   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:55:00,752    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T09:55:00,752         |                          ^
2024-05-10T09:55:00,753   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-05-10T09:55:00,754    1289 |         int smallidx,  maxidx, minidx;
2024-05-10T09:55:00,755         |                                ^~~~~~
2024-05-10T09:55:00,756   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-05-10T09:55:00,756    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-05-10T09:55:00,757         |                                ^~~~~~
2024-05-10T09:55:00,757   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-05-10T09:55:00,758    1297 |         int errval=1;
2024-05-10T09:55:00,759         |             ^~~~~~
2024-05-10T09:55:00,759   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-05-10T09:55:00,760   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:55:00,761    1513 |         if(size3>xfp->buf1size) {
2024-05-10T09:55:00,761         |            ~~~~~^~~~~~~~~~~~~~
2024-05-10T09:55:00,763   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,763    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-05-10T09:55:00,764         |                         ^
2024-05-10T09:55:00,765   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:55:00,766    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T09:55:00,766         |                          ^
2024-05-10T09:55:00,769   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:55:00,770    1743 |         if(tmp==(unsigned int)buf2[0])
2024-05-10T09:55:00,770         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:00,771   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-05-10T09:55:00,772    1504 |         int errval=1;
2024-05-10T09:55:00,772         |             ^~~~~~
2024-05-10T09:55:03,607   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-05-10T09:55:03,707   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-05-10T09:55:03,708   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-05-10T09:55:03,708     111 |         if (slen != strlen(version)+1)
2024-05-10T09:55:03,709         |                  ^~
2024-05-10T09:55:03,710   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-05-10T09:55:03,710     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-05-10T09:55:03,711         |                                              ^~
2024-05-10T09:55:04,411   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o
2024-05-10T09:55:04,795   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:55:04,795                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:55:04,796                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:55:04,797                    from moleculekit/fileformats/xtc/trr.c:1261:
2024-05-10T09:55:04,797   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:55:04,798      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:55:04,798         |  ^~~~~~~
2024-05-10T09:55:05,578   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-05-10T09:55:05,592   moleculekit/fileformats/xtc/trr.c:16352:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-05-10T09:55:05,593   16352 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-05-10T09:55:05,594         |                                     ^~
2024-05-10T09:55:29,050   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-05-10T09:55:29,051   moleculekit/fileformats/xtc/trr.c:1163:40: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:29,051    1163 |   #define PyInt_FromLong               PyLong_FromLong
2024-05-10T09:55:29,052         |                                        ^~~~~~~~~~~~~~~
2024-05-10T09:55:29,065   moleculekit/fileformats/xtc/trr.c:14260:7: note: ‘__pyx_v_status’ was declared here
2024-05-10T09:55:29,066   14260 |   int __pyx_v_status;
2024-05-10T09:55:29,067         |       ^~~~~~~~~~~~~~
2024-05-10T09:55:40,691   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-05-10T09:55:40,702   moleculekit/fileformats/xtc/trr.c:11559:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,703   11559 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-05-10T09:55:40,703         |                   ^
2024-05-10T09:55:40,712   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ was declared here
2024-05-10T09:55:40,712   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-05-10T09:55:40,713         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,722   moleculekit/fileformats/xtc/trr.c:11555:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,723   11555 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-05-10T09:55:40,724         |                   ^
2024-05-10T09:55:40,732   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ was declared here
2024-05-10T09:55:40,733   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-05-10T09:55:40,733         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,734   moleculekit/fileformats/xtc/trr.c:2509:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,735    2509 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-05-10T09:55:40,735         |                                                                                               ^
2024-05-10T09:55:40,744   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-05-10T09:55:40,744   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-05-10T09:55:40,745         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,754   moleculekit/fileformats/xtc/trr.c:11549:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,755   11549 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-05-10T09:55:40,756         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-05-10T09:55:40,764   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ was declared here
2024-05-10T09:55:40,765   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-05-10T09:55:40,766         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,775   moleculekit/fileformats/xtc/trr.c:11502:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,775   11502 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-05-10T09:55:40,776         |                   ^
2024-05-10T09:55:40,784   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ was declared here
2024-05-10T09:55:40,785   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-05-10T09:55:40,785         |                     ^~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,795   moleculekit/fileformats/xtc/trr.c:11498:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,795   11498 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-05-10T09:55:40,796         |                   ^
2024-05-10T09:55:40,805   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ was declared here
2024-05-10T09:55:40,805   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-05-10T09:55:40,805         |                     ^~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,807   moleculekit/fileformats/xtc/trr.c:2509:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,807    2509 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-05-10T09:55:40,807         |                                                                                               ^
2024-05-10T09:55:40,816   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-05-10T09:55:40,817   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-05-10T09:55:40,817         |                     ^~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,827   moleculekit/fileformats/xtc/trr.c:11492:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,827   11492 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-05-10T09:55:40,828         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-05-10T09:55:40,836   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ was declared here
2024-05-10T09:55:40,837   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-05-10T09:55:40,838         |                     ^~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,847   moleculekit/fileformats/xtc/trr.c:11891:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,848   11891 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-05-10T09:55:40,848         |                 ^
2024-05-10T09:55:40,857   moleculekit/fileformats/xtc/trr.c:10113:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ was declared here
2024-05-10T09:55:40,858   10113 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-05-10T09:55:40,858         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,868   moleculekit/fileformats/xtc/trr.c:11887:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,868   11887 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-05-10T09:55:40,869         |                 ^
2024-05-10T09:55:40,877   moleculekit/fileformats/xtc/trr.c:10113:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ was declared here
2024-05-10T09:55:40,878   10113 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-05-10T09:55:40,879         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,888   moleculekit/fileformats/xtc/trr.c:11732:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,889   11732 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-05-10T09:55:40,890         |                   ^
2024-05-10T09:55:40,898   moleculekit/fileformats/xtc/trr.c:10109:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ was declared here
2024-05-10T09:55:40,898   10109 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-05-10T09:55:40,899         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,908   moleculekit/fileformats/xtc/trr.c:11728:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,909   11728 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-05-10T09:55:40,910         |                   ^
2024-05-10T09:55:40,918   moleculekit/fileformats/xtc/trr.c:10109:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ was declared here
2024-05-10T09:55:40,919   10109 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-05-10T09:55:40,919         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,929   moleculekit/fileformats/xtc/trr.c:11784:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,930   11784 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-05-10T09:55:40,930         |                   ^
2024-05-10T09:55:40,939   moleculekit/fileformats/xtc/trr.c:10093:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ was declared here
2024-05-10T09:55:40,939   10093 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-05-10T09:55:40,940         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:40,949   moleculekit/fileformats/xtc/trr.c:11780:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:55:40,950   11780 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-05-10T09:55:40,950         |                   ^
2024-05-10T09:55:40,959   moleculekit/fileformats/xtc/trr.c:10093:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ was declared here
2024-05-10T09:55:40,960   10093 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-05-10T09:55:40,961         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T09:55:47,460   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:55:47,622   building 'moleculekit.dcd' extension
2024-05-10T09:55:47,623   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-05-10T09:55:47,624   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-05-10T09:55:47,625   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o
2024-05-10T09:55:48,023   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:55:48,024                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:55:48,025                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:55:48,026                    from moleculekit/fileformats/dcd/dcd.c:1256:
2024-05-10T09:55:48,026   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:55:48,027      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:55:48,027         |  ^~~~~~~
2024-05-10T09:55:49,332   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-05-10T09:55:49,333                    from moleculekit/fileformats/dcd/dcd.c:1262:
2024-05-10T09:55:49,333   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-05-10T09:55:49,334     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-05-10T09:55:49,334         |            ^~~~~~~~~~~~~
2024-05-10T09:55:49,335   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-05-10T09:55:49,335     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-05-10T09:55:49,336         |            ^~~~~~~~~~~~~~
2024-05-10T09:55:49,336   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-05-10T09:55:49,337     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-05-10T09:55:49,338         |            ^~~~~~~~~~~~~~~
2024-05-10T09:55:49,338   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-05-10T09:55:49,339     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-05-10T09:55:49,340         |                   ^~~~~~~~~
2024-05-10T09:55:49,340   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-05-10T09:55:49,341     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-05-10T09:55:49,342         |                   ^~~~~~~~~
2024-05-10T09:55:49,342   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-05-10T09:55:49,343     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-05-10T09:55:49,344         |                   ^~~~~~~~~
2024-05-10T09:55:49,344   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-05-10T09:55:49,345     394 | static int fio_fclose(fio_fd fd) {
2024-05-10T09:55:49,346         |            ^~~~~~~~~~
2024-05-10T09:55:49,346   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-05-10T09:55:49,347     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-05-10T09:55:49,347         |            ^~~~~~~~
2024-05-10T09:56:03,829   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-05-10T09:56:03,830   moleculekit/fileformats/dcd/dcd.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:56:03,831    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-05-10T09:56:03,831         |                                        ^~~~~~~~~~~~~~~
2024-05-10T09:56:03,838   moleculekit/fileformats/dcd/dcd.c:8022:7: note: ‘__pyx_v_i’ was declared here
2024-05-10T09:56:03,839    8022 |   int __pyx_v_i;
2024-05-10T09:56:03,840         |       ^~~~~~~~~
2024-05-10T09:56:07,199   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-05-10T09:56:07,423   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-05-10T09:56:07,424   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:56:07,425     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-05-10T09:56:07,425         |                                                       ^~
2024-05-10T09:56:07,426   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:56:07,426     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-05-10T09:56:07,427         |                                                      ^~
2024-05-10T09:56:07,428   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:56:07,428     194 |     if (input_integer[0] != dcdcordmagic)
2024-05-10T09:56:07,429         |                          ^~
2024-05-10T09:56:07,433   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:56:07,434     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-05-10T09:56:07,434         |                                               ^~
2024-05-10T09:56:07,435   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T09:56:07,436     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-05-10T09:56:07,437         |                                               ^~
2024-05-10T09:56:07,441   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-05-10T09:56:07,442   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:56:07,443     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-05-10T09:56:07,443         |                       ^~
2024-05-10T09:56:07,444   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T09:56:07,444     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-05-10T09:56:07,445         |                                                 ^~
2024-05-10T09:56:07,473   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-05-10T09:56:07,473   moleculekit/fileformats/dcd/include/endianswap.h: At top level:
2024-05-10T09:56:07,474   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-05-10T09:56:07,474      96 | static void swap2_aligned(void *v, long ndata) {
2024-05-10T09:56:07,475         |             ^~~~~~~~~~~~~
2024-05-10T09:56:07,476   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-05-10T09:56:07,477      32 | static void swap2_unaligned(void *v, long ndata) {
2024-05-10T09:56:07,477         |             ^~~~~~~~~~~~~~~
2024-05-10T09:56:07,478   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-05-10T09:56:07,478   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-05-10T09:56:07,479     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-05-10T09:56:07,479         |            ^~~~~~~~~~~~~
2024-05-10T09:56:07,480   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-05-10T09:56:07,480     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-05-10T09:56:07,481         |            ^~~~~~~~~~~~~~
2024-05-10T09:56:08,754   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:56:08,882   building 'moleculekit.binpos' extension
2024-05-10T09:56:08,882   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-05-10T09:56:08,883   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-05-10T09:56:08,884   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o
2024-05-10T09:56:09,273   In file included from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T09:56:09,274                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T09:56:09,274                    from /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T09:56:09,275                    from moleculekit/fileformats/binpos/binpos.c:1256:
2024-05-10T09:56:09,276   /tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T09:56:09,276      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T09:56:09,277         |  ^~~~~~~
2024-05-10T09:56:23,753   In function ‘__pyx_pf_11moleculekit_6binpos_20BINPOSTrajectoryFile_6_read’,
2024-05-10T09:56:23,753       inlined from ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’ at moleculekit/fileformats/binpos/binpos.c:7504:13:
2024-05-10T09:56:23,760   moleculekit/fileformats/binpos/binpos.c:8045:6: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:56:23,761    8045 |   if (__pyx_t_1) {
2024-05-10T09:56:23,761         |      ^
2024-05-10T09:56:23,762   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-05-10T09:56:23,767   moleculekit/fileformats/binpos/binpos.c:7522:7: note: ‘__pyx_v_status’ was declared here
2024-05-10T09:56:23,768    7522 |   int __pyx_v_status;
2024-05-10T09:56:23,769         |       ^~~~~~~~~~~~~~
2024-05-10T09:56:23,769   moleculekit/fileformats/binpos/binpos.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-05-10T09:56:23,770    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-05-10T09:56:23,770         |                                        ^~~~~~~~~~~~~~~
2024-05-10T09:56:23,776   moleculekit/fileformats/binpos/binpos.c:7519:7: note: ‘__pyx_v_i’ was declared here
2024-05-10T09:56:23,777    7519 |   int __pyx_v_i;
2024-05-10T09:56:23,777         |       ^~~~~~~~~
2024-05-10T09:56:27,215   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o
2024-05-10T09:56:27,549   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:56:27,679   building 'moleculekit.tmalign' extension
2024-05-10T09:56:27,680   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2024-05-10T09:56:27,681   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-05-10T09:56:27,682   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2024-05-10T09:57:01,439   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-c7ag3um_/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2024-05-10T09:57:23,924   In file included from /usr/include/c++/12/vector:70,
2024-05-10T09:57:23,925                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-05-10T09:57:23,926   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-05-10T09:57:23,926   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-05-10T09:57:23,927     439 |       vector<_Tp, _Alloc>::
2024-05-10T09:57:23,927         |       ^~~~~~~~~~~~~~~~~~~
2024-05-10T09:57:24,725   In file included from /usr/include/c++/12/vector:64:
2024-05-10T09:57:24,726   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-05-10T09:57:24,726       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20779:32,
2024-05-10T09:57:24,727       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20264:52:
2024-05-10T09:57:24,728   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-05-10T09:57:24,728    1287 |           _M_realloc_insert(end(), __x);
2024-05-10T09:57:24,729         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-05-10T09:57:24,730   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-05-10T09:57:24,731       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20793:33,
2024-05-10T09:57:24,731       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20264:52:
2024-05-10T09:57:24,732   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-05-10T09:57:24,732    1287 |           _M_realloc_insert(end(), __x);
2024-05-10T09:57:24,733         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-05-10T09:57:24,733   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-05-10T09:57:24,734       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20878:34,
2024-05-10T09:57:24,734       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20264:52:
2024-05-10T09:57:24,735   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-05-10T09:57:24,736    1287 |           _M_realloc_insert(end(), __x);
2024-05-10T09:57:24,736         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-05-10T09:57:27,074   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2024-05-10T09:57:27,461   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-05-10T09:57:27,462   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.32'
2024-05-10T09:57:27,462   installing to build/bdist.linux-armv7l/wheel
2024-05-10T09:57:27,463   running install
2024-05-10T09:57:27,486   running install_lib
2024-05-10T09:57:27,491   creating build/bdist.linux-armv7l
2024-05-10T09:57:27,492   creating build/bdist.linux-armv7l/wheel
2024-05-10T09:57:27,494   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:27,495   copying build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:27,508   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-05-10T09:57:27,509   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-05-10T09:57:27,512   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-05-10T09:57:27,513   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-05-10T09:57:27,516   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-05-10T09:57:27,517   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-05-10T09:57:27,519   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-05-10T09:57:27,521   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-05-10T09:57:27,524   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-05-10T09:57:27,525   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-05-10T09:57:27,527   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-05-10T09:57:27,530   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-05-10T09:57:27,544   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-05-10T09:57:27,545   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-05-10T09:57:27,558   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-05-10T09:57:27,561   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-05-10T09:57:27,562   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-05-10T09:57:27,564   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-05-10T09:57:27,566   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-05-10T09:57:27,568   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-05-10T09:57:27,570   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-05-10T09:57:27,573   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-05-10T09:57:27,576   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-05-10T09:57:27,577   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-05-10T09:57:27,580   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T09:57:27,582   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T09:57:27,583   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T09:57:27,585   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T09:57:27,587   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T09:57:27,589   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T09:57:27,592   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T09:57:27,594   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T09:57:27,596   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T09:57:27,599   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T09:57:27,601   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T09:57:27,603   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T09:57:27,627   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T09:57:27,630   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T09:57:27,650   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T09:57:27,652   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-05-10T09:57:27,654   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-05-10T09:57:27,656   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-05-10T09:57:27,658   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-05-10T09:57:27,660   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-05-10T09:57:27,664   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-05-10T09:57:27,667   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-05-10T09:57:27,669   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-05-10T09:57:27,671   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:27,702   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-05-10T09:57:27,703   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-05-10T09:57:27,705   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-05-10T09:57:27,725   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:27,729   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-05-10T09:57:27,730   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-05-10T09:57:27,758   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-05-10T09:57:27,762   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-05-10T09:57:27,763   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-05-10T09:57:27,787   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-05-10T09:57:27,790   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:27,792   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:27,819   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-05-10T09:57:27,820   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-05-10T09:57:27,822   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-05-10T09:57:27,842   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:27,868   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-05-10T09:57:27,869   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-05-10T09:57:28,067   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-05-10T09:57:28,071   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,072   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,074   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,076   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,078   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,080   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,082   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,084   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,086   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,088   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,090   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,092   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,094   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,097   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,099   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,101   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,103   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,105   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,107   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,109   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,111   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,114   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,116   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,118   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,119   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,122   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,123   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,126   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,128   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,130   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,132   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,134   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,136   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,138   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,140   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,143   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,145   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,147   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,149   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,151   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,153   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,155   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,158   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,161   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,163   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,166   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,169   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,171   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,174   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,176   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,178   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,181   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,183   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,186   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,188   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,191   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,193   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,221   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,224   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,226   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,229   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,237   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,257   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,275   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,277   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,279   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,281   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,291   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,295   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,307   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,313   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,315   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,317   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,325   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,331   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,333   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,337   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,346   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,348   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,350   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,352   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,357   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,359   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,361   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,363   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,365   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,367   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,377   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-05-10T09:57:28,380   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,382   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,384   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,386   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,387   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,389   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,391   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,393   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,395   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,397   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,398   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,400   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,402   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,404   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,406   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,407   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,409   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,410   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,412   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,414   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,416   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,417   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,419   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,421   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,423   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,425   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,427   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,428   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,430   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,432   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,434   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,436   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,437   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,439   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T09:57:28,441   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-05-10T09:57:28,443   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-05-10T09:57:28,443   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-05-10T09:57:28,445   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-05-10T09:57:28,447   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,449   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,451   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,500   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-05-10T09:57:28,501   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-05-10T09:57:28,521   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-05-10T09:57:28,523   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,542   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,544   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-05-10T09:57:28,545   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-05-10T09:57:28,549   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-05-10T09:57:28,551   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-05-10T09:57:28,553   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,556   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,557   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,560   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,563   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-05-10T09:57:28,564   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-05-10T09:57:28,566   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-05-10T09:57:28,568   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,570   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,573   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,576   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,578   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,580   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,582   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,584   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,586   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,588   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,590   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,592   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T09:57:28,594   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,596   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,598   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,602   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,604   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,607   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,608   copying build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,629   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-05-10T09:57:28,630   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-05-10T09:57:28,633   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-05-10T09:57:28,653   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,656   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,658   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,660   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-05-10T09:57:28,661   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-05-10T09:57:28,662   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-05-10T09:57:28,664   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-05-10T09:57:28,667   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-05-10T09:57:28,669   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-05-10T09:57:28,671   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-05-10T09:57:28,672   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-05-10T09:57:28,674   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-05-10T09:57:28,676   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-05-10T09:57:28,677   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-05-10T09:57:28,679   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-05-10T09:57:28,681   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-05-10T09:57:28,684   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-05-10T09:57:28,685   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-05-10T09:57:28,686   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,688   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,709   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T09:57:28,709   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T09:57:28,712   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-05-10T09:57:28,713   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-05-10T09:57:28,716   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-05-10T09:57:28,718   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-05-10T09:57:28,720   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-05-10T09:57:28,721   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T09:57:28,724   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T09:57:28,726   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T09:57:28,729   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmolcdp.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T09:57:28,731   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T09:57:28,733   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T09:57:28,735   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,755   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,759   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:28,762   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-05-10T09:57:28,763   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-05-10T09:57:28,770   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-05-10T09:57:28,773   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-05-10T09:57:28,775   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-05-10T09:57:28,777   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T09:57:28,778   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T09:57:28,799   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T09:57:28,824   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-05-10T09:57:28,825   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-05-10T09:57:28,849   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-05-10T09:57:28,851   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-05-10T09:57:28,852   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-05-10T09:57:28,855   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-05-10T09:57:28,875   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-05-10T09:57:28,875   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-05-10T09:57:28,878   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-05-10T09:57:28,897   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T09:57:28,918   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T09:57:28,940   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-05-10T09:57:28,941   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-05-10T09:57:28,969   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-05-10T09:57:28,971   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T09:57:28,975   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T09:57:28,978   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:28,979   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:28,982   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:28,985   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:28,988   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:28,990   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:28,993   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:28,995   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:28,998   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:29,001   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:29,004   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:29,007   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:29,010   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:29,012   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:29,015   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:29,018   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T09:57:29,020   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:29,022   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:29,026   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-05-10T09:57:29,027   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-05-10T09:57:29,030   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-05-10T09:57:29,056   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-05-10T09:57:29,058   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-05-10T09:57:29,059   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-05-10T09:57:29,062   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-05-10T09:57:29,063   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-05-10T09:57:29,069   copying build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:29,081   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:29,084   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:29,103   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:29,105   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T09:57:29,107   running install_egg_info
2024-05-10T09:57:29,112   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.32-py3.11.egg-info
2024-05-10T09:57:29,124   running install_scripts
2024-05-10T09:57:29,174   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.32.dist-info/WHEEL
2024-05-10T09:57:29,177   creating '/tmp/pip-wheel-r3df2rc6/.tmp-ihxob49e/moleculekit-1.8.32-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-05-10T09:57:29,180   adding 'moleculekit/__init__.py'
2024-05-10T09:57:29,181   adding 'moleculekit/_version.py'
2024-05-10T09:57:29,183   adding 'moleculekit/align.py'
2024-05-10T09:57:29,505   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:29,665   adding 'moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:29,671   adding 'moleculekit/bondguesser.py'
2024-05-10T09:57:29,916   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:29,924   adding 'moleculekit/config.py'
2024-05-10T09:57:30,184   adding 'moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:30,344   adding 'moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:30,349   adding 'moleculekit/dihedral.py'
2024-05-10T09:57:30,351   adding 'moleculekit/distance.py'
2024-05-10T09:57:30,669   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:30,680   adding 'moleculekit/home.py'
2024-05-10T09:57:30,681   adding 'moleculekit/logging.ini'
2024-05-10T09:57:30,695   adding 'moleculekit/molecule.py'
2024-05-10T09:57:30,924   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:30,932   adding 'moleculekit/opm.py'
2024-05-10T09:57:30,935   adding 'moleculekit/periodictable.py'
2024-05-10T09:57:30,936   adding 'moleculekit/pymolgraphics.py'
2024-05-10T09:57:30,937   adding 'moleculekit/rcsb.py'
2024-05-10T09:57:30,939   adding 'moleculekit/rdkitintegration.py'
2024-05-10T09:57:30,952   adding 'moleculekit/readers.py'
2024-05-10T09:57:31,550   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:31,854   adding 'moleculekit/trr.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:31,865   adding 'moleculekit/util.py'
2024-05-10T09:57:31,866   adding 'moleculekit/version.py'
2024-05-10T09:57:31,868   adding 'moleculekit/viewer.py'
2024-05-10T09:57:31,869   adding 'moleculekit/vmd_wrapper'
2024-05-10T09:57:31,871   adding 'moleculekit/vmdgraphics.py'
2024-05-10T09:57:31,873   adding 'moleculekit/vmdviewer.py'
2024-05-10T09:57:32,127   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:32,141   adding 'moleculekit/writers.py'
2024-05-10T09:57:32,401   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:32,410   adding 'moleculekit/atomselect/__init__.py'
2024-05-10T09:57:32,412   adding 'moleculekit/atomselect/analyze.py'
2024-05-10T09:57:32,414   adding 'moleculekit/atomselect/atomselect.py'
2024-05-10T09:57:32,416   adding 'moleculekit/atomselect/languageparser.py'
2024-05-10T09:57:32,519   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-05-10T09:57:32,530   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-05-10T09:57:32,621   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-05-10T09:57:32,630   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-05-10T09:57:32,718   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-05-10T09:57:32,727   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-05-10T09:57:32,829   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-05-10T09:57:32,839   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-05-10T09:57:32,841   adding 'moleculekit/fileformats/__init__.py'
2024-05-10T09:57:32,846   adding 'moleculekit/fileformats/netcdf.py'
2024-05-10T09:57:32,848   adding 'moleculekit/fileformats/utils.py'
2024-05-10T09:57:32,908   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-05-10T09:57:32,915   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-05-10T09:57:32,917   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-05-10T09:57:32,918   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-05-10T09:57:32,919   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-05-10T09:57:32,924   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-05-10T09:57:32,927   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-05-10T09:57:32,989   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-05-10T09:57:32,997   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-05-10T09:57:32,998   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-05-10T09:57:33,000   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-05-10T09:57:33,002   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-05-10T09:57:33,003   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-05-10T09:57:33,005   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-05-10T09:57:33,010   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-05-10T09:57:33,015   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-05-10T09:57:33,109   adding 'moleculekit/fileformats/xtc/trr.c'
2024-05-10T09:57:33,120   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-05-10T09:57:33,122   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-05-10T09:57:33,123   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-05-10T09:57:33,211   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-05-10T09:57:33,219   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-05-10T09:57:33,221   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-05-10T09:57:33,223   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-05-10T09:57:33,224   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-05-10T09:57:33,226   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-05-10T09:57:33,227   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-05-10T09:57:33,229   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-05-10T09:57:33,230   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-05-10T09:57:33,232   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-05-10T09:57:33,238   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-05-10T09:57:33,240   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-05-10T09:57:33,242   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-05-10T09:57:33,244   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-05-10T09:57:33,246   adding 'moleculekit/interactions/__init__.py'
2024-05-10T09:57:33,525   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:33,790   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:33,802   adding 'moleculekit/interactions/interactions.py'
2024-05-10T09:57:34,079   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:34,362   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2024-05-10T09:57:34,461   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-05-10T09:57:34,470   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-05-10T09:57:34,561   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-05-10T09:57:34,569   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-05-10T09:57:34,661   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-05-10T09:57:34,669   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-05-10T09:57:34,760   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-05-10T09:57:34,769   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-05-10T09:57:34,856   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-05-10T09:57:34,864   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-05-10T09:57:34,865   adding 'moleculekit/pdbx/__init__.py'
2024-05-10T09:57:34,869   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-05-10T09:57:34,871   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-05-10T09:57:34,874   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-05-10T09:57:34,875   adding 'moleculekit/pdbx/reader/__init__.py'
2024-05-10T09:57:34,877   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-05-10T09:57:34,878   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-05-10T09:57:34,879   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-05-10T09:57:34,880   adding 'moleculekit/pdbx/tests/__init__.py'
2024-05-10T09:57:34,882   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-05-10T09:57:34,883   adding 'moleculekit/pdbx/writer/__init__.py'
2024-05-10T09:57:34,885   adding 'moleculekit/ply/__init__.py'
2024-05-10T09:57:34,889   adding 'moleculekit/ply/lex.py'
2024-05-10T09:57:34,900   adding 'moleculekit/ply/yacc.py'
2024-05-10T09:57:34,902   adding 'moleculekit/projections/__init__.py'
2024-05-10T09:57:34,904   adding 'moleculekit/projections/metriccoordinate.py'
2024-05-10T09:57:34,907   adding 'moleculekit/projections/metricdihedral.py'
2024-05-10T09:57:34,911   adding 'moleculekit/projections/metricdistance.py'
2024-05-10T09:57:34,913   adding 'moleculekit/projections/metricfluctuation.py'
2024-05-10T09:57:34,915   adding 'moleculekit/projections/metricgyration.py'
2024-05-10T09:57:34,919   adding 'moleculekit/projections/metricplumed2.py'
2024-05-10T09:57:34,920   adding 'moleculekit/projections/metricrmsd.py'
2024-05-10T09:57:34,922   adding 'moleculekit/projections/metricsasa.py'
2024-05-10T09:57:34,924   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-05-10T09:57:34,926   adding 'moleculekit/projections/metricshell.py'
2024-05-10T09:57:34,928   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-05-10T09:57:34,929   adding 'moleculekit/projections/metrictmscore.py'
2024-05-10T09:57:34,930   adding 'moleculekit/projections/projection.py'
2024-05-10T09:57:34,932   adding 'moleculekit/projections/util.py'
2024-05-10T09:57:34,934   adding 'moleculekit/share/ALA.cif'
2024-05-10T09:57:34,935   adding 'moleculekit/share/backbone.cif'
2024-05-10T09:57:36,232   adding 'moleculekit/share/opm_sequences.json'
2024-05-10T09:57:36,317   adding 'moleculekit/share/atomselect/atomselect.json'
2024-05-10T09:57:36,321   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-05-10T09:57:36,322   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-05-10T09:57:36,323   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-05-10T09:57:36,324   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-05-10T09:57:36,326   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-05-10T09:57:36,327   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-05-10T09:57:36,328   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-05-10T09:57:36,329   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-05-10T09:57:36,330   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-05-10T09:57:36,332   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-05-10T09:57:36,333   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-05-10T09:57:36,334   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-05-10T09:57:36,335   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-05-10T09:57:36,336   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-05-10T09:57:36,338   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-05-10T09:57:36,339   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-05-10T09:57:36,340   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-05-10T09:57:36,341   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-05-10T09:57:36,343   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-05-10T09:57:36,344   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-05-10T09:57:36,345   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-05-10T09:57:36,346   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-05-10T09:57:36,348   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-05-10T09:57:36,349   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-05-10T09:57:36,350   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-05-10T09:57:36,351   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-05-10T09:57:36,352   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-05-10T09:57:36,353   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-05-10T09:57:36,354   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-05-10T09:57:36,355   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-05-10T09:57:36,356   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-05-10T09:57:36,357   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-05-10T09:57:36,359   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-05-10T09:57:36,360   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-05-10T09:57:36,361   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-05-10T09:57:36,362   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-05-10T09:57:36,363   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-05-10T09:57:36,364   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-05-10T09:57:36,366   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-05-10T09:57:36,367   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-05-10T09:57:36,368   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-05-10T09:57:36,369   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-05-10T09:57:36,370   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-05-10T09:57:36,371   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-05-10T09:57:36,372   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-05-10T09:57:36,373   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-05-10T09:57:36,375   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-05-10T09:57:36,376   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-05-10T09:57:36,377   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-05-10T09:57:36,378   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-05-10T09:57:36,379   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-05-10T09:57:36,381   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-05-10T09:57:36,382   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-05-10T09:57:36,383   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-05-10T09:57:36,384   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-05-10T09:57:36,385   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-05-10T09:57:36,387   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-05-10T09:57:36,388   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-05-10T09:57:36,389   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-05-10T09:57:36,390   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-05-10T09:57:36,391   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-05-10T09:57:36,392   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-05-10T09:57:36,394   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-05-10T09:57:36,395   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-05-10T09:57:36,396   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-05-10T09:57:36,397   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-05-10T09:57:36,398   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-05-10T09:57:36,399   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-05-10T09:57:36,401   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-05-10T09:57:36,402   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-05-10T09:57:36,403   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-05-10T09:57:36,404   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-05-10T09:57:36,405   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-05-10T09:57:36,407   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-05-10T09:57:36,408   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-05-10T09:57:36,409   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-05-10T09:57:36,410   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-05-10T09:57:36,411   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-05-10T09:57:36,412   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-05-10T09:57:36,413   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-05-10T09:57:36,414   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-05-10T09:57:36,415   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-05-10T09:57:36,416   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-05-10T09:57:36,417   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-05-10T09:57:36,419   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-05-10T09:57:36,420   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-05-10T09:57:36,421   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-05-10T09:57:36,422   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-05-10T09:57:36,423   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-05-10T09:57:36,424   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-05-10T09:57:36,426   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-05-10T09:57:36,427   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-05-10T09:57:36,428   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-05-10T09:57:36,429   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-05-10T09:57:36,430   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-05-10T09:57:36,431   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-05-10T09:57:36,433   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-05-10T09:57:36,434   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-05-10T09:57:36,435   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-05-10T09:57:36,437   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-05-10T09:57:36,438   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-05-10T09:57:36,439   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-05-10T09:57:36,440   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-05-10T09:57:36,441   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-05-10T09:57:36,442   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-05-10T09:57:36,444   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-05-10T09:57:36,445   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-05-10T09:57:36,446   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-05-10T09:57:36,447   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-05-10T09:57:36,449   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-05-10T09:57:36,450   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-05-10T09:57:36,451   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-05-10T09:57:36,453   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-05-10T09:57:36,454   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-05-10T09:57:36,455   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-05-10T09:57:36,456   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-05-10T09:57:36,458   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-05-10T09:57:36,459   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-05-10T09:57:36,460   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-05-10T09:57:36,461   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-05-10T09:57:36,463   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-05-10T09:57:36,464   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-05-10T09:57:36,465   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-05-10T09:57:36,466   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-05-10T09:57:36,468   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-05-10T09:57:36,469   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-05-10T09:57:36,470   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-05-10T09:57:36,471   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-05-10T09:57:36,472   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-05-10T09:57:36,473   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-05-10T09:57:36,475   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-05-10T09:57:36,476   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-05-10T09:57:36,477   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-05-10T09:57:36,478   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-05-10T09:57:36,479   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-05-10T09:57:36,480   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-05-10T09:57:36,482   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-05-10T09:57:36,483   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-05-10T09:57:36,484   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-05-10T09:57:36,485   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-05-10T09:57:36,486   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-05-10T09:57:36,488   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-05-10T09:57:36,489   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-05-10T09:57:36,490   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-05-10T09:57:36,491   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-05-10T09:57:36,492   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-05-10T09:57:36,494   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-05-10T09:57:36,495   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-05-10T09:57:36,496   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-05-10T09:57:36,497   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-05-10T09:57:36,498   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-05-10T09:57:36,499   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-05-10T09:57:36,500   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-05-10T09:57:36,502   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-05-10T09:57:36,503   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-05-10T09:57:36,504   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-05-10T09:57:36,506   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-05-10T09:57:36,507   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-05-10T09:57:36,508   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-05-10T09:57:36,509   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-05-10T09:57:36,511   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-05-10T09:57:36,512   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-05-10T09:57:36,513   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-05-10T09:57:36,514   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-05-10T09:57:36,515   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-05-10T09:57:36,517   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-05-10T09:57:36,518   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-05-10T09:57:36,519   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-05-10T09:57:36,521   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-05-10T09:57:36,522   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-05-10T09:57:36,523   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-05-10T09:57:36,525   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-05-10T09:57:36,526   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-05-10T09:57:36,527   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-05-10T09:57:36,529   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-05-10T09:57:36,530   adding 'moleculekit/smallmol/__init__.py'
2024-05-10T09:57:36,536   adding 'moleculekit/smallmol/smallmol.py'
2024-05-10T09:57:36,537   adding 'moleculekit/smallmol/smallmolcdp.py'
2024-05-10T09:57:36,540   adding 'moleculekit/smallmol/smallmollib.py'
2024-05-10T09:57:36,542   adding 'moleculekit/smallmol/test_smallmol.py'
2024-05-10T09:57:36,543   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-05-10T09:57:36,545   adding 'moleculekit/smallmol/util.py'
2024-05-10T09:57:36,547   adding 'moleculekit/smallmol/tools/__init__.py'
2024-05-10T09:57:36,548   adding 'moleculekit/smallmol/tools/clustering.py'
2024-05-10T09:57:36,550   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-05-10T09:57:36,551   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-05-10T09:57:36,640   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-05-10T09:57:36,649   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-05-10T09:57:36,650   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-05-10T09:57:36,652   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-05-10T09:57:36,669   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-05-10T09:57:36,672   adding 'moleculekit/tools/__init__.py'
2024-05-10T09:57:36,674   adding 'moleculekit/tools/atomtyper.py'
2024-05-10T09:57:36,676   adding 'moleculekit/tools/autosegment.py'
2024-05-10T09:57:36,678   adding 'moleculekit/tools/crystalpacking.py'
2024-05-10T09:57:36,681   adding 'moleculekit/tools/detect.py'
2024-05-10T09:57:36,683   adding 'moleculekit/tools/docking.py'
2024-05-10T09:57:36,685   adding 'moleculekit/tools/graphalignment.py'
2024-05-10T09:57:36,687   adding 'moleculekit/tools/hhblitsprofile.py'
2024-05-10T09:57:36,688   adding 'moleculekit/tools/modelling.py'
2024-05-10T09:57:36,689   adding 'moleculekit/tools/moleculechecks.py'
2024-05-10T09:57:36,695   adding 'moleculekit/tools/preparation.py'
2024-05-10T09:57:36,698   adding 'moleculekit/tools/preparation_customres.py'
2024-05-10T09:57:36,700   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-05-10T09:57:36,703   adding 'moleculekit/tools/voxeldescriptors.py'
2024-05-10T09:57:36,705   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-05-10T09:57:36,706   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-05-10T09:57:36,797   adding 'moleculekit/wrapping/wrapping.cpp'
2024-05-10T09:57:36,806   adding 'moleculekit/wrapping/wrapping.pyx'
2024-05-10T09:57:36,808   adding 'moleculekit-1.8.32.dist-info/LICENSE'
2024-05-10T09:57:36,810   adding 'moleculekit-1.8.32.dist-info/METADATA'
2024-05-10T09:57:36,810   adding 'moleculekit-1.8.32.dist-info/WHEEL'
2024-05-10T09:57:36,811   adding 'moleculekit-1.8.32.dist-info/top_level.txt'
2024-05-10T09:57:36,816   adding 'moleculekit-1.8.32.dist-info/RECORD'
2024-05-10T09:57:36,984   removing build/bdist.linux-armv7l/wheel
2024-05-10T09:57:37,291   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-05-10T09:57:37,653   Created wheel for moleculekit: filename=moleculekit-1.8.32-cp311-cp311-linux_armv7l.whl size=15274287 sha256=1cb8ae4cdb11708fcd31f1c3de19ec4fb93bbecf44e8170e8464bc236f166efc
2024-05-10T09:57:37,654   Stored in directory: /tmp/pip-ephem-wheel-cache-05c8ym1x/wheels/61/40/e9/736e19619158999ce5cde39e1f2627ddd5fa67ebda5bfe9289
2024-05-10T09:57:37,681 Successfully built moleculekit
2024-05-10T09:57:38,031 Removed build tracker: '/tmp/pip-build-tracker-8xleusqv'