2024-05-10T11:53:29,203 Created temporary directory: /tmp/pip-build-tracker-mlpo9wa5
2024-05-10T11:53:29,204 Initialized build tracking at /tmp/pip-build-tracker-mlpo9wa5
2024-05-10T11:53:29,204 Created build tracker: /tmp/pip-build-tracker-mlpo9wa5
2024-05-10T11:53:29,205 Entered build tracker: /tmp/pip-build-tracker-mlpo9wa5
2024-05-10T11:53:29,205 Created temporary directory: /tmp/pip-wheel-p0xvlmay
2024-05-10T11:53:29,209 Created temporary directory: /tmp/pip-ephem-wheel-cache-zmmv29i7
2024-05-10T11:53:29,235 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-10T11:53:29,239 2 location(s) to search for versions of moleculekit:
2024-05-10T11:53:29,239 * https://pypi.org/simple/moleculekit/
2024-05-10T11:53:29,239 * https://www.piwheels.org/simple/moleculekit/
2024-05-10T11:53:29,239 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-05-10T11:53:29,240 Getting page https://pypi.org/simple/moleculekit/
2024-05-10T11:53:29,242 Found index url https://pypi.org/simple/
2024-05-10T11:53:29,299 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-05-10T11:53:29,342   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,342   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-05-10T11:53:29,343   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,343   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-05-10T11:53:29,343   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,343   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-05-10T11:53:29,344   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,344   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-05-10T11:53:29,344   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,344   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-05-10T11:53:29,345   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,345   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-05-10T11:53:29,345   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,345   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-05-10T11:53:29,346   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,346   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-05-10T11:53:29,346   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,346   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-05-10T11:53:29,347   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,347   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-05-10T11:53:29,347   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,347   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-05-10T11:53:29,348   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,348   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-05-10T11:53:29,348   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,348   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-05-10T11:53:29,349   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,349   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-05-10T11:53:29,349   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,349   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-05-10T11:53:29,349   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,350   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-05-10T11:53:29,350   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,350   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-05-10T11:53:29,350   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,351   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-05-10T11:53:29,351   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,351   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-05-10T11:53:29,351   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,352   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-05-10T11:53:29,352   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,352   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-05-10T11:53:29,352   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,353   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-05-10T11:53:29,353   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,353   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-05-10T11:53:29,353   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,353   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-05-10T11:53:29,354   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,354   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-05-10T11:53:29,354   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,354   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-05-10T11:53:29,355   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,355   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-05-10T11:53:29,355   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,355   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-05-10T11:53:29,356   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,356   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-05-10T11:53:29,356   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,356   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-05-10T11:53:29,356   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,357   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-05-10T11:53:29,357   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,357   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-05-10T11:53:29,357   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-05-10T11:53:29,358   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2024-05-10T11:53:29,375   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
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2024-05-10T11:53:29,376   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
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2024-05-10T11:53:29,376   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
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2024-05-10T11:53:29,377   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
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2024-05-10T11:53:29,380   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-05-10T11:53:29,380   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-05-10T11:53:29,380   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
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2024-05-10T11:53:29,381   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-05-10T11:53:29,381   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-05-10T11:53:29,381   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-05-10T11:53:29,382   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-05-10T11:53:29,382   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-05-10T11:53:29,382   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-05-10T11:53:29,382   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-05-10T11:53:29,383   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-05-10T11:53:29,383   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-05-10T11:53:29,384   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-05-10T11:53:29,384   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-05-10T11:53:29,384   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-05-10T11:53:29,384   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-05-10T11:53:29,385   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-05-10T11:53:29,385   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-05-10T11:53:29,385   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-05-10T11:53:29,385   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
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2024-05-10T11:53:29,386   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-05-10T11:53:29,386   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-05-10T11:53:29,386   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-05-10T11:53:29,387   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
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2024-05-10T11:53:29,387   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-05-10T11:53:29,388   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
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2024-05-10T11:53:29,390   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-05-10T11:53:29,390   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-05-10T11:53:29,391   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
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2024-05-10T11:53:29,393   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-05-10T11:53:29,394   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-05-10T11:53:29,394   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
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2024-05-10T11:53:29,397   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
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2024-05-10T11:53:29,400   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-05-10T11:53:29,401   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-05-10T11:53:29,401   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-05-10T11:53:29,402   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-05-10T11:53:29,402   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-05-10T11:53:29,403   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-05-10T11:53:29,403   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-05-10T11:53:29,404   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-05-10T11:53:29,404   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-05-10T11:53:29,405   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-05-10T11:53:29,406   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-05-10T11:53:29,406   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-05-10T11:53:29,407   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-05-10T11:53:29,407   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-05-10T11:53:29,408   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-05-10T11:53:29,408   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-05-10T11:53:29,409   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-05-10T11:53:29,409   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-05-10T11:53:29,410   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-05-10T11:53:29,410   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-05-10T11:53:29,411   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-05-10T11:53:29,412   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-05-10T11:53:29,412   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-05-10T11:53:29,413   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-05-10T11:53:29,413   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-05-10T11:53:29,414   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-05-10T11:53:29,414   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-05-10T11:53:29,415   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-05-10T11:53:29,415   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-05-10T11:53:29,416   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-05-10T11:53:29,417   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-05-10T11:53:29,417   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-05-10T11:53:29,418   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-05-10T11:53:29,418   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-05-10T11:53:29,419   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-05-10T11:53:29,419   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-05-10T11:53:29,420   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-05-10T11:53:29,421   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-05-10T11:53:29,421   Found link https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.31
2024-05-10T11:53:29,422   Found link https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.32
2024-05-10T11:53:29,422 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-05-10T11:53:29,422 Getting page https://www.piwheels.org/simple/moleculekit/
2024-05-10T11:53:29,423 Found index url https://www.piwheels.org/simple/
2024-05-10T11:53:29,527 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-05-10T11:53:29,624   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp311-cp311-linux_armv6l.whl#sha256=1cb8ae4cdb11708fcd31f1c3de19ec4fb93bbecf44e8170e8464bc236f166efc (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,624   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.32-cp311-cp311-linux_armv7l.whl#sha256=1cb8ae4cdb11708fcd31f1c3de19ec4fb93bbecf44e8170e8464bc236f166efc (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,624   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp311-cp311-linux_armv6l.whl#sha256=218f8197ef61b4d204fdf063e6c7161b0c1cada6b9072a80ed32467b83651997 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,624   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp311-cp311-linux_armv7l.whl#sha256=218f8197ef61b4d204fdf063e6c7161b0c1cada6b9072a80ed32467b83651997 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,625   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp39-cp39-linux_armv6l.whl#sha256=0f5cd707ec1b6d1a5e86c8fb1763866bc13d430d94662be1dfa4d74044bfe743 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,625   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.31-cp39-cp39-linux_armv7l.whl#sha256=0f5cd707ec1b6d1a5e86c8fb1763866bc13d430d94662be1dfa4d74044bfe743 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,625   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp311-cp311-linux_armv6l.whl#sha256=ba84e1392124eb438846b78998fb0f26e8d9942c644dd5574f49d9eb9b0f6a87 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,625   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp311-cp311-linux_armv7l.whl#sha256=ba84e1392124eb438846b78998fb0f26e8d9942c644dd5574f49d9eb9b0f6a87 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,625   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp39-cp39-linux_armv6l.whl#sha256=44fb6340ac1ed849bf5c52a43b7b0334c3869777bcdec4444fc6ac0303a7d18b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,626   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.29-cp39-cp39-linux_armv7l.whl#sha256=44fb6340ac1ed849bf5c52a43b7b0334c3869777bcdec4444fc6ac0303a7d18b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,626   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv6l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,626   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv7l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,626   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv6l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,626   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv7l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,627   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv6l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,627   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv7l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,627   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp39-cp39-linux_armv6l.whl#sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,627   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp39-cp39-linux_armv7l.whl#sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,627   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv6l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-05-10T11:53:29,628   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv7l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-05-10T11:53:29,669   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T11:53:29,670   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T11:53:29,670   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T11:53:29,671   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T11:53:29,671   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T11:53:29,671   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,671   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,672   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,672   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T11:53:29,673   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T11:53:29,673   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T11:53:29,674   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T11:53:29,674   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,674   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,674   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,674   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,675   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,675   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,675   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,675   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,675   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,676   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,676   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,676   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,676   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,676   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,677   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,677   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,677   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,677   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,677   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,678   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,678   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,678   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,678   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,678   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,678   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,679   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,679   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,679   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,679   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,679   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,680   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,680   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,680   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,680   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,680   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,681   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,681   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,681   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,681   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,681   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,682   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,682   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,682   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,682   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,682   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,683   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,683   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,683   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,683   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,683   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,684   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,684   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,684   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,684   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,684   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,684   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-05-10T11:53:29,685   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
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2024-05-10T11:53:29,695 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-05-10T11:53:29,695 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-05-10T11:53:29,740 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-05-10T11:53:29,758 Collecting moleculekit==1.8.32
2024-05-10T11:53:29,760   Created temporary directory: /tmp/pip-unpack-r8ie317v
2024-05-10T11:53:29,803   Downloading moleculekit-1.8.32.tar.gz (6.8 MB)
2024-05-10T11:53:32,039   Added moleculekit==1.8.32 from https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz to build tracker '/tmp/pip-build-tracker-mlpo9wa5'
2024-05-10T11:53:32,048   Created temporary directory: /tmp/pip-build-env-ffgqyra7
2024-05-10T11:53:32,058   Installing build dependencies: started
2024-05-10T11:53:32,059   Running command pip subprocess to install build dependencies
2024-05-10T11:53:33,213   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-05-10T11:53:33,727   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-10T11:53:35,289   Collecting setuptools
2024-05-10T11:53:35,310     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB)
2024-05-10T11:53:36,367   Collecting numpy>=1.18.5
2024-05-10T11:53:36,397     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB)
2024-05-10T11:53:38,003   Collecting Cython>=0.29.21
2024-05-10T11:53:38,032     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-05-10T11:53:38,421   Collecting toml
2024-05-10T11:53:38,441     Downloading https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-05-10T11:53:38,563   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-05-10T11:53:38,583     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-05-10T11:53:38,715   Collecting tomli (from versioneer[toml]==0.28)
2024-05-10T11:53:38,735     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-05-10T11:53:40,600   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-05-10T11:53:40,638     Creating /tmp/pip-build-env-ffgqyra7/overlay/bin
2024-05-10T11:53:40,640     changing mode of /tmp/pip-build-env-ffgqyra7/overlay/bin/versioneer to 755
2024-05-10T11:53:53,915     changing mode of /tmp/pip-build-env-ffgqyra7/overlay/bin/f2py to 755
2024-05-10T11:53:57,378     changing mode of /tmp/pip-build-env-ffgqyra7/overlay/bin/cygdb to 755
2024-05-10T11:53:57,381     changing mode of /tmp/pip-build-env-ffgqyra7/overlay/bin/cython to 755
2024-05-10T11:53:57,384     changing mode of /tmp/pip-build-env-ffgqyra7/overlay/bin/cythonize to 755
2024-05-10T11:53:57,409   Successfully installed Cython-3.0.10 numpy-1.26.4 setuptools-69.5.1 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2024-05-10T11:53:58,082   Installing build dependencies: finished with status 'done'
2024-05-10T11:53:58,087   Getting requirements to build wheel: started
2024-05-10T11:53:58,088   Running command Getting requirements to build wheel
2024-05-10T11:54:36,657   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-05-10T11:54:45,638   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T11:54:45,638   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T11:54:45,638   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T11:54:45,638   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T11:54:45,639   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T11:54:45,639   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T11:54:45,639   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T11:54:45,639   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T11:54:45,639   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T11:54:45,639   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-05-10T11:54:45,639   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-05-10T11:54:45,639   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-05-10T11:54:45,640   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-05-10T11:54:45,640   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-05-10T11:54:45,640   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
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2024-05-10T11:54:45,941   running egg_info
2024-05-10T11:54:45,948   writing moleculekit.egg-info/PKG-INFO
2024-05-10T11:54:45,951   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-05-10T11:54:45,954   writing requirements to moleculekit.egg-info/requires.txt
2024-05-10T11:54:45,956   writing top-level names to moleculekit.egg-info/top_level.txt
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2024-05-10T11:54:45,992   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:45,992   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T11:54:45,995   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:45,995   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T11:54:45,996   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:45,996   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:45,997   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:45,997   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:45,997   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:45,998   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T11:54:45,998   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:45,999   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:45,999   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:45,999   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,000   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,000   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,000   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,001   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,001   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,001   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,002   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,002   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,002   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,003   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,003   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,003   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,004   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,004   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,004   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-05-10T11:54:46,012   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:46,023   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-05-10T11:54:46,057   reading manifest template 'MANIFEST.in'
2024-05-10T11:54:46,320   no previously-included directories found matching 'moleculekit/test-data'
2024-05-10T11:54:46,321   no previously-included directories found matching 'moleculekit/tests'
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2024-05-10T11:54:46,322   adding license file 'LICENSE'
2024-05-10T11:54:46,341   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-05-10T11:54:47,720   Getting requirements to build wheel: finished with status 'done'
2024-05-10T11:54:47,735   Installing backend dependencies: started
2024-05-10T11:54:47,736   Running command pip subprocess to install backend dependencies
2024-05-10T11:54:48,976   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-05-10T11:54:49,529   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-10T11:54:49,924   Collecting wheel
2024-05-10T11:54:49,943     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-05-10T11:54:51,399   Installing collected packages: wheel
2024-05-10T11:54:51,623     Creating /tmp/pip-build-env-ffgqyra7/normal/bin
2024-05-10T11:54:51,625     changing mode of /tmp/pip-build-env-ffgqyra7/normal/bin/wheel to 755
2024-05-10T11:54:51,637   Successfully installed wheel-0.43.0
2024-05-10T11:54:52,021   Installing backend dependencies: finished with status 'done'
2024-05-10T11:54:52,023   Created temporary directory: /tmp/pip-modern-metadata-l4b1wct9
2024-05-10T11:54:52,026   Preparing metadata (pyproject.toml): started
2024-05-10T11:54:52,027   Running command Preparing metadata (pyproject.toml)
2024-05-10T11:54:54,531   running dist_info
2024-05-10T11:54:54,533   creating /tmp/pip-modern-metadata-l4b1wct9/moleculekit.egg-info
2024-05-10T11:54:54,539   writing /tmp/pip-modern-metadata-l4b1wct9/moleculekit.egg-info/PKG-INFO
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2024-05-10T11:54:54,578   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,579   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,579   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,579   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,579   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,579   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,579   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,579   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,580   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,580   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,580   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,580   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,580   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,580   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,580   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,580   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,581   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,581   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,581   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,581   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,581   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,581   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,581   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,582   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,582   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,582   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,582   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,582   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,582   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,582   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,582   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,583   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,583   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,583   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,583   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,583   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,583   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,583   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,583   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,584   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,584   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,584   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,584   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,584   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,584   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,584   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,584   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,585   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,585   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,585   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,585   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,585   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,585   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,585   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,585   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,586   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,586   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,586   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,586   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,586   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,588   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,588   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,588   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,588   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,588   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,589   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,589   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,589   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,589   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,589   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,590   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,590   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,590   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,591   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,591   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:54,599   reading manifest file '/tmp/pip-modern-metadata-l4b1wct9/moleculekit.egg-info/SOURCES.txt'
2024-05-10T11:54:54,601   reading manifest template 'MANIFEST.in'
2024-05-10T11:54:54,874   no previously-included directories found matching 'moleculekit/test-data'
2024-05-10T11:54:54,875   no previously-included directories found matching 'moleculekit/tests'
2024-05-10T11:54:54,876   no previously-included directories found matching 'package'
2024-05-10T11:54:54,876   adding license file 'LICENSE'
2024-05-10T11:54:54,889   writing manifest file '/tmp/pip-modern-metadata-l4b1wct9/moleculekit.egg-info/SOURCES.txt'
2024-05-10T11:54:54,898   creating '/tmp/pip-modern-metadata-l4b1wct9/moleculekit-1.8.32.dist-info'
2024-05-10T11:54:55,102   Preparing metadata (pyproject.toml): finished with status 'done'
2024-05-10T11:54:55,108   Source in /tmp/pip-wheel-p0xvlmay/moleculekit_ca577d5a4c3041ce86a2c14fc965fad5 has version 1.8.32, which satisfies requirement moleculekit==1.8.32 from https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz
2024-05-10T11:54:55,109   Removed moleculekit==1.8.32 from https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz from build tracker '/tmp/pip-build-tracker-mlpo9wa5'
2024-05-10T11:54:55,115 Created temporary directory: /tmp/pip-unpack-m2n4515i
2024-05-10T11:54:55,116 Created temporary directory: /tmp/pip-unpack-5gyg9y29
2024-05-10T11:54:55,124 Building wheels for collected packages: moleculekit
2024-05-10T11:54:55,129   Created temporary directory: /tmp/pip-wheel-cngdb13a
2024-05-10T11:54:55,129   Destination directory: /tmp/pip-wheel-cngdb13a
2024-05-10T11:54:55,131   Building wheel for moleculekit (pyproject.toml): started
2024-05-10T11:54:55,132   Running command Building wheel for moleculekit (pyproject.toml)
2024-05-10T11:54:57,486   running bdist_wheel
2024-05-10T11:54:57,503   running build
2024-05-10T11:54:57,503   running build_py
2024-05-10T11:54:57,511   creating build
2024-05-10T11:54:57,512   creating build/lib.linux-armv7l-cpython-39
2024-05-10T11:54:57,513   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,514   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,516   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,518   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,522   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,524   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,527   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,529   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,531   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,537   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,539   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,541   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,543   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,545   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,547   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,549   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,550   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,552   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,556   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,558   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,560   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,562   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:57,565   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-05-10T11:54:57,566   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-05-10T11:54:57,571   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-05-10T11:54:57,574   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-05-10T11:54:57,577   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-05-10T11:54:57,578   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-05-10T11:54:57,580   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-05-10T11:54:57,583   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-05-10T11:54:57,586   copying moleculekit/smallmol/smallmolcdp.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-05-10T11:54:57,588   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-05-10T11:54:57,590   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-05-10T11:54:57,593   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-05-10T11:54:57,595   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-05-10T11:54:57,596   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-05-10T11:54:57,598   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-05-10T11:54:57,600   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-05-10T11:54:57,602   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-05-10T11:54:57,605   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-05-10T11:54:57,605   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-05-10T11:54:57,608   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-05-10T11:54:57,611   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-05-10T11:54:57,613   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-05-10T11:54:57,614   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-05-10T11:54:57,617   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-05-10T11:54:57,620   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,620   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,623   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,625   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,627   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,629   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,632   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,634   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,636   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,639   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,642   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,644   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,646   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,649   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,651   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-05-10T11:54:57,653   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-05-10T11:54:57,654   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-05-10T11:54:57,657   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,657   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,660   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,663   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,665   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,667   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,669   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,672   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,675   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,677   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,679   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,681   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,684   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,686   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,688   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,691   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-05-10T11:54:57,693   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-05-10T11:54:57,694   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-05-10T11:54:57,696   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-05-10T11:54:57,698   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-05-10T11:54:57,700   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-05-10T11:54:57,703   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-05-10T11:54:57,703   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-05-10T11:54:57,706   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-05-10T11:54:57,708   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-05-10T11:54:57,709   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-05-10T11:54:57,711   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-05-10T11:54:57,713   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-05-10T11:54:57,715   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-05-10T11:54:57,717   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-05-10T11:54:57,718   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-05-10T11:54:57,721   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-05-10T11:54:57,723   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-05-10T11:54:57,723   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-05-10T11:54:57,726   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-05-10T11:54:57,729   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-05-10T11:54:57,731   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-05-10T11:54:57,733   running egg_info
2024-05-10T11:54:57,738   writing moleculekit.egg-info/PKG-INFO
2024-05-10T11:54:57,741   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-05-10T11:54:57,743   writing requirements to moleculekit.egg-info/requires.txt
2024-05-10T11:54:57,744   writing top-level names to moleculekit.egg-info/top_level.txt
2024-05-10T11:54:57,763   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,763   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,763   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,763   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,763   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,764   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,764   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,764   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,764   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,764   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,764   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,764   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,765   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,765   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,765   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,765   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,765   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,765   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,765   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,765   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,766   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,766   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,766   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,766   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,766   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,766   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,766   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,767   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,767   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,767   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,767   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,767   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,767   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,767   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,768   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,768   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,768   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,768   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,768   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,768   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,768   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,768   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,768   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,769   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,769   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,769   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,769   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,769   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,769   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,769   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,769   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,770   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,770   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,770   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,770   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,770   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,770   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,770   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,771   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,771   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,775   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,775   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,775   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,775   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,775   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,776   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,776   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,776   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,776   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,776   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,777   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,777   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,777   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,778   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,778   dependency /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-05-10T11:54:57,784   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-05-10T11:54:57,794   reading manifest template 'MANIFEST.in'
2024-05-10T11:54:58,051   no previously-included directories found matching 'moleculekit/test-data'
2024-05-10T11:54:58,052   no previously-included directories found matching 'moleculekit/tests'
2024-05-10T11:54:58,053   no previously-included directories found matching 'package'
2024-05-10T11:54:58,054   adding license file 'LICENSE'
2024-05-10T11:54:58,072   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-05-10T11:54:58,083   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-05-10T11:54:58,083   !!

2024-05-10T11:54:58,083           ********************************************************************************
2024-05-10T11:54:58,083           ############################
2024-05-10T11:54:58,084           # Package would be ignored #
2024-05-10T11:54:58,084           ############################
2024-05-10T11:54:58,084           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-05-10T11:54:58,084           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,084           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,084           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-05-10T11:54:58,084           to the `packages` configuration field.

2024-05-10T11:54:58,085           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,085           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,085           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,085           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,085           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,086           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-05-10T11:54:58,086           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-05-10T11:54:58,086           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,086           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,086           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,086           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,086           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,087           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,087                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,087                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,087                 directory, all directories are treated like packages.
2024-05-10T11:54:58,087           ********************************************************************************

2024-05-10T11:54:58,088   !!
2024-05-10T11:54:58,088     check.warn(importable)
2024-05-10T11:54:58,088   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-05-10T11:54:58,088   !!

2024-05-10T11:54:58,088           ********************************************************************************
2024-05-10T11:54:58,088           ############################
2024-05-10T11:54:58,088           # Package would be ignored #
2024-05-10T11:54:58,089           ############################
2024-05-10T11:54:58,089           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-05-10T11:54:58,089           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,089           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,089           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-05-10T11:54:58,089           to the `packages` configuration field.

2024-05-10T11:54:58,089           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,090           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,090           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,090           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,090           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,090           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-05-10T11:54:58,090           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-05-10T11:54:58,091           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,091           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,091           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,091           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,091           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,092           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,092                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,092                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,092                 directory, all directories are treated like packages.
2024-05-10T11:54:58,092           ********************************************************************************

2024-05-10T11:54:58,092   !!
2024-05-10T11:54:58,092     check.warn(importable)
2024-05-10T11:54:58,093   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-05-10T11:54:58,093   !!

2024-05-10T11:54:58,093           ********************************************************************************
2024-05-10T11:54:58,093           ############################
2024-05-10T11:54:58,093           # Package would be ignored #
2024-05-10T11:54:58,093           ############################
2024-05-10T11:54:58,093           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-05-10T11:54:58,093           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,094           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,094           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-05-10T11:54:58,094           to the `packages` configuration field.

2024-05-10T11:54:58,094           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,094           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,094           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,095           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,095           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,095           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-05-10T11:54:58,095           already explicitly excluding 'moleculekit.cython_utils' via
2024-05-10T11:54:58,095           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,095           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,095           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,096           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,096           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,096           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,096                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,096                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,096                 directory, all directories are treated like packages.
2024-05-10T11:54:58,097           ********************************************************************************

2024-05-10T11:54:58,097   !!
2024-05-10T11:54:58,097     check.warn(importable)
2024-05-10T11:54:58,097   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-05-10T11:54:58,097   !!

2024-05-10T11:54:58,097           ********************************************************************************
2024-05-10T11:54:58,097           ############################
2024-05-10T11:54:58,097           # Package would be ignored #
2024-05-10T11:54:58,098           ############################
2024-05-10T11:54:58,098           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-05-10T11:54:58,098           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,098           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,098           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-05-10T11:54:58,098           to the `packages` configuration field.

2024-05-10T11:54:58,098           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,099           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,099           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,099           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,099           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,099           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-05-10T11:54:58,099           already explicitly excluding 'moleculekit.distance_utils' via
2024-05-10T11:54:58,099           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,100           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,100           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,100           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,100           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,100           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,101                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,101                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,101                 directory, all directories are treated like packages.
2024-05-10T11:54:58,101           ********************************************************************************

2024-05-10T11:54:58,101   !!
2024-05-10T11:54:58,101     check.warn(importable)
2024-05-10T11:54:58,101   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-05-10T11:54:58,101   !!

2024-05-10T11:54:58,102           ********************************************************************************
2024-05-10T11:54:58,102           ############################
2024-05-10T11:54:58,102           # Package would be ignored #
2024-05-10T11:54:58,102           ############################
2024-05-10T11:54:58,102           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-05-10T11:54:58,102           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,102           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,102           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-05-10T11:54:58,102           to the `packages` configuration field.

2024-05-10T11:54:58,103           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,103           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,103           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,103           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,103           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,104           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-05-10T11:54:58,104           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-05-10T11:54:58,104           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,104           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,104           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,104           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,104           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,105           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,105                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,105                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,105                 directory, all directories are treated like packages.
2024-05-10T11:54:58,105           ********************************************************************************

2024-05-10T11:54:58,105   !!
2024-05-10T11:54:58,106     check.warn(importable)
2024-05-10T11:54:58,106   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-05-10T11:54:58,106   !!

2024-05-10T11:54:58,106           ********************************************************************************
2024-05-10T11:54:58,106           ############################
2024-05-10T11:54:58,106           # Package would be ignored #
2024-05-10T11:54:58,106           ############################
2024-05-10T11:54:58,106           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-05-10T11:54:58,107           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,107           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,107           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-05-10T11:54:58,107           to the `packages` configuration field.

2024-05-10T11:54:58,107           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,107           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,107           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,108           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,108           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,108           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-05-10T11:54:58,108           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-05-10T11:54:58,108           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,108           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,109           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,109           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,109           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,109           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,109                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,109                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,110                 directory, all directories are treated like packages.
2024-05-10T11:54:58,110           ********************************************************************************

2024-05-10T11:54:58,110   !!
2024-05-10T11:54:58,110     check.warn(importable)
2024-05-10T11:54:58,110   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-05-10T11:54:58,110   !!

2024-05-10T11:54:58,110           ********************************************************************************
2024-05-10T11:54:58,111           ############################
2024-05-10T11:54:58,111           # Package would be ignored #
2024-05-10T11:54:58,111           ############################
2024-05-10T11:54:58,111           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-05-10T11:54:58,111           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,111           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,111           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-05-10T11:54:58,111           to the `packages` configuration field.

2024-05-10T11:54:58,112           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,112           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,112           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,112           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,112           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,113           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-05-10T11:54:58,113           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-05-10T11:54:58,113           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,113           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,113           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,113           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,113           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,114           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,114                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,114                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,114                 directory, all directories are treated like packages.
2024-05-10T11:54:58,114           ********************************************************************************

2024-05-10T11:54:58,114   !!
2024-05-10T11:54:58,114     check.warn(importable)
2024-05-10T11:54:58,115   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-05-10T11:54:58,115   !!

2024-05-10T11:54:58,115           ********************************************************************************
2024-05-10T11:54:58,115           ############################
2024-05-10T11:54:58,115           # Package would be ignored #
2024-05-10T11:54:58,115           ############################
2024-05-10T11:54:58,115           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-05-10T11:54:58,115           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,116           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,116           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-05-10T11:54:58,116           to the `packages` configuration field.

2024-05-10T11:54:58,116           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,116           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,116           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,117           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,117           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,117           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-05-10T11:54:58,117           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-05-10T11:54:58,117           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,117           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,117           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,118           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,118           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,118           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,118                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,118                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,119                 directory, all directories are treated like packages.
2024-05-10T11:54:58,119           ********************************************************************************

2024-05-10T11:54:58,119   !!
2024-05-10T11:54:58,119     check.warn(importable)
2024-05-10T11:54:58,119   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-05-10T11:54:58,119   !!

2024-05-10T11:54:58,119           ********************************************************************************
2024-05-10T11:54:58,120           ############################
2024-05-10T11:54:58,120           # Package would be ignored #
2024-05-10T11:54:58,120           ############################
2024-05-10T11:54:58,120           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-05-10T11:54:58,120           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,120           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,120           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-05-10T11:54:58,120           to the `packages` configuration field.

2024-05-10T11:54:58,121           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,121           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,121           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,121           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,121           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,121           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-05-10T11:54:58,122           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-05-10T11:54:58,122           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,122           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,122           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,122           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,122           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,123           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,123                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,123                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,123                 directory, all directories are treated like packages.
2024-05-10T11:54:58,123           ********************************************************************************

2024-05-10T11:54:58,123   !!
2024-05-10T11:54:58,124     check.warn(importable)
2024-05-10T11:54:58,124   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-05-10T11:54:58,124   !!

2024-05-10T11:54:58,124           ********************************************************************************
2024-05-10T11:54:58,124           ############################
2024-05-10T11:54:58,124           # Package would be ignored #
2024-05-10T11:54:58,124           ############################
2024-05-10T11:54:58,125           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-05-10T11:54:58,125           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,125           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,125           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-05-10T11:54:58,125           to the `packages` configuration field.

2024-05-10T11:54:58,125           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,125           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,125           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,126           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,126           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,126           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-05-10T11:54:58,126           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-05-10T11:54:58,126           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,126           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,127           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,127           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,127           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,127           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,127                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,128                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,128                 directory, all directories are treated like packages.
2024-05-10T11:54:58,128           ********************************************************************************

2024-05-10T11:54:58,128   !!
2024-05-10T11:54:58,128     check.warn(importable)
2024-05-10T11:54:58,128   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-05-10T11:54:58,128   !!

2024-05-10T11:54:58,129           ********************************************************************************
2024-05-10T11:54:58,129           ############################
2024-05-10T11:54:58,129           # Package would be ignored #
2024-05-10T11:54:58,129           ############################
2024-05-10T11:54:58,129           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-05-10T11:54:58,129           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,129           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,129           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-05-10T11:54:58,129           to the `packages` configuration field.

2024-05-10T11:54:58,130           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,130           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,130           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,130           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,130           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,131           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-05-10T11:54:58,131           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-05-10T11:54:58,131           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,131           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,131           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,131           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,131           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,132           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,132                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,132                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,132                 directory, all directories are treated like packages.
2024-05-10T11:54:58,132           ********************************************************************************

2024-05-10T11:54:58,132   !!
2024-05-10T11:54:58,132     check.warn(importable)
2024-05-10T11:54:58,133   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-05-10T11:54:58,133   !!

2024-05-10T11:54:58,133           ********************************************************************************
2024-05-10T11:54:58,133           ############################
2024-05-10T11:54:58,133           # Package would be ignored #
2024-05-10T11:54:58,133           ############################
2024-05-10T11:54:58,133           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-05-10T11:54:58,133           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,134           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,134           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-05-10T11:54:58,134           to the `packages` configuration field.

2024-05-10T11:54:58,134           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,134           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,134           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,134           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,135           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,135           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-05-10T11:54:58,135           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-05-10T11:54:58,135           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,135           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,135           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,136           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,136           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,136           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,136                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,136                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,136                 directory, all directories are treated like packages.
2024-05-10T11:54:58,137           ********************************************************************************

2024-05-10T11:54:58,137   !!
2024-05-10T11:54:58,137     check.warn(importable)
2024-05-10T11:54:58,137   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-05-10T11:54:58,137   !!

2024-05-10T11:54:58,137           ********************************************************************************
2024-05-10T11:54:58,137           ############################
2024-05-10T11:54:58,138           # Package would be ignored #
2024-05-10T11:54:58,138           ############################
2024-05-10T11:54:58,138           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-05-10T11:54:58,138           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,138           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,138           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-05-10T11:54:58,138           to the `packages` configuration field.

2024-05-10T11:54:58,139           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,139           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,139           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,139           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,139           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,140           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-05-10T11:54:58,140           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-05-10T11:54:58,140           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,140           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,140           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,140           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,141           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,141           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,141                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,141                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,141                 directory, all directories are treated like packages.
2024-05-10T11:54:58,141           ********************************************************************************

2024-05-10T11:54:58,142   !!
2024-05-10T11:54:58,142     check.warn(importable)
2024-05-10T11:54:58,142   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-05-10T11:54:58,142   !!

2024-05-10T11:54:58,142           ********************************************************************************
2024-05-10T11:54:58,142           ############################
2024-05-10T11:54:58,142           # Package would be ignored #
2024-05-10T11:54:58,142           ############################
2024-05-10T11:54:58,143           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-05-10T11:54:58,143           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,143           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,143           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-05-10T11:54:58,143           to the `packages` configuration field.

2024-05-10T11:54:58,143           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,143           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,144           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,144           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,144           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,144           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-05-10T11:54:58,144           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-05-10T11:54:58,145           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,145           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,145           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,145           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,145           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,146           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,146                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,146                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,146                 directory, all directories are treated like packages.
2024-05-10T11:54:58,146           ********************************************************************************

2024-05-10T11:54:58,146   !!
2024-05-10T11:54:58,146     check.warn(importable)
2024-05-10T11:54:58,147   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-05-10T11:54:58,147   !!

2024-05-10T11:54:58,147           ********************************************************************************
2024-05-10T11:54:58,147           ############################
2024-05-10T11:54:58,147           # Package would be ignored #
2024-05-10T11:54:58,147           ############################
2024-05-10T11:54:58,148           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-05-10T11:54:58,148           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,148           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,148           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-05-10T11:54:58,148           to the `packages` configuration field.

2024-05-10T11:54:58,148           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,149           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,149           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,149           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,149           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,149           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-05-10T11:54:58,150           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-05-10T11:54:58,150           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,150           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,150           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,150           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,150           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,151           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,151                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,151                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,151                 directory, all directories are treated like packages.
2024-05-10T11:54:58,151           ********************************************************************************

2024-05-10T11:54:58,151   !!
2024-05-10T11:54:58,152     check.warn(importable)
2024-05-10T11:54:58,152   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-05-10T11:54:58,152   !!

2024-05-10T11:54:58,152           ********************************************************************************
2024-05-10T11:54:58,152           ############################
2024-05-10T11:54:58,152           # Package would be ignored #
2024-05-10T11:54:58,152           ############################
2024-05-10T11:54:58,153           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-05-10T11:54:58,153           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,153           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,153           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-05-10T11:54:58,153           to the `packages` configuration field.

2024-05-10T11:54:58,154           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,154           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,154           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,154           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,155           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,155           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-05-10T11:54:58,155           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-05-10T11:54:58,155           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,155           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,156           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,156           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,156           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,157           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,157                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,157                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,157                 directory, all directories are treated like packages.
2024-05-10T11:54:58,157           ********************************************************************************

2024-05-10T11:54:58,158   !!
2024-05-10T11:54:58,158     check.warn(importable)
2024-05-10T11:54:58,158   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-05-10T11:54:58,158   !!

2024-05-10T11:54:58,159           ********************************************************************************
2024-05-10T11:54:58,159           ############################
2024-05-10T11:54:58,159           # Package would be ignored #
2024-05-10T11:54:58,159           ############################
2024-05-10T11:54:58,159           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-05-10T11:54:58,159           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,160           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,160           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-05-10T11:54:58,160           to the `packages` configuration field.

2024-05-10T11:54:58,161           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,161           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,161           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,161           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,162           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,162           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-05-10T11:54:58,164           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-05-10T11:54:58,165           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,165           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,166           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,167           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,169           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,171           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,172                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,172                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,173                 directory, all directories are treated like packages.
2024-05-10T11:54:58,174           ********************************************************************************

2024-05-10T11:54:58,175   !!
2024-05-10T11:54:58,176     check.warn(importable)
2024-05-10T11:54:58,177   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-05-10T11:54:58,177   !!

2024-05-10T11:54:58,179           ********************************************************************************
2024-05-10T11:54:58,180           ############################
2024-05-10T11:54:58,180           # Package would be ignored #
2024-05-10T11:54:58,180           ############################
2024-05-10T11:54:58,180           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-05-10T11:54:58,180           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,181           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,181           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-05-10T11:54:58,181           to the `packages` configuration field.

2024-05-10T11:54:58,182           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,182           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,182           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,182           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,183           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,183           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-05-10T11:54:58,183           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-05-10T11:54:58,184           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,184           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,184           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,185           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,185           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,186           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,186                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,186                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,187                 directory, all directories are treated like packages.
2024-05-10T11:54:58,187           ********************************************************************************

2024-05-10T11:54:58,187   !!
2024-05-10T11:54:58,188     check.warn(importable)
2024-05-10T11:54:58,188   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-05-10T11:54:58,188   !!

2024-05-10T11:54:58,188           ********************************************************************************
2024-05-10T11:54:58,189           ############################
2024-05-10T11:54:58,189           # Package would be ignored #
2024-05-10T11:54:58,189           ############################
2024-05-10T11:54:58,189           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-05-10T11:54:58,190           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,190           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,190           package, please make sure that 'moleculekit.share' is explicitly added
2024-05-10T11:54:58,190           to the `packages` configuration field.

2024-05-10T11:54:58,191           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,191           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,191           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,191           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,192           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,192           If you don't want 'moleculekit.share' to be distributed and are
2024-05-10T11:54:58,192           already explicitly excluding 'moleculekit.share' via
2024-05-10T11:54:58,192           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,192           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,193           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,193           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,193           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,194           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,194                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,194                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,194                 directory, all directories are treated like packages.
2024-05-10T11:54:58,194           ********************************************************************************

2024-05-10T11:54:58,195   !!
2024-05-10T11:54:58,195     check.warn(importable)
2024-05-10T11:54:58,195   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-05-10T11:54:58,195   !!

2024-05-10T11:54:58,196           ********************************************************************************
2024-05-10T11:54:58,196           ############################
2024-05-10T11:54:58,196           # Package would be ignored #
2024-05-10T11:54:58,196           ############################
2024-05-10T11:54:58,197           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-05-10T11:54:58,197           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,198           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,199           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-05-10T11:54:58,199           to the `packages` configuration field.

2024-05-10T11:54:58,200           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,200           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,201           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,201           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,202           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,203           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-05-10T11:54:58,203           already explicitly excluding 'moleculekit.share.atomselect' via
2024-05-10T11:54:58,204           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,204           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,204           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,205           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,206           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,207           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,208                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,208                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,208                 directory, all directories are treated like packages.
2024-05-10T11:54:58,209           ********************************************************************************

2024-05-10T11:54:58,210   !!
2024-05-10T11:54:58,210     check.warn(importable)
2024-05-10T11:54:58,210   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-05-10T11:54:58,211   !!

2024-05-10T11:54:58,212           ********************************************************************************
2024-05-10T11:54:58,212           ############################
2024-05-10T11:54:58,212           # Package would be ignored #
2024-05-10T11:54:58,213           ############################
2024-05-10T11:54:58,213           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-05-10T11:54:58,214           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,215           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,215           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-05-10T11:54:58,215           to the `packages` configuration field.

2024-05-10T11:54:58,216           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,216           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,217           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,217           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,218           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,218           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-05-10T11:54:58,219           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-05-10T11:54:58,219           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,220           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,220           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,221           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,222           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,224           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,224                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,225                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,225                 directory, all directories are treated like packages.
2024-05-10T11:54:58,225           ********************************************************************************

2024-05-10T11:54:58,226   !!
2024-05-10T11:54:58,226     check.warn(importable)
2024-05-10T11:54:58,226   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-05-10T11:54:58,226   !!

2024-05-10T11:54:58,227           ********************************************************************************
2024-05-10T11:54:58,227           ############################
2024-05-10T11:54:58,227           # Package would be ignored #
2024-05-10T11:54:58,227           ############################
2024-05-10T11:54:58,227           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-05-10T11:54:58,227           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,228           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,228           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-05-10T11:54:58,228           to the `packages` configuration field.

2024-05-10T11:54:58,229           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,229           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,229           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,230           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,230           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,230           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-05-10T11:54:58,231           already explicitly excluding 'moleculekit.tmalign' via
2024-05-10T11:54:58,231           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,231           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,232           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,232           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,232           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,233           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,233                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,233                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,234                 directory, all directories are treated like packages.
2024-05-10T11:54:58,234           ********************************************************************************

2024-05-10T11:54:58,234   !!
2024-05-10T11:54:58,235     check.warn(importable)
2024-05-10T11:54:58,235   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-05-10T11:54:58,235   !!

2024-05-10T11:54:58,235           ********************************************************************************
2024-05-10T11:54:58,235           ############################
2024-05-10T11:54:58,236           # Package would be ignored #
2024-05-10T11:54:58,236           ############################
2024-05-10T11:54:58,236           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-05-10T11:54:58,236           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,237           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,237           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-05-10T11:54:58,237           to the `packages` configuration field.

2024-05-10T11:54:58,237           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,237           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,238           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,238           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,238           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,239           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-05-10T11:54:58,239           already explicitly excluding 'moleculekit.tmalign.include' via
2024-05-10T11:54:58,239           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,239           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,239           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,240           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,240           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,240           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,241                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,241                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,241                 directory, all directories are treated like packages.
2024-05-10T11:54:58,241           ********************************************************************************

2024-05-10T11:54:58,242   !!
2024-05-10T11:54:58,242     check.warn(importable)
2024-05-10T11:54:58,242   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-05-10T11:54:58,243   !!

2024-05-10T11:54:58,243           ********************************************************************************
2024-05-10T11:54:58,244           ############################
2024-05-10T11:54:58,244           # Package would be ignored #
2024-05-10T11:54:58,245           ############################
2024-05-10T11:54:58,245           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-05-10T11:54:58,245           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,246           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,247           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-05-10T11:54:58,247           to the `packages` configuration field.

2024-05-10T11:54:58,248           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,248           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,249           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,249           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,250           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,251           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-05-10T11:54:58,251           already explicitly excluding 'moleculekit.tmalign.src' via
2024-05-10T11:54:58,252           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,252           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,253           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,253           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,254           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,255           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,255                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,256                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,256                 directory, all directories are treated like packages.
2024-05-10T11:54:58,256           ********************************************************************************

2024-05-10T11:54:58,257   !!
2024-05-10T11:54:58,257     check.warn(importable)
2024-05-10T11:54:58,257   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-05-10T11:54:58,258   !!

2024-05-10T11:54:58,258           ********************************************************************************
2024-05-10T11:54:58,259           ############################
2024-05-10T11:54:58,259           # Package would be ignored #
2024-05-10T11:54:58,259           ############################
2024-05-10T11:54:58,260           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-05-10T11:54:58,260           but it is absent from setuptools' `packages` configuration.

2024-05-10T11:54:58,260           This leads to an ambiguous overall configuration. If you want to distribute this
2024-05-10T11:54:58,261           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-05-10T11:54:58,261           to the `packages` configuration field.

2024-05-10T11:54:58,262           Alternatively, you can also rely on setuptools' discovery methods
2024-05-10T11:54:58,262           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-05-10T11:54:58,262           instead of `find_packages(...)`/`find:`).

2024-05-10T11:54:58,262           You can read more about "package discovery" on setuptools documentation page:

2024-05-10T11:54:58,263           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-05-10T11:54:58,263           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-05-10T11:54:58,264           already explicitly excluding 'moleculekit.wrapping' via
2024-05-10T11:54:58,264           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-05-10T11:54:58,264           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-05-10T11:54:58,264           combination with a more fine grained `package-data` configuration.

2024-05-10T11:54:58,265           You can read more about "package data files" on setuptools documentation page:

2024-05-10T11:54:58,265           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-05-10T11:54:58,266           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-05-10T11:54:58,266                 even if it does not contain any `.py` files.
2024-05-10T11:54:58,267                 On the other hand, currently there is no concept of package data
2024-05-10T11:54:58,267                 directory, all directories are treated like packages.
2024-05-10T11:54:58,267           ********************************************************************************

2024-05-10T11:54:58,268   !!
2024-05-10T11:54:58,268     check.warn(importable)
2024-05-10T11:54:58,268   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:58,268   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:58,269   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-05-10T11:54:58,269   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-05-10T11:54:58,269   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-05-10T11:54:58,269   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-05-10T11:54:58,269   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-05-10T11:54:58,269   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-05-10T11:54:58,269   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-05-10T11:54:58,270   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-05-10T11:54:58,270   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-05-10T11:54:58,272   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-05-10T11:54:58,273   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-05-10T11:54:58,297   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-05-10T11:54:58,299   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-05-10T11:54:58,300   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-05-10T11:54:58,318   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-05-10T11:54:58,320   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-05-10T11:54:58,321   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-05-10T11:54:58,324   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-05-10T11:54:58,326   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-05-10T11:54:58,537   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-05-10T11:54:58,538   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-05-10T11:54:58,541   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-05-10T11:54:58,542   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,543   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,545   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,547   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,550   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,552   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,554   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,556   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,558   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,560   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,562   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,564   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,566   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,568   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,570   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,573   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,575   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,577   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,579   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,582   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,583   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,585   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,588   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,590   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,592   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,594   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,596   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,598   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,600   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,602   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,604   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,606   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,608   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,610   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,612   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,614   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,616   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,618   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,620   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,622   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,624   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,626   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,628   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,630   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,633   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,635   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,637   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,639   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,641   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,643   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,645   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,647   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,650   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,652   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,654   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,656   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,658   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,660   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,662   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,664   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,666   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,668   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,670   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,672   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,674   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,676   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,678   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,680   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,682   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,684   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,686   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,688   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,690   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,692   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,694   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,696   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,698   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,700   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,702   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,704   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,706   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,707   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,710   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,711   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,714   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,715   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,717   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,719   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,721   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,723   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,725   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,726   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,728   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,730   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,732   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,734   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,736   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,738   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,740   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,742   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,744   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,745   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,748   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,750   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,751   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,754   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,756   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,758   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,760   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,762   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,764   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,766   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,768   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,770   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,772   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,773   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,776   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,778   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,780   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,782   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,784   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,786   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,787   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,789   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,791   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,793   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,795   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,797   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,799   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,801   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,803   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,805   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,807   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,809   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,811   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,813   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,815   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,817   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,819   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,821   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,823   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,825   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,827   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,829   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,831   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,833   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,835   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,836   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,838   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,840   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,842   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,844   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,846   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,848   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,850   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,852   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,855   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,857   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,859   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,861   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,863   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,865   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,867   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,869   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,871   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,873   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,875   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,877   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,879   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,880   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,883   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,884   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,886   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,888   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,890   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,892   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-05-10T11:54:58,894   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-05-10T11:54:58,895   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-05-10T11:54:58,914   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-05-10T11:54:58,916   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-05-10T11:54:58,918   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-05-10T11:54:58,919   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-05-10T11:54:58,921   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-05-10T11:54:58,922   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-05-10T11:54:58,928   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-05-10T11:54:58,929   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-05-10T11:54:58,957   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-05-10T11:54:58,959   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-05-10T11:54:58,960   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-05-10T11:54:58,983   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-05-10T11:54:58,986   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-05-10T11:54:58,988   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-05-10T11:54:58,989   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-05-10T11:54:58,992   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-05-10T11:54:58,994   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-05-10T11:54:58,998   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-05-10T11:54:58,999   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-05-10T11:54:59,002   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-05-10T11:54:59,003   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-05-10T11:54:59,022   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-05-10T11:54:59,025   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-05-10T11:54:59,028   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-05-10T11:54:59,029   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-05-10T11:54:59,031   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-05-10T11:54:59,034   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-05-10T11:54:59,037   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-05-10T11:54:59,039   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-05-10T11:54:59,043   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-05-10T11:54:59,044   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-05-10T11:54:59,048   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-05-10T11:54:59,049   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-05-10T11:54:59,090   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-05-10T11:54:59,094   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-05-10T11:54:59,097   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-05-10T11:54:59,099   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-05-10T11:54:59,128   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-05-10T11:54:59,131   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-05-10T11:54:59,134   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-05-10T11:54:59,135   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-05-10T11:54:59,138   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-05-10T11:54:59,141   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-05-10T11:54:59,145   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-05-10T11:54:59,148   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-05-10T11:54:59,150   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-05-10T11:54:59,153   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-05-10T11:54:59,154   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-05-10T11:54:59,157   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-05-10T11:54:59,161   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-05-10T11:54:59,165   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-05-10T11:54:59,167   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-05-10T11:54:59,171   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-05-10T11:54:59,172   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-05-10T11:54:59,198   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-05-10T11:54:59,201   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-05-10T11:54:59,202   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-05-10T11:54:59,235   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-05-10T11:54:59,238   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-05-10T11:54:59,239   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-05-10T11:54:59,266   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-05-10T11:54:59,269   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-05-10T11:54:59,270   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-05-10T11:54:59,291   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-05-10T11:54:59,303   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-05-10T11:54:59,304   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.32'
2024-05-10T11:54:59,304   running build_ext
2024-05-10T11:54:59,318   building 'moleculekit.interactions.hbonds' extension
2024-05-10T11:54:59,319   creating build/temp.linux-armv7l-cpython-39
2024-05-10T11:54:59,319   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-05-10T11:54:59,320   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-05-10T11:54:59,320   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-05-10T11:54:59,321   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-05-10T11:54:59,580   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T11:54:59,580                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T11:54:59,581                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T11:54:59,581                    from moleculekit/interactions/hbonds/hbonds.cpp:1265:
2024-05-10T11:54:59,581   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T11:54:59,581      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T11:54:59,581         |  ^~~~~~~
2024-05-10T11:55:22,727   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-05-10T11:55:22,728   moleculekit/interactions/hbonds/hbonds.cpp:21019:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T11:55:22,728   21019 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-05-10T11:55:22,728         |                                                    ^~~~~~~~~~~~~~~
2024-05-10T11:55:22,728   moleculekit/interactions/hbonds/hbonds.cpp:20032:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-05-10T11:55:22,729   20032 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-05-10T11:55:22,729         |                                                         ^~~~~~~~~~~~~~~
2024-05-10T11:55:25,899   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-05-10T11:55:26,216   building 'moleculekit.interactions.pipi' extension
2024-05-10T11:55:26,216   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-05-10T11:55:26,217   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-05-10T11:55:26,450   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T11:55:26,450                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T11:55:26,451                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T11:55:26,451                    from moleculekit/interactions/pipi/pipi.cpp:1265:
2024-05-10T11:55:26,451   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T11:55:26,451      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T11:55:26,451         |  ^~~~~~~
2024-05-10T11:55:54,630   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-05-10T11:55:54,950   building 'moleculekit.interactions.cationpi' extension
2024-05-10T11:55:54,951   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-05-10T11:55:54,952   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-05-10T11:55:55,186   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T11:55:55,186                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T11:55:55,186                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T11:55:55,186                    from moleculekit/interactions/cationpi/cationpi.cpp:1265:
2024-05-10T11:55:55,186   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T11:55:55,186      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T11:55:55,187         |  ^~~~~~~
2024-05-10T11:56:23,184   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-05-10T11:56:23,498   building 'moleculekit.interactions.sigmahole' extension
2024-05-10T11:56:23,499   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-05-10T11:56:23,500   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-05-10T11:56:23,737   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T11:56:23,737                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T11:56:23,737                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T11:56:23,737                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1265:
2024-05-10T11:56:23,737   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T11:56:23,738      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T11:56:23,738         |  ^~~~~~~
2024-05-10T11:56:51,138   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-05-10T11:56:51,458   building 'moleculekit.wrapping' extension
2024-05-10T11:56:51,458   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-05-10T11:56:51,459   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-05-10T11:56:51,693   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T11:56:51,693                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T11:56:51,693                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T11:56:51,693                    from moleculekit/wrapping/wrapping.cpp:1265:
2024-05-10T11:56:51,694   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T11:56:51,694      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T11:56:51,694         |  ^~~~~~~
2024-05-10T11:57:17,561   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-05-10T11:57:17,791   building 'moleculekit.bondguesser_utils' extension
2024-05-10T11:57:17,792   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-05-10T11:57:17,793   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-05-10T11:57:18,031   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T11:57:18,032                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T11:57:18,032                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T11:57:18,032                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1265:
2024-05-10T11:57:18,032   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T11:57:18,032      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T11:57:18,032         |  ^~~~~~~
2024-05-10T11:57:19,585   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-05-10T11:57:19,585   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19801:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-05-10T11:57:19,585   19801 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-05-10T11:57:19,585         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-05-10T11:57:19,585   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19813:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-05-10T11:57:19,586   19813 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-05-10T11:57:19,586         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-05-10T11:57:19,586   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19825:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-05-10T11:57:19,586   19825 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-05-10T11:57:19,586         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-05-10T11:57:19,586   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19864:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,586   19864 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-05-10T11:57:19,587         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,587   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19903:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,587   19903 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-05-10T11:57:19,587         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,587   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19942:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,587   19942 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T11:57:19,587         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,588   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19981:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,588   19981 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-05-10T11:57:19,588         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,588   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19987:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,588   19987 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-05-10T11:57:19,588         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,589   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20028:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,589   20028 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-05-10T11:57:19,589         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,589   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20034:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,589   20034 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T11:57:19,589         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,589   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20075:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,590   20075 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-05-10T11:57:19,590         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,590   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20081:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,590   20081 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T11:57:19,590         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,590   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20122:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,590   20122 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-05-10T11:57:19,590         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,591   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20175:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,591   20175 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T11:57:19,591         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,591   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20222:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,591   20222 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T11:57:19,591         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,591   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20263:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,592   20263 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-05-10T11:57:19,592         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,592   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20269:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,592   20269 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-05-10T11:57:19,592         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,592   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20275:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,592   20275 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T11:57:19,593         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,593   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20322:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,593   20322 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-05-10T11:57:19,593         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,593   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20328:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,593   20328 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T11:57:19,593         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,594   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20369:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,594   20369 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-05-10T11:57:19,594         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,594   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20381:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,594   20381 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T11:57:19,594         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,594   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20434:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-05-10T11:57:19,595   20434 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-05-10T11:57:19,595         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,614   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-05-10T11:57:19,614   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21056:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T11:57:19,614   21056 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-05-10T11:57:19,614         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-05-10T11:57:19,614   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21093:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T11:57:19,614   21093 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-05-10T11:57:19,615         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-05-10T11:57:42,710   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-05-10T11:57:43,007   building 'moleculekit.atomselect_utils' extension
2024-05-10T11:57:43,008   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-05-10T11:57:43,009   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-05-10T11:57:43,244   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T11:57:43,244                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T11:57:43,244                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T11:57:43,244                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1282:
2024-05-10T11:57:43,245   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T11:57:43,245      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T11:57:43,245         |  ^~~~~~~
2024-05-10T11:57:44,969   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-05-10T11:57:44,969   moleculekit/atomselect_utils/atomselect_utils.cpp:23255:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T11:57:44,969   23255 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-05-10T11:57:44,969         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-05-10T11:57:44,975   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-05-10T11:57:44,975   moleculekit/atomselect_utils/atomselect_utils.cpp:23507:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T11:57:44,975   23507 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-05-10T11:57:44,975         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-05-10T11:57:44,981   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-05-10T11:57:44,981   moleculekit/atomselect_utils/atomselect_utils.cpp:23774:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T11:57:44,981   23774 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-05-10T11:57:44,981         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-05-10T11:58:15,158   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-05-10T11:58:15,482   building 'moleculekit.distance_utils' extension
2024-05-10T11:58:15,482   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-05-10T11:58:15,483   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-05-10T11:58:15,720   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T11:58:15,720                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T11:58:15,720                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T11:58:15,720                    from moleculekit/distance_utils/distance_utils.cpp:1265:
2024-05-10T11:58:15,721   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T11:58:15,721      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T11:58:15,721         |  ^~~~~~~
2024-05-10T11:58:17,358   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-05-10T11:58:17,358   moleculekit/distance_utils/distance_utils.cpp:21359:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T11:58:17,358   21359 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-05-10T11:58:17,359         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-05-10T11:58:17,359   moleculekit/distance_utils/distance_utils.cpp:21371:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T11:58:17,359   21371 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-05-10T11:58:17,359         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-05-10T11:58:50,336   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-05-10T11:58:50,686   building 'moleculekit.occupancy_utils' extension
2024-05-10T11:58:50,687   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-05-10T11:58:50,687   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-05-10T11:58:50,938   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T11:58:50,938                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T11:58:50,938                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T11:58:50,938                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1265:
2024-05-10T11:58:50,939   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T11:58:50,939      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T11:58:50,939         |  ^~~~~~~
2024-05-10T11:59:13,979   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-05-10T11:59:14,193   building 'moleculekit.cython_utils' extension
2024-05-10T11:59:14,194   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-05-10T11:59:14,195   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-05-10T11:59:14,425   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T11:59:14,426                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T11:59:14,426                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T11:59:14,426                    from moleculekit/cython_utils/cython_utils.cpp:1265:
2024-05-10T11:59:14,426   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T11:59:14,426      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T11:59:14,426         |  ^~~~~~~
2024-05-10T11:59:39,816   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-05-10T11:59:40,131   building 'moleculekit.xtc' extension
2024-05-10T11:59:40,132   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-05-10T11:59:40,132   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-05-10T11:59:40,133   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-05-10T11:59:40,134   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-05-10T11:59:40,371   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,372      66 |  "OK",
2024-05-10T11:59:40,372         |  ^~~~
2024-05-10T11:59:40,372   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,372      67 |  "Header",
2024-05-10T11:59:40,372         |  ^~~~~~~~
2024-05-10T11:59:40,372   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,373      68 |  "String",
2024-05-10T11:59:40,373         |  ^~~~~~~~
2024-05-10T11:59:40,373   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,373      69 |  "Double",
2024-05-10T11:59:40,373         |  ^~~~~~~~
2024-05-10T11:59:40,373   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,373      70 |  "Integer",
2024-05-10T11:59:40,374         |  ^~~~~~~~~
2024-05-10T11:59:40,374   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,374      71 |  "Float",
2024-05-10T11:59:40,374         |  ^~~~~~~
2024-05-10T11:59:40,374   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,374      72 |  "Unsigned integer",
2024-05-10T11:59:40,374         |  ^~~~~~~~~~~~~~~~~~
2024-05-10T11:59:40,374   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,375      73 |  "Compressed 3D coordinate",
2024-05-10T11:59:40,375         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:59:40,375   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,375      74 |  "Closing file",
2024-05-10T11:59:40,375         |  ^~~~~~~~~~~~~~
2024-05-10T11:59:40,375   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,375      75 |  "Magic number",
2024-05-10T11:59:40,376         |  ^~~~~~~~~~~~~~
2024-05-10T11:59:40,376   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,376      76 |  "Not enough memory",
2024-05-10T11:59:40,376         |  ^~~~~~~~~~~~~~~~~~~
2024-05-10T11:59:40,376   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,376      77 |  "End of file",
2024-05-10T11:59:40,376         |  ^~~~~~~~~~~~~
2024-05-10T11:59:40,377   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T11:59:40,377      78 |  "File not found"
2024-05-10T11:59:40,377         |  ^~~~~~~~~~~~~~~~
2024-05-10T11:59:40,381   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-05-10T11:59:40,381   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,381     459 |     while (size >= num && num_of_bits < 32)
2024-05-10T11:59:40,381         |            ~~~~~^~~~~~
2024-05-10T11:59:40,382   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-05-10T11:59:40,382   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T11:59:40,382     505 |     while (bytes[num_of_bytes] >= num)
2024-05-10T11:59:40,382         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-05-10T11:59:40,384   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-05-10T11:59:40,384   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,384     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-05-10T11:59:40,384         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-05-10T11:59:40,385   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,385     616 |   for (i = 0; i < num_of_bytes; i++)
2024-05-10T11:59:40,385         |               ~~^~~~~~~~~~~~~~
2024-05-10T11:59:40,385   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,385     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-05-10T11:59:40,385         |               ~~^~~~~~~~~~~~~~~~
2024-05-10T11:59:40,386   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-05-10T11:59:40,386   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T11:59:40,386     664 |   if (lastbits < num_of_bits)
2024-05-10T11:59:40,386         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-05-10T11:59:40,389   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-05-10T11:59:40,389   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T11:59:40,390     785 |  if(size3>xfp->buf1size)
2024-05-10T11:59:40,390         |     ~~~~~^~~~~~~~~~~~~~
2024-05-10T11:59:40,391   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T11:59:40,391     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T11:59:40,391         |                   ^
2024-05-10T11:59:40,394   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,394     932 |     if(countmjh >= size3 ) { return -1; }
2024-05-10T11:59:40,394         |        ~~~~~~~~~^~~~~~~~
2024-05-10T11:59:40,394   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,394     935 |     if(countmjh >= size3 ) { return -1; }
2024-05-10T11:59:40,395         |        ~~~~~~~~~^~~~~~~~
2024-05-10T11:59:40,395   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,395     938 |     if(countmjh >= size3 ) { return -1; }
2024-05-10T11:59:40,395         |        ~~~~~~~~~^~~~~~~~
2024-05-10T11:59:40,395   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,395     945 |     if(countmjh >= size3 ) { return -1; }
2024-05-10T11:59:40,395         |        ~~~~~~~~~^~~~~~~~
2024-05-10T11:59:40,395   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,396     948 |     if(countmjh >= size3 ) { return -1; }
2024-05-10T11:59:40,396         |        ~~~~~~~~~^~~~~~~~
2024-05-10T11:59:40,396   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,396     951 |     if(countmjh >= size3 ) { return -1; }
2024-05-10T11:59:40,396         |        ~~~~~~~~~^~~~~~~~
2024-05-10T11:59:40,396   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-05-10T11:59:40,396     756 |  int smallidx,  minidx, maxidx;
2024-05-10T11:59:40,397         |                 ^~~~~~
2024-05-10T11:59:40,397   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-05-10T11:59:40,397     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-05-10T11:59:40,397         |                         ^~~~~~
2024-05-10T11:59:40,397   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-05-10T11:59:40,397     763 |  int errval=1;
2024-05-10T11:59:40,397         |      ^~~~~~
2024-05-10T11:59:40,398   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-05-10T11:59:40,398   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T11:59:40,398    1011 |  if(size3>xfp->buf1size)
2024-05-10T11:59:40,399         |     ~~~~~^~~~~~~~~~~~~~
2024-05-10T11:59:40,400   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,400    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-05-10T11:59:40,401         |                     ~~~~~~~~^~~~~~~
2024-05-10T11:59:40,401   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,401    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-05-10T11:59:40,401         |                    ~~~~~~~~^~~~~~~
2024-05-10T11:59:40,402   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,402    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-05-10T11:59:40,402         |                    ~~~~~~~~^~~~~~~
2024-05-10T11:59:40,403   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,403    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-05-10T11:59:40,403         |                  ^
2024-05-10T11:59:40,404   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T11:59:40,404    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T11:59:40,404         |                   ^
2024-05-10T11:59:40,407   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,408    1275 |  if(tmp==(unsigned int)buf2[0])
2024-05-10T11:59:40,408         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:59:40,408   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-05-10T11:59:40,408    1001 |  int errval;
2024-05-10T11:59:40,408         |      ^~~~~~
2024-05-10T11:59:40,410   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-05-10T11:59:40,411   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T11:59:40,411    1316 |  if(size3>xfp->buf1size)
2024-05-10T11:59:40,411         |     ~~~~~^~~~~~~~~~~~~~
2024-05-10T11:59:40,413   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T11:59:40,413    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T11:59:40,413         |                   ^
2024-05-10T11:59:40,415   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-05-10T11:59:40,416    1289 |  int smallidx,  maxidx, minidx;
2024-05-10T11:59:40,416         |                         ^~~~~~
2024-05-10T11:59:40,416   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-05-10T11:59:40,416    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-05-10T11:59:40,416         |                         ^~~~~~
2024-05-10T11:59:40,416   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-05-10T11:59:40,416    1297 |  int errval=1;
2024-05-10T11:59:40,416         |      ^~~~~~
2024-05-10T11:59:40,418   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-05-10T11:59:40,418   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T11:59:40,418    1513 |  if(size3>xfp->buf1size) {
2024-05-10T11:59:40,418         |     ~~~~~^~~~~~~~~~~~~~
2024-05-10T11:59:40,422   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,422    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-05-10T11:59:40,422         |                  ^
2024-05-10T11:59:40,423   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T11:59:40,423    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T11:59:40,423         |                   ^
2024-05-10T11:59:40,426   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T11:59:40,426    1743 |  if(tmp==(unsigned int)buf2[0])
2024-05-10T11:59:40,427         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T11:59:40,427   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-05-10T11:59:40,427    1504 |  int errval=1;
2024-05-10T11:59:40,427         |      ^~~~~~
2024-05-10T11:59:42,648   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-05-10T11:59:42,908   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-05-10T11:59:43,483   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-05-10T11:59:43,483   moleculekit/fileformats/xtc/src/xtc.cpp:234:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T11:59:43,483     234 |   for (aidx = 0; aidx < natoms; aidx++)
2024-05-10T11:59:43,484         |                  ~~~~~^~~~~~~~
2024-05-10T11:59:43,490   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-05-10T11:59:43,490   moleculekit/fileformats/xtc/src/xtc.cpp:436:16: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T11:59:43,490     436 |  for (f = 0; f < nframes; f++)
2024-05-10T11:59:43,490         |              ~~^~~~~~~~~
2024-05-10T11:59:43,491   moleculekit/fileformats/xtc/src/xtc.cpp:451:17: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T11:59:43,491     451 |   for (i = 0; i < natoms; i++)
2024-05-10T11:59:43,491         |               ~~^~~~~~~~
2024-05-10T11:59:43,493   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-05-10T11:59:43,493   moleculekit/fileformats/xtc/src/xtc.cpp:541:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T11:59:43,494     541 |    for (aidx = 0; aidx < natoms; aidx++)
2024-05-10T11:59:43,494         |                   ~~~~~^~~~~~~~
2024-05-10T11:59:43,496   moleculekit/fileformats/xtc/src/xtc.cpp:610:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-05-10T11:59:43,496     610 |    for (aidx = 0; aidx < natoms; aidx++)
2024-05-10T11:59:43,496         |                   ~~~~~^~~~~~~~
2024-05-10T11:59:44,281   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-05-10T11:59:44,524   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T11:59:44,525                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T11:59:44,525                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T11:59:44,525                    from moleculekit/fileformats/xtc/xtc.cpp:1269:
2024-05-10T11:59:44,525   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T11:59:44,525      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T11:59:44,525         |  ^~~~~~~
2024-05-10T12:00:04,587   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-05-10T12:00:04,901   building 'moleculekit.trr' extension
2024-05-10T12:00:04,902   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-05-10T12:00:05,018   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-05-10T12:00:05,250   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,250      66 |  "OK",
2024-05-10T12:00:05,250         |  ^~~~
2024-05-10T12:00:05,250   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,251      67 |  "Header",
2024-05-10T12:00:05,251         |  ^~~~~~~~
2024-05-10T12:00:05,251   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,251      68 |  "String",
2024-05-10T12:00:05,251         |  ^~~~~~~~
2024-05-10T12:00:05,251   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,251      69 |  "Double",
2024-05-10T12:00:05,252         |  ^~~~~~~~
2024-05-10T12:00:05,252   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,252      70 |  "Integer",
2024-05-10T12:00:05,252         |  ^~~~~~~~~
2024-05-10T12:00:05,252   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,252      71 |  "Float",
2024-05-10T12:00:05,252         |  ^~~~~~~
2024-05-10T12:00:05,253   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,253      72 |  "Unsigned integer",
2024-05-10T12:00:05,253         |  ^~~~~~~~~~~~~~~~~~
2024-05-10T12:00:05,253   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,253      73 |  "Compressed 3D coordinate",
2024-05-10T12:00:05,253         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T12:00:05,253   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,254      74 |  "Closing file",
2024-05-10T12:00:05,254         |  ^~~~~~~~~~~~~~
2024-05-10T12:00:05,254   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,254      75 |  "Magic number",
2024-05-10T12:00:05,254         |  ^~~~~~~~~~~~~~
2024-05-10T12:00:05,254   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,254      76 |  "Not enough memory",
2024-05-10T12:00:05,254         |  ^~~~~~~~~~~~~~~~~~~
2024-05-10T12:00:05,255   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,255      77 |  "End of file",
2024-05-10T12:00:05,255         |  ^~~~~~~~~~~~~
2024-05-10T12:00:05,255   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-05-10T12:00:05,255      78 |  "File not found"
2024-05-10T12:00:05,255         |  ^~~~~~~~~~~~~~~~
2024-05-10T12:00:05,259   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-05-10T12:00:05,260   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,260     459 |     while (size >= num && num_of_bits < 32)
2024-05-10T12:00:05,260         |            ~~~~~^~~~~~
2024-05-10T12:00:05,260   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-05-10T12:00:05,260   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:00:05,261     505 |     while (bytes[num_of_bytes] >= num)
2024-05-10T12:00:05,261         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-05-10T12:00:05,263   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-05-10T12:00:05,263   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,263     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-05-10T12:00:05,263         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-05-10T12:00:05,263   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,264     616 |   for (i = 0; i < num_of_bytes; i++)
2024-05-10T12:00:05,264         |               ~~^~~~~~~~~~~~~~
2024-05-10T12:00:05,264   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,264     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-05-10T12:00:05,264         |               ~~^~~~~~~~~~~~~~~~
2024-05-10T12:00:05,264   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-05-10T12:00:05,264   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:00:05,264     664 |   if (lastbits < num_of_bits)
2024-05-10T12:00:05,265         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-05-10T12:00:05,268   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-05-10T12:00:05,268   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:00:05,268     785 |  if(size3>xfp->buf1size)
2024-05-10T12:00:05,268         |     ~~~~~^~~~~~~~~~~~~~
2024-05-10T12:00:05,270   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:00:05,270     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T12:00:05,270         |                   ^
2024-05-10T12:00:05,272   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,273     932 |     if(countmjh >= size3 ) { return -1; }
2024-05-10T12:00:05,273         |        ~~~~~~~~~^~~~~~~~
2024-05-10T12:00:05,273   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,273     935 |     if(countmjh >= size3 ) { return -1; }
2024-05-10T12:00:05,273         |        ~~~~~~~~~^~~~~~~~
2024-05-10T12:00:05,273   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,274     938 |     if(countmjh >= size3 ) { return -1; }
2024-05-10T12:00:05,274         |        ~~~~~~~~~^~~~~~~~
2024-05-10T12:00:05,274   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,274     945 |     if(countmjh >= size3 ) { return -1; }
2024-05-10T12:00:05,274         |        ~~~~~~~~~^~~~~~~~
2024-05-10T12:00:05,274   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,274     948 |     if(countmjh >= size3 ) { return -1; }
2024-05-10T12:00:05,274         |        ~~~~~~~~~^~~~~~~~
2024-05-10T12:00:05,275   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,275     951 |     if(countmjh >= size3 ) { return -1; }
2024-05-10T12:00:05,275         |        ~~~~~~~~~^~~~~~~~
2024-05-10T12:00:05,275   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-05-10T12:00:05,275     756 |  int smallidx,  minidx, maxidx;
2024-05-10T12:00:05,275         |                 ^~~~~~
2024-05-10T12:00:05,275   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-05-10T12:00:05,275     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-05-10T12:00:05,276         |                         ^~~~~~
2024-05-10T12:00:05,276   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-05-10T12:00:05,276     763 |  int errval=1;
2024-05-10T12:00:05,276         |      ^~~~~~
2024-05-10T12:00:05,277   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-05-10T12:00:05,277   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:00:05,277    1011 |  if(size3>xfp->buf1size)
2024-05-10T12:00:05,277         |     ~~~~~^~~~~~~~~~~~~~
2024-05-10T12:00:05,279   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,279    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-05-10T12:00:05,279         |                     ~~~~~~~~^~~~~~~
2024-05-10T12:00:05,280   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,280    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-05-10T12:00:05,280         |                    ~~~~~~~~^~~~~~~
2024-05-10T12:00:05,280   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,280    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-05-10T12:00:05,280         |                    ~~~~~~~~^~~~~~~
2024-05-10T12:00:05,282   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,282    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-05-10T12:00:05,282         |                  ^
2024-05-10T12:00:05,282   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:00:05,282    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T12:00:05,283         |                   ^
2024-05-10T12:00:05,286   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,286    1275 |  if(tmp==(unsigned int)buf2[0])
2024-05-10T12:00:05,286         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T12:00:05,286   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-05-10T12:00:05,287    1001 |  int errval;
2024-05-10T12:00:05,287         |      ^~~~~~
2024-05-10T12:00:05,289   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-05-10T12:00:05,289   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:00:05,290    1316 |  if(size3>xfp->buf1size)
2024-05-10T12:00:05,290         |     ~~~~~^~~~~~~~~~~~~~
2024-05-10T12:00:05,291   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:00:05,291    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T12:00:05,292         |                   ^
2024-05-10T12:00:05,294   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-05-10T12:00:05,294    1289 |  int smallidx,  maxidx, minidx;
2024-05-10T12:00:05,294         |                         ^~~~~~
2024-05-10T12:00:05,295   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-05-10T12:00:05,295    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-05-10T12:00:05,295         |                         ^~~~~~
2024-05-10T12:00:05,295   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-05-10T12:00:05,295    1297 |  int errval=1;
2024-05-10T12:00:05,295         |      ^~~~~~
2024-05-10T12:00:05,296   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-05-10T12:00:05,296   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:00:05,297    1513 |  if(size3>xfp->buf1size) {
2024-05-10T12:00:05,297         |     ~~~~~^~~~~~~~~~~~~~
2024-05-10T12:00:05,301   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,301    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-05-10T12:00:05,301         |                  ^
2024-05-10T12:00:05,301   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:00:05,301    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-05-10T12:00:05,302         |                   ^
2024-05-10T12:00:05,305   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:00:05,305    1743 |  if(tmp==(unsigned int)buf2[0])
2024-05-10T12:00:05,305         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T12:00:05,306   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-05-10T12:00:05,306    1504 |  int errval=1;
2024-05-10T12:00:05,306         |      ^~~~~~
2024-05-10T12:00:07,567   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-05-10T12:00:07,661   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-05-10T12:00:07,661   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-05-10T12:00:07,661     111 |         if (slen != strlen(version)+1)
2024-05-10T12:00:07,661         |                  ^~
2024-05-10T12:00:07,661   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-05-10T12:00:07,662     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-05-10T12:00:07,662         |                                              ^~
2024-05-10T12:00:08,227   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-05-10T12:00:08,545   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T12:00:08,545                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T12:00:08,545                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T12:00:08,545                    from moleculekit/fileformats/xtc/trr.c:1261:
2024-05-10T12:00:08,545   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T12:00:08,546      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T12:00:08,546         |  ^~~~~~~
2024-05-10T12:00:09,167   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-05-10T12:00:09,176   moleculekit/fileformats/xtc/trr.c:16352:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-05-10T12:00:09,176   16352 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-05-10T12:00:09,176         |                                     ^~
2024-05-10T12:00:29,585   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-05-10T12:00:29,585   moleculekit/fileformats/xtc/trr.c:1163:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:29,586    1163 |   #define PyInt_FromLong               PyLong_FromLong
2024-05-10T12:00:29,586         |                                        ^~~~~~~~~~~~~~~
2024-05-10T12:00:29,594   moleculekit/fileformats/xtc/trr.c:14260:7: note: ‘__pyx_v_status’ was declared here
2024-05-10T12:00:29,594   14260 |   int __pyx_v_status;
2024-05-10T12:00:29,594         |       ^~~~~~~~~~~~~~
2024-05-10T12:00:39,991   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-05-10T12:00:39,998   moleculekit/fileformats/xtc/trr.c:11559:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:39,998   11559 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-05-10T12:00:39,998         |                   ^
2024-05-10T12:00:40,005   moleculekit/fileformats/xtc/trr.c:11555:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,005   11555 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-05-10T12:00:40,005         |                   ^
2024-05-10T12:00:40,006   moleculekit/fileformats/xtc/trr.c:2509:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,006    2509 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-05-10T12:00:40,006         |                                                                                               ^
2024-05-10T12:00:40,011   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-05-10T12:00:40,012   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-05-10T12:00:40,012         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-05-10T12:00:40,018   moleculekit/fileformats/xtc/trr.c:11549:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,018   11549 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-05-10T12:00:40,018         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-05-10T12:00:40,024   moleculekit/fileformats/xtc/trr.c:11502:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,025   11502 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-05-10T12:00:40,025         |                   ^
2024-05-10T12:00:40,031   moleculekit/fileformats/xtc/trr.c:11498:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,032   11498 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-05-10T12:00:40,032         |                   ^
2024-05-10T12:00:40,032   moleculekit/fileformats/xtc/trr.c:2509:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,033    2509 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-05-10T12:00:40,033         |                                                                                               ^
2024-05-10T12:00:40,038   moleculekit/fileformats/xtc/trr.c:10107:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-05-10T12:00:40,038   10107 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-05-10T12:00:40,039         |                     ^~~~~~~~~~~~~~~~~~~~
2024-05-10T12:00:40,044   moleculekit/fileformats/xtc/trr.c:11492:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,044   11492 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-05-10T12:00:40,045         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-05-10T12:00:40,050   moleculekit/fileformats/xtc/trr.c:11891:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,050   11891 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-05-10T12:00:40,051         |                 ^
2024-05-10T12:00:40,057   moleculekit/fileformats/xtc/trr.c:11887:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,058   11887 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-05-10T12:00:40,058         |                 ^
2024-05-10T12:00:40,064   moleculekit/fileformats/xtc/trr.c:11732:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,065   11732 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-05-10T12:00:40,065         |                   ^
2024-05-10T12:00:40,071   moleculekit/fileformats/xtc/trr.c:11728:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,072   11728 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-05-10T12:00:40,072         |                   ^
2024-05-10T12:00:40,077   moleculekit/fileformats/xtc/trr.c:11784:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,078   11784 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-05-10T12:00:40,078         |                   ^
2024-05-10T12:00:40,085   moleculekit/fileformats/xtc/trr.c:11780:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:00:40,085   11780 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-05-10T12:00:40,085         |                   ^
2024-05-10T12:00:46,572   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-05-10T12:00:46,765   building 'moleculekit.dcd' extension
2024-05-10T12:00:46,766   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-05-10T12:00:46,767   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-05-10T12:00:46,768   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-05-10T12:00:47,091   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T12:00:47,092                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T12:00:47,092                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T12:00:47,092                    from moleculekit/fileformats/dcd/dcd.c:1256:
2024-05-10T12:00:47,092   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T12:00:47,092      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T12:00:47,092         |  ^~~~~~~
2024-05-10T12:00:48,125   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-05-10T12:00:48,125                    from moleculekit/fileformats/dcd/dcd.c:1262:
2024-05-10T12:00:48,125   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-05-10T12:00:48,125     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-05-10T12:00:48,126         |            ^~~~~~~~~~~~~
2024-05-10T12:00:48,126   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-05-10T12:00:48,126     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-05-10T12:00:48,126         |            ^~~~~~~~~~~~~~
2024-05-10T12:00:48,126   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-05-10T12:00:48,126     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-05-10T12:00:48,126         |            ^~~~~~~~~~~~~~~
2024-05-10T12:00:48,127   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-05-10T12:00:48,127     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-05-10T12:00:48,127         |                   ^~~~~~~~~
2024-05-10T12:00:48,127   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-05-10T12:00:48,127     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-05-10T12:00:48,127         |                   ^~~~~~~~~
2024-05-10T12:00:48,127   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-05-10T12:00:48,128     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-05-10T12:00:48,128         |                   ^~~~~~~~~
2024-05-10T12:00:48,128   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-05-10T12:00:48,128     394 | static int fio_fclose(fio_fd fd) {
2024-05-10T12:00:48,128         |            ^~~~~~~~~~
2024-05-10T12:00:48,128   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-05-10T12:00:48,128     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-05-10T12:00:48,128         |            ^~~~~~~~
2024-05-10T12:01:00,762   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-05-10T12:01:00,762   moleculekit/fileformats/dcd/dcd.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:01:00,762    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-05-10T12:01:00,763         |                                        ^~~~~~~~~~~~~~~
2024-05-10T12:01:00,767   moleculekit/fileformats/dcd/dcd.c:8022:7: note: ‘__pyx_v_i’ was declared here
2024-05-10T12:01:00,767    8022 |   int __pyx_v_i;
2024-05-10T12:01:00,767         |       ^~~~~~~~~
2024-05-10T12:01:03,994   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-05-10T12:01:04,180   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-05-10T12:01:04,180   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:01:04,180     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-05-10T12:01:04,181         |                                                       ^~
2024-05-10T12:01:04,181   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:01:04,181     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-05-10T12:01:04,181         |                                                      ^~
2024-05-10T12:01:04,181   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:01:04,181     194 |     if (input_integer[0] != dcdcordmagic)
2024-05-10T12:01:04,182         |                          ^~
2024-05-10T12:01:04,184   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:01:04,185     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-05-10T12:01:04,185         |                                               ^~
2024-05-10T12:01:04,185   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-05-10T12:01:04,185     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-05-10T12:01:04,185         |                                               ^~
2024-05-10T12:01:04,189   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-05-10T12:01:04,189   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:01:04,189     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-05-10T12:01:04,189         |                       ^~
2024-05-10T12:01:04,190   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-05-10T12:01:04,190     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-05-10T12:01:04,190         |                                                 ^~
2024-05-10T12:01:04,212   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-05-10T12:01:04,212   At top level:
2024-05-10T12:01:04,213   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-05-10T12:01:04,213      96 | static void swap2_aligned(void *v, long ndata) {
2024-05-10T12:01:04,213         |             ^~~~~~~~~~~~~
2024-05-10T12:01:04,213   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-05-10T12:01:04,213      32 | static void swap2_unaligned(void *v, long ndata) {
2024-05-10T12:01:04,213         |             ^~~~~~~~~~~~~~~
2024-05-10T12:01:04,213   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-05-10T12:01:04,214   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-05-10T12:01:04,214     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-05-10T12:01:04,214         |            ^~~~~~~~~~~~~
2024-05-10T12:01:04,214   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-05-10T12:01:04,214     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-05-10T12:01:04,214         |            ^~~~~~~~~~~~~~
2024-05-10T12:01:05,317   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-05-10T12:01:05,466   building 'moleculekit.binpos' extension
2024-05-10T12:01:05,467   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-05-10T12:01:05,469   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-05-10T12:01:05,470   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-05-10T12:01:05,801   In file included from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-05-10T12:01:05,801                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-05-10T12:01:05,802                    from /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-05-10T12:01:05,802                    from moleculekit/fileformats/binpos/binpos.c:1256:
2024-05-10T12:01:05,802   /tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-05-10T12:01:05,802      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-05-10T12:01:05,802         |  ^~~~~~~
2024-05-10T12:01:19,270   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-05-10T12:01:19,274   moleculekit/fileformats/binpos/binpos.c:8045:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:01:19,274    8045 |   if (__pyx_t_1) {
2024-05-10T12:01:19,275         |      ^
2024-05-10T12:01:19,278   moleculekit/fileformats/binpos/binpos.c:7522:7: note: ‘__pyx_v_status’ was declared here
2024-05-10T12:01:19,279    7522 |   int __pyx_v_status;
2024-05-10T12:01:19,279         |       ^~~~~~~~~~~~~~
2024-05-10T12:01:19,279   moleculekit/fileformats/binpos/binpos.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-05-10T12:01:19,279    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-05-10T12:01:19,279         |                                        ^~~~~~~~~~~~~~~
2024-05-10T12:01:19,283   moleculekit/fileformats/binpos/binpos.c:7519:7: note: ‘__pyx_v_i’ was declared here
2024-05-10T12:01:19,284    7519 |   int __pyx_v_i;
2024-05-10T12:01:19,284         |       ^~~~~~~~~
2024-05-10T12:01:21,520   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-05-10T12:01:21,818   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-05-10T12:01:21,951   building 'moleculekit.tmalign' extension
2024-05-10T12:01:21,952   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-05-10T12:01:21,953   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-05-10T12:01:21,954   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-05-10T12:01:51,340   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-ffgqyra7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-05-10T12:02:09,772   In file included from /usr/include/c++/10/vector:72,
2024-05-10T12:02:09,773                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-05-10T12:02:09,773   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-05-10T12:02:09,773   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-05-10T12:02:09,773     426 |       vector<_Tp, _Alloc>::
2024-05-10T12:02:09,773         |       ^~~~~~~~~~~~~~~~~~~
2024-05-10T12:02:10,351   In file included from /usr/include/c++/10/vector:67,
2024-05-10T12:02:10,352                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-05-10T12:02:10,352   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-05-10T12:02:10,352   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-05-10T12:02:10,352    1198 |    _M_realloc_insert(end(), __x);
2024-05-10T12:02:10,352         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-05-10T12:02:10,352   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-05-10T12:02:10,353    1198 |    _M_realloc_insert(end(), __x);
2024-05-10T12:02:10,353         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-05-10T12:02:10,353   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-05-10T12:02:10,353    1198 |    _M_realloc_insert(end(), __x);
2024-05-10T12:02:10,354         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-05-10T12:02:12,821   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-05-10T12:02:13,273   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-05-10T12:02:13,274   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.32'
2024-05-10T12:02:13,274   installing to build/bdist.linux-armv7l/wheel
2024-05-10T12:02:13,274   running install
2024-05-10T12:02:13,300   running install_lib
2024-05-10T12:02:13,306   creating build/bdist.linux-armv7l
2024-05-10T12:02:13,307   creating build/bdist.linux-armv7l/wheel
2024-05-10T12:02:13,309   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:13,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:13,329   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-05-10T12:02:13,330   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-05-10T12:02:13,334   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-05-10T12:02:13,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-05-10T12:02:13,339   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T12:02:13,341   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T12:02:13,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T12:02:13,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T12:02:13,350   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-05-10T12:02:13,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-05-10T12:02:13,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-05-10T12:02:13,356   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-05-10T12:02:13,358   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-05-10T12:02:13,361   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmolcdp.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T12:02:13,363   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T12:02:13,366   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T12:02:13,368   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-05-10T12:02:13,370   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:13,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:13,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:13,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:13,403   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-05-10T12:02:13,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-05-10T12:02:13,407   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-05-10T12:02:13,409   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-05-10T12:02:13,412   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-05-10T12:02:13,414   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-05-10T12:02:13,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-05-10T12:02:13,448   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-05-10T12:02:13,451   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:13,453   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-05-10T12:02:13,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-05-10T12:02:13,457   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T12:02:13,458   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T12:02:13,460   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T12:02:13,479   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T12:02:13,481   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T12:02:13,503   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T12:02:13,506   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-05-10T12:02:13,506   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-05-10T12:02:13,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-05-10T12:02:13,511   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-05-10T12:02:13,513   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-05-10T12:02:13,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-05-10T12:02:13,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T12:02:13,520   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T12:02:13,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T12:02:13,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T12:02:13,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T12:02:13,526   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T12:02:13,528   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T12:02:13,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-05-10T12:02:13,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-05-10T12:02:13,533   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-05-10T12:02:13,534   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-05-10T12:02:13,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-05-10T12:02:13,557   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-05-10T12:02:13,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-05-10T12:02:13,562   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-05-10T12:02:13,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-05-10T12:02:13,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-05-10T12:02:13,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-05-10T12:02:13,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-05-10T12:02:13,571   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-05-10T12:02:13,573   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-05-10T12:02:13,575   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-05-10T12:02:13,576   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-05-10T12:02:13,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-05-10T12:02:13,580   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-05-10T12:02:13,581   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-05-10T12:02:13,584   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-05-10T12:02:13,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-05-10T12:02:13,588   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-05-10T12:02:13,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-05-10T12:02:13,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-05-10T12:02:13,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-05-10T12:02:13,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-05-10T12:02:13,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:13,616   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-05-10T12:02:13,617   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-05-10T12:02:13,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-05-10T12:02:13,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:13,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:13,650   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:13,663   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T12:02:13,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T12:02:13,687   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-05-10T12:02:13,688   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-05-10T12:02:13,690   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-05-10T12:02:13,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T12:02:13,738   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T12:02:13,742   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-05-10T12:02:13,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-05-10T12:02:13,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-05-10T12:02:13,767   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-05-10T12:02:13,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-05-10T12:02:13,788   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-05-10T12:02:13,791   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T12:02:13,814   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-05-10T12:02:13,815   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-05-10T12:02:13,834   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-05-10T12:02:13,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T12:02:13,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-05-10T12:02:13,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:13,864   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-05-10T12:02:13,865   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-05-10T12:02:13,869   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,871   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,873   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,877   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,879   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,884   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,886   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,888   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,893   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,895   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,899   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,913   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,917   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,921   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,924   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,926   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,929   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,931   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,932   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,936   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,939   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,943   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,953   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,955   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,957   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,959   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,965   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,972   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,976   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,978   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,983   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,988   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,989   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,991   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,993   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,996   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:13,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,003   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,007   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,009   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,011   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,012   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,014   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,016   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,029   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,030   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,036   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,044   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,046   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,049   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,052   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,062   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,064   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,065   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,067   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,069   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,075   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,090   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,094   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,096   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,098   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,100   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,112   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,114   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,117   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,119   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,121   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,126   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,128   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,164   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,168   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,169   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,171   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,173   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,174   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,176   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,178   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,180   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-05-10T12:02:14,182   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-05-10T12:02:14,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-05-10T12:02:14,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-05-10T12:02:14,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-05-10T12:02:14,376   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-05-10T12:02:14,378   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,382   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,386   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,387   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,396   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,401   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,407   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,410   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-05-10T12:02:14,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-05-10T12:02:14,412   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-05-10T12:02:14,414   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,416   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,420   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-05-10T12:02:14,424   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-05-10T12:02:14,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-05-10T12:02:14,427   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-05-10T12:02:14,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,455   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,480   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-05-10T12:02:14,481   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-05-10T12:02:14,504   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-05-10T12:02:14,506   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,508   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-05-10T12:02:14,509   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-05-10T12:02:14,510   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-05-10T12:02:14,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-05-10T12:02:14,515   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-05-10T12:02:14,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-05-10T12:02:14,519   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-05-10T12:02:14,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-05-10T12:02:14,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-05-10T12:02:14,524   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-05-10T12:02:14,525   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-05-10T12:02:14,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-05-10T12:02:14,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-05-10T12:02:14,533   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-05-10T12:02:14,534   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-05-10T12:02:14,536   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,555   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,559   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,561   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,620   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,679   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,681   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,708   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,730   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-05-10T12:02:14,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-05-10T12:02:14,734   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-05-10T12:02:14,752   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-05-10T12:02:14,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-05-10T12:02:14,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-05-10T12:02:14,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,775   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,778   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-05-10T12:02:14,779   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-05-10T12:02:14,781   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-05-10T12:02:14,808   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-05-10T12:02:14,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-05-10T12:02:14,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-05-10T12:02:14,816   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-05-10T12:02:14,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-05-10T12:02:14,820   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,823   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,826   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,828   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,830   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,832   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,835   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,843   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,852   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-05-10T12:02:14,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-05-10T12:02:14,883   running install_egg_info
2024-05-10T12:02:14,889   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.32-py3.9.egg-info
2024-05-10T12:02:14,901   running install_scripts
2024-05-10T12:02:14,949   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.32.dist-info/WHEEL
2024-05-10T12:02:14,953   creating '/tmp/pip-wheel-cngdb13a/.tmp-e77puo9k/moleculekit-1.8.32-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-05-10T12:02:14,956   adding 'moleculekit/__init__.py'
2024-05-10T12:02:14,957   adding 'moleculekit/_version.py'
2024-05-10T12:02:14,959   adding 'moleculekit/align.py'
2024-05-10T12:02:15,269   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:15,431   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:15,438   adding 'moleculekit/bondguesser.py'
2024-05-10T12:02:15,680   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:15,689   adding 'moleculekit/config.py'
2024-05-10T12:02:15,945   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:16,118   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:16,124   adding 'moleculekit/dihedral.py'
2024-05-10T12:02:16,125   adding 'moleculekit/distance.py'
2024-05-10T12:02:16,453   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:16,465   adding 'moleculekit/home.py'
2024-05-10T12:02:16,466   adding 'moleculekit/logging.ini'
2024-05-10T12:02:16,480   adding 'moleculekit/molecule.py'
2024-05-10T12:02:16,707   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:16,715   adding 'moleculekit/opm.py'
2024-05-10T12:02:16,718   adding 'moleculekit/periodictable.py'
2024-05-10T12:02:16,719   adding 'moleculekit/pymolgraphics.py'
2024-05-10T12:02:16,720   adding 'moleculekit/rcsb.py'
2024-05-10T12:02:16,722   adding 'moleculekit/rdkitintegration.py'
2024-05-10T12:02:16,735   adding 'moleculekit/readers.py'
2024-05-10T12:02:17,337   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:17,648   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:17,660   adding 'moleculekit/util.py'
2024-05-10T12:02:17,662   adding 'moleculekit/version.py'
2024-05-10T12:02:17,663   adding 'moleculekit/viewer.py'
2024-05-10T12:02:17,665   adding 'moleculekit/vmd_wrapper'
2024-05-10T12:02:17,667   adding 'moleculekit/vmdgraphics.py'
2024-05-10T12:02:17,669   adding 'moleculekit/vmdviewer.py'
2024-05-10T12:02:17,921   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:17,935   adding 'moleculekit/writers.py'
2024-05-10T12:02:18,202   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:18,212   adding 'moleculekit/atomselect/__init__.py'
2024-05-10T12:02:18,213   adding 'moleculekit/atomselect/analyze.py'
2024-05-10T12:02:18,215   adding 'moleculekit/atomselect/atomselect.py'
2024-05-10T12:02:18,217   adding 'moleculekit/atomselect/languageparser.py'
2024-05-10T12:02:18,321   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-05-10T12:02:18,332   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-05-10T12:02:18,424   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-05-10T12:02:18,433   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-05-10T12:02:18,522   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-05-10T12:02:18,531   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-05-10T12:02:18,634   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-05-10T12:02:18,644   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-05-10T12:02:18,646   adding 'moleculekit/fileformats/__init__.py'
2024-05-10T12:02:18,651   adding 'moleculekit/fileformats/netcdf.py'
2024-05-10T12:02:18,653   adding 'moleculekit/fileformats/utils.py'
2024-05-10T12:02:18,714   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-05-10T12:02:18,721   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-05-10T12:02:18,722   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-05-10T12:02:18,724   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-05-10T12:02:18,725   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-05-10T12:02:18,730   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-05-10T12:02:18,732   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-05-10T12:02:18,795   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-05-10T12:02:18,803   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-05-10T12:02:18,805   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-05-10T12:02:18,806   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-05-10T12:02:18,808   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-05-10T12:02:18,810   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-05-10T12:02:18,811   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-05-10T12:02:18,816   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-05-10T12:02:18,822   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-05-10T12:02:18,916   adding 'moleculekit/fileformats/xtc/trr.c'
2024-05-10T12:02:18,928   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-05-10T12:02:18,929   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-05-10T12:02:18,931   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-05-10T12:02:19,020   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-05-10T12:02:19,028   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-05-10T12:02:19,029   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-05-10T12:02:19,031   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-05-10T12:02:19,032   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-05-10T12:02:19,035   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-05-10T12:02:19,036   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-05-10T12:02:19,038   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-05-10T12:02:19,039   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-05-10T12:02:19,041   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-05-10T12:02:19,047   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-05-10T12:02:19,050   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-05-10T12:02:19,051   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-05-10T12:02:19,053   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-05-10T12:02:19,055   adding 'moleculekit/interactions/__init__.py'
2024-05-10T12:02:19,338   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:19,607   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:19,619   adding 'moleculekit/interactions/interactions.py'
2024-05-10T12:02:19,900   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:20,189   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-05-10T12:02:20,291   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-05-10T12:02:20,300   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-05-10T12:02:20,392   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-05-10T12:02:20,401   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-05-10T12:02:20,493   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-05-10T12:02:20,502   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-05-10T12:02:20,595   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-05-10T12:02:20,604   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-05-10T12:02:20,692   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-05-10T12:02:20,700   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-05-10T12:02:20,702   adding 'moleculekit/pdbx/__init__.py'
2024-05-10T12:02:20,705   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-05-10T12:02:20,709   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-05-10T12:02:20,711   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-05-10T12:02:20,712   adding 'moleculekit/pdbx/reader/__init__.py'
2024-05-10T12:02:20,714   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-05-10T12:02:20,716   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-05-10T12:02:20,717   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-05-10T12:02:20,718   adding 'moleculekit/pdbx/tests/__init__.py'
2024-05-10T12:02:20,720   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-05-10T12:02:20,721   adding 'moleculekit/pdbx/writer/__init__.py'
2024-05-10T12:02:20,723   adding 'moleculekit/ply/__init__.py'
2024-05-10T12:02:20,727   adding 'moleculekit/ply/lex.py'
2024-05-10T12:02:20,739   adding 'moleculekit/ply/yacc.py'
2024-05-10T12:02:20,741   adding 'moleculekit/projections/__init__.py'
2024-05-10T12:02:20,743   adding 'moleculekit/projections/metriccoordinate.py'
2024-05-10T12:02:20,747   adding 'moleculekit/projections/metricdihedral.py'
2024-05-10T12:02:20,751   adding 'moleculekit/projections/metricdistance.py'
2024-05-10T12:02:20,753   adding 'moleculekit/projections/metricfluctuation.py'
2024-05-10T12:02:20,755   adding 'moleculekit/projections/metricgyration.py'
2024-05-10T12:02:20,758   adding 'moleculekit/projections/metricplumed2.py'
2024-05-10T12:02:20,760   adding 'moleculekit/projections/metricrmsd.py'
2024-05-10T12:02:20,762   adding 'moleculekit/projections/metricsasa.py'
2024-05-10T12:02:20,764   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-05-10T12:02:20,766   adding 'moleculekit/projections/metricshell.py'
2024-05-10T12:02:20,768   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-05-10T12:02:20,769   adding 'moleculekit/projections/metrictmscore.py'
2024-05-10T12:02:20,770   adding 'moleculekit/projections/projection.py'
2024-05-10T12:02:20,772   adding 'moleculekit/projections/util.py'
2024-05-10T12:02:20,774   adding 'moleculekit/share/ALA.cif'
2024-05-10T12:02:20,775   adding 'moleculekit/share/backbone.cif'
2024-05-10T12:02:22,089   adding 'moleculekit/share/opm_sequences.json'
2024-05-10T12:02:22,174   adding 'moleculekit/share/atomselect/atomselect.json'
2024-05-10T12:02:22,179   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-05-10T12:02:22,180   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-05-10T12:02:22,181   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-05-10T12:02:22,182   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-05-10T12:02:22,184   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-05-10T12:02:22,185   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-05-10T12:02:22,186   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-05-10T12:02:22,187   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-05-10T12:02:22,189   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-05-10T12:02:22,190   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-05-10T12:02:22,191   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-05-10T12:02:22,192   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-05-10T12:02:22,194   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-05-10T12:02:22,195   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-05-10T12:02:22,196   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-05-10T12:02:22,197   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-05-10T12:02:22,198   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-05-10T12:02:22,200   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-05-10T12:02:22,201   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-05-10T12:02:22,202   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-05-10T12:02:22,204   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-05-10T12:02:22,205   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-05-10T12:02:22,206   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-05-10T12:02:22,207   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-05-10T12:02:22,209   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-05-10T12:02:22,210   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-05-10T12:02:22,211   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-05-10T12:02:22,212   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-05-10T12:02:22,214   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-05-10T12:02:22,215   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-05-10T12:02:22,216   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-05-10T12:02:22,217   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-05-10T12:02:22,218   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-05-10T12:02:22,220   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-05-10T12:02:22,221   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-05-10T12:02:22,222   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-05-10T12:02:22,223   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-05-10T12:02:22,225   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-05-10T12:02:22,226   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-05-10T12:02:22,227   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-05-10T12:02:22,229   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-05-10T12:02:22,230   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-05-10T12:02:22,231   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-05-10T12:02:22,232   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-05-10T12:02:22,234   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-05-10T12:02:22,235   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-05-10T12:02:22,236   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-05-10T12:02:22,237   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-05-10T12:02:22,239   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-05-10T12:02:22,240   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-05-10T12:02:22,241   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-05-10T12:02:22,242   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-05-10T12:02:22,243   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-05-10T12:02:22,245   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-05-10T12:02:22,246   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-05-10T12:02:22,247   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-05-10T12:02:22,248   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-05-10T12:02:22,249   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-05-10T12:02:22,251   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-05-10T12:02:22,252   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-05-10T12:02:22,253   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-05-10T12:02:22,254   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-05-10T12:02:22,255   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-05-10T12:02:22,257   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-05-10T12:02:22,258   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-05-10T12:02:22,259   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-05-10T12:02:22,261   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-05-10T12:02:22,262   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-05-10T12:02:22,263   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-05-10T12:02:22,264   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-05-10T12:02:22,265   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-05-10T12:02:22,266   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-05-10T12:02:22,268   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-05-10T12:02:22,269   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-05-10T12:02:22,270   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-05-10T12:02:22,271   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-05-10T12:02:22,273   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-05-10T12:02:22,274   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-05-10T12:02:22,275   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-05-10T12:02:22,276   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-05-10T12:02:22,278   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-05-10T12:02:22,279   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-05-10T12:02:22,280   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-05-10T12:02:22,282   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-05-10T12:02:22,283   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-05-10T12:02:22,284   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-05-10T12:02:22,285   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-05-10T12:02:22,286   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-05-10T12:02:22,288   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-05-10T12:02:22,289   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-05-10T12:02:22,290   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-05-10T12:02:22,291   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-05-10T12:02:22,293   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-05-10T12:02:22,294   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-05-10T12:02:22,295   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-05-10T12:02:22,296   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-05-10T12:02:22,298   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-05-10T12:02:22,299   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-05-10T12:02:22,300   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-05-10T12:02:22,301   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-05-10T12:02:22,302   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-05-10T12:02:22,304   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-05-10T12:02:22,305   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-05-10T12:02:22,306   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-05-10T12:02:22,307   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-05-10T12:02:22,308   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-05-10T12:02:22,310   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-05-10T12:02:22,311   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-05-10T12:02:22,312   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-05-10T12:02:22,313   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-05-10T12:02:22,314   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-05-10T12:02:22,316   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-05-10T12:02:22,317   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-05-10T12:02:22,318   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-05-10T12:02:22,319   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-05-10T12:02:22,320   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-05-10T12:02:22,322   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-05-10T12:02:22,323   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-05-10T12:02:22,324   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-05-10T12:02:22,325   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-05-10T12:02:22,326   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-05-10T12:02:22,328   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-05-10T12:02:22,329   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-05-10T12:02:22,330   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-05-10T12:02:22,331   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-05-10T12:02:22,332   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-05-10T12:02:22,334   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-05-10T12:02:22,335   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-05-10T12:02:22,336   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-05-10T12:02:22,337   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-05-10T12:02:22,338   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-05-10T12:02:22,339   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-05-10T12:02:22,341   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-05-10T12:02:22,342   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-05-10T12:02:22,343   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-05-10T12:02:22,344   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-05-10T12:02:22,345   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-05-10T12:02:22,347   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-05-10T12:02:22,348   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-05-10T12:02:22,349   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-05-10T12:02:22,350   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-05-10T12:02:22,351   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-05-10T12:02:22,353   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-05-10T12:02:22,354   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-05-10T12:02:22,355   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-05-10T12:02:22,356   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-05-10T12:02:22,357   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-05-10T12:02:22,358   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-05-10T12:02:22,360   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-05-10T12:02:22,361   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-05-10T12:02:22,362   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-05-10T12:02:22,363   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-05-10T12:02:22,364   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-05-10T12:02:22,366   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-05-10T12:02:22,367   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-05-10T12:02:22,368   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-05-10T12:02:22,370   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-05-10T12:02:22,371   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-05-10T12:02:22,372   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-05-10T12:02:22,373   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-05-10T12:02:22,374   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-05-10T12:02:22,376   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-05-10T12:02:22,377   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-05-10T12:02:22,378   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-05-10T12:02:22,379   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-05-10T12:02:22,380   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-05-10T12:02:22,382   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-05-10T12:02:22,383   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-05-10T12:02:22,384   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-05-10T12:02:22,385   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-05-10T12:02:22,386   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-05-10T12:02:22,388   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-05-10T12:02:22,389   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-05-10T12:02:22,390   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-05-10T12:02:22,391   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-05-10T12:02:22,393   adding 'moleculekit/smallmol/__init__.py'
2024-05-10T12:02:22,398   adding 'moleculekit/smallmol/smallmol.py'
2024-05-10T12:02:22,400   adding 'moleculekit/smallmol/smallmolcdp.py'
2024-05-10T12:02:22,403   adding 'moleculekit/smallmol/smallmollib.py'
2024-05-10T12:02:22,404   adding 'moleculekit/smallmol/test_smallmol.py'
2024-05-10T12:02:22,406   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-05-10T12:02:22,408   adding 'moleculekit/smallmol/util.py'
2024-05-10T12:02:22,410   adding 'moleculekit/smallmol/tools/__init__.py'
2024-05-10T12:02:22,411   adding 'moleculekit/smallmol/tools/clustering.py'
2024-05-10T12:02:22,413   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-05-10T12:02:22,414   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-05-10T12:02:22,504   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-05-10T12:02:22,513   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-05-10T12:02:22,514   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-05-10T12:02:22,516   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-05-10T12:02:22,533   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-05-10T12:02:22,537   adding 'moleculekit/tools/__init__.py'
2024-05-10T12:02:22,539   adding 'moleculekit/tools/atomtyper.py'
2024-05-10T12:02:22,541   adding 'moleculekit/tools/autosegment.py'
2024-05-10T12:02:22,543   adding 'moleculekit/tools/crystalpacking.py'
2024-05-10T12:02:22,547   adding 'moleculekit/tools/detect.py'
2024-05-10T12:02:22,549   adding 'moleculekit/tools/docking.py'
2024-05-10T12:02:22,551   adding 'moleculekit/tools/graphalignment.py'
2024-05-10T12:02:22,552   adding 'moleculekit/tools/hhblitsprofile.py'
2024-05-10T12:02:22,554   adding 'moleculekit/tools/modelling.py'
2024-05-10T12:02:22,555   adding 'moleculekit/tools/moleculechecks.py'
2024-05-10T12:02:22,562   adding 'moleculekit/tools/preparation.py'
2024-05-10T12:02:22,564   adding 'moleculekit/tools/preparation_customres.py'
2024-05-10T12:02:22,566   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-05-10T12:02:22,569   adding 'moleculekit/tools/voxeldescriptors.py'
2024-05-10T12:02:22,571   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-05-10T12:02:22,573   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-05-10T12:02:22,665   adding 'moleculekit/wrapping/wrapping.cpp'
2024-05-10T12:02:22,674   adding 'moleculekit/wrapping/wrapping.pyx'
2024-05-10T12:02:22,676   adding 'moleculekit-1.8.32.dist-info/LICENSE'
2024-05-10T12:02:22,677   adding 'moleculekit-1.8.32.dist-info/METADATA'
2024-05-10T12:02:22,679   adding 'moleculekit-1.8.32.dist-info/WHEEL'
2024-05-10T12:02:22,679   adding 'moleculekit-1.8.32.dist-info/top_level.txt'
2024-05-10T12:02:22,685   adding 'moleculekit-1.8.32.dist-info/RECORD'
2024-05-10T12:02:22,850   removing build/bdist.linux-armv7l/wheel
2024-05-10T12:02:23,132   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-05-10T12:02:23,446   Created wheel for moleculekit: filename=moleculekit-1.8.32-cp39-cp39-linux_armv7l.whl size=14905337 sha256=088f285bb9579634e6a88a6ce995af058e2091f60ca38a9a71b19acea17e339b
2024-05-10T12:02:23,447   Stored in directory: /tmp/pip-ephem-wheel-cache-zmmv29i7/wheels/1a/ff/af/d3dfd847be9bfbf9b5510ee683473fb8a5d84da4a6fff6d10f
2024-05-10T12:02:23,475 Successfully built moleculekit
2024-05-10T12:02:23,819 Removed build tracker: '/tmp/pip-build-tracker-mlpo9wa5'