2024-05-10T22:18:50,455 Created temporary directory: /tmp/pip-build-tracker-1h6egzdj 2024-05-10T22:18:50,457 Initialized build tracking at /tmp/pip-build-tracker-1h6egzdj 2024-05-10T22:18:50,457 Created build tracker: /tmp/pip-build-tracker-1h6egzdj 2024-05-10T22:18:50,457 Entered build tracker: /tmp/pip-build-tracker-1h6egzdj 2024-05-10T22:18:50,458 Created temporary directory: /tmp/pip-wheel-9h3apdtq 2024-05-10T22:18:50,462 Created temporary directory: /tmp/pip-ephem-wheel-cache-34r9gaul 2024-05-10T22:18:50,490 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-10T22:18:50,493 2 location(s) to search for versions of cryodrgn: 2024-05-10T22:18:50,493 * https://pypi.org/simple/cryodrgn/ 2024-05-10T22:18:50,493 * https://www.piwheels.org/simple/cryodrgn/ 2024-05-10T22:18:50,494 Fetching project page and analyzing links: https://pypi.org/simple/cryodrgn/ 2024-05-10T22:18:50,495 Getting page https://pypi.org/simple/cryodrgn/ 2024-05-10T22:18:50,496 Found index url https://pypi.org/simple/ 2024-05-10T22:18:50,550 Fetched page https://pypi.org/simple/cryodrgn/ as application/vnd.pypi.simple.v1+json 2024-05-10T22:18:50,556 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/8a/25/80e82244484accc834ed1099716c35b78cc322e2270f9a3558ff5898ebbb/cryodrgn-0.20.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9) 2024-05-10T22:18:50,557 Found link https://files.pythonhosted.org/packages/23/84/71a084cba49c7d679bd4d7d1e53a3ca89972b787b89446d726c38bcc74a0/cryodrgn-0.20.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 0.20.0 2024-05-10T22:18:50,557 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/50/91/1306b78002812cfa9932e2691070f765b75d4385e4bbf559d211a4e71025/cryodrgn-1.1.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,558 Found link https://files.pythonhosted.org/packages/24/08/8de601e5f4fe8a5177c4191c0be1848d2952dad0ef149820aadadbee2e08/cryodrgn-1.1.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 1.1.1 2024-05-10T22:18:50,558 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/e9/78/bdf1fd8d9394a0025206a4d1478b21170d7392e35132522c5ef87855fe73/cryodrgn-2.1.0b5-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,559 Found link https://files.pythonhosted.org/packages/68/26/6669e39abe77e36bd49d1f21f68ed04961bdd0a76f909b497c96ce78b60b/cryodrgn-2.1.0b5.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.1.0b5 2024-05-10T22:18:50,559 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7d/d8/dae369c30a1b908f5713f7b46f4948aed0253f9e7e124c98e6c7b15d7e57/cryodrgn-2.2.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,560 Found link https://files.pythonhosted.org/packages/6f/19/b950e5eb7a6d3c8d122bec56e59c447d3585a660a7605112a5346816014e/cryodrgn-2.2.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0b0 2024-05-10T22:18:50,560 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/6d/79/97a3f0118ef0c156bf5eaf931f4a5855a5c5d27dedd04aaa0bcf57fe1f7c/cryodrgn-2.2.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,560 Found link https://files.pythonhosted.org/packages/03/50/3259e1a4efc92c945d1ae88fd5765a0ba4db77f0a742fc0e0a206cd781ac/cryodrgn-2.2.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0 2024-05-10T22:18:50,561 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/03/29/f9750c89414937c8700d9d5aa167d9ed1e3157ebb6a9971effb4bcbe8bec/cryodrgn-2.3.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,561 Found link https://files.pythonhosted.org/packages/d2/69/c5d8c6da2da86575a985307f67f214a0f56a7f79d73492a5184170ea7036/cryodrgn-2.3.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.3.0 2024-05-10T22:18:50,562 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/08/8d/d0ff2954b5825e3b771a943b40423d57195aec5c30d4b770250ac822c7fe/cryodrgn-3.0.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,562 Found link https://files.pythonhosted.org/packages/74/92/6ca0ee245ed52438a0f471cfb29de766b9822010f760da08875be946e827/cryodrgn-3.0.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.0b0 2024-05-10T22:18:50,562 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/ec/e4/6ed8adf3e7b526a69e850b7e5d1b7f6fceede2b3683b35c81944321149a7/cryodrgn-3.0.1b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,563 Found link https://files.pythonhosted.org/packages/9d/05/4215fddb0e1cce3525690435efa36cef19ad50c1808b1d48771ea3b7ff37/cryodrgn-3.0.1b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.1b0 2024-05-10T22:18:50,563 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/f4/5b/054660b4368ce3eaf45f8301c941cf2e5ee0ba92b1f76dd1503c64d9d156/cryodrgn-3.1.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,564 Found link https://files.pythonhosted.org/packages/fa/81/02d79980623ec3e72fe0a381ab2953b96b71bcd81937ff54943dd2c85054/cryodrgn-3.1.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.1.0b0 2024-05-10T22:18:50,564 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7b/90/4d4442c4ef959de675c6815995a483c1da8c840ce73da4a2208463548db7/cryodrgn-3.2.0a0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-05-10T22:18:50,565 Found link https://files.pythonhosted.org/packages/f2/8b/00d75ab0c8fb63f1bf59c2322d38b3e63c79882cfc9071792af0800b9c8c/cryodrgn-3.2.0a0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0a0 2024-05-10T22:18:50,565 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/06/24/d655857f07fcb5600f36cec129e365e86492b0a97de029b99f3d83615f5d/cryodrgn-3.2.0a1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-05-10T22:18:50,566 Found link https://files.pythonhosted.org/packages/3d/7e/6f69becd5004ad87380939fd7438a730a9a723a76012e918731f58e8355c/cryodrgn-3.2.0a1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0a1 2024-05-10T22:18:50,566 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/f6/33/67c3f1227b7798d9cade4a14dd8a16aaa0d537531f6e41d9d11b30c2895c/cryodrgn-3.2.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-05-10T22:18:50,567 Found link https://files.pythonhosted.org/packages/d8/29/f6b3a3cb3463d56218319de48999e2cc281499e3afa8505f495ac1d4c201/cryodrgn-3.2.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7), version: 3.2.0b0 2024-05-10T22:18:50,567 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/8c/8b/d004a4dc6b3825ee4a87d39d1045b34796bbcbbc54bbe5b482f65bac1f6c/cryodrgn-3.3.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9) 2024-05-10T22:18:50,567 Found link https://files.pythonhosted.org/packages/8c/10/8dd0c198e9d986f1e36223c0238383b7ca634ad291169161d9837f811507/cryodrgn-3.3.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 3.3.0 2024-05-10T22:18:50,568 Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/18/25/05730115709d6be465fbf4244c80bcaa30358b2d5ddaa5f513f12d324db0/cryodrgn-3.3.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9) 2024-05-10T22:18:50,568 Found link https://files.pythonhosted.org/packages/18/9a/1d5ddedf2a40765bf9050569ae86865b7567931278e33118f3780f3efaf3/cryodrgn-3.3.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9), version: 3.3.1 2024-05-10T22:18:50,569 Fetching project page and analyzing links: https://www.piwheels.org/simple/cryodrgn/ 2024-05-10T22:18:50,569 Getting page https://www.piwheels.org/simple/cryodrgn/ 2024-05-10T22:18:50,570 Found index url https://www.piwheels.org/simple/ 2024-05-10T22:18:50,719 Fetched page https://www.piwheels.org/simple/cryodrgn/ as text/html 2024-05-10T22:18:50,724 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.3.1-py3-none-any.whl#sha256=647299cf3549465b1c2b7296e0c48b83e6208d693322dabfa10b5918d4f09358 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9) 2024-05-10T22:18:50,725 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.3.0-py3-none-any.whl#sha256=8aae2a2c492aa891d21c236a7fbf48e454224d80748853e92d58f624f2bee91a (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.9) 2024-05-10T22:18:50,725 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0b0-py3-none-any.whl#sha256=9be035b539a141bdf9a3a5e223ab2d5eac88e2e8342e4fbdf2aa106b91dd220b (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-05-10T22:18:50,725 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0a1-py3-none-any.whl#sha256=a23e8245ce860c4122cef6f81db6fe3918ab253dab52b10afd0e4f65d9428b3e (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-05-10T22:18:50,725 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.2.0a0-py3-none-any.whl#sha256=ea2d2f810968f04912365abdce1cf74f011e1b5be2b671a741a705ef827f2d4a (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:<3.11,>=3.7) 2024-05-10T22:18:50,725 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.1.0b0-py3-none-any.whl#sha256=929d0ff6af693745b3d438a6e7462cc2845e60d49457cd383b6b17b01778017c (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,726 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.0.1b0-py3-none-any.whl#sha256=c5aa67408ca576f776a9b8a331b966eb87343cb2d3713e29768705555e85f930 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,726 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-3.0.0b0-py3-none-any.whl#sha256=498fba8644092d42d124e88b81d7209e358d25ea05720b664bd44c454eb221a2 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,726 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.3.0-py3-none-any.whl#sha256=d3f519ed4819eac7456ccee2c974e41070b80d0e895797cf940ea8b8ca729631 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,726 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0-py3-none-any.whl#sha256=6d705695a229d236db29c0b847f18e336bc53358ef3bc125cb158bd743f53bc9 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,726 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0b0-py3-none-any.whl#sha256=ded8ccf2e343961488fc50ee73479e8c5a9bc61dd79a83f509f96e86c01e9306 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,727 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.1.0b5-py3-none-any.whl#sha256=f43221397e48ac64c02c3009e927ea1212a8ad59ed1e20421a65287c9e853652 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,727 Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-1.1.1-py3-none-any.whl#sha256=b3cc3928fe1cc0f347265449cd329a61f3b7eadb9f833c26748b681c220cb4ad (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7) 2024-05-10T22:18:50,727 Skipping link: not a file: https://www.piwheels.org/simple/cryodrgn/ 2024-05-10T22:18:50,727 Skipping link: not a file: https://pypi.org/simple/cryodrgn/ 2024-05-10T22:18:50,746 Given no hashes to check 1 links for project 'cryodrgn': discarding no candidates 2024-05-10T22:18:50,763 Collecting cryodrgn==0.20.0 2024-05-10T22:18:50,765 Created temporary directory: /tmp/pip-unpack-oqwu5nir 2024-05-10T22:18:55,956 Downloading cryodrgn-0.20.0.tar.gz (37.4 MB) 2024-05-10T22:19:05,608 Added cryodrgn==0.20.0 from https://files.pythonhosted.org/packages/23/84/71a084cba49c7d679bd4d7d1e53a3ca89972b787b89446d726c38bcc74a0/cryodrgn-0.20.0.tar.gz to build tracker '/tmp/pip-build-tracker-1h6egzdj' 2024-05-10T22:19:05,618 Created temporary directory: /tmp/pip-build-env-x3x3x43_ 2024-05-10T22:19:05,633 Installing build dependencies: started 2024-05-10T22:19:05,634 Running command pip subprocess to install build dependencies 2024-05-10T22:19:06,817 Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2024-05-10T22:19:07,330 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-10T22:19:09,023 Collecting setuptools>=61.0 2024-05-10T22:19:09,039 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-10T22:19:09,390 Collecting setuptools_scm>=6.2 2024-05-10T22:19:09,416 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB) 2024-05-10T22:19:09,805 Collecting packaging>=20 (from setuptools_scm>=6.2) 2024-05-10T22:19:09,821 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-05-10T22:19:09,956 Collecting typing-extensions (from setuptools_scm>=6.2) 2024-05-10T22:19:09,975 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.11.0-py3-none-any.whl (34 kB) 2024-05-10T22:19:10,098 Collecting tomli>=1 (from setuptools_scm>=6.2) 2024-05-10T22:19:10,114 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2024-05-10T22:19:11,848 Installing collected packages: typing-extensions, tomli, setuptools, packaging, setuptools_scm 2024-05-10T22:19:14,781 Successfully installed packaging-24.0 setuptools-69.5.1 setuptools_scm-8.1.0 tomli-2.0.1 typing-extensions-4.11.0 2024-05-10T22:19:15,242 Installing build dependencies: finished with status 'done' 2024-05-10T22:19:15,250 Getting requirements to build wheel: started 2024-05-10T22:19:15,251 Running command Getting requirements to build wheel 2024-05-10T22:19:16,186 running egg_info 2024-05-10T22:19:16,192 writing cryodrgn.egg-info/PKG-INFO 2024-05-10T22:19:16,200 writing dependency_links to cryodrgn.egg-info/dependency_links.txt 2024-05-10T22:19:16,202 writing entry points to cryodrgn.egg-info/entry_points.txt 2024-05-10T22:19:16,206 writing requirements to cryodrgn.egg-info/requires.txt 2024-05-10T22:19:16,207 writing top-level names to cryodrgn.egg-info/top_level.txt 2024-05-10T22:19:16,258 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-10T22:19:16,266 reading manifest file 'cryodrgn.egg-info/SOURCES.txt' 2024-05-10T22:19:16,275 reading manifest template 'MANIFEST.in' 2024-05-10T22:19:16,277 adding license file 'LICENSE.txt' 2024-05-10T22:19:16,290 writing manifest file 'cryodrgn.egg-info/SOURCES.txt' 2024-05-10T22:19:16,402 Getting requirements to build wheel: finished with status 'done' 2024-05-10T22:19:16,416 Installing backend dependencies: started 2024-05-10T22:19:16,417 Running command pip subprocess to install backend dependencies 2024-05-10T22:19:17,589 Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2024-05-10T22:19:18,098 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-10T22:19:18,549 Collecting wheel 2024-05-10T22:19:18,782 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-10T22:19:20,252 Installing collected packages: wheel 2024-05-10T22:19:20,479 Creating /tmp/pip-build-env-x3x3x43_/normal/bin 2024-05-10T22:19:20,481 changing mode of /tmp/pip-build-env-x3x3x43_/normal/bin/wheel to 755 2024-05-10T22:19:20,495 Successfully installed wheel-0.43.0 2024-05-10T22:19:20,877 Installing backend dependencies: finished with status 'done' 2024-05-10T22:19:20,880 Created temporary directory: /tmp/pip-modern-metadata-9az5fqx2 2024-05-10T22:19:20,882 Preparing metadata (pyproject.toml): started 2024-05-10T22:19:20,883 Running command Preparing metadata (pyproject.toml) 2024-05-10T22:19:21,837 running dist_info 2024-05-10T22:19:21,846 creating /tmp/pip-modern-metadata-9az5fqx2/cryodrgn.egg-info 2024-05-10T22:19:21,852 writing /tmp/pip-modern-metadata-9az5fqx2/cryodrgn.egg-info/PKG-INFO 2024-05-10T22:19:21,862 writing dependency_links to /tmp/pip-modern-metadata-9az5fqx2/cryodrgn.egg-info/dependency_links.txt 2024-05-10T22:19:21,864 writing entry points to /tmp/pip-modern-metadata-9az5fqx2/cryodrgn.egg-info/entry_points.txt 2024-05-10T22:19:21,868 writing requirements to /tmp/pip-modern-metadata-9az5fqx2/cryodrgn.egg-info/requires.txt 2024-05-10T22:19:21,869 writing top-level names to /tmp/pip-modern-metadata-9az5fqx2/cryodrgn.egg-info/top_level.txt 2024-05-10T22:19:21,871 writing manifest file '/tmp/pip-modern-metadata-9az5fqx2/cryodrgn.egg-info/SOURCES.txt' 2024-05-10T22:19:21,919 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-10T22:19:21,927 reading manifest file '/tmp/pip-modern-metadata-9az5fqx2/cryodrgn.egg-info/SOURCES.txt' 2024-05-10T22:19:21,930 reading manifest template 'MANIFEST.in' 2024-05-10T22:19:21,932 adding license file 'LICENSE.txt' 2024-05-10T22:19:21,951 writing manifest file '/tmp/pip-modern-metadata-9az5fqx2/cryodrgn.egg-info/SOURCES.txt' 2024-05-10T22:19:21,953 creating '/tmp/pip-modern-metadata-9az5fqx2/cryodrgn-0.20.0.dist-info' 2024-05-10T22:19:22,120 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-10T22:19:22,128 Source in /tmp/pip-wheel-9h3apdtq/cryodrgn_acce213a9d0b4163b5ec8cad584de292 has version 0.20.0, which satisfies requirement cryodrgn==0.20.0 from https://files.pythonhosted.org/packages/23/84/71a084cba49c7d679bd4d7d1e53a3ca89972b787b89446d726c38bcc74a0/cryodrgn-0.20.0.tar.gz 2024-05-10T22:19:22,129 Removed cryodrgn==0.20.0 from https://files.pythonhosted.org/packages/23/84/71a084cba49c7d679bd4d7d1e53a3ca89972b787b89446d726c38bcc74a0/cryodrgn-0.20.0.tar.gz from build tracker '/tmp/pip-build-tracker-1h6egzdj' 2024-05-10T22:19:22,138 Created temporary directory: /tmp/pip-unpack-2rfnmywy 2024-05-10T22:19:22,138 Created temporary directory: /tmp/pip-unpack-gcqzp_b6 2024-05-10T22:19:22,183 Building wheels for collected packages: cryodrgn 2024-05-10T22:19:22,187 Created temporary directory: /tmp/pip-wheel-hd14uy3o 2024-05-10T22:19:22,187 Destination directory: /tmp/pip-wheel-hd14uy3o 2024-05-10T22:19:22,190 Building wheel for cryodrgn (pyproject.toml): started 2024-05-10T22:19:22,191 Running command Building wheel for cryodrgn (pyproject.toml) 2024-05-10T22:19:23,078 running bdist_wheel 2024-05-10T22:19:23,107 running build 2024-05-10T22:19:23,107 running build_py 2024-05-10T22:19:23,114 creating build 2024-05-10T22:19:23,115 creating build/lib 2024-05-10T22:19:23,115 creating build/lib/cryodrgn 2024-05-10T22:19:23,116 copying cryodrgn/mrc.py -> build/lib/cryodrgn 2024-05-10T22:19:23,119 copying cryodrgn/beta_schedule.py -> build/lib/cryodrgn 2024-05-10T22:19:23,120 copying cryodrgn/_version.py -> build/lib/cryodrgn 2024-05-10T22:19:23,122 copying cryodrgn/pose_search.py -> build/lib/cryodrgn 2024-05-10T22:19:23,124 copying cryodrgn/utils.py -> build/lib/cryodrgn 2024-05-10T22:19:23,126 copying cryodrgn/config.py -> build/lib/cryodrgn 2024-05-10T22:19:23,128 copying cryodrgn/lattice.py -> build/lib/cryodrgn 2024-05-10T22:19:23,130 copying cryodrgn/command_line.py -> build/lib/cryodrgn 2024-05-10T22:19:23,132 copying cryodrgn/ctf.py -> build/lib/cryodrgn 2024-05-10T22:19:23,134 copying cryodrgn/source.py -> build/lib/cryodrgn 2024-05-10T22:19:23,136 copying cryodrgn/pose.py -> build/lib/cryodrgn 2024-05-10T22:19:23,138 copying cryodrgn/make_healpy.py -> build/lib/cryodrgn 2024-05-10T22:19:23,140 copying cryodrgn/fft.py -> build/lib/cryodrgn 2024-05-10T22:19:23,141 copying cryodrgn/shift_grid3.py -> build/lib/cryodrgn 2024-05-10T22:19:23,143 copying cryodrgn/analysis.py -> build/lib/cryodrgn 2024-05-10T22:19:23,145 copying cryodrgn/starfile.py -> build/lib/cryodrgn 2024-05-10T22:19:23,147 copying cryodrgn/losses.py -> build/lib/cryodrgn 2024-05-10T22:19:23,149 copying cryodrgn/dataset.py -> build/lib/cryodrgn 2024-05-10T22:19:23,152 copying cryodrgn/so3_grid.py -> build/lib/cryodrgn 2024-05-10T22:19:23,153 copying cryodrgn/__init__.py -> build/lib/cryodrgn 2024-05-10T22:19:23,155 copying cryodrgn/lie_tools.py -> build/lib/cryodrgn 2024-05-10T22:19:23,157 copying cryodrgn/models.py -> build/lib/cryodrgn 2024-05-10T22:19:23,160 copying cryodrgn/shift_grid.py -> build/lib/cryodrgn 2024-05-10T22:19:23,163 creating build/lib/cryodrgn/commands 2024-05-10T22:19:23,164 copying cryodrgn/commands/analyze_landscape_full.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,166 copying cryodrgn/commands/eval_images.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,169 copying cryodrgn/commands/graph_traversal.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,171 copying cryodrgn/commands/analyze_landscape.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,173 copying cryodrgn/commands/backproject_voxel.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,175 copying cryodrgn/commands/downsample.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,177 copying cryodrgn/commands/abinit_homo.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,180 copying cryodrgn/commands/parse_pose_csparc.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,181 copying cryodrgn/commands/eval_vol.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,184 copying cryodrgn/commands/filter.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,186 copying cryodrgn/commands/direct_traversal.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,187 copying cryodrgn/commands/train_vae.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,190 copying cryodrgn/commands/train_nn.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,192 copying cryodrgn/commands/parse_ctf_star.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,194 copying cryodrgn/commands/parse_ctf_csparc.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,196 copying cryodrgn/commands/view_config.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,198 copying cryodrgn/commands/parse_pose_star.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,200 copying cryodrgn/commands/analyze.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,202 copying cryodrgn/commands/pc_traversal.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,204 copying cryodrgn/commands/preprocess.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,206 copying cryodrgn/commands/__init__.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,207 copying cryodrgn/commands/abinit_het.py -> build/lib/cryodrgn/commands 2024-05-10T22:19:23,211 creating build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,212 copying cryodrgn/commands_utils/write_star.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,215 copying cryodrgn/commands_utils/add_psize.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,217 copying cryodrgn/commands_utils/invert_contrast.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,218 copying cryodrgn/commands_utils/plot_fsc.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,220 copying cryodrgn/commands_utils/gen_mask.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,222 copying cryodrgn/commands_utils/concat_pkls.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,223 copying cryodrgn/commands_utils/filter_pkl.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,225 copying cryodrgn/commands_utils/view_mrcs.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,226 copying cryodrgn/commands_utils/translate_mrcs.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,228 copying cryodrgn/commands_utils/view_header.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,230 copying cryodrgn/commands_utils/view_cs_header.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,232 copying cryodrgn/commands_utils/fsc.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,233 copying cryodrgn/commands_utils/filter_mrcs.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,235 copying cryodrgn/commands_utils/select_random.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,237 copying cryodrgn/commands_utils/clean.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,239 copying cryodrgn/commands_utils/phase_flip.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,241 copying cryodrgn/commands_utils/select_clusters.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,243 copying cryodrgn/commands_utils/write_cs.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,245 copying cryodrgn/commands_utils/flip_hand.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,246 copying cryodrgn/commands_utils/__init__.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,248 copying cryodrgn/commands_utils/filter_star.py -> build/lib/cryodrgn/commands_utils 2024-05-10T22:19:23,249 running egg_info 2024-05-10T22:19:23,255 writing cryodrgn.egg-info/PKG-INFO 2024-05-10T22:19:23,262 writing dependency_links to cryodrgn.egg-info/dependency_links.txt 2024-05-10T22:19:23,264 writing entry points to cryodrgn.egg-info/entry_points.txt 2024-05-10T22:19:23,268 writing requirements to cryodrgn.egg-info/requires.txt 2024-05-10T22:19:23,269 writing top-level names to cryodrgn.egg-info/top_level.txt 2024-05-10T22:19:23,308 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-10T22:19:23,316 reading manifest file 'cryodrgn.egg-info/SOURCES.txt' 2024-05-10T22:19:23,354 reading manifest template 'MANIFEST.in' 2024-05-10T22:19:23,356 adding license file 'LICENSE.txt' 2024-05-10T22:19:23,369 writing manifest file 'cryodrgn.egg-info/SOURCES.txt' 2024-05-10T22:19:23,383 copying cryodrgn/healpy_grid.json -> build/lib/cryodrgn 2024-05-10T22:19:23,607 creating build/lib/cryodrgn/templates 2024-05-10T22:19:23,608 copying cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/lib/cryodrgn/templates 2024-05-10T22:19:23,611 copying cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/lib/cryodrgn/templates 2024-05-10T22:19:23,614 copying cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/lib/cryodrgn/templates 2024-05-10T22:19:23,617 copying cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/lib/cryodrgn/templates 2024-05-10T22:19:23,620 copying cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/lib/cryodrgn/templates 2024-05-10T22:19:23,637 installing to build/bdist.linux-armv7l/wheel 2024-05-10T22:19:23,638 running install 2024-05-10T22:19:23,664 running install_lib 2024-05-10T22:19:23,670 creating build/bdist.linux-armv7l 2024-05-10T22:19:23,670 creating build/bdist.linux-armv7l/wheel 2024-05-10T22:19:23,672 creating build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,673 copying build/lib/cryodrgn/mrc.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,676 copying build/lib/cryodrgn/beta_schedule.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,678 copying build/lib/cryodrgn/_version.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,680 creating build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-05-10T22:19:23,681 copying build/lib/cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-05-10T22:19:23,684 copying build/lib/cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-05-10T22:19:23,686 copying build/lib/cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-05-10T22:19:23,688 copying build/lib/cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-05-10T22:19:23,691 copying build/lib/cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates 2024-05-10T22:19:23,693 copying build/lib/cryodrgn/pose_search.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,696 copying build/lib/cryodrgn/utils.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,698 copying build/lib/cryodrgn/config.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,700 copying build/lib/cryodrgn/lattice.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,703 copying build/lib/cryodrgn/command_line.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,704 copying build/lib/cryodrgn/ctf.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,706 copying build/lib/cryodrgn/source.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,710 creating build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,711 copying build/lib/cryodrgn/commands/analyze_landscape_full.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,713 copying build/lib/cryodrgn/commands/eval_images.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,715 copying build/lib/cryodrgn/commands/graph_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,718 copying build/lib/cryodrgn/commands/analyze_landscape.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,720 copying build/lib/cryodrgn/commands/backproject_voxel.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,723 copying build/lib/cryodrgn/commands/downsample.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,725 copying build/lib/cryodrgn/commands/abinit_homo.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,727 copying build/lib/cryodrgn/commands/parse_pose_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,729 copying build/lib/cryodrgn/commands/eval_vol.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,731 copying build/lib/cryodrgn/commands/filter.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,734 copying build/lib/cryodrgn/commands/direct_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,736 copying build/lib/cryodrgn/commands/train_vae.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,739 copying build/lib/cryodrgn/commands/train_nn.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,741 copying build/lib/cryodrgn/commands/parse_ctf_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,743 copying build/lib/cryodrgn/commands/parse_ctf_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,745 copying build/lib/cryodrgn/commands/view_config.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,747 copying build/lib/cryodrgn/commands/parse_pose_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,748 copying build/lib/cryodrgn/commands/analyze.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,751 copying build/lib/cryodrgn/commands/pc_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,753 copying build/lib/cryodrgn/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,755 copying build/lib/cryodrgn/commands/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,756 copying build/lib/cryodrgn/commands/abinit_het.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands 2024-05-10T22:19:23,759 copying build/lib/cryodrgn/pose.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,761 copying build/lib/cryodrgn/make_healpy.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,763 copying build/lib/cryodrgn/fft.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,765 copying build/lib/cryodrgn/shift_grid3.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,766 copying build/lib/cryodrgn/analysis.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:23,769 copying build/lib/cryodrgn/healpy_grid.json -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:24,327 copying build/lib/cryodrgn/starfile.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:24,330 copying build/lib/cryodrgn/losses.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:24,333 copying build/lib/cryodrgn/dataset.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:24,336 copying build/lib/cryodrgn/so3_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:24,340 creating build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,341 copying build/lib/cryodrgn/commands_utils/write_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,345 copying build/lib/cryodrgn/commands_utils/add_psize.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,348 copying build/lib/cryodrgn/commands_utils/invert_contrast.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,351 copying build/lib/cryodrgn/commands_utils/plot_fsc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,354 copying build/lib/cryodrgn/commands_utils/gen_mask.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,359 copying build/lib/cryodrgn/commands_utils/concat_pkls.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,362 copying build/lib/cryodrgn/commands_utils/filter_pkl.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,366 copying build/lib/cryodrgn/commands_utils/view_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,368 copying build/lib/cryodrgn/commands_utils/translate_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,371 copying build/lib/cryodrgn/commands_utils/view_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,374 copying build/lib/cryodrgn/commands_utils/view_cs_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,376 copying build/lib/cryodrgn/commands_utils/fsc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,379 copying build/lib/cryodrgn/commands_utils/filter_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,381 copying build/lib/cryodrgn/commands_utils/select_random.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,383 copying build/lib/cryodrgn/commands_utils/clean.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,386 copying build/lib/cryodrgn/commands_utils/phase_flip.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,389 copying build/lib/cryodrgn/commands_utils/select_clusters.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,391 copying build/lib/cryodrgn/commands_utils/write_cs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,394 copying build/lib/cryodrgn/commands_utils/flip_hand.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,396 copying build/lib/cryodrgn/commands_utils/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,398 copying build/lib/cryodrgn/commands_utils/filter_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils 2024-05-10T22:19:24,401 copying build/lib/cryodrgn/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:24,403 copying build/lib/cryodrgn/lie_tools.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:24,406 copying build/lib/cryodrgn/models.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:24,409 copying build/lib/cryodrgn/shift_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn 2024-05-10T22:19:24,412 running install_egg_info 2024-05-10T22:19:24,418 Copying cryodrgn.egg-info to build/bdist.linux-armv7l/wheel/cryodrgn-0.20.0-py3.9.egg-info 2024-05-10T22:19:24,433 running install_scripts 2024-05-10T22:19:24,465 creating build/bdist.linux-armv7l/wheel/cryodrgn-0.20.0.dist-info/WHEEL 2024-05-10T22:19:24,469 creating '/tmp/pip-wheel-hd14uy3o/.tmp-j6w0djj7/cryodrgn-0.20.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-10T22:19:24,472 adding 'cryodrgn/__init__.py' 2024-05-10T22:19:24,474 adding 'cryodrgn/_version.py' 2024-05-10T22:19:24,477 adding 'cryodrgn/analysis.py' 2024-05-10T22:19:24,478 adding 'cryodrgn/beta_schedule.py' 2024-05-10T22:19:24,480 adding 'cryodrgn/command_line.py' 2024-05-10T22:19:24,481 adding 'cryodrgn/config.py' 2024-05-10T22:19:24,483 adding 'cryodrgn/ctf.py' 2024-05-10T22:19:24,486 adding 'cryodrgn/dataset.py' 2024-05-10T22:19:24,487 adding 'cryodrgn/fft.py' 2024-05-10T22:19:25,263 adding 'cryodrgn/healpy_grid.json' 2024-05-10T22:19:25,328 adding 'cryodrgn/lattice.py' 2024-05-10T22:19:25,330 adding 'cryodrgn/lie_tools.py' 2024-05-10T22:19:25,331 adding 'cryodrgn/losses.py' 2024-05-10T22:19:25,332 adding 'cryodrgn/make_healpy.py' 2024-05-10T22:19:25,336 adding 'cryodrgn/models.py' 2024-05-10T22:19:25,338 adding 'cryodrgn/mrc.py' 2024-05-10T22:19:25,340 adding 'cryodrgn/pose.py' 2024-05-10T22:19:25,342 adding 'cryodrgn/pose_search.py' 2024-05-10T22:19:25,343 adding 'cryodrgn/shift_grid.py' 2024-05-10T22:19:25,345 adding 'cryodrgn/shift_grid3.py' 2024-05-10T22:19:25,346 adding 'cryodrgn/so3_grid.py' 2024-05-10T22:19:25,349 adding 'cryodrgn/source.py' 2024-05-10T22:19:25,350 adding 'cryodrgn/starfile.py' 2024-05-10T22:19:25,352 adding 'cryodrgn/utils.py' 2024-05-10T22:19:25,354 adding 'cryodrgn/commands/__init__.py' 2024-05-10T22:19:25,358 adding 'cryodrgn/commands/abinit_het.py' 2024-05-10T22:19:25,361 adding 'cryodrgn/commands/abinit_homo.py' 2024-05-10T22:19:25,364 adding 'cryodrgn/commands/analyze.py' 2024-05-10T22:19:25,367 adding 'cryodrgn/commands/analyze_landscape.py' 2024-05-10T22:19:25,369 adding 'cryodrgn/commands/analyze_landscape_full.py' 2024-05-10T22:19:25,371 adding 'cryodrgn/commands/backproject_voxel.py' 2024-05-10T22:19:25,372 adding 'cryodrgn/commands/direct_traversal.py' 2024-05-10T22:19:25,374 adding 'cryodrgn/commands/downsample.py' 2024-05-10T22:19:25,376 adding 'cryodrgn/commands/eval_images.py' 2024-05-10T22:19:25,378 adding 'cryodrgn/commands/eval_vol.py' 2024-05-10T22:19:25,380 adding 'cryodrgn/commands/filter.py' 2024-05-10T22:19:25,382 adding 'cryodrgn/commands/graph_traversal.py' 2024-05-10T22:19:25,383 adding 'cryodrgn/commands/parse_ctf_csparc.py' 2024-05-10T22:19:25,385 adding 'cryodrgn/commands/parse_ctf_star.py' 2024-05-10T22:19:25,386 adding 'cryodrgn/commands/parse_pose_csparc.py' 2024-05-10T22:19:25,388 adding 'cryodrgn/commands/parse_pose_star.py' 2024-05-10T22:19:25,389 adding 'cryodrgn/commands/pc_traversal.py' 2024-05-10T22:19:25,391 adding 'cryodrgn/commands/preprocess.py' 2024-05-10T22:19:25,393 adding 'cryodrgn/commands/train_nn.py' 2024-05-10T22:19:25,397 adding 'cryodrgn/commands/train_vae.py' 2024-05-10T22:19:25,399 adding 'cryodrgn/commands/view_config.py' 2024-05-10T22:19:25,401 adding 'cryodrgn/commands_utils/__init__.py' 2024-05-10T22:19:25,402 adding 'cryodrgn/commands_utils/add_psize.py' 2024-05-10T22:19:25,404 adding 'cryodrgn/commands_utils/clean.py' 2024-05-10T22:19:25,405 adding 'cryodrgn/commands_utils/concat_pkls.py' 2024-05-10T22:19:25,406 adding 'cryodrgn/commands_utils/filter_mrcs.py' 2024-05-10T22:19:25,408 adding 'cryodrgn/commands_utils/filter_pkl.py' 2024-05-10T22:19:25,409 adding 'cryodrgn/commands_utils/filter_star.py' 2024-05-10T22:19:25,410 adding 'cryodrgn/commands_utils/flip_hand.py' 2024-05-10T22:19:25,412 adding 'cryodrgn/commands_utils/fsc.py' 2024-05-10T22:19:25,413 adding 'cryodrgn/commands_utils/gen_mask.py' 2024-05-10T22:19:25,414 adding 'cryodrgn/commands_utils/invert_contrast.py' 2024-05-10T22:19:25,416 adding 'cryodrgn/commands_utils/phase_flip.py' 2024-05-10T22:19:25,417 adding 'cryodrgn/commands_utils/plot_fsc.py' 2024-05-10T22:19:25,419 adding 'cryodrgn/commands_utils/select_clusters.py' 2024-05-10T22:19:25,420 adding 'cryodrgn/commands_utils/select_random.py' 2024-05-10T22:19:25,421 adding 'cryodrgn/commands_utils/translate_mrcs.py' 2024-05-10T22:19:25,423 adding 'cryodrgn/commands_utils/view_cs_header.py' 2024-05-10T22:19:25,424 adding 'cryodrgn/commands_utils/view_header.py' 2024-05-10T22:19:25,425 adding 'cryodrgn/commands_utils/view_mrcs.py' 2024-05-10T22:19:25,427 adding 'cryodrgn/commands_utils/write_cs.py' 2024-05-10T22:19:25,428 adding 'cryodrgn/commands_utils/write_star.py' 2024-05-10T22:19:25,431 adding 'cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb' 2024-05-10T22:19:25,433 adding 'cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb' 2024-05-10T22:19:25,435 adding 'cryodrgn/templates/cryoDRGN_figures_template.ipynb' 2024-05-10T22:19:25,438 adding 'cryodrgn/templates/cryoDRGN_filtering_template.ipynb' 2024-05-10T22:19:25,440 adding 'cryodrgn/templates/cryoDRGN_viz_template.ipynb' 2024-05-10T22:19:25,447 adding 'cryodrgn-0.20.0.dist-info/LICENSE.txt' 2024-05-10T22:19:25,452 adding 'cryodrgn-0.20.0.dist-info/METADATA' 2024-05-10T22:19:25,454 adding 'cryodrgn-0.20.0.dist-info/WHEEL' 2024-05-10T22:19:25,455 adding 'cryodrgn-0.20.0.dist-info/entry_points.txt' 2024-05-10T22:19:25,456 adding 'cryodrgn-0.20.0.dist-info/top_level.txt' 2024-05-10T22:19:25,458 adding 'cryodrgn-0.20.0.dist-info/RECORD' 2024-05-10T22:19:25,482 removing build/bdist.linux-armv7l/wheel 2024-05-10T22:19:25,633 Building wheel for cryodrgn (pyproject.toml): finished with status 'done' 2024-05-10T22:19:25,661 Created wheel for cryodrgn: filename=cryodrgn-0.20.0-py3-none-any.whl size=1161813 sha256=717a2f51d76e34a261789323999467e1716afd1588ee2b5ab9784100649a0453 2024-05-10T22:19:25,662 Stored in directory: /tmp/pip-ephem-wheel-cache-34r9gaul/wheels/70/25/a6/c7a389e88f13d87224d54b9b46562d00b24017c670121c6880 2024-05-10T22:19:25,680 Successfully built cryodrgn 2024-05-10T22:19:25,721 Removed build tracker: '/tmp/pip-build-tracker-1h6egzdj'