2024-05-11T02:48:42,200 Created temporary directory: /tmp/pip-build-tracker-xoz91kyt 2024-05-11T02:48:42,202 Initialized build tracking at /tmp/pip-build-tracker-xoz91kyt 2024-05-11T02:48:42,202 Created build tracker: /tmp/pip-build-tracker-xoz91kyt 2024-05-11T02:48:42,202 Entered build tracker: /tmp/pip-build-tracker-xoz91kyt 2024-05-11T02:48:42,203 Created temporary directory: /tmp/pip-wheel-j0epqkkg 2024-05-11T02:48:42,206 Created temporary directory: /tmp/pip-ephem-wheel-cache-ewaf3ab1 2024-05-11T02:48:42,228 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-11T02:48:42,231 2 location(s) to search for versions of stcat: 2024-05-11T02:48:42,231 * https://pypi.org/simple/stcat/ 2024-05-11T02:48:42,231 * https://www.piwheels.org/simple/stcat/ 2024-05-11T02:48:42,232 Fetching project page and analyzing links: https://pypi.org/simple/stcat/ 2024-05-11T02:48:42,232 Getting page https://pypi.org/simple/stcat/ 2024-05-11T02:48:42,234 Found index url https://pypi.org/simple/ 2024-05-11T02:48:42,448 Fetched page https://pypi.org/simple/stcat/ as application/vnd.pypi.simple.v1+json 2024-05-11T02:48:42,451 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/dd/d9/7509763cc9a3235091c79b0b4a3a9a415f7b643a68593550ab533d06677d/STCAT-0.2-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,452 Found link https://files.pythonhosted.org/packages/54/ff/46d805ee24659e6c5896441d6a58a39f48af44e54ab5496acf66a564fbc2/STCAT-0.2.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.2 2024-05-11T02:48:42,453 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/a1/c2/622b9f058b24687ff867af676fe1a228e5ce888299d80fb946f23947d90b/STCAT-0.3-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,454 Found link https://files.pythonhosted.org/packages/0a/80/6f95d103fabcc905d1f3752b8df72f6f94bbee03d856fea3b87d6734399e/STCAT-0.3.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.3 2024-05-11T02:48:42,454 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/00/9f/c43fc909bbaa04cc23ab22dce4347ba97041c75509b1ad05cb32208af304/STCAT-0.3.1-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,455 Found link https://files.pythonhosted.org/packages/3d/85/26de4a35d00621ab453aec285423cd2d8dcd8894aed6c104efd051548eb2/STCAT-0.3.1.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.3.1 2024-05-11T02:48:42,456 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/82/30/81637812215bbf231cfcde640e3e9b6d9c2f03ca047ee35e4da2f00451ef/STCAT-0.4-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,457 Found link https://files.pythonhosted.org/packages/b1/2c/d5c45eed6a58face4a30c3d86a73f9ecf36428a3c1dba4e8261ee8b49491/STCAT-0.4.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.4 2024-05-11T02:48:42,458 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/c0/e2/4eb4ba85784764e9f06ff3e3ea3984483797409d9dbb78bac2bc72aefcda/STCAT-0.5-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,459 Found link https://files.pythonhosted.org/packages/63/4b/4c69ba9d101bddf6c744e6b95d7dd1baf70bfdca8f35d5d3d699286c9818/STCAT-0.5.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.5 2024-05-11T02:48:42,459 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/e7/b2/b1b8e75f6dcec052813774bb57b7acb1a6c936c7d63fcb679479a18316be/STCAT-0.6-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,460 Found link https://files.pythonhosted.org/packages/7d/7b/87a75714b463c728a46c3327292c2d1d015c9d5bf420211e3ecffd2181fd/STCAT-0.6.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.6 2024-05-11T02:48:42,461 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/bb/04/4e60aa6ddde3e86b780dd955f7980b3928714e59fa1190456067fac03224/STCAT-0.6.1-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,462 Found link https://files.pythonhosted.org/packages/4d/7c/e989750544d252dd9381db0fe51911b5087ed59d46e531feb3da93bc9a53/STCAT-0.6.1.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.6.1 2024-05-11T02:48:42,463 Fetching project page and analyzing links: https://www.piwheels.org/simple/stcat/ 2024-05-11T02:48:42,464 Getting page https://www.piwheels.org/simple/stcat/ 2024-05-11T02:48:42,465 Found index url https://www.piwheels.org/simple/ 2024-05-11T02:48:42,850 Fetched page https://www.piwheels.org/simple/stcat/ as text/html 2024-05-11T02:48:42,854 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.6-py3-none-any.whl#sha256=6e886c594327fbcd34c1bb9fba6c23b3712cd50b3fbb795ee9d19a785074eb05 (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,855 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.5-py3-none-any.whl#sha256=129d56f002bc386b4039e47de1ecdf4ec194e05e74b03e72f35c4fbbf6003229 (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,855 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.4-py3-none-any.whl#sha256=1fc9535179dab13c6c61b1b6e2fcd1bd257776472eb6c91d94140ae9d3194adb (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,856 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.3.1-py3-none-any.whl#sha256=9222fb8e2c8a9b3ced6fcf927634943d0a8ff963cf28ca70f0f85907bb76dcf2 (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,856 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.3-py3-none-any.whl#sha256=09afd386b49d2f718b124e55b00afc7b12430010014558c7d7df34f006324d19 (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,857 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.2-py3-none-any.whl#sha256=faf26d207bd572f5fad92b52dcd16f0d45056fa51631366657ba80adc9e9f1ff (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-05-11T02:48:42,858 Skipping link: not a file: https://www.piwheels.org/simple/stcat/ 2024-05-11T02:48:42,859 Skipping link: not a file: https://pypi.org/simple/stcat/ 2024-05-11T02:48:42,887 Given no hashes to check 1 links for project 'stcat': discarding no candidates 2024-05-11T02:48:42,911 Collecting stcat==0.6.1 2024-05-11T02:48:42,913 Created temporary directory: /tmp/pip-unpack-rhvch_9o 2024-05-11T02:48:43,125 Downloading STCAT-0.6.1.tar.gz (1.7 MB) 2024-05-11T02:48:43,482 Added stcat==0.6.1 from https://files.pythonhosted.org/packages/4d/7c/e989750544d252dd9381db0fe51911b5087ed59d46e531feb3da93bc9a53/STCAT-0.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-xoz91kyt' 2024-05-11T02:48:43,484 Running setup.py (path:/tmp/pip-wheel-j0epqkkg/stcat_8d66c29d588e4146ad64f565fa9bbbba/setup.py) egg_info for package stcat 2024-05-11T02:48:43,485 Created temporary directory: /tmp/pip-pip-egg-info-xn_woo44 2024-05-11T02:48:43,485 Preparing metadata (setup.py): started 2024-05-11T02:48:43,487 Running command python setup.py egg_info 2024-05-11T02:48:44,558 running egg_info 2024-05-11T02:48:44,559 creating /tmp/pip-pip-egg-info-xn_woo44/STCAT.egg-info 2024-05-11T02:48:44,585 writing /tmp/pip-pip-egg-info-xn_woo44/STCAT.egg-info/PKG-INFO 2024-05-11T02:48:44,588 writing dependency_links to /tmp/pip-pip-egg-info-xn_woo44/STCAT.egg-info/dependency_links.txt 2024-05-11T02:48:44,590 writing requirements to /tmp/pip-pip-egg-info-xn_woo44/STCAT.egg-info/requires.txt 2024-05-11T02:48:44,591 writing top-level names to /tmp/pip-pip-egg-info-xn_woo44/STCAT.egg-info/top_level.txt 2024-05-11T02:48:44,592 writing manifest file '/tmp/pip-pip-egg-info-xn_woo44/STCAT.egg-info/SOURCES.txt' 2024-05-11T02:48:44,674 reading manifest file '/tmp/pip-pip-egg-info-xn_woo44/STCAT.egg-info/SOURCES.txt' 2024-05-11T02:48:44,675 reading manifest template 'MANIFEST.in' 2024-05-11T02:48:44,680 writing manifest file '/tmp/pip-pip-egg-info-xn_woo44/STCAT.egg-info/SOURCES.txt' 2024-05-11T02:48:44,797 Preparing metadata (setup.py): finished with status 'done' 2024-05-11T02:48:44,801 Source in /tmp/pip-wheel-j0epqkkg/stcat_8d66c29d588e4146ad64f565fa9bbbba has version 0.6.1, which satisfies requirement stcat==0.6.1 from https://files.pythonhosted.org/packages/4d/7c/e989750544d252dd9381db0fe51911b5087ed59d46e531feb3da93bc9a53/STCAT-0.6.1.tar.gz 2024-05-11T02:48:44,802 Removed stcat==0.6.1 from https://files.pythonhosted.org/packages/4d/7c/e989750544d252dd9381db0fe51911b5087ed59d46e531feb3da93bc9a53/STCAT-0.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-xoz91kyt' 2024-05-11T02:48:44,807 Created temporary directory: /tmp/pip-unpack-1vzb0wtr 2024-05-11T02:48:44,808 Created temporary directory: /tmp/pip-unpack-eckvt41i 2024-05-11T02:48:44,819 Building wheels for collected packages: stcat 2024-05-11T02:48:44,823 Created temporary directory: /tmp/pip-wheel-lap937gc 2024-05-11T02:48:44,823 Building wheel for stcat (setup.py): started 2024-05-11T02:48:44,825 Destination directory: /tmp/pip-wheel-lap937gc 2024-05-11T02:48:44,825 Running command python setup.py bdist_wheel 2024-05-11T02:48:45,895 running bdist_wheel 2024-05-11T02:48:45,991 running build 2024-05-11T02:48:45,992 running build_py 2024-05-11T02:48:46,019 creating build 2024-05-11T02:48:46,019 creating build/lib 2024-05-11T02:48:46,020 creating build/lib/STCAT 2024-05-11T02:48:46,021 copying STCAT/STCAT.py -> build/lib/STCAT 2024-05-11T02:48:46,024 copying STCAT/annotate.py -> build/lib/STCAT 2024-05-11T02:48:46,027 copying STCAT/models.py -> build/lib/STCAT 2024-05-11T02:48:46,029 copying STCAT/__init__.py -> build/lib/STCAT 2024-05-11T02:48:46,030 copying STCAT/logger.py -> build/lib/STCAT 2024-05-11T02:48:46,032 copying STCAT/classifier.py -> build/lib/STCAT 2024-05-11T02:48:46,034 running egg_info 2024-05-11T02:48:46,092 writing STCAT.egg-info/PKG-INFO 2024-05-11T02:48:46,095 writing dependency_links to STCAT.egg-info/dependency_links.txt 2024-05-11T02:48:46,097 writing requirements to STCAT.egg-info/requires.txt 2024-05-11T02:48:46,098 writing top-level names to STCAT.egg-info/top_level.txt 2024-05-11T02:48:46,126 reading manifest file 'STCAT.egg-info/SOURCES.txt' 2024-05-11T02:48:46,128 reading manifest template 'MANIFEST.in' 2024-05-11T02:48:46,132 writing manifest file 'STCAT.egg-info/SOURCES.txt' 2024-05-11T02:48:46,135 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'STCAT.data' is absent from the `packages` configuration. 2024-05-11T02:48:46,135 !! 2024-05-11T02:48:46,136 ******************************************************************************** 2024-05-11T02:48:46,137 ############################ 2024-05-11T02:48:46,137 # Package would be ignored # 2024-05-11T02:48:46,138 ############################ 2024-05-11T02:48:46,138 Python recognizes 'STCAT.data' as an importable package[^1], 2024-05-11T02:48:46,139 but it is absent from setuptools' `packages` configuration. 2024-05-11T02:48:46,140 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-11T02:48:46,141 package, please make sure that 'STCAT.data' is explicitly added 2024-05-11T02:48:46,141 to the `packages` configuration field. 2024-05-11T02:48:46,143 Alternatively, you can also rely on setuptools' discovery methods 2024-05-11T02:48:46,144 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-11T02:48:46,144 instead of `find_packages(...)`/`find:`). 2024-05-11T02:48:46,146 You can read more about "package discovery" on setuptools documentation page: 2024-05-11T02:48:46,147 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-11T02:48:46,154 If you don't want 'STCAT.data' to be distributed and are 2024-05-11T02:48:46,158 already explicitly excluding 'STCAT.data' via 2024-05-11T02:48:46,159 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-11T02:48:46,159 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-11T02:48:46,160 combination with a more fine grained `package-data` configuration. 2024-05-11T02:48:46,166 You can read more about "package data files" on setuptools documentation page: 2024-05-11T02:48:46,169 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-11T02:48:46,170 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-11T02:48:46,171 even if it does not contain any `.py` files. 2024-05-11T02:48:46,171 On the other hand, currently there is no concept of package data 2024-05-11T02:48:46,172 directory, all directories are treated like packages. 2024-05-11T02:48:46,172 ******************************************************************************** 2024-05-11T02:48:46,173 !! 2024-05-11T02:48:46,174 check.warn(importable) 2024-05-11T02:48:46,174 creating build/lib/STCAT/data 2024-05-11T02:48:46,175 copying STCAT/data/T_cell.pkl -> build/lib/STCAT/data 2024-05-11T02:48:46,178 copying STCAT/data/cd4.pkl -> build/lib/STCAT/data 2024-05-11T02:48:46,179 copying STCAT/data/cd8.pkl -> build/lib/STCAT/data 2024-05-11T02:48:46,180 copying STCAT/data/marker_CD4.txt -> build/lib/STCAT/data 2024-05-11T02:48:46,182 copying STCAT/data/marker_CD8.txt -> build/lib/STCAT/data 2024-05-11T02:48:46,209 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-11T02:48:46,209 !! 2024-05-11T02:48:46,210 ******************************************************************************** 2024-05-11T02:48:46,211 Please avoid running ``setup.py`` directly. 2024-05-11T02:48:46,212 Instead, use pypa/build, pypa/installer or other 2024-05-11T02:48:46,212 standards-based tools. 2024-05-11T02:48:46,213 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-11T02:48:46,214 ******************************************************************************** 2024-05-11T02:48:46,215 !! 2024-05-11T02:48:46,216 self.initialize_options() 2024-05-11T02:48:46,235 installing to build/bdist.linux-armv7l/wheel 2024-05-11T02:48:46,235 running install 2024-05-11T02:48:46,259 running install_lib 2024-05-11T02:48:46,283 creating build/bdist.linux-armv7l 2024-05-11T02:48:46,284 creating build/bdist.linux-armv7l/wheel 2024-05-11T02:48:46,286 creating build/bdist.linux-armv7l/wheel/STCAT 2024-05-11T02:48:46,287 creating build/bdist.linux-armv7l/wheel/STCAT/data 2024-05-11T02:48:46,288 copying build/lib/STCAT/data/marker_CD8.txt -> build/bdist.linux-armv7l/wheel/STCAT/data 2024-05-11T02:48:46,290 copying build/lib/STCAT/data/cd8.pkl -> build/bdist.linux-armv7l/wheel/STCAT/data 2024-05-11T02:48:46,297 copying build/lib/STCAT/data/T_cell.pkl -> build/bdist.linux-armv7l/wheel/STCAT/data 2024-05-11T02:48:46,320 copying build/lib/STCAT/data/cd4.pkl -> build/bdist.linux-armv7l/wheel/STCAT/data 2024-05-11T02:48:46,332 copying build/lib/STCAT/data/marker_CD4.txt -> build/bdist.linux-armv7l/wheel/STCAT/data 2024-05-11T02:48:46,334 copying build/lib/STCAT/STCAT.py -> build/bdist.linux-armv7l/wheel/STCAT 2024-05-11T02:48:46,337 copying build/lib/STCAT/annotate.py -> build/bdist.linux-armv7l/wheel/STCAT 2024-05-11T02:48:46,339 copying build/lib/STCAT/models.py -> build/bdist.linux-armv7l/wheel/STCAT 2024-05-11T02:48:46,341 copying build/lib/STCAT/__init__.py -> build/bdist.linux-armv7l/wheel/STCAT 2024-05-11T02:48:46,343 copying build/lib/STCAT/logger.py -> build/bdist.linux-armv7l/wheel/STCAT 2024-05-11T02:48:46,345 copying build/lib/STCAT/classifier.py -> build/bdist.linux-armv7l/wheel/STCAT 2024-05-11T02:48:46,347 running install_egg_info 2024-05-11T02:48:46,379 Copying STCAT.egg-info to build/bdist.linux-armv7l/wheel/STCAT-0.6.1-py3.11.egg-info 2024-05-11T02:48:46,387 running install_scripts 2024-05-11T02:48:46,400 creating build/bdist.linux-armv7l/wheel/STCAT-0.6.1.dist-info/WHEEL 2024-05-11T02:48:46,402 creating '/tmp/pip-wheel-lap937gc/STCAT-0.6.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-11T02:48:46,405 adding 'STCAT/STCAT.py' 2024-05-11T02:48:46,406 adding 'STCAT/__init__.py' 2024-05-11T02:48:46,408 adding 'STCAT/annotate.py' 2024-05-11T02:48:46,411 adding 'STCAT/classifier.py' 2024-05-11T02:48:46,412 adding 'STCAT/logger.py' 2024-05-11T02:48:46,414 adding 'STCAT/models.py' 2024-05-11T02:48:46,564 adding 'STCAT/data/T_cell.pkl' 2024-05-11T02:48:46,650 adding 'STCAT/data/cd4.pkl' 2024-05-11T02:48:46,694 adding 'STCAT/data/cd8.pkl' 2024-05-11T02:48:46,698 adding 'STCAT/data/marker_CD4.txt' 2024-05-11T02:48:46,699 adding 'STCAT/data/marker_CD8.txt' 2024-05-11T02:48:46,701 adding 'STCAT-0.6.1.dist-info/METADATA' 2024-05-11T02:48:46,702 adding 'STCAT-0.6.1.dist-info/WHEEL' 2024-05-11T02:48:46,703 adding 'STCAT-0.6.1.dist-info/top_level.txt' 2024-05-11T02:48:46,704 adding 'STCAT-0.6.1.dist-info/RECORD' 2024-05-11T02:48:46,724 removing build/bdist.linux-armv7l/wheel 2024-05-11T02:48:46,849 Building wheel for stcat (setup.py): finished with status 'done' 2024-05-11T02:48:46,868 Created wheel for stcat: filename=STCAT-0.6.1-py3-none-any.whl size=1710925 sha256=891d77af24be86751f576bb169f2f9ce00f96953f955fed43faa845417723e89 2024-05-11T02:48:46,869 Stored in directory: /tmp/pip-ephem-wheel-cache-ewaf3ab1/wheels/a7/93/ba/07d726a4091b2e232c1cd9d40ca9f888757492a2e1bc97922f 2024-05-11T02:48:46,878 Successfully built stcat 2024-05-11T02:48:46,930 Removed build tracker: '/tmp/pip-build-tracker-xoz91kyt'