2024-05-11T23:03:50,965 Created temporary directory: /tmp/pip-build-tracker-cgz98xd2
2024-05-11T23:03:50,967 Initialized build tracking at /tmp/pip-build-tracker-cgz98xd2
2024-05-11T23:03:50,967 Created build tracker: /tmp/pip-build-tracker-cgz98xd2
2024-05-11T23:03:50,968 Entered build tracker: /tmp/pip-build-tracker-cgz98xd2
2024-05-11T23:03:50,968 Created temporary directory: /tmp/pip-wheel-7pfjgnlu
2024-05-11T23:03:50,971 Created temporary directory: /tmp/pip-ephem-wheel-cache-p60q43yv
2024-05-11T23:03:50,993 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-05-11T23:03:50,996 2 location(s) to search for versions of singlem:
2024-05-11T23:03:50,996 * https://pypi.org/simple/singlem/
2024-05-11T23:03:50,996 * https://www.piwheels.org/simple/singlem/
2024-05-11T23:03:50,997 Fetching project page and analyzing links: https://pypi.org/simple/singlem/
2024-05-11T23:03:50,998 Getting page https://pypi.org/simple/singlem/
2024-05-11T23:03:50,999 Found index url https://pypi.org/simple/
2024-05-11T23:03:51,218 Fetched page https://pypi.org/simple/singlem/ as application/vnd.pypi.simple.v1+json
2024-05-11T23:03:51,224   Found link https://files.pythonhosted.org/packages/35/55/72780c79146b2ccd465016b28eccbe6c326493f5a8db3c489eda3382fbb1/singlem-0.7.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.7.1
2024-05-11T23:03:51,225   Found link https://files.pythonhosted.org/packages/17/8b/f553c11bbb3e950516589aa26299b85098d0ac78405a4ebacefa023de306/singlem-0.8.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.0
2024-05-11T23:03:51,225   Found link https://files.pythonhosted.org/packages/b6/f9/9538a096be3c2cc820642d87a626e45ce03f55716175025605b2d33f5e39/singlem-0.8.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.1
2024-05-11T23:03:51,226   Found link https://files.pythonhosted.org/packages/ca/c5/95b117cf1ebc381cf922280dd0aaaf9967777c903c8a079330728a278709/singlem-0.8.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.2
2024-05-11T23:03:51,226   Found link https://files.pythonhosted.org/packages/9d/8d/156892825f51ea215336c9171ba98ddd3003bc72538232c3e5cc20840b9c/singlem-0.9.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.9.0
2024-05-11T23:03:51,227   Found link https://files.pythonhosted.org/packages/9c/7c/bdc416d19613e03f631006b9e63355480dfd5438007172002652014dccd5/singlem-0.11.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.11.0
2024-05-11T23:03:51,228   Found link https://files.pythonhosted.org/packages/a3/67/58f5f073fa50c02cf0ccbade3bc0823976f29d12545e48a0b2f2c45288f9/singlem-0.12.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.0
2024-05-11T23:03:51,229   Found link https://files.pythonhosted.org/packages/68/8c/8bd9277ff17836d14658186469cb05376569f052f90cb3a82a449ac7eea4/singlem-0.12.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.1
2024-05-11T23:03:51,229   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/17/71/31b5c5d9541c9104d713a0eced18a124a696ee81f9f9dddd578e02b4380f/singlem-0.13.0-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2024-05-11T23:03:51,230   Found link https://files.pythonhosted.org/packages/db/0b/e73e8b154bbca8f6fb81337791f7420b54b128f3682f9b394843c6559bbc/singlem-0.13.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.0
2024-05-11T23:03:51,231   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/9c/c2/59c1904feff0407c2ca5f1ec0ae098f42415c722f36cf01836c400a0e6ec/singlem-0.13.1-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2024-05-11T23:03:51,231   Found link https://files.pythonhosted.org/packages/54/6a/d718c26f15b38a4b0e999f8246dcfcd5b7237c2298009031ebd18d7e2a7d/singlem-0.13.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.1
2024-05-11T23:03:51,232   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/aa/67/a4cf9b0c9f573201e887a91a98251ad31dace8433b735c7f698a9e94ebc0/singlem-0.13.2-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2024-05-11T23:03:51,232   Found link https://files.pythonhosted.org/packages/2a/bb/75b1c30a8c30835d277ce6cacbd827fde3f094648bf6c5d4fff5d922b2f7/singlem-0.13.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.2
2024-05-11T23:03:51,233   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/50/5a/f72ef558f096a3c9706e30c3bd0dab98c42539b6d507b8e8554c4433edda/singlem-0.14.0-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2024-05-11T23:03:51,234   Found link https://files.pythonhosted.org/packages/7c/7b/ca7227ef1d9151143a723d74b26bca4d18c6d60870348b4a4aee539ad343/singlem-0.14.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.14.0
2024-05-11T23:03:51,234   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/4c/a3/98cd7cfaef694f36655d9c8d193774e7d94fd9e0f6fc9d92f402fc88b898/singlem-0.15.0-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2024-05-11T23:03:51,235   Found link https://files.pythonhosted.org/packages/b1/7c/e32b071b5a3f79fb69c39f9a172a179a3c5071e5344fc52387b561fbf38e/singlem-0.15.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.0
2024-05-11T23:03:51,235   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/fc/16/ea6f071e069d735d896eec440e65fdeaf88d69123893b1e7198bde08ba5e/singlem-0.15.1-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2024-05-11T23:03:51,236   Found link https://files.pythonhosted.org/packages/ed/e7/34484f28ce4bb10dc929264cea43d5683c213858b91520243c197eba77b0/singlem-0.15.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.1
2024-05-11T23:03:51,236   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/22/91/db397eac675c00346bf5cd791b7bf0e7ce239b22ae55f255af6f35e34d7e/singlem-0.16.0-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2024-05-11T23:03:51,237   Found link https://files.pythonhosted.org/packages/04/5a/0eb1e0bcf0d3fdeb87d543d86ef1c5cba4e5dedb4165a06f21b84e80f744/singlem-0.16.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.16.0
2024-05-11T23:03:51,238   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/f7/8b/22924e7ea1fdafa961cd2534919ae78fb024516d61e5c3f988bd1a92cd3c/singlem-0.17.0-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2024-05-11T23:03:51,238   Found link https://files.pythonhosted.org/packages/a6/b9/168d5463ab41e4f0511b7fe868b80d019dcedb5c14b3b04eea91b39ab5e5/singlem-0.17.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.17.0
2024-05-11T23:03:51,239   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/84/1a/8a17c9c2a441e8ec94ac79f90d63cb2dfd994594fc9b0ac177dd4d511a78/singlem-1.0.0b8-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2024-05-11T23:03:51,240   Found link https://files.pythonhosted.org/packages/3e/08/4fe229183f8c2c33255bcf7148fa79b6dd1d65453bcb99d37f82600441b7/singlem-1.0.0b8.tar.gz (from https://pypi.org/simple/singlem/), version: 1.0.0b8
2024-05-11T23:03:51,241 Fetching project page and analyzing links: https://www.piwheels.org/simple/singlem/
2024-05-11T23:03:51,241 Getting page https://www.piwheels.org/simple/singlem/
2024-05-11T23:03:51,243 Found index url https://www.piwheels.org/simple/
2024-05-11T23:03:51,429 Fetched page https://www.piwheels.org/simple/singlem/ as text/html
2024-05-11T23:03:51,433   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-1.0.0b8-py3-none-any.whl#sha256=3365626c8cb55d23a5197a42572fbbb259c9dbc65b14a97f8e800c940b9a362c (from https://www.piwheels.org/simple/singlem/)
2024-05-11T23:03:51,434   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.16.0-py3-none-any.whl#sha256=899b9e72e567babdc8e689ef6c2676d7d7c58fecb2ebed82d413c75d17c4e410 (from https://www.piwheels.org/simple/singlem/)
2024-05-11T23:03:51,435   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.15.1-py3-none-any.whl#sha256=4cc1d3a1e437383de7a99970d08e9abdd2633314cf3a06760f8822d81533f512 (from https://www.piwheels.org/simple/singlem/)
2024-05-11T23:03:51,435   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.15.0-py3-none-any.whl#sha256=51ac005a1c09c7004e5639c3045e1313d39f7d8d4d77c417b63c8f4e243cec51 (from https://www.piwheels.org/simple/singlem/)
2024-05-11T23:03:51,436   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.14.0-py3-none-any.whl#sha256=184ece47180c793b14866826b9436d33ec0fd1d3c5e2cf5bf0c7625520509208 (from https://www.piwheels.org/simple/singlem/)
2024-05-11T23:03:51,436   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.2-py3-none-any.whl#sha256=0b410717882ab1cf12894ff799a530aaacb1eb2b69ad778355384c3ec5316bbb (from https://www.piwheels.org/simple/singlem/)
2024-05-11T23:03:51,437   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.1-py3-none-any.whl#sha256=950f2fc4d7e4eee5e75cc2bb2a5b7119aaa39590ee8c5fe9086ae0425a268fa3 (from https://www.piwheels.org/simple/singlem/)
2024-05-11T23:03:51,437   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.0-py3-none-any.whl#sha256=5f5cb853b85d738f19c8d06c769e4c1f5ae107ae7a2489c75185a7eeb3f0a9e6 (from https://www.piwheels.org/simple/singlem/)
2024-05-11T23:03:51,437   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.12.0-py3-none-any.whl#sha256=044eb417530be9293ed3640ebb56b5a2f8cfb34d2f8dab45e96556494cf0c2d5 (from https://www.piwheels.org/simple/singlem/)
2024-05-11T23:03:51,438   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.11.0-py3-none-any.whl#sha256=83c2697c65261566314896fee814840e77012597bb29405182cf4a3063711651 (from https://www.piwheels.org/simple/singlem/)
2024-05-11T23:03:51,438   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.9.0-py3-none-any.whl#sha256=bfb2dc9633dea53293af0244d04cb1bd0e981c01cfe3dce8cc5b7cd4cf9d7eb9 (from https://www.piwheels.org/simple/singlem/)
2024-05-11T23:03:51,439   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.8.2-py3-none-any.whl#sha256=9f7f2cf19f5d8b565a8641eed3e9925ee9112647c245999a6f685af7bfa1c001 (from https://www.piwheels.org/simple/singlem/)
2024-05-11T23:03:51,440 Skipping link: not a file: https://www.piwheels.org/simple/singlem/
2024-05-11T23:03:51,440 Skipping link: not a file: https://pypi.org/simple/singlem/
2024-05-11T23:03:51,461 Given no hashes to check 1 links for project 'singlem': discarding no candidates
2024-05-11T23:03:51,478 Collecting singlem==0.17.0
2024-05-11T23:03:51,481   Created temporary directory: /tmp/pip-unpack-o57g0i0e
2024-05-11T23:03:51,699   Downloading singlem-0.17.0.tar.gz (182 kB)
2024-05-11T23:03:51,961   Added singlem==0.17.0 from https://files.pythonhosted.org/packages/a6/b9/168d5463ab41e4f0511b7fe868b80d019dcedb5c14b3b04eea91b39ab5e5/singlem-0.17.0.tar.gz to build tracker '/tmp/pip-build-tracker-cgz98xd2'
2024-05-11T23:03:51,962   Running setup.py (path:/tmp/pip-wheel-7pfjgnlu/singlem_dd0fd32bebfc44d7b5bbef239f13237c/setup.py) egg_info for package singlem
2024-05-11T23:03:51,963   Created temporary directory: /tmp/pip-pip-egg-info-ibjdo2pr
2024-05-11T23:03:51,964   Preparing metadata (setup.py): started
2024-05-11T23:03:51,965   Running command python setup.py egg_info
2024-05-11T23:03:53,037   running egg_info
2024-05-11T23:03:53,039   creating /tmp/pip-pip-egg-info-ibjdo2pr/singlem.egg-info
2024-05-11T23:03:53,064   writing /tmp/pip-pip-egg-info-ibjdo2pr/singlem.egg-info/PKG-INFO
2024-05-11T23:03:53,068   writing dependency_links to /tmp/pip-pip-egg-info-ibjdo2pr/singlem.egg-info/dependency_links.txt
2024-05-11T23:03:53,070   writing requirements to /tmp/pip-pip-egg-info-ibjdo2pr/singlem.egg-info/requires.txt
2024-05-11T23:03:53,071   writing top-level names to /tmp/pip-pip-egg-info-ibjdo2pr/singlem.egg-info/top_level.txt
2024-05-11T23:03:53,072   writing manifest file '/tmp/pip-pip-egg-info-ibjdo2pr/singlem.egg-info/SOURCES.txt'
2024-05-11T23:03:53,184   reading manifest file '/tmp/pip-pip-egg-info-ibjdo2pr/singlem.egg-info/SOURCES.txt'
2024-05-11T23:03:53,185   reading manifest template 'MANIFEST.in'
2024-05-11T23:03:53,186   warning: no files found matching 'LICENSE'
2024-05-11T23:03:53,187   warning: no previously-included files matching '*' found under directory 'test'
2024-05-11T23:03:53,188   adding license file 'LICENCE.txt'
2024-05-11T23:03:53,191   writing manifest file '/tmp/pip-pip-egg-info-ibjdo2pr/singlem.egg-info/SOURCES.txt'
2024-05-11T23:03:53,308   Preparing metadata (setup.py): finished with status 'done'
2024-05-11T23:03:53,312   Source in /tmp/pip-wheel-7pfjgnlu/singlem_dd0fd32bebfc44d7b5bbef239f13237c has version 0.17.0, which satisfies requirement singlem==0.17.0 from https://files.pythonhosted.org/packages/a6/b9/168d5463ab41e4f0511b7fe868b80d019dcedb5c14b3b04eea91b39ab5e5/singlem-0.17.0.tar.gz
2024-05-11T23:03:53,313   Removed singlem==0.17.0 from https://files.pythonhosted.org/packages/a6/b9/168d5463ab41e4f0511b7fe868b80d019dcedb5c14b3b04eea91b39ab5e5/singlem-0.17.0.tar.gz from build tracker '/tmp/pip-build-tracker-cgz98xd2'
2024-05-11T23:03:53,318 Created temporary directory: /tmp/pip-unpack-cldf_wkm
2024-05-11T23:03:53,319 Created temporary directory: /tmp/pip-unpack-gw7sv9mc
2024-05-11T23:03:53,335 Building wheels for collected packages: singlem
2024-05-11T23:03:53,339   Created temporary directory: /tmp/pip-wheel-d94pvvby
2024-05-11T23:03:53,340   Building wheel for singlem (setup.py): started
2024-05-11T23:03:53,341   Destination directory: /tmp/pip-wheel-d94pvvby
2024-05-11T23:03:53,341   Running command python setup.py bdist_wheel
2024-05-11T23:03:54,398   running bdist_wheel
2024-05-11T23:03:54,494   running build
2024-05-11T23:03:54,495   running build_py
2024-05-11T23:03:54,523   creating build
2024-05-11T23:03:54,523   creating build/lib
2024-05-11T23:03:54,524   creating build/lib/singlem
2024-05-11T23:03:54,526   copying singlem/archive_otu_table.py -> build/lib/singlem
2024-05-11T23:03:54,528   copying singlem/package_creator.py -> build/lib/singlem
2024-05-11T23:03:54,530   copying singlem/singlem.py -> build/lib/singlem
2024-05-11T23:03:54,532   copying singlem/renew.py -> build/lib/singlem
2024-05-11T23:03:54,534   copying singlem/kingfisher_sra.py -> build/lib/singlem
2024-05-11T23:03:54,536   copying singlem/ordered_set.py -> build/lib/singlem
2024-05-11T23:03:54,538   copying singlem/supplement.py -> build/lib/singlem
2024-05-11T23:03:54,541   copying singlem/query_formatters.py -> build/lib/singlem
2024-05-11T23:03:54,543   copying singlem/condense.py -> build/lib/singlem
2024-05-11T23:03:54,546   copying singlem/genome_size.py -> build/lib/singlem
2024-05-11T23:03:54,547   copying singlem/taxonomy_bihash.py -> build/lib/singlem
2024-05-11T23:03:54,549   copying singlem/otu_table.py -> build/lib/singlem
2024-05-11T23:03:54,551   copying singlem/diamond_parser.py -> build/lib/singlem
2024-05-11T23:03:54,553   copying singlem/appraisal_result.py -> build/lib/singlem
2024-05-11T23:03:54,555   copying singlem/regenerator.py -> build/lib/singlem
2024-05-11T23:03:54,558   copying singlem/graftm_result.py -> build/lib/singlem
2024-05-11T23:03:54,560   copying singlem/singlem_package.py -> build/lib/singlem
2024-05-11T23:03:54,562   copying singlem/orf_length_checker.py -> build/lib/singlem
2024-05-11T23:03:54,564   copying singlem/rarefier.py -> build/lib/singlem
2024-05-11T23:03:54,566   copying singlem/hmm_logo.py -> build/lib/singlem
2024-05-11T23:03:54,568   copying singlem/metapackage.py -> build/lib/singlem
2024-05-11T23:03:54,571   copying singlem/version.py -> build/lib/singlem
2024-05-11T23:03:54,573   copying singlem/checkm2.py -> build/lib/singlem
2024-05-11T23:03:54,575   copying singlem/trim_package_hmms.py -> build/lib/singlem
2024-05-11T23:03:54,577   copying singlem/genome_fasta_mux.py -> build/lib/singlem
2024-05-11T23:03:54,578   copying singlem/placement_parser.py -> build/lib/singlem
2024-05-11T23:03:54,580   copying singlem/chainsaw.py -> build/lib/singlem
2024-05-11T23:03:54,583   copying singlem/pipe.py -> build/lib/singlem
2024-05-11T23:03:54,586   copying singlem/singlem_database_models.py -> build/lib/singlem
2024-05-11T23:03:54,588   copying singlem/taxonomy.py -> build/lib/singlem
2024-05-11T23:03:54,590   copying singlem/otu_table_entry.py -> build/lib/singlem
2024-05-11T23:03:54,592   copying singlem/clusterer.py -> build/lib/singlem
2024-05-11T23:03:54,594   copying singlem/known_otu_table.py -> build/lib/singlem
2024-05-11T23:03:54,595   copying singlem/sequence_classes.py -> build/lib/singlem
2024-05-11T23:03:54,597   copying singlem/diamond_spkg_searcher.py -> build/lib/singlem
2024-05-11T23:03:54,599   copying singlem/streaming_hmm_search_result.py -> build/lib/singlem
2024-05-11T23:03:54,601   copying singlem/run_via_os_system.py -> build/lib/singlem
2024-05-11T23:03:54,602   copying singlem/pipe_taxonomy_assigner_by_query.py -> build/lib/singlem
2024-05-11T23:03:54,605   copying singlem/otu_table_collection.py -> build/lib/singlem
2024-05-11T23:03:54,607   copying singlem/__init__.py -> build/lib/singlem
2024-05-11T23:03:54,608   copying singlem/metapackage_read_name_store.py -> build/lib/singlem
2024-05-11T23:03:54,610   copying singlem/strain_summariser.py -> build/lib/singlem
2024-05-11T23:03:54,612   copying singlem/read_fraction.py -> build/lib/singlem
2024-05-11T23:03:54,614   copying singlem/querier.py -> build/lib/singlem
2024-05-11T23:03:54,617   copying singlem/summariser.py -> build/lib/singlem
2024-05-11T23:03:54,620   copying singlem/sequence_database.py -> build/lib/singlem
2024-05-11T23:03:54,622   copying singlem/appraiser.py -> build/lib/singlem
2024-05-11T23:03:54,625   copying singlem/dereplicator.py -> build/lib/singlem
2024-05-11T23:03:54,627   copying singlem/metagenome_otu_finder.py -> build/lib/singlem
2024-05-11T23:03:54,629   copying singlem/sequence_extractor.py -> build/lib/singlem
2024-05-11T23:03:54,630   copying singlem/pipe_sequence_extractor.py -> build/lib/singlem
2024-05-11T23:03:54,634   creating build/lib/singlem/biolib_lite
2024-05-11T23:03:54,635   copying singlem/biolib_lite/exceptions.py -> build/lib/singlem/biolib_lite
2024-05-11T23:03:54,636   copying singlem/biolib_lite/seq_io.py -> build/lib/singlem/biolib_lite
2024-05-11T23:03:54,638   copying singlem/biolib_lite/newick.py -> build/lib/singlem/biolib_lite
2024-05-11T23:03:54,640   copying singlem/biolib_lite/custom_help_formatter.py -> build/lib/singlem/biolib_lite
2024-05-11T23:03:54,642   copying singlem/biolib_lite/execute.py -> build/lib/singlem/biolib_lite
2024-05-11T23:03:54,644   copying singlem/biolib_lite/taxonomy.py -> build/lib/singlem/biolib_lite
2024-05-11T23:03:54,647   copying singlem/biolib_lite/prodigal_biolib.py -> build/lib/singlem/biolib_lite
2024-05-11T23:03:54,649   copying singlem/biolib_lite/common.py -> build/lib/singlem/biolib_lite
2024-05-11T23:03:54,651   copying singlem/biolib_lite/__init__.py -> build/lib/singlem/biolib_lite
2024-05-11T23:03:54,652   copying singlem/biolib_lite/logger.py -> build/lib/singlem/biolib_lite
2024-05-11T23:03:54,655   copying singlem/biolib_lite/parallel.py -> build/lib/singlem/biolib_lite
2024-05-11T23:03:54,657   running egg_info
2024-05-11T23:03:54,714   writing singlem.egg-info/PKG-INFO
2024-05-11T23:03:54,717   writing dependency_links to singlem.egg-info/dependency_links.txt
2024-05-11T23:03:54,719   writing requirements to singlem.egg-info/requires.txt
2024-05-11T23:03:54,720   writing top-level names to singlem.egg-info/top_level.txt
2024-05-11T23:03:54,751   reading manifest file 'singlem.egg-info/SOURCES.txt'
2024-05-11T23:03:54,754   reading manifest template 'MANIFEST.in'
2024-05-11T23:03:54,755   warning: no files found matching 'LICENSE'
2024-05-11T23:03:54,755   warning: no previously-included files matching '*' found under directory 'test'
2024-05-11T23:03:54,756   adding license file 'LICENCE.txt'
2024-05-11T23:03:54,760   writing manifest file 'singlem.egg-info/SOURCES.txt'
2024-05-11T23:03:54,765   running build_scripts
2024-05-11T23:03:54,766   creating build/scripts-3.11
2024-05-11T23:03:54,767   copying and adjusting bin/singlem -> build/scripts-3.11
2024-05-11T23:03:54,771   changing mode of build/scripts-3.11/singlem from 644 to 755
2024-05-11T23:03:54,800   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-05-11T23:03:54,801   !!

2024-05-11T23:03:54,801           ********************************************************************************
2024-05-11T23:03:54,802           Please avoid running ``setup.py`` directly.
2024-05-11T23:03:54,802           Instead, use pypa/build, pypa/installer or other
2024-05-11T23:03:54,803           standards-based tools.

2024-05-11T23:03:54,804           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-05-11T23:03:54,804           ********************************************************************************

2024-05-11T23:03:54,805   !!
2024-05-11T23:03:54,805     self.initialize_options()
2024-05-11T23:03:54,825   installing to build/bdist.linux-armv7l/wheel
2024-05-11T23:03:54,825   running install
2024-05-11T23:03:54,850   running install_lib
2024-05-11T23:03:54,874   creating build/bdist.linux-armv7l
2024-05-11T23:03:54,874   creating build/bdist.linux-armv7l/wheel
2024-05-11T23:03:54,876   creating build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,878   copying build/lib/singlem/archive_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,880   copying build/lib/singlem/package_creator.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,882   copying build/lib/singlem/singlem.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,884   copying build/lib/singlem/renew.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,886   copying build/lib/singlem/kingfisher_sra.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,888   copying build/lib/singlem/ordered_set.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,890   copying build/lib/singlem/supplement.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,894   copying build/lib/singlem/query_formatters.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,896   copying build/lib/singlem/condense.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,899   copying build/lib/singlem/genome_size.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,901   copying build/lib/singlem/taxonomy_bihash.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,902   copying build/lib/singlem/otu_table.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,905   copying build/lib/singlem/diamond_parser.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,906   copying build/lib/singlem/appraisal_result.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,909   copying build/lib/singlem/regenerator.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,911   copying build/lib/singlem/graftm_result.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,913   copying build/lib/singlem/singlem_package.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,916   copying build/lib/singlem/orf_length_checker.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,917   copying build/lib/singlem/rarefier.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,919   copying build/lib/singlem/hmm_logo.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,921   copying build/lib/singlem/metapackage.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,923   copying build/lib/singlem/version.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,925   copying build/lib/singlem/checkm2.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,927   copying build/lib/singlem/trim_package_hmms.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,929   copying build/lib/singlem/genome_fasta_mux.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,931   copying build/lib/singlem/placement_parser.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,933   copying build/lib/singlem/chainsaw.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,935   copying build/lib/singlem/pipe.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,939   copying build/lib/singlem/singlem_database_models.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,941   copying build/lib/singlem/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,943   copying build/lib/singlem/otu_table_entry.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,945   copying build/lib/singlem/clusterer.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,947   copying build/lib/singlem/known_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,949   copying build/lib/singlem/sequence_classes.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,951   copying build/lib/singlem/diamond_spkg_searcher.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,953   copying build/lib/singlem/streaming_hmm_search_result.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,955   copying build/lib/singlem/run_via_os_system.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,957   copying build/lib/singlem/pipe_taxonomy_assigner_by_query.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,959   copying build/lib/singlem/otu_table_collection.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,961   copying build/lib/singlem/__init__.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,963   creating build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2024-05-11T23:03:54,964   copying build/lib/singlem/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2024-05-11T23:03:54,966   copying build/lib/singlem/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2024-05-11T23:03:54,968   copying build/lib/singlem/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2024-05-11T23:03:54,970   copying build/lib/singlem/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2024-05-11T23:03:54,972   copying build/lib/singlem/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2024-05-11T23:03:54,974   copying build/lib/singlem/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2024-05-11T23:03:54,977   copying build/lib/singlem/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2024-05-11T23:03:54,979   copying build/lib/singlem/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2024-05-11T23:03:54,981   copying build/lib/singlem/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2024-05-11T23:03:54,983   copying build/lib/singlem/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2024-05-11T23:03:54,985   copying build/lib/singlem/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2024-05-11T23:03:54,987   copying build/lib/singlem/metapackage_read_name_store.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,989   copying build/lib/singlem/strain_summariser.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,991   copying build/lib/singlem/read_fraction.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,994   copying build/lib/singlem/querier.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:54,996   copying build/lib/singlem/summariser.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:55,000   copying build/lib/singlem/sequence_database.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:55,003   copying build/lib/singlem/appraiser.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:55,006   copying build/lib/singlem/dereplicator.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:55,008   copying build/lib/singlem/metagenome_otu_finder.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:55,011   copying build/lib/singlem/sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:55,013   copying build/lib/singlem/pipe_sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem
2024-05-11T23:03:55,015   running install_data
2024-05-11T23:03:55,043   creating build/bdist.linux-armv7l/wheel/singlem-0.17.0.data
2024-05-11T23:03:55,044   creating build/bdist.linux-armv7l/wheel/singlem-0.17.0.data/data
2024-05-11T23:03:55,046   copying README.md -> build/bdist.linux-armv7l/wheel/singlem-0.17.0.data/data/.
2024-05-11T23:03:55,048   copying LICENCE.txt -> build/bdist.linux-armv7l/wheel/singlem-0.17.0.data/data/.
2024-05-11T23:03:55,050   running install_egg_info
2024-05-11T23:03:55,083   Copying singlem.egg-info to build/bdist.linux-armv7l/wheel/singlem-0.17.0-py3.11.egg-info
2024-05-11T23:03:55,092   running install_scripts
2024-05-11T23:03:55,094   creating build/bdist.linux-armv7l/wheel/singlem-0.17.0.data/scripts
2024-05-11T23:03:55,095   copying build/scripts-3.11/singlem -> build/bdist.linux-armv7l/wheel/singlem-0.17.0.data/scripts
2024-05-11T23:03:55,098   changing mode of build/bdist.linux-armv7l/wheel/singlem-0.17.0.data/scripts/singlem to 755
2024-05-11T23:03:55,115   creating build/bdist.linux-armv7l/wheel/singlem-0.17.0.dist-info/WHEEL
2024-05-11T23:03:55,117   creating '/tmp/pip-wheel-d94pvvby/singlem-0.17.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-05-11T23:03:55,121   adding 'singlem/__init__.py'
2024-05-11T23:03:55,124   adding 'singlem/appraisal_result.py'
2024-05-11T23:03:55,127   adding 'singlem/appraiser.py'
2024-05-11T23:03:55,129   adding 'singlem/archive_otu_table.py'
2024-05-11T23:03:55,131   adding 'singlem/chainsaw.py'
2024-05-11T23:03:55,133   adding 'singlem/checkm2.py'
2024-05-11T23:03:55,135   adding 'singlem/clusterer.py'
2024-05-11T23:03:55,141   adding 'singlem/condense.py'
2024-05-11T23:03:55,144   adding 'singlem/dereplicator.py'
2024-05-11T23:03:55,145   adding 'singlem/diamond_parser.py'
2024-05-11T23:03:55,147   adding 'singlem/diamond_spkg_searcher.py'
2024-05-11T23:03:55,149   adding 'singlem/genome_fasta_mux.py'
2024-05-11T23:03:55,151   adding 'singlem/genome_size.py'
2024-05-11T23:03:55,153   adding 'singlem/graftm_result.py'
2024-05-11T23:03:55,154   adding 'singlem/hmm_logo.py'
2024-05-11T23:03:55,156   adding 'singlem/kingfisher_sra.py'
2024-05-11T23:03:55,158   adding 'singlem/known_otu_table.py'
2024-05-11T23:03:55,160   adding 'singlem/metagenome_otu_finder.py'
2024-05-11T23:03:55,163   adding 'singlem/metapackage.py'
2024-05-11T23:03:55,165   adding 'singlem/metapackage_read_name_store.py'
2024-05-11T23:03:55,167   adding 'singlem/ordered_set.py'
2024-05-11T23:03:55,169   adding 'singlem/orf_length_checker.py'
2024-05-11T23:03:55,171   adding 'singlem/otu_table.py'
2024-05-11T23:03:55,173   adding 'singlem/otu_table_collection.py'
2024-05-11T23:03:55,175   adding 'singlem/otu_table_entry.py'
2024-05-11T23:03:55,177   adding 'singlem/package_creator.py'
2024-05-11T23:03:55,187   adding 'singlem/pipe.py'
2024-05-11T23:03:55,191   adding 'singlem/pipe_sequence_extractor.py'
2024-05-11T23:03:55,193   adding 'singlem/pipe_taxonomy_assigner_by_query.py'
2024-05-11T23:03:55,195   adding 'singlem/placement_parser.py'
2024-05-11T23:03:55,199   adding 'singlem/querier.py'
2024-05-11T23:03:55,201   adding 'singlem/query_formatters.py'
2024-05-11T23:03:55,203   adding 'singlem/rarefier.py'
2024-05-11T23:03:55,206   adding 'singlem/read_fraction.py'
2024-05-11T23:03:55,208   adding 'singlem/regenerator.py'
2024-05-11T23:03:55,210   adding 'singlem/renew.py'
2024-05-11T23:03:55,212   adding 'singlem/run_via_os_system.py'
2024-05-11T23:03:55,214   adding 'singlem/sequence_classes.py'
2024-05-11T23:03:55,219   adding 'singlem/sequence_database.py'
2024-05-11T23:03:55,221   adding 'singlem/sequence_extractor.py'
2024-05-11T23:03:55,222   adding 'singlem/singlem.py'
2024-05-11T23:03:55,224   adding 'singlem/singlem_database_models.py'
2024-05-11T23:03:55,227   adding 'singlem/singlem_package.py'
2024-05-11T23:03:55,229   adding 'singlem/strain_summariser.py'
2024-05-11T23:03:55,230   adding 'singlem/streaming_hmm_search_result.py'
2024-05-11T23:03:55,234   adding 'singlem/summariser.py'
2024-05-11T23:03:55,240   adding 'singlem/supplement.py'
2024-05-11T23:03:55,242   adding 'singlem/taxonomy.py'
2024-05-11T23:03:55,243   adding 'singlem/taxonomy_bihash.py'
2024-05-11T23:03:55,245   adding 'singlem/trim_package_hmms.py'
2024-05-11T23:03:55,247   adding 'singlem/version.py'
2024-05-11T23:03:55,249   adding 'singlem/biolib_lite/__init__.py'
2024-05-11T23:03:55,250   adding 'singlem/biolib_lite/common.py'
2024-05-11T23:03:55,252   adding 'singlem/biolib_lite/custom_help_formatter.py'
2024-05-11T23:03:55,254   adding 'singlem/biolib_lite/exceptions.py'
2024-05-11T23:03:55,256   adding 'singlem/biolib_lite/execute.py'
2024-05-11T23:03:55,258   adding 'singlem/biolib_lite/logger.py'
2024-05-11T23:03:55,259   adding 'singlem/biolib_lite/newick.py'
2024-05-11T23:03:55,262   adding 'singlem/biolib_lite/parallel.py'
2024-05-11T23:03:55,264   adding 'singlem/biolib_lite/prodigal_biolib.py'
2024-05-11T23:03:55,266   adding 'singlem/biolib_lite/seq_io.py'
2024-05-11T23:03:55,270   adding 'singlem/biolib_lite/taxonomy.py'
2024-05-11T23:03:55,277   adding 'singlem-0.17.0.data/data/LICENCE.txt'
2024-05-11T23:03:55,279   adding 'singlem-0.17.0.data/data/README.md'
2024-05-11T23:03:55,290   adding 'singlem-0.17.0.data/scripts/singlem'
2024-05-11T23:03:55,298   adding 'singlem-0.17.0.dist-info/LICENCE.txt'
2024-05-11T23:03:55,299   adding 'singlem-0.17.0.dist-info/METADATA'
2024-05-11T23:03:55,301   adding 'singlem-0.17.0.dist-info/WHEEL'
2024-05-11T23:03:55,302   adding 'singlem-0.17.0.dist-info/top_level.txt'
2024-05-11T23:03:55,304   adding 'singlem-0.17.0.dist-info/RECORD'
2024-05-11T23:03:55,310   removing build/bdist.linux-armv7l/wheel
2024-05-11T23:03:55,447   Building wheel for singlem (setup.py): finished with status 'done'
2024-05-11T23:03:55,452   Created wheel for singlem: filename=singlem-0.17.0-py3-none-any.whl size=218567 sha256=b12f157af3e578d4a2bf5ab66f5f54ee0e66e9c9c611e08eace7e36119563e2a
2024-05-11T23:03:55,453   Stored in directory: /tmp/pip-ephem-wheel-cache-p60q43yv/wheels/8a/8f/de/dd9d6ff5248e312c12fb2e79cc965c75f5f033102d76feadb9
2024-05-11T23:03:55,466 Successfully built singlem
2024-05-11T23:03:55,476 Removed build tracker: '/tmp/pip-build-tracker-cgz98xd2'