2024-05-11T23:03:38,710 Created temporary directory: /tmp/pip-build-tracker-p2ura0ya 2024-05-11T23:03:38,712 Initialized build tracking at /tmp/pip-build-tracker-p2ura0ya 2024-05-11T23:03:38,712 Created build tracker: /tmp/pip-build-tracker-p2ura0ya 2024-05-11T23:03:38,713 Entered build tracker: /tmp/pip-build-tracker-p2ura0ya 2024-05-11T23:03:38,713 Created temporary directory: /tmp/pip-wheel-hmxjjlow 2024-05-11T23:03:38,717 Created temporary directory: /tmp/pip-ephem-wheel-cache-_n905ku0 2024-05-11T23:03:38,967 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-11T23:03:39,190 2 location(s) to search for versions of biom-format: 2024-05-11T23:03:39,190 * https://pypi.org/simple/biom-format/ 2024-05-11T23:03:39,190 * https://www.piwheels.org/simple/biom-format/ 2024-05-11T23:03:39,192 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2024-05-11T23:03:39,193 Getting page https://pypi.org/simple/biom-format/ 2024-05-11T23:03:39,197 Found index url https://pypi.org/simple/ 2024-05-11T23:03:39,463 Fetched page https://pypi.org/simple/biom-format/ as application/vnd.pypi.simple.v1+json 2024-05-11T23:03:39,471 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2024-05-11T23:03:39,472 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.3.0 2024-05-11T23:03:39,473 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.3.1 2024-05-11T23:03:39,473 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.0.0 2024-05-11T23:03:39,474 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.0.1 2024-05-11T23:03:39,475 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1 2024-05-11T23:03:39,476 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.1 2024-05-11T23:03:39,476 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.2 2024-05-11T23:03:39,477 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.3 2024-05-11T23:03:39,478 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.4 2024-05-11T23:03:39,479 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.5 2024-05-11T23:03:39,480 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.6 2024-05-11T23:03:39,480 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/biom-format/) 2024-05-11T23:03:39,482 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.7 2024-05-11T23:03:39,483 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/biom-format/) 2024-05-11T23:03:39,484 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2024-05-11T23:03:39,485 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.9 2024-05-11T23:03:39,486 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.10 2024-05-11T23:03:39,487 Found link https://files.pythonhosted.org/packages/fc/3f/7eb762b52f490b810b1686fd41cd6f3f7f33c0dab29c4273c96e9a1641a2/biom-format-2.1.12.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.12 2024-05-11T23:03:39,488 Found link https://files.pythonhosted.org/packages/90/57/0a326e17005b25e56f6e25b8b1e3eae299b7f6d53af06b11c4830d631612/biom-format-2.1.13.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.13 2024-05-11T23:03:39,489 Found link https://files.pythonhosted.org/packages/8e/2c/132267e58172821fc15fa3856f53ed09b607837fe06e2bb60b230005951d/biom-format-2.1.14.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.14 2024-05-11T23:03:39,490 Found link https://files.pythonhosted.org/packages/fc/db/daf7c3872dd49acf6233873fb6f1ab7b6ca324bba25bf28fc9cf7dfd4c7b/biom-format-2.1.15.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.15 2024-05-11T23:03:39,490 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/52/9b/f3d2fcc1d0141e86e08330c7516d750662f8a3df40c7f5ef8d633fc485b1/biom_format-2.1.15-cp310-cp310-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,491 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/69/1a/8346a46e7b68aa49a7303d8cf9a12c7c08ee1d0a2142f1066c906a99def0/biom_format-2.1.15-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,492 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/ed/d4/6e42221bbbfee00aa96692583cef753a3f0b455b26854fd7111740a81999/biom_format-2.1.15-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,493 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/0b/2d/18978cf47787f2435d2d288d58c76e891b466845f670ffc14cd5455aca94/biom_format-2.1.15-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,493 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/63/ad/148ed220742d9d8995805a86877867551733a01edaf8e95a214ad36e051e/biom_format-2.1.15-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,495 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/ae/b6/da4325213838fe4d078da9f73d913838959680217d2188b240818216113d/biom_format-2.1.15-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,496 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/2e/cf/4bc7592b3c48664c4c927547983814c4708c248ff3d753b0d60ac0ad7250/biom_format-2.1.15-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,499 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/7d/8a/6ea8c3bc9d61dcf46c6e7ccaf11ce07d46184a0b0e1ed31b8ec36db94e89/biom_format-2.1.15-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,500 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/ca/0d/64c1e729685aa1de049816f0972b9be78a9b8489a7b9ba1dc9ff6bc9f95e/biom_format-2.1.15-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,501 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/93/c5/5d6c2adce1ad1288c9d13a689971582fc556c5c3b7523c20b25dec4a8ae8/biom_format-2.1.15-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,501 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/74/bb/bdf0f58bcf7a6d287e94d94b3464263b62f04068f2109a4380efda6a025d/biom_format-2.1.15-cp38-cp38-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,502 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/14/fe/dc90a6ec894343130e40fca22c7c324fbd08d5f48559d2d7730cfa768a72/biom_format-2.1.15-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,504 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/9c/36/b2dcba3e20fe23f839e9641a9e5e600a342c422ab07bc54c6383a3980deb/biom_format-2.1.15-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,505 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/95/f4/65a3d3bdadff352d97e410173bcbf80ea5dfeefdf18588232d2029eac0d6/biom_format-2.1.15-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,506 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/0a/eb/5a836a2d9314e0a93db6c3cbb4f5a1019171ada3b8b0ff2e0c9bdbdcfc97/biom_format-2.1.15-cp39-cp39-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,507 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/4d/2a/9f1f3ea15f5894392ea77518f0982ebaac93b3c274c2762ea23defebf422/biom_format-2.1.15-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,508 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/c4/f0/53a3e6a04d281e67b3d2745b9a9163c6be3a11970cf5150d73037a6c3cca/biom_format-2.1.15-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,508 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/50/14/4bf1e8766a9e4df3c2945e0d70f960985c0886ebcd09fd7d95bebeba9ff1/biom_format-2.1.15-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,509 Found link https://files.pythonhosted.org/packages/62/88/d81eabe80aac30ba1fc5dfc7191e7825fcaf19b6564adafc0763d44873ac/biom-format-2.1.16.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.16 2024-05-11T23:03:39,510 Fetching project page and analyzing links: https://www.piwheels.org/simple/biom-format/ 2024-05-11T23:03:39,511 Getting page https://www.piwheels.org/simple/biom-format/ 2024-05-11T23:03:39,512 Found index url https://www.piwheels.org/simple/ 2024-05-11T23:03:39,765 Fetched page https://www.piwheels.org/simple/biom-format/ as text/html 2024-05-11T23:03:39,790 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.15-cp37-cp37m-linux_armv6l.whl#sha256=8c1abc435491cbae99b546242db95bb7579d6d1f8a07e35ec39af8e606858970 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,791 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.15-cp37-cp37m-linux_armv7l.whl#sha256=8c1abc435491cbae99b546242db95bb7579d6d1f8a07e35ec39af8e606858970 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,792 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.15-cp39-cp39-linux_armv6l.whl#sha256=c46bbbc0b12de30afe809971d36e1c6e15ab0145640243067ab25fd0ac7f371e (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,792 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.15-cp39-cp39-linux_armv7l.whl#sha256=c46bbbc0b12de30afe809971d36e1c6e15ab0145640243067ab25fd0ac7f371e (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,793 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.14-cp37-cp37m-linux_armv6l.whl#sha256=45dd2e44b2b46efdafb7678246b670cff402736187481b12f037d7f0c4d8f8e1 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,826 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.14-cp37-cp37m-linux_armv7l.whl#sha256=45dd2e44b2b46efdafb7678246b670cff402736187481b12f037d7f0c4d8f8e1 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,827 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.14-cp39-cp39-linux_armv6l.whl#sha256=ca23d062853e5ba6f0c54ba8cb321444b60c337ff96c5d08f2f365fdf3e7afc0 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,828 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.14-cp39-cp39-linux_armv7l.whl#sha256=ca23d062853e5ba6f0c54ba8cb321444b60c337ff96c5d08f2f365fdf3e7afc0 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,829 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.13-cp37-cp37m-linux_armv6l.whl#sha256=497b24d7afb924a1d676e19148c410da9bcf85cd8edb8a94151b5e550426311b (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,829 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.13-cp37-cp37m-linux_armv7l.whl#sha256=497b24d7afb924a1d676e19148c410da9bcf85cd8edb8a94151b5e550426311b (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,830 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.13-cp39-cp39-linux_armv6l.whl#sha256=80b341578111894f67221800901df758240597ef524df0db82477061329f821a (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,831 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.13-cp39-cp39-linux_armv7l.whl#sha256=80b341578111894f67221800901df758240597ef524df0db82477061329f821a (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,832 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.12-cp37-cp37m-linux_armv6l.whl#sha256=6f97ac7d6466366ba986e37645c2ac76da461d9badac0e14bc14275e0cd237d2 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,832 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.12-cp37-cp37m-linux_armv7l.whl#sha256=6f97ac7d6466366ba986e37645c2ac76da461d9badac0e14bc14275e0cd237d2 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-11T23:03:39,833 Skipping link: No binaries permitted for biom-format: 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https://www.piwheels.org/simple/biom-format/biom_format-1.2.0.dev0-py3-none-any.whl#sha256=1c6e81249da6f3e19dd7594733329820632b1b6b0355abe79af180116c3b8aba (from https://www.piwheels.org/simple/biom-format/) 2024-05-11T23:03:40,027 Skipping link: not a file: https://www.piwheels.org/simple/biom-format/ 2024-05-11T23:03:40,028 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2024-05-11T23:03:40,060 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2024-05-11T23:03:40,086 Collecting biom-format==2.1.16 2024-05-11T23:03:40,090 Created temporary directory: /tmp/pip-unpack-zrwr3651 2024-05-11T23:03:40,319 Downloading biom-format-2.1.16.tar.gz (11.7 MB) 2024-05-11T23:03:46,962 Added biom-format==2.1.16 from https://files.pythonhosted.org/packages/62/88/d81eabe80aac30ba1fc5dfc7191e7825fcaf19b6564adafc0763d44873ac/biom-format-2.1.16.tar.gz to build tracker '/tmp/pip-build-tracker-p2ura0ya' 2024-05-11T23:03:46,968 Created temporary directory: /tmp/pip-build-env-t40dt7hq 2024-05-11T23:03:46,972 Installing build dependencies: started 2024-05-11T23:03:46,973 Running command pip subprocess to install build dependencies 2024-05-11T23:03:48,165 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-11T23:03:48,668 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-11T23:03:50,179 Collecting setuptools 2024-05-11T23:03:50,195 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-11T23:03:50,449 Collecting wheel 2024-05-11T23:03:50,464 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-11T23:03:51,087 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-05-11T23:03:51,091 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-05-11T23:03:51,094 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-05-11T23:03:51,098 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-05-11T23:03:51,101 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-05-11T23:03:51,383 Collecting numpy 2024-05-11T23:03:51,401 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp311-cp311-linux_armv7l.whl (5.6 MB) 2024-05-11T23:03:52,922 Collecting cython 2024-05-11T23:03:52,938 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp311-cp311-linux_armv7l.whl (11.8 MB) 2024-05-11T23:03:56,161 Installing collected packages: wheel, setuptools, numpy, cython 2024-05-11T23:03:56,398 Creating /tmp/pip-build-env-t40dt7hq/overlay/local/bin 2024-05-11T23:03:56,400 changing mode of /tmp/pip-build-env-t40dt7hq/overlay/local/bin/wheel to 755 2024-05-11T23:04:10,444 changing mode of /tmp/pip-build-env-t40dt7hq/overlay/local/bin/f2py to 755 2024-05-11T23:04:14,584 changing mode of /tmp/pip-build-env-t40dt7hq/overlay/local/bin/cygdb to 755 2024-05-11T23:04:14,586 changing mode of /tmp/pip-build-env-t40dt7hq/overlay/local/bin/cython to 755 2024-05-11T23:04:14,588 changing mode of /tmp/pip-build-env-t40dt7hq/overlay/local/bin/cythonize to 755 2024-05-11T23:04:14,621 Successfully installed cython-3.0.10 numpy-1.26.4 setuptools-69.5.1 wheel-0.43.0 2024-05-11T23:04:15,288 Installing build dependencies: finished with status 'done' 2024-05-11T23:04:15,300 Getting requirements to build wheel: started 2024-05-11T23:04:15,301 Running command Getting requirements to build wheel 2024-05-11T23:04:17,805 /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-hmxjjlow/biom-format_6d9068fd0781428d8ad10f38fb9108ee/biom/_filter.pyx 2024-05-11T23:04:17,805 tree = Parsing.p_module(s, pxd, full_module_name) 2024-05-11T23:04:18,659 /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-hmxjjlow/biom-format_6d9068fd0781428d8ad10f38fb9108ee/biom/_subsample.pyx 2024-05-11T23:04:18,660 tree = Parsing.p_module(s, pxd, full_module_name) 2024-05-11T23:04:19,352 /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-hmxjjlow/biom-format_6d9068fd0781428d8ad10f38fb9108ee/biom/_transform.pyx 2024-05-11T23:04:19,353 tree = Parsing.p_module(s, pxd, full_module_name) 2024-05-11T23:04:19,856 Compiling biom/_filter.pyx because it changed. 2024-05-11T23:04:19,856 Compiling biom/_transform.pyx because it changed. 2024-05-11T23:04:19,857 Compiling biom/_subsample.pyx because it changed. 2024-05-11T23:04:19,857 [1/3] Cythonizing biom/_filter.pyx 2024-05-11T23:04:19,858 [2/3] Cythonizing biom/_subsample.pyx 2024-05-11T23:04:19,858 [3/3] Cythonizing biom/_transform.pyx 2024-05-11T23:04:19,951 running egg_info 2024-05-11T23:04:19,957 writing biom_format.egg-info/PKG-INFO 2024-05-11T23:04:19,962 writing dependency_links to biom_format.egg-info/dependency_links.txt 2024-05-11T23:04:19,965 writing entry points to biom_format.egg-info/entry_points.txt 2024-05-11T23:04:19,968 writing requirements to biom_format.egg-info/requires.txt 2024-05-11T23:04:19,970 writing top-level names to biom_format.egg-info/top_level.txt 2024-05-11T23:04:20,020 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,021 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,021 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,023 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,023 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,023 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,024 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,024 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,025 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,025 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,026 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,026 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,027 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,028 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,028 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:20,032 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2024-05-11T23:04:20,059 reading manifest template 'MANIFEST.in' 2024-05-11T23:04:20,070 warning: no directories found matching 'support_files' 2024-05-11T23:04:20,078 warning: no directories found matching 'tests/test_data' 2024-05-11T23:04:20,079 no previously-included directories found matching 'docs/_build' 2024-05-11T23:04:20,081 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-05-11T23:04:20,083 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-05-11T23:04:20,084 warning: no previously-included files matching '.git' found anywhere in distribution 2024-05-11T23:04:20,087 warning: no previously-included files matching '*.so' found anywhere in distribution 2024-05-11T23:04:20,089 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2024-05-11T23:04:20,090 adding license file 'COPYING.txt' 2024-05-11T23:04:20,100 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2024-05-11T23:04:20,508 Getting requirements to build wheel: finished with status 'done' 2024-05-11T23:04:20,520 Created temporary directory: /tmp/pip-modern-metadata-3s_llj2i 2024-05-11T23:04:20,522 Preparing metadata (pyproject.toml): started 2024-05-11T23:04:20,527 Running command Preparing metadata (pyproject.toml) 2024-05-11T23:04:22,395 running dist_info 2024-05-11T23:04:22,401 creating /tmp/pip-modern-metadata-3s_llj2i/biom_format.egg-info 2024-05-11T23:04:22,407 writing /tmp/pip-modern-metadata-3s_llj2i/biom_format.egg-info/PKG-INFO 2024-05-11T23:04:22,411 writing dependency_links to /tmp/pip-modern-metadata-3s_llj2i/biom_format.egg-info/dependency_links.txt 2024-05-11T23:04:22,413 writing entry points to /tmp/pip-modern-metadata-3s_llj2i/biom_format.egg-info/entry_points.txt 2024-05-11T23:04:22,415 writing requirements to /tmp/pip-modern-metadata-3s_llj2i/biom_format.egg-info/requires.txt 2024-05-11T23:04:22,416 writing top-level names to /tmp/pip-modern-metadata-3s_llj2i/biom_format.egg-info/top_level.txt 2024-05-11T23:04:22,417 writing manifest file '/tmp/pip-modern-metadata-3s_llj2i/biom_format.egg-info/SOURCES.txt' 2024-05-11T23:04:22,457 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,457 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,458 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,458 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,459 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,460 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,460 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,461 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,462 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,462 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,463 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,463 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,464 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,465 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,465 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:22,466 reading manifest file '/tmp/pip-modern-metadata-3s_llj2i/biom_format.egg-info/SOURCES.txt' 2024-05-11T23:04:22,467 reading manifest template 'MANIFEST.in' 2024-05-11T23:04:22,476 warning: no directories found matching 'support_files' 2024-05-11T23:04:22,481 warning: no directories found matching 'tests/test_data' 2024-05-11T23:04:22,482 no previously-included directories found matching 'docs/_build' 2024-05-11T23:04:22,483 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-05-11T23:04:22,484 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-05-11T23:04:22,485 warning: no previously-included files matching '.git' found anywhere in distribution 2024-05-11T23:04:22,487 warning: no previously-included files matching '*.so' found anywhere in distribution 2024-05-11T23:04:22,488 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2024-05-11T23:04:22,488 adding license file 'COPYING.txt' 2024-05-11T23:04:22,496 writing manifest file '/tmp/pip-modern-metadata-3s_llj2i/biom_format.egg-info/SOURCES.txt' 2024-05-11T23:04:22,497 creating '/tmp/pip-modern-metadata-3s_llj2i/biom_format-2.1.16.dist-info' 2024-05-11T23:04:22,766 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-11T23:04:22,770 Source in /tmp/pip-wheel-hmxjjlow/biom-format_6d9068fd0781428d8ad10f38fb9108ee has version 2.1.16, which satisfies requirement biom-format==2.1.16 from https://files.pythonhosted.org/packages/62/88/d81eabe80aac30ba1fc5dfc7191e7825fcaf19b6564adafc0763d44873ac/biom-format-2.1.16.tar.gz 2024-05-11T23:04:22,772 Removed biom-format==2.1.16 from https://files.pythonhosted.org/packages/62/88/d81eabe80aac30ba1fc5dfc7191e7825fcaf19b6564adafc0763d44873ac/biom-format-2.1.16.tar.gz from build tracker '/tmp/pip-build-tracker-p2ura0ya' 2024-05-11T23:04:22,777 Created temporary directory: /tmp/pip-unpack-b9nb92oq 2024-05-11T23:04:22,778 Created temporary directory: /tmp/pip-unpack-jsuwz4oq 2024-05-11T23:04:22,791 Building wheels for collected packages: biom-format 2024-05-11T23:04:22,796 Created temporary directory: /tmp/pip-wheel-djff7674 2024-05-11T23:04:22,797 Destination directory: /tmp/pip-wheel-djff7674 2024-05-11T23:04:22,799 Building wheel for biom-format (pyproject.toml): started 2024-05-11T23:04:22,800 Running command Building wheel for biom-format (pyproject.toml) 2024-05-11T23:04:24,691 running bdist_wheel 2024-05-11T23:04:24,742 running build 2024-05-11T23:04:24,743 running build_py 2024-05-11T23:04:24,751 creating build 2024-05-11T23:04:24,752 creating build/lib.linux-armv7l-cpython-311 2024-05-11T23:04:24,753 creating build/lib.linux-armv7l-cpython-311/biom 2024-05-11T23:04:24,754 copying biom/table.py -> build/lib.linux-armv7l-cpython-311/biom 2024-05-11T23:04:24,762 copying biom/util.py -> build/lib.linux-armv7l-cpython-311/biom 2024-05-11T23:04:24,765 copying biom/parse.py -> build/lib.linux-armv7l-cpython-311/biom 2024-05-11T23:04:24,767 copying biom/__init__.py -> build/lib.linux-armv7l-cpython-311/biom 2024-05-11T23:04:24,769 copying biom/err.py -> build/lib.linux-armv7l-cpython-311/biom 2024-05-11T23:04:24,772 copying biom/exception.py -> build/lib.linux-armv7l-cpython-311/biom 2024-05-11T23:04:24,774 creating build/lib.linux-armv7l-cpython-311/biom/tests 2024-05-11T23:04:24,776 copying biom/tests/test_parse.py -> build/lib.linux-armv7l-cpython-311/biom/tests 2024-05-11T23:04:24,780 copying biom/tests/long_lines.py -> build/lib.linux-armv7l-cpython-311/biom/tests 2024-05-11T23:04:24,782 copying biom/tests/test_err.py -> build/lib.linux-armv7l-cpython-311/biom/tests 2024-05-11T23:04:24,785 copying biom/tests/test_table.py -> build/lib.linux-armv7l-cpython-311/biom/tests 2024-05-11T23:04:24,793 copying biom/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/tests 2024-05-11T23:04:24,796 copying biom/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/biom/tests 2024-05-11T23:04:24,799 creating build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,800 copying biom/cli/metadata_exporter.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,802 copying biom/cli/installation_informer.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,803 copying biom/cli/table_normalizer.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,805 copying biom/cli/uc_processor.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,807 copying biom/cli/util.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,808 copying biom/cli/table_validator.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,811 copying biom/cli/table_head.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,812 copying biom/cli/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,814 copying biom/cli/table_summarizer.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,816 copying biom/cli/table_subsetter.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,818 copying biom/cli/metadata_adder.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,820 copying biom/cli/table_converter.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,823 copying biom/cli/table_ids.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2024-05-11T23:04:24,825 creating build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2024-05-11T23:04:24,826 copying biom/tests/test_data/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2024-05-11T23:04:24,828 creating build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2024-05-11T23:04:24,829 copying biom/tests/test_cli/test_subset_table.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2024-05-11T23:04:24,831 copying biom/tests/test_cli/test_show_install_info.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2024-05-11T23:04:24,833 copying biom/tests/test_cli/test_table_converter.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2024-05-11T23:04:24,835 copying biom/tests/test_cli/test_summarize_table.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2024-05-11T23:04:24,837 copying biom/tests/test_cli/test_validate_table.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2024-05-11T23:04:24,840 copying biom/tests/test_cli/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2024-05-11T23:04:24,842 copying biom/tests/test_cli/test_add_metadata.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2024-05-11T23:04:24,845 copying biom/tests/test_cli/test_table_normalizer.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2024-05-11T23:04:24,847 copying biom/tests/test_cli/test_uc_processor.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2024-05-11T23:04:24,848 running egg_info 2024-05-11T23:04:24,854 writing biom_format.egg-info/PKG-INFO 2024-05-11T23:04:24,858 writing dependency_links to biom_format.egg-info/dependency_links.txt 2024-05-11T23:04:24,859 writing entry points to biom_format.egg-info/entry_points.txt 2024-05-11T23:04:24,861 writing requirements to biom_format.egg-info/requires.txt 2024-05-11T23:04:24,862 writing top-level names to biom_format.egg-info/top_level.txt 2024-05-11T23:04:24,870 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,871 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,871 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,872 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,873 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,873 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,874 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,874 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,875 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,876 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,877 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,877 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,878 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,879 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,879 dependency /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-11T23:04:24,880 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2024-05-11T23:04:24,886 reading manifest template 'MANIFEST.in' 2024-05-11T23:04:24,895 warning: no directories found matching 'support_files' 2024-05-11T23:04:24,900 warning: no directories found matching 'tests/test_data' 2024-05-11T23:04:24,900 no previously-included directories found matching 'docs/_build' 2024-05-11T23:04:24,902 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-05-11T23:04:24,903 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-05-11T23:04:24,905 warning: no previously-included files matching '.git' found anywhere in distribution 2024-05-11T23:04:24,908 warning: no previously-included files matching '*.so' found anywhere in distribution 2024-05-11T23:04:24,909 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2024-05-11T23:04:24,910 adding license file 'COPYING.txt' 2024-05-11T23:04:24,921 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2024-05-11T23:04:24,923 /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'biom.assets' is absent from the `packages` configuration. 2024-05-11T23:04:24,924 !! 2024-05-11T23:04:24,925 ******************************************************************************** 2024-05-11T23:04:24,925 ############################ 2024-05-11T23:04:24,926 # Package would be ignored # 2024-05-11T23:04:24,926 ############################ 2024-05-11T23:04:24,926 Python recognizes 'biom.assets' as an importable package[^1], 2024-05-11T23:04:24,927 but it is absent from setuptools' `packages` configuration. 2024-05-11T23:04:24,928 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-11T23:04:24,928 package, please make sure that 'biom.assets' is explicitly added 2024-05-11T23:04:24,929 to the `packages` configuration field. 2024-05-11T23:04:24,929 Alternatively, you can also rely on setuptools' discovery methods 2024-05-11T23:04:24,930 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-11T23:04:24,930 instead of `find_packages(...)`/`find:`). 2024-05-11T23:04:24,931 You can read more about "package discovery" on setuptools documentation page: 2024-05-11T23:04:24,932 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-11T23:04:24,933 If you don't want 'biom.assets' to be distributed and are 2024-05-11T23:04:24,934 already explicitly excluding 'biom.assets' via 2024-05-11T23:04:24,934 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-11T23:04:24,935 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-11T23:04:24,935 combination with a more fine grained `package-data` configuration. 2024-05-11T23:04:24,937 You can read more about "package data files" on setuptools documentation page: 2024-05-11T23:04:24,938 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-11T23:04:24,940 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-11T23:04:24,940 even if it does not contain any `.py` files. 2024-05-11T23:04:24,941 On the other hand, currently there is no concept of package data 2024-05-11T23:04:24,941 directory, all directories are treated like packages. 2024-05-11T23:04:24,942 ******************************************************************************** 2024-05-11T23:04:24,943 !! 2024-05-11T23:04:24,944 check.warn(importable) 2024-05-11T23:04:24,945 /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. 2024-05-11T23:04:24,945 !! 2024-05-11T23:04:24,947 ******************************************************************************** 2024-05-11T23:04:24,948 ############################ 2024-05-11T23:04:24,949 # Package would be ignored # 2024-05-11T23:04:24,950 ############################ 2024-05-11T23:04:24,950 Python recognizes 'biom.tests.bench_tables' as an importable package[^1], 2024-05-11T23:04:24,951 but it is absent from setuptools' `packages` configuration. 2024-05-11T23:04:24,952 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-11T23:04:24,952 package, please make sure that 'biom.tests.bench_tables' is explicitly added 2024-05-11T23:04:24,953 to the `packages` configuration field. 2024-05-11T23:04:24,954 Alternatively, you can also rely on setuptools' discovery methods 2024-05-11T23:04:24,955 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-11T23:04:24,956 instead of `find_packages(...)`/`find:`). 2024-05-11T23:04:24,957 You can read more about "package discovery" on setuptools documentation page: 2024-05-11T23:04:24,958 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-11T23:04:24,960 If you don't want 'biom.tests.bench_tables' to be distributed and are 2024-05-11T23:04:24,961 already explicitly excluding 'biom.tests.bench_tables' via 2024-05-11T23:04:24,961 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-11T23:04:24,962 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-11T23:04:24,963 combination with a more fine grained `package-data` configuration. 2024-05-11T23:04:24,964 You can read more about "package data files" on setuptools documentation page: 2024-05-11T23:04:24,970 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-11T23:04:24,972 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-11T23:04:24,972 even if it does not contain any `.py` files. 2024-05-11T23:04:24,973 On the other hand, currently there is no concept of package data 2024-05-11T23:04:24,973 directory, all directories are treated like packages. 2024-05-11T23:04:24,974 ******************************************************************************** 2024-05-11T23:04:24,975 !! 2024-05-11T23:04:24,975 check.warn(importable) 2024-05-11T23:04:24,976 /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. 2024-05-11T23:04:24,976 !! 2024-05-11T23:04:24,977 ******************************************************************************** 2024-05-11T23:04:24,978 ############################ 2024-05-11T23:04:24,978 # Package would be ignored # 2024-05-11T23:04:24,979 ############################ 2024-05-11T23:04:24,980 Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], 2024-05-11T23:04:24,981 but it is absent from setuptools' `packages` configuration. 2024-05-11T23:04:24,982 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-11T23:04:24,983 package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added 2024-05-11T23:04:24,984 to the `packages` configuration field. 2024-05-11T23:04:24,986 Alternatively, you can also rely on setuptools' discovery methods 2024-05-11T23:04:24,987 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-11T23:04:24,989 instead of `find_packages(...)`/`find:`). 2024-05-11T23:04:24,991 You can read more about "package discovery" on setuptools documentation page: 2024-05-11T23:04:24,992 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-11T23:04:24,994 If you don't want 'biom.tests.test_cli.test_data' to be distributed and are 2024-05-11T23:04:24,995 already explicitly excluding 'biom.tests.test_cli.test_data' via 2024-05-11T23:04:24,996 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-11T23:04:24,996 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-11T23:04:24,997 combination with a more fine grained `package-data` configuration. 2024-05-11T23:04:24,999 You can read more about "package data files" on setuptools documentation page: 2024-05-11T23:04:25,000 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-11T23:04:25,002 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-11T23:04:25,003 even if it does not contain any `.py` files. 2024-05-11T23:04:25,004 On the other hand, currently there is no concept of package data 2024-05-11T23:04:25,004 directory, all directories are treated like packages. 2024-05-11T23:04:25,004 ******************************************************************************** 2024-05-11T23:04:25,005 !! 2024-05-11T23:04:25,006 check.warn(importable) 2024-05-11T23:04:25,006 copying biom/_filter.pyx -> build/lib.linux-armv7l-cpython-311/biom 2024-05-11T23:04:25,008 copying biom/_subsample.pyx -> build/lib.linux-armv7l-cpython-311/biom 2024-05-11T23:04:25,013 copying biom/_transform.pyx -> build/lib.linux-armv7l-cpython-311/biom 2024-05-11T23:04:25,019 creating build/lib.linux-armv7l-cpython-311/biom/assets 2024-05-11T23:04:25,036 copying biom/assets/exercise_api.py -> build/lib.linux-armv7l-cpython-311/biom/assets 2024-05-11T23:04:25,045 copying biom/assets/exercise_cli.sh -> build/lib.linux-armv7l-cpython-311/biom/assets 2024-05-11T23:04:25,046 creating build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,047 copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,047 copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,048 copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,048 copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,064 copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,534 copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,727 copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,731 copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,744 copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,799 copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,814 copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,881 copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,959 copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,963 copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,975 copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:25,981 copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,041 copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,051 copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,071 copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,075 copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,134 copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,138 copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,205 copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,215 copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,237 copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,243 copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,264 copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,279 copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,302 copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,439 copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,853 copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,856 copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,861 copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,864 copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,870 copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,880 copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,919 copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,921 copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,927 copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,930 copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,936 copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,941 copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,949 copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,951 copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,957 copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,960 copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,969 copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:26,976 copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,029 copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,034 copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,064 copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,068 copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,078 copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,087 copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,104 copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,107 copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,111 copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,114 copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,119 copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,122 copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,127 copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,129 copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,133 copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,135 copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,140 copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,143 copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,147 copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,150 copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,153 copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,156 copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,159 copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,162 copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,165 copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,168 copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,180 copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,185 copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,193 copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,197 copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,207 copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,209 copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,213 copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,216 copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,224 copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,228 copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,235 copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,238 copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,243 copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,247 copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,252 copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,255 copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,260 copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,263 copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,269 copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,272 copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,279 copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,283 copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2024-05-11T23:04:27,288 copying biom/tests/test_data/bad_table.txt -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2024-05-11T23:04:27,291 copying biom/tests/test_data/bad_table.txt.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2024-05-11T23:04:27,294 copying biom/tests/test_data/edgecase_issue_952.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2024-05-11T23:04:27,302 copying biom/tests/test_data/empty.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2024-05-11T23:04:27,308 copying biom/tests/test_data/no-contents.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2024-05-11T23:04:27,312 copying biom/tests/test_data/test.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2024-05-11T23:04:27,318 copying biom/tests/test_data/test.json -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2024-05-11T23:04:27,323 copying biom/tests/test_data/test.json.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2024-05-11T23:04:27,327 copying biom/tests/test_data/test_grp_metadata.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2024-05-11T23:04:27,333 creating build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data 2024-05-11T23:04:27,334 copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data 2024-05-11T23:04:27,337 copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data 2024-05-11T23:04:27,341 copying biom/tests/test_cli/test_data/test.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data 2024-05-11T23:04:27,349 copying biom/tests/test_cli/test_data/test.json -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data 2024-05-11T23:04:27,356 running build_ext 2024-05-11T23:04:27,366 building 'biom._filter' extension 2024-05-11T23:04:27,366 creating build/temp.linux-armv7l-cpython-311 2024-05-11T23:04:27,367 creating build/temp.linux-armv7l-cpython-311/biom 2024-05-11T23:04:27,368 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c biom/_filter.c -o build/temp.linux-armv7l-cpython-311/biom/_filter.o 2024-05-11T23:04:27,784 In file included from /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-05-11T23:04:27,785 from /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-05-11T23:04:27,785 from /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-05-11T23:04:27,786 from biom/_filter.c:1249: 2024-05-11T23:04:27,786 /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-05-11T23:04:27,787 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-05-11T23:04:27,788 | ^~~~~~~ 2024-05-11T23:04:38,220 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/biom/_filter.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biom/_filter.cpython-311-arm-linux-gnueabihf.so 2024-05-11T23:04:38,340 building 'biom._transform' extension 2024-05-11T23:04:38,341 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c biom/_transform.c -o build/temp.linux-armv7l-cpython-311/biom/_transform.o 2024-05-11T23:04:38,987 In file included from /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-05-11T23:04:38,987 from /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-05-11T23:04:38,988 from /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-05-11T23:04:38,989 from biom/_transform.c:1249: 2024-05-11T23:04:38,990 /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-05-11T23:04:38,991 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-05-11T23:04:38,991 | ^~~~~~~ 2024-05-11T23:04:44,423 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/biom/_transform.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biom/_transform.cpython-311-arm-linux-gnueabihf.so 2024-05-11T23:04:44,533 building 'biom._subsample' extension 2024-05-11T23:04:44,533 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c biom/_subsample.c -o build/temp.linux-armv7l-cpython-311/biom/_subsample.o 2024-05-11T23:04:44,947 In file included from /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-05-11T23:04:44,948 from /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-05-11T23:04:44,948 from /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-05-11T23:04:44,949 from biom/_subsample.c:1249: 2024-05-11T23:04:44,950 /tmp/pip-build-env-t40dt7hq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-05-11T23:04:44,950 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-05-11T23:04:44,951 | ^~~~~~~ 2024-05-11T23:04:52,771 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/biom/_subsample.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biom/_subsample.cpython-311-arm-linux-gnueabihf.so 2024-05-11T23:04:52,920 installing to build/bdist.linux-armv7l/wheel 2024-05-11T23:04:52,921 running install 2024-05-11T23:04:52,947 running install_lib 2024-05-11T23:04:52,957 creating build/bdist.linux-armv7l 2024-05-11T23:04:52,957 creating build/bdist.linux-armv7l/wheel 2024-05-11T23:04:52,959 creating build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:52,960 copying build/lib.linux-armv7l-cpython-311/biom/_subsample.pyx -> build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:52,963 creating build/bdist.linux-armv7l/wheel/biom/tests 2024-05-11T23:04:52,964 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_parse.py -> build/bdist.linux-armv7l/wheel/biom/tests 2024-05-11T23:04:52,968 copying build/lib.linux-armv7l-cpython-311/biom/tests/long_lines.py -> build/bdist.linux-armv7l/wheel/biom/tests 2024-05-11T23:04:52,970 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_err.py -> build/bdist.linux-armv7l/wheel/biom/tests 2024-05-11T23:04:52,975 creating build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:52,976 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:52,978 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,124 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,131 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,186 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,190 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,192 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,215 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,226 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,367 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,416 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,420 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,503 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,514 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,517 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,521 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,527 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,532 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,535 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,537 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,540 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,609 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:53,612 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,436 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,440 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,444 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,457 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,460 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,462 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,465 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,469 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,471 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,473 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,475 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,478 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,491 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,493 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,519 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,525 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,529 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,586 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,597 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,600 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,629 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,631 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,668 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,671 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,682 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,699 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,701 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,751 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,754 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,758 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,764 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,808 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,810 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,817 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,824 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,869 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,875 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,918 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,978 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,982 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:54,988 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,044 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,048 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,051 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,057 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,072 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,080 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,083 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,086 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,094 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,099 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,107 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,123 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,286 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,336 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,358 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,365 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,373 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,376 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,389 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,401 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,405 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,409 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,414 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,418 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,422 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,427 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,433 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,437 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,455 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,459 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,465 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,480 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-11T23:04:55,484 creating build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-11T23:04:55,486 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/test.json.gz -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-11T23:04:55,488 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/bad_table.txt -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-11T23:04:55,490 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/no-contents.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-11T23:04:55,492 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/test.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-11T23:04:55,496 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/edgecase_issue_952.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-11T23:04:55,499 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/test.json -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-11T23:04:55,502 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-11T23:04:55,504 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/test_grp_metadata.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-11T23:04:55,507 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/empty.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-11T23:04:55,510 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/bad_table.txt.gz -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-11T23:04:55,512 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_table.py -> build/bdist.linux-armv7l/wheel/biom/tests 2024-05-11T23:04:55,521 copying build/lib.linux-armv7l-cpython-311/biom/tests/__init__.py -> build/bdist.linux-armv7l/wheel/biom/tests 2024-05-11T23:04:55,524 creating build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-11T23:04:55,525 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_subset_table.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-11T23:04:55,529 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-11T23:04:55,531 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_table_converter.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-11T23:04:55,567 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-11T23:04:55,570 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_validate_table.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-11T23:04:55,787 creating build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2024-05-11T23:04:55,788 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2024-05-11T23:04:55,791 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2024-05-11T23:04:55,793 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data/test.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2024-05-11T23:04:55,798 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data/test.json -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2024-05-11T23:04:55,801 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/__init__.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-11T23:04:55,803 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-11T23:04:55,810 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-11T23:04:55,812 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_uc_processor.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-11T23:04:55,814 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_util.py -> build/bdist.linux-armv7l/wheel/biom/tests 2024-05-11T23:04:55,817 copying build/lib.linux-armv7l-cpython-311/biom/_transform.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:55,826 copying build/lib.linux-armv7l-cpython-311/biom/_subsample.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:55,839 copying build/lib.linux-armv7l-cpython-311/biom/table.py -> build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:55,848 copying build/lib.linux-armv7l-cpython-311/biom/util.py -> build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:55,854 creating build/bdist.linux-armv7l/wheel/biom/assets 2024-05-11T23:04:55,856 copying build/lib.linux-armv7l-cpython-311/biom/assets/exercise_api.py -> build/bdist.linux-armv7l/wheel/biom/assets 2024-05-11T23:04:55,861 copying build/lib.linux-armv7l-cpython-311/biom/assets/exercise_cli.sh -> build/bdist.linux-armv7l/wheel/biom/assets 2024-05-11T23:04:55,863 copying build/lib.linux-armv7l-cpython-311/biom/parse.py -> build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:55,867 creating build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,869 copying build/lib.linux-armv7l-cpython-311/biom/cli/metadata_exporter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,871 copying build/lib.linux-armv7l-cpython-311/biom/cli/installation_informer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,873 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,875 copying build/lib.linux-armv7l-cpython-311/biom/cli/uc_processor.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,877 copying build/lib.linux-armv7l-cpython-311/biom/cli/util.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,880 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_validator.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,883 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_head.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,886 copying build/lib.linux-armv7l-cpython-311/biom/cli/__init__.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,888 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_summarizer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,891 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_subsetter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,894 copying build/lib.linux-armv7l-cpython-311/biom/cli/metadata_adder.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,897 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_converter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,900 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_ids.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-11T23:04:55,902 copying build/lib.linux-armv7l-cpython-311/biom/__init__.py -> build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:55,905 copying build/lib.linux-armv7l-cpython-311/biom/_filter.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:55,918 copying build/lib.linux-armv7l-cpython-311/biom/err.py -> build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:55,921 copying build/lib.linux-armv7l-cpython-311/biom/_transform.pyx -> build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:55,924 copying build/lib.linux-armv7l-cpython-311/biom/exception.py -> build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:55,926 copying build/lib.linux-armv7l-cpython-311/biom/_filter.pyx -> build/bdist.linux-armv7l/wheel/biom 2024-05-11T23:04:55,928 running install_egg_info 2024-05-11T23:04:55,947 Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/biom_format-2.1.16-py3.11.egg-info 2024-05-11T23:04:55,962 running install_scripts 2024-05-11T23:04:56,017 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.16.dist-info/WHEEL 2024-05-11T23:04:56,020 creating '/tmp/pip-wheel-djff7674/.tmp-tcel6gkq/biom_format-2.1.16-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-11T23:04:56,023 adding 'biom/__init__.py' 2024-05-11T23:04:56,120 adding 'biom/_filter.cpython-311-arm-linux-gnueabihf.so' 2024-05-11T23:04:56,124 adding 'biom/_filter.pyx' 2024-05-11T23:04:56,201 adding 'biom/_subsample.cpython-311-arm-linux-gnueabihf.so' 2024-05-11T23:04:56,206 adding 'biom/_subsample.pyx' 2024-05-11T23:04:56,264 adding 'biom/_transform.cpython-311-arm-linux-gnueabihf.so' 2024-05-11T23:04:56,268 adding 'biom/_transform.pyx' 2024-05-11T23:04:56,271 adding 'biom/err.py' 2024-05-11T23:04:56,272 adding 'biom/exception.py' 2024-05-11T23:04:56,276 adding 'biom/parse.py' 2024-05-11T23:04:56,299 adding 'biom/table.py' 2024-05-11T23:04:56,303 adding 'biom/util.py' 2024-05-11T23:04:56,305 adding 'biom/assets/exercise_api.py' 2024-05-11T23:04:56,307 adding 'biom/assets/exercise_cli.sh' 2024-05-11T23:04:56,309 adding 'biom/cli/__init__.py' 2024-05-11T23:04:56,310 adding 'biom/cli/installation_informer.py' 2024-05-11T23:04:56,312 adding 'biom/cli/metadata_adder.py' 2024-05-11T23:04:56,314 adding 'biom/cli/metadata_exporter.py' 2024-05-11T23:04:56,316 adding 'biom/cli/table_converter.py' 2024-05-11T23:04:56,318 adding 'biom/cli/table_head.py' 2024-05-11T23:04:56,319 adding 'biom/cli/table_ids.py' 2024-05-11T23:04:56,321 adding 'biom/cli/table_normalizer.py' 2024-05-11T23:04:56,323 adding 'biom/cli/table_subsetter.py' 2024-05-11T23:04:56,325 adding 'biom/cli/table_summarizer.py' 2024-05-11T23:04:56,327 adding 'biom/cli/table_validator.py' 2024-05-11T23:04:56,329 adding 'biom/cli/uc_processor.py' 2024-05-11T23:04:56,331 adding 'biom/cli/util.py' 2024-05-11T23:04:56,333 adding 'biom/tests/__init__.py' 2024-05-11T23:04:56,335 adding 'biom/tests/long_lines.py' 2024-05-11T23:04:56,337 adding 'biom/tests/test_err.py' 2024-05-11T23:04:56,341 adding 'biom/tests/test_parse.py' 2024-05-11T23:04:56,357 adding 'biom/tests/test_table.py' 2024-05-11T23:04:56,361 adding 'biom/tests/test_util.py' 2024-05-11T23:04:56,373 adding 'biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz' 2024-05-11T23:04:56,476 adding 'biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz' 2024-05-11T23:04:56,559 adding 'biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz' 2024-05-11T23:04:56,693 adding 'biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz' 2024-05-11T23:04:57,231 adding 'biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz' 2024-05-11T23:04:57,711 adding 'biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz' 2024-05-11T23:04:57,745 adding 'biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz' 2024-05-11T23:04:57,803 adding 'biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz' 2024-05-11T23:04:57,834 adding 'biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz' 2024-05-11T23:04:57,910 adding 'biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz' 2024-05-11T23:04:58,160 adding 'biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz' 2024-05-11T23:04:58,421 adding 'biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz' 2024-05-11T23:04:58,436 adding 'biom/tests/bench_tables/10000x100x0.001_bench.biom.gz' 2024-05-11T23:04:58,485 adding 'biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz' 2024-05-11T23:04:58,492 adding 'biom/tests/bench_tables/10000x100x0.010_bench.biom.gz' 2024-05-11T23:04:58,543 adding 'biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz' 2024-05-11T23:04:58,564 adding 'biom/tests/bench_tables/10000x100x0.100_bench.biom.gz' 2024-05-11T23:04:58,628 adding 'biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz' 2024-05-11T23:04:58,634 adding 'biom/tests/bench_tables/10000x10x0.001_bench.biom.gz' 2024-05-11T23:04:58,683 adding 'biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz' 2024-05-11T23:04:58,688 adding 'biom/tests/bench_tables/10000x10x0.010_bench.biom.gz' 2024-05-11T23:04:58,737 adding 'biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz' 2024-05-11T23:04:58,743 adding 'biom/tests/bench_tables/10000x10x0.100_bench.biom.gz' 2024-05-11T23:04:58,793 adding 'biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz' 2024-05-11T23:04:58,801 adding 'biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz' 2024-05-11T23:04:58,856 adding 'biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz' 2024-05-11T23:04:58,896 adding 'biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz' 2024-05-11T23:04:58,975 adding 'biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz' 2024-05-11T23:04:59,275 adding 'biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz' 2024-05-11T23:04:59,610 adding 'biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz' 2024-05-11T23:04:59,628 adding 'biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz' 2024-05-11T23:04:59,638 adding 'biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz' 2024-05-11T23:04:59,642 adding 'biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz' 2024-05-11T23:04:59,652 adding 'biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz' 2024-05-11T23:04:59,662 adding 'biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz' 2024-05-11T23:04:59,675 adding 'biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz' 2024-05-11T23:04:59,678 adding 'biom/tests/bench_tables/1000x100x0.001_bench.biom.gz' 2024-05-11T23:04:59,685 adding 'biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz' 2024-05-11T23:04:59,688 adding 'biom/tests/bench_tables/1000x100x0.010_bench.biom.gz' 2024-05-11T23:04:59,695 adding 'biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz' 2024-05-11T23:04:59,700 adding 'biom/tests/bench_tables/1000x100x0.100_bench.biom.gz' 2024-05-11T23:04:59,708 adding 'biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz' 2024-05-11T23:04:59,713 adding 'biom/tests/bench_tables/1000x10x0.001_bench.biom.gz' 2024-05-11T23:04:59,720 adding 'biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz' 2024-05-11T23:04:59,724 adding 'biom/tests/bench_tables/1000x10x0.010_bench.biom.gz' 2024-05-11T23:04:59,732 adding 'biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz' 2024-05-11T23:04:59,736 adding 'biom/tests/bench_tables/1000x10x0.100_bench.biom.gz' 2024-05-11T23:04:59,743 adding 'biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz' 2024-05-11T23:04:59,746 adding 'biom/tests/bench_tables/100x10000x0.001_bench.biom.gz' 2024-05-11T23:04:59,795 adding 'biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz' 2024-05-11T23:04:59,803 adding 'biom/tests/bench_tables/100x10000x0.010_bench.biom.gz' 2024-05-11T23:04:59,855 adding 'biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz' 2024-05-11T23:04:59,888 adding 'biom/tests/bench_tables/100x10000x0.100_bench.biom.gz' 2024-05-11T23:04:59,974 adding 'biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz' 2024-05-11T23:04:59,979 adding 'biom/tests/bench_tables/100x1000x0.001_bench.biom.gz' 2024-05-11T23:04:59,986 adding 'biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz' 2024-05-11T23:04:59,988 adding 'biom/tests/bench_tables/100x1000x0.010_bench.biom.gz' 2024-05-11T23:04:59,995 adding 'biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz' 2024-05-11T23:04:59,999 adding 'biom/tests/bench_tables/100x1000x0.100_bench.biom.gz' 2024-05-11T23:05:00,007 adding 'biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz' 2024-05-11T23:05:00,010 adding 'biom/tests/bench_tables/100x100x0.001_bench.biom.gz' 2024-05-11T23:05:00,012 adding 'biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz' 2024-05-11T23:05:00,015 adding 'biom/tests/bench_tables/100x100x0.010_bench.biom.gz' 2024-05-11T23:05:00,018 adding 'biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz' 2024-05-11T23:05:00,020 adding 'biom/tests/bench_tables/100x100x0.100_bench.biom.gz' 2024-05-11T23:05:00,023 adding 'biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz' 2024-05-11T23:05:00,026 adding 'biom/tests/bench_tables/100x10x0.001_bench.biom.gz' 2024-05-11T23:05:00,030 adding 'biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz' 2024-05-11T23:05:00,033 adding 'biom/tests/bench_tables/100x10x0.010_bench.biom.gz' 2024-05-11T23:05:00,037 adding 'biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz' 2024-05-11T23:05:00,039 adding 'biom/tests/bench_tables/100x10x0.100_bench.biom.gz' 2024-05-11T23:05:00,042 adding 'biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz' 2024-05-11T23:05:00,044 adding 'biom/tests/bench_tables/10x10000x0.001_bench.biom.gz' 2024-05-11T23:05:00,093 adding 'biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz' 2024-05-11T23:05:00,097 adding 'biom/tests/bench_tables/10x10000x0.010_bench.biom.gz' 2024-05-11T23:05:00,146 adding 'biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz' 2024-05-11T23:05:00,153 adding 'biom/tests/bench_tables/10x10000x0.100_bench.biom.gz' 2024-05-11T23:05:00,203 adding 'biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz' 2024-05-11T23:05:00,207 adding 'biom/tests/bench_tables/10x1000x0.001_bench.biom.gz' 2024-05-11T23:05:00,213 adding 'biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz' 2024-05-11T23:05:00,216 adding 'biom/tests/bench_tables/10x1000x0.010_bench.biom.gz' 2024-05-11T23:05:00,221 adding 'biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz' 2024-05-11T23:05:00,224 adding 'biom/tests/bench_tables/10x1000x0.100_bench.biom.gz' 2024-05-11T23:05:00,230 adding 'biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz' 2024-05-11T23:05:00,232 adding 'biom/tests/bench_tables/10x100x0.001_bench.biom.gz' 2024-05-11T23:05:00,235 adding 'biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz' 2024-05-11T23:05:00,237 adding 'biom/tests/bench_tables/10x100x0.010_bench.biom.gz' 2024-05-11T23:05:00,240 adding 'biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz' 2024-05-11T23:05:00,241 adding 'biom/tests/bench_tables/10x100x0.100_bench.biom.gz' 2024-05-11T23:05:00,244 adding 'biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz' 2024-05-11T23:05:00,245 adding 'biom/tests/bench_tables/10x10x0.001_bench.biom.gz' 2024-05-11T23:05:00,248 adding 'biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz' 2024-05-11T23:05:00,249 adding 'biom/tests/bench_tables/10x10x0.010_bench.biom.gz' 2024-05-11T23:05:00,251 adding 'biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz' 2024-05-11T23:05:00,253 adding 'biom/tests/bench_tables/10x10x0.100_bench.biom.gz' 2024-05-11T23:05:00,255 adding 'biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz' 2024-05-11T23:05:00,257 adding 'biom/tests/test_cli/__init__.py' 2024-05-11T23:05:00,259 adding 'biom/tests/test_cli/test_add_metadata.py' 2024-05-11T23:05:00,260 adding 'biom/tests/test_cli/test_show_install_info.py' 2024-05-11T23:05:00,262 adding 'biom/tests/test_cli/test_subset_table.py' 2024-05-11T23:05:00,263 adding 'biom/tests/test_cli/test_summarize_table.py' 2024-05-11T23:05:00,265 adding 'biom/tests/test_cli/test_table_converter.py' 2024-05-11T23:05:00,266 adding 'biom/tests/test_cli/test_table_normalizer.py' 2024-05-11T23:05:00,268 adding 'biom/tests/test_cli/test_uc_processor.py' 2024-05-11T23:05:00,270 adding 'biom/tests/test_cli/test_validate_table.py' 2024-05-11T23:05:00,272 adding 'biom/tests/test_cli/test_data/json_obs_collapsed.biom' 2024-05-11T23:05:00,273 adding 'biom/tests/test_cli/test_data/json_sample_collapsed.biom' 2024-05-11T23:05:00,276 adding 'biom/tests/test_cli/test_data/test.biom' 2024-05-11T23:05:00,278 adding 'biom/tests/test_cli/test_data/test.json' 2024-05-11T23:05:00,280 adding 'biom/tests/test_data/__init__.py' 2024-05-11T23:05:00,280 adding 'biom/tests/test_data/bad_table.txt' 2024-05-11T23:05:00,282 adding 'biom/tests/test_data/bad_table.txt.gz' 2024-05-11T23:05:00,286 adding 'biom/tests/test_data/edgecase_issue_952.biom' 2024-05-11T23:05:00,288 adding 'biom/tests/test_data/empty.biom' 2024-05-11T23:05:00,289 adding 'biom/tests/test_data/no-contents.biom' 2024-05-11T23:05:00,292 adding 'biom/tests/test_data/test.biom' 2024-05-11T23:05:00,293 adding 'biom/tests/test_data/test.json' 2024-05-11T23:05:00,294 adding 'biom/tests/test_data/test.json.gz' 2024-05-11T23:05:00,297 adding 'biom/tests/test_data/test_grp_metadata.biom' 2024-05-11T23:05:00,300 adding 'biom_format-2.1.16.dist-info/COPYING.txt' 2024-05-11T23:05:00,302 adding 'biom_format-2.1.16.dist-info/METADATA' 2024-05-11T23:05:00,303 adding 'biom_format-2.1.16.dist-info/WHEEL' 2024-05-11T23:05:00,304 adding 'biom_format-2.1.16.dist-info/entry_points.txt' 2024-05-11T23:05:00,306 adding 'biom_format-2.1.16.dist-info/top_level.txt' 2024-05-11T23:05:00,308 adding 'biom_format-2.1.16.dist-info/RECORD' 2024-05-11T23:05:00,652 removing build/bdist.linux-armv7l/wheel 2024-05-11T23:05:00,923 Building wheel for biom-format (pyproject.toml): finished with status 'done' 2024-05-11T23:05:01,187 Created wheel for biom-format: filename=biom_format-2.1.16-cp311-cp311-linux_armv7l.whl size=12167941 sha256=0fd4eb0e548ab9c4a6d8ba5289823e098d1bb4a1e0f95712cea576868e1d7835 2024-05-11T23:05:01,189 Stored in directory: /tmp/pip-ephem-wheel-cache-_n905ku0/wheels/a5/6b/58/a879e8fbae2479a3d1a68719f3a062fe62701d6494f1b74f5e 2024-05-11T23:05:01,216 Successfully built biom-format 2024-05-11T23:05:02,084 Removed build tracker: '/tmp/pip-build-tracker-p2ura0ya'