2024-05-12T01:11:56,092 Created temporary directory: /tmp/pip-build-tracker-f7cgp99m 2024-05-12T01:11:56,094 Initialized build tracking at /tmp/pip-build-tracker-f7cgp99m 2024-05-12T01:11:56,094 Created build tracker: /tmp/pip-build-tracker-f7cgp99m 2024-05-12T01:11:56,094 Entered build tracker: /tmp/pip-build-tracker-f7cgp99m 2024-05-12T01:11:56,095 Created temporary directory: /tmp/pip-wheel-vzpg9e22 2024-05-12T01:11:56,099 Created temporary directory: /tmp/pip-ephem-wheel-cache-axkkxnlo 2024-05-12T01:11:56,126 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-12T01:11:56,130 2 location(s) to search for versions of biom-format: 2024-05-12T01:11:56,130 * https://pypi.org/simple/biom-format/ 2024-05-12T01:11:56,130 * https://www.piwheels.org/simple/biom-format/ 2024-05-12T01:11:56,130 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2024-05-12T01:11:56,131 Getting page https://pypi.org/simple/biom-format/ 2024-05-12T01:11:56,133 Found index url https://pypi.org/simple/ 2024-05-12T01:11:56,185 Fetched page https://pypi.org/simple/biom-format/ as application/vnd.pypi.simple.v1+json 2024-05-12T01:11:56,193 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2024-05-12T01:11:56,194 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.3.0 2024-05-12T01:11:56,194 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.3.1 2024-05-12T01:11:56,194 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.0.0 2024-05-12T01:11:56,195 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.0.1 2024-05-12T01:11:56,195 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1 2024-05-12T01:11:56,195 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.1 2024-05-12T01:11:56,196 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.2 2024-05-12T01:11:56,196 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.3 2024-05-12T01:11:56,196 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.4 2024-05-12T01:11:56,197 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.5 2024-05-12T01:11:56,197 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.6 2024-05-12T01:11:56,197 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/biom-format/) 2024-05-12T01:11:56,197 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.7 2024-05-12T01:11:56,198 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/biom-format/) 2024-05-12T01:11:56,198 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2024-05-12T01:11:56,198 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.9 2024-05-12T01:11:56,198 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.10 2024-05-12T01:11:56,199 Found link https://files.pythonhosted.org/packages/fc/3f/7eb762b52f490b810b1686fd41cd6f3f7f33c0dab29c4273c96e9a1641a2/biom-format-2.1.12.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.12 2024-05-12T01:11:56,200 Found link https://files.pythonhosted.org/packages/90/57/0a326e17005b25e56f6e25b8b1e3eae299b7f6d53af06b11c4830d631612/biom-format-2.1.13.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.13 2024-05-12T01:11:56,200 Found link https://files.pythonhosted.org/packages/8e/2c/132267e58172821fc15fa3856f53ed09b607837fe06e2bb60b230005951d/biom-format-2.1.14.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.14 2024-05-12T01:11:56,201 Found link https://files.pythonhosted.org/packages/fc/db/daf7c3872dd49acf6233873fb6f1ab7b6ca324bba25bf28fc9cf7dfd4c7b/biom-format-2.1.15.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.15 2024-05-12T01:11:56,201 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/52/9b/f3d2fcc1d0141e86e08330c7516d750662f8a3df40c7f5ef8d633fc485b1/biom_format-2.1.15-cp310-cp310-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,201 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/69/1a/8346a46e7b68aa49a7303d8cf9a12c7c08ee1d0a2142f1066c906a99def0/biom_format-2.1.15-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,201 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/ed/d4/6e42221bbbfee00aa96692583cef753a3f0b455b26854fd7111740a81999/biom_format-2.1.15-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,202 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/0b/2d/18978cf47787f2435d2d288d58c76e891b466845f670ffc14cd5455aca94/biom_format-2.1.15-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,202 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/63/ad/148ed220742d9d8995805a86877867551733a01edaf8e95a214ad36e051e/biom_format-2.1.15-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,202 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/ae/b6/da4325213838fe4d078da9f73d913838959680217d2188b240818216113d/biom_format-2.1.15-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,202 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/2e/cf/4bc7592b3c48664c4c927547983814c4708c248ff3d753b0d60ac0ad7250/biom_format-2.1.15-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,202 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/7d/8a/6ea8c3bc9d61dcf46c6e7ccaf11ce07d46184a0b0e1ed31b8ec36db94e89/biom_format-2.1.15-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,203 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/ca/0d/64c1e729685aa1de049816f0972b9be78a9b8489a7b9ba1dc9ff6bc9f95e/biom_format-2.1.15-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,203 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/93/c5/5d6c2adce1ad1288c9d13a689971582fc556c5c3b7523c20b25dec4a8ae8/biom_format-2.1.15-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,203 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/74/bb/bdf0f58bcf7a6d287e94d94b3464263b62f04068f2109a4380efda6a025d/biom_format-2.1.15-cp38-cp38-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,203 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/14/fe/dc90a6ec894343130e40fca22c7c324fbd08d5f48559d2d7730cfa768a72/biom_format-2.1.15-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,203 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/9c/36/b2dcba3e20fe23f839e9641a9e5e600a342c422ab07bc54c6383a3980deb/biom_format-2.1.15-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,204 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/95/f4/65a3d3bdadff352d97e410173bcbf80ea5dfeefdf18588232d2029eac0d6/biom_format-2.1.15-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,204 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/0a/eb/5a836a2d9314e0a93db6c3cbb4f5a1019171ada3b8b0ff2e0c9bdbdcfc97/biom_format-2.1.15-cp39-cp39-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,204 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/4d/2a/9f1f3ea15f5894392ea77518f0982ebaac93b3c274c2762ea23defebf422/biom_format-2.1.15-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,204 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/c4/f0/53a3e6a04d281e67b3d2745b9a9163c6be3a11970cf5150d73037a6c3cca/biom_format-2.1.15-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,204 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/50/14/4bf1e8766a9e4df3c2945e0d70f960985c0886ebcd09fd7d95bebeba9ff1/biom_format-2.1.15-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,205 Found link https://files.pythonhosted.org/packages/62/88/d81eabe80aac30ba1fc5dfc7191e7825fcaf19b6564adafc0763d44873ac/biom-format-2.1.16.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.16 2024-05-12T01:11:56,205 Fetching project page and analyzing links: https://www.piwheels.org/simple/biom-format/ 2024-05-12T01:11:56,206 Getting page https://www.piwheels.org/simple/biom-format/ 2024-05-12T01:11:56,207 Found index url https://www.piwheels.org/simple/ 2024-05-12T01:11:56,359 Fetched page https://www.piwheels.org/simple/biom-format/ as text/html 2024-05-12T01:11:56,387 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.16-cp311-cp311-linux_armv6l.whl#sha256=0fd4eb0e548ab9c4a6d8ba5289823e098d1bb4a1e0f95712cea576868e1d7835 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,387 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.16-cp311-cp311-linux_armv7l.whl#sha256=0fd4eb0e548ab9c4a6d8ba5289823e098d1bb4a1e0f95712cea576868e1d7835 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,387 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.16-cp37-cp37m-linux_armv6l.whl#sha256=c8dafe1c0c82befe9008ee1e286b6e966bbd5215d59c6e2c510157d2ed112a39 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,387 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.16-cp37-cp37m-linux_armv7l.whl#sha256=c8dafe1c0c82befe9008ee1e286b6e966bbd5215d59c6e2c510157d2ed112a39 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,388 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.15-cp37-cp37m-linux_armv6l.whl#sha256=8c1abc435491cbae99b546242db95bb7579d6d1f8a07e35ec39af8e606858970 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,388 Skipping link: No binaries permitted for biom-format: 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https://www.piwheels.org/simple/biom-format/biom_format-2.1.14-cp39-cp39-linux_armv7l.whl#sha256=ca23d062853e5ba6f0c54ba8cb321444b60c337ff96c5d08f2f365fdf3e7afc0 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,389 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.13-cp37-cp37m-linux_armv6l.whl#sha256=497b24d7afb924a1d676e19148c410da9bcf85cd8edb8a94151b5e550426311b (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,389 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.13-cp37-cp37m-linux_armv7l.whl#sha256=497b24d7afb924a1d676e19148c410da9bcf85cd8edb8a94151b5e550426311b (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2024-05-12T01:11:56,390 Skipping link: No binaries permitted for biom-format: 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https://www.piwheels.org/simple/biom-format/biom_format-1.3.0-py3-none-any.whl#sha256=ee9d81bea91a7c7da55697863c1b003aca4d14b7f7416fcb8c22e169e54aabe6 (from https://www.piwheels.org/simple/biom-format/) 2024-05-12T01:11:56,406 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-1.2.0.dev0-py3-none-any.whl#sha256=1c6e81249da6f3e19dd7594733329820632b1b6b0355abe79af180116c3b8aba (from https://www.piwheels.org/simple/biom-format/) 2024-05-12T01:11:56,407 Skipping link: not a file: https://www.piwheels.org/simple/biom-format/ 2024-05-12T01:11:56,407 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2024-05-12T01:11:56,427 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2024-05-12T01:11:56,445 Collecting biom-format==2.1.16 2024-05-12T01:11:56,447 Created temporary directory: /tmp/pip-unpack-u994bqr0 2024-05-12T01:11:56,490 Downloading biom-format-2.1.16.tar.gz (11.7 MB) 2024-05-12T01:12:01,390 Added biom-format==2.1.16 from https://files.pythonhosted.org/packages/62/88/d81eabe80aac30ba1fc5dfc7191e7825fcaf19b6564adafc0763d44873ac/biom-format-2.1.16.tar.gz to build tracker '/tmp/pip-build-tracker-f7cgp99m' 2024-05-12T01:12:01,395 Created temporary directory: /tmp/pip-build-env-y9rvxzmy 2024-05-12T01:12:01,405 Installing build dependencies: started 2024-05-12T01:12:01,406 Running command pip subprocess to install build dependencies 2024-05-12T01:12:02,575 Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2024-05-12T01:12:03,091 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-12T01:12:05,118 Collecting setuptools 2024-05-12T01:12:05,135 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-12T01:12:05,668 Collecting wheel 2024-05-12T01:12:05,788 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-12T01:12:07,125 Collecting numpy 2024-05-12T01:12:07,167 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB) 2024-05-12T01:12:09,362 Collecting cython 2024-05-12T01:12:11,115 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp39-cp39-linux_armv7l.whl (10.7 MB) 2024-05-12T01:12:13,324 Installing collected packages: wheel, setuptools, numpy, cython 2024-05-12T01:12:13,552 Creating /tmp/pip-build-env-y9rvxzmy/overlay/bin 2024-05-12T01:12:13,554 changing mode of /tmp/pip-build-env-y9rvxzmy/overlay/bin/wheel to 755 2024-05-12T01:12:24,446 changing mode of /tmp/pip-build-env-y9rvxzmy/overlay/bin/f2py to 755 2024-05-12T01:12:28,228 changing mode of /tmp/pip-build-env-y9rvxzmy/overlay/bin/cygdb to 755 2024-05-12T01:12:28,231 changing mode of /tmp/pip-build-env-y9rvxzmy/overlay/bin/cython to 755 2024-05-12T01:12:28,233 changing mode of /tmp/pip-build-env-y9rvxzmy/overlay/bin/cythonize to 755 2024-05-12T01:12:28,472 Successfully installed cython-3.0.10 numpy-1.26.4 setuptools-69.5.1 wheel-0.43.0 2024-05-12T01:12:29,152 Installing build dependencies: finished with status 'done' 2024-05-12T01:12:29,163 Getting requirements to build wheel: started 2024-05-12T01:12:29,164 Running command Getting requirements to build wheel 2024-05-12T01:12:31,958 /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-vzpg9e22/biom-format_b35053faef674a99a0e5276d0465d687/biom/_filter.pyx 2024-05-12T01:12:31,958 tree = Parsing.p_module(s, pxd, full_module_name) 2024-05-12T01:12:32,938 /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-vzpg9e22/biom-format_b35053faef674a99a0e5276d0465d687/biom/_subsample.pyx 2024-05-12T01:12:32,938 tree = Parsing.p_module(s, pxd, full_module_name) 2024-05-12T01:12:33,599 /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-vzpg9e22/biom-format_b35053faef674a99a0e5276d0465d687/biom/_transform.pyx 2024-05-12T01:12:33,600 tree = Parsing.p_module(s, pxd, full_module_name) 2024-05-12T01:12:34,246 Compiling biom/_filter.pyx because it changed. 2024-05-12T01:12:34,246 Compiling biom/_transform.pyx because it changed. 2024-05-12T01:12:34,247 Compiling biom/_subsample.pyx because it changed. 2024-05-12T01:12:34,247 [1/3] Cythonizing biom/_filter.pyx 2024-05-12T01:12:34,247 [2/3] Cythonizing biom/_subsample.pyx 2024-05-12T01:12:34,247 [3/3] Cythonizing biom/_transform.pyx 2024-05-12T01:12:34,354 running egg_info 2024-05-12T01:12:34,360 writing biom_format.egg-info/PKG-INFO 2024-05-12T01:12:34,365 writing dependency_links to biom_format.egg-info/dependency_links.txt 2024-05-12T01:12:34,367 writing entry points to biom_format.egg-info/entry_points.txt 2024-05-12T01:12:34,370 writing requirements to biom_format.egg-info/requires.txt 2024-05-12T01:12:34,371 writing top-level names to biom_format.egg-info/top_level.txt 2024-05-12T01:12:34,422 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,422 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,422 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,422 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,422 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,423 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,423 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,423 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,423 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,423 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,423 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,423 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,424 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,424 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,424 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:34,429 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2024-05-12T01:12:34,466 reading manifest template 'MANIFEST.in' 2024-05-12T01:12:34,480 warning: no directories found matching 'support_files' 2024-05-12T01:12:34,489 warning: no directories found matching 'tests/test_data' 2024-05-12T01:12:34,490 no previously-included directories found matching 'docs/_build' 2024-05-12T01:12:34,491 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-05-12T01:12:34,493 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-05-12T01:12:34,494 warning: no previously-included files matching '.git' found anywhere in distribution 2024-05-12T01:12:34,497 warning: no previously-included files matching '*.so' found anywhere in distribution 2024-05-12T01:12:34,498 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2024-05-12T01:12:34,498 adding license file 'COPYING.txt' 2024-05-12T01:12:34,511 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2024-05-12T01:12:34,833 Getting requirements to build wheel: finished with status 'done' 2024-05-12T01:12:34,841 Created temporary directory: /tmp/pip-modern-metadata-yflk5oxb 2024-05-12T01:12:34,844 Preparing metadata (pyproject.toml): started 2024-05-12T01:12:34,845 Running command Preparing metadata (pyproject.toml) 2024-05-12T01:12:36,562 running dist_info 2024-05-12T01:12:36,570 creating /tmp/pip-modern-metadata-yflk5oxb/biom_format.egg-info 2024-05-12T01:12:36,575 writing /tmp/pip-modern-metadata-yflk5oxb/biom_format.egg-info/PKG-INFO 2024-05-12T01:12:36,580 writing dependency_links to /tmp/pip-modern-metadata-yflk5oxb/biom_format.egg-info/dependency_links.txt 2024-05-12T01:12:36,581 writing entry points to /tmp/pip-modern-metadata-yflk5oxb/biom_format.egg-info/entry_points.txt 2024-05-12T01:12:36,583 writing requirements to /tmp/pip-modern-metadata-yflk5oxb/biom_format.egg-info/requires.txt 2024-05-12T01:12:36,585 writing top-level names to /tmp/pip-modern-metadata-yflk5oxb/biom_format.egg-info/top_level.txt 2024-05-12T01:12:36,586 writing manifest file '/tmp/pip-modern-metadata-yflk5oxb/biom_format.egg-info/SOURCES.txt' 2024-05-12T01:12:36,631 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,631 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,632 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,632 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,632 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,632 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,632 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,632 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,632 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,632 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,633 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,633 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,633 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,633 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,633 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:36,638 reading manifest file '/tmp/pip-modern-metadata-yflk5oxb/biom_format.egg-info/SOURCES.txt' 2024-05-12T01:12:36,641 reading manifest template 'MANIFEST.in' 2024-05-12T01:12:36,650 warning: no directories found matching 'support_files' 2024-05-12T01:12:36,655 warning: no directories found matching 'tests/test_data' 2024-05-12T01:12:36,656 no previously-included directories found matching 'docs/_build' 2024-05-12T01:12:36,657 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-05-12T01:12:36,658 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-05-12T01:12:36,659 warning: no previously-included files matching '.git' found anywhere in distribution 2024-05-12T01:12:36,661 warning: no previously-included files matching '*.so' found anywhere in distribution 2024-05-12T01:12:36,662 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2024-05-12T01:12:36,662 adding license file 'COPYING.txt' 2024-05-12T01:12:36,671 writing manifest file '/tmp/pip-modern-metadata-yflk5oxb/biom_format.egg-info/SOURCES.txt' 2024-05-12T01:12:36,673 creating '/tmp/pip-modern-metadata-yflk5oxb/biom_format-2.1.16.dist-info' 2024-05-12T01:12:36,903 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-12T01:12:36,909 Source in /tmp/pip-wheel-vzpg9e22/biom-format_b35053faef674a99a0e5276d0465d687 has version 2.1.16, which satisfies requirement biom-format==2.1.16 from https://files.pythonhosted.org/packages/62/88/d81eabe80aac30ba1fc5dfc7191e7825fcaf19b6564adafc0763d44873ac/biom-format-2.1.16.tar.gz 2024-05-12T01:12:36,910 Removed biom-format==2.1.16 from https://files.pythonhosted.org/packages/62/88/d81eabe80aac30ba1fc5dfc7191e7825fcaf19b6564adafc0763d44873ac/biom-format-2.1.16.tar.gz from build tracker '/tmp/pip-build-tracker-f7cgp99m' 2024-05-12T01:12:36,916 Created temporary directory: /tmp/pip-unpack-ig0euy4s 2024-05-12T01:12:36,917 Created temporary directory: /tmp/pip-unpack-bxay21vv 2024-05-12T01:12:36,932 Building wheels for collected packages: biom-format 2024-05-12T01:12:36,937 Created temporary directory: /tmp/pip-wheel-0jvtop9b 2024-05-12T01:12:36,937 Destination directory: /tmp/pip-wheel-0jvtop9b 2024-05-12T01:12:36,940 Building wheel for biom-format (pyproject.toml): started 2024-05-12T01:12:36,941 Running command Building wheel for biom-format (pyproject.toml) 2024-05-12T01:12:38,657 running bdist_wheel 2024-05-12T01:12:38,713 running build 2024-05-12T01:12:38,713 running build_py 2024-05-12T01:12:38,723 creating build 2024-05-12T01:12:38,723 creating build/lib.linux-armv7l-cpython-39 2024-05-12T01:12:38,724 creating build/lib.linux-armv7l-cpython-39/biom 2024-05-12T01:12:38,725 copying biom/table.py -> build/lib.linux-armv7l-cpython-39/biom 2024-05-12T01:12:38,731 copying biom/parse.py -> build/lib.linux-armv7l-cpython-39/biom 2024-05-12T01:12:38,733 copying biom/util.py -> build/lib.linux-armv7l-cpython-39/biom 2024-05-12T01:12:38,736 copying biom/err.py -> build/lib.linux-armv7l-cpython-39/biom 2024-05-12T01:12:38,738 copying biom/__init__.py -> build/lib.linux-armv7l-cpython-39/biom 2024-05-12T01:12:38,740 copying biom/exception.py -> build/lib.linux-armv7l-cpython-39/biom 2024-05-12T01:12:38,742 creating build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,743 copying biom/cli/table_head.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,745 copying biom/cli/table_converter.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,747 copying biom/cli/table_normalizer.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,749 copying biom/cli/metadata_adder.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,751 copying biom/cli/table_subsetter.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,753 copying biom/cli/util.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,755 copying biom/cli/table_summarizer.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,757 copying biom/cli/metadata_exporter.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,759 copying biom/cli/table_ids.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,760 copying biom/cli/uc_processor.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,762 copying biom/cli/installation_informer.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,764 copying biom/cli/__init__.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,766 copying biom/cli/table_validator.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2024-05-12T01:12:38,769 creating build/lib.linux-armv7l-cpython-39/biom/tests 2024-05-12T01:12:38,769 copying biom/tests/long_lines.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2024-05-12T01:12:38,772 copying biom/tests/test_util.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2024-05-12T01:12:38,774 copying biom/tests/test_parse.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2024-05-12T01:12:38,777 copying biom/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2024-05-12T01:12:38,779 copying biom/tests/test_table.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2024-05-12T01:12:38,785 copying biom/tests/test_err.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2024-05-12T01:12:38,789 creating build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2024-05-12T01:12:38,790 copying biom/tests/test_data/__init__.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2024-05-12T01:12:38,792 creating build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2024-05-12T01:12:38,793 copying biom/tests/test_cli/test_add_metadata.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2024-05-12T01:12:38,795 copying biom/tests/test_cli/test_subset_table.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2024-05-12T01:12:38,797 copying biom/tests/test_cli/test_summarize_table.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2024-05-12T01:12:38,799 copying biom/tests/test_cli/test_table_converter.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2024-05-12T01:12:38,802 copying biom/tests/test_cli/test_show_install_info.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2024-05-12T01:12:38,803 copying biom/tests/test_cli/test_uc_processor.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2024-05-12T01:12:38,805 copying biom/tests/test_cli/__init__.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2024-05-12T01:12:38,807 copying biom/tests/test_cli/test_validate_table.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2024-05-12T01:12:38,809 copying biom/tests/test_cli/test_table_normalizer.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2024-05-12T01:12:38,811 running egg_info 2024-05-12T01:12:38,821 writing biom_format.egg-info/PKG-INFO 2024-05-12T01:12:38,825 writing dependency_links to biom_format.egg-info/dependency_links.txt 2024-05-12T01:12:38,827 writing entry points to biom_format.egg-info/entry_points.txt 2024-05-12T01:12:38,829 writing requirements to biom_format.egg-info/requires.txt 2024-05-12T01:12:38,830 writing top-level names to biom_format.egg-info/top_level.txt 2024-05-12T01:12:38,839 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,840 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,840 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,840 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,840 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,840 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,840 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,840 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,841 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,841 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,841 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,841 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,841 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,842 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,842 dependency /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-05-12T01:12:38,847 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2024-05-12T01:12:38,853 reading manifest template 'MANIFEST.in' 2024-05-12T01:12:38,862 warning: no directories found matching 'support_files' 2024-05-12T01:12:38,867 warning: no directories found matching 'tests/test_data' 2024-05-12T01:12:38,868 no previously-included directories found matching 'docs/_build' 2024-05-12T01:12:38,869 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-05-12T01:12:38,871 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-05-12T01:12:38,872 warning: no previously-included files matching '.git' found anywhere in distribution 2024-05-12T01:12:38,875 warning: no previously-included files matching '*.so' found anywhere in distribution 2024-05-12T01:12:38,876 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2024-05-12T01:12:38,877 adding license file 'COPYING.txt' 2024-05-12T01:12:38,889 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2024-05-12T01:12:38,892 /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'biom.assets' is absent from the `packages` configuration. 2024-05-12T01:12:38,892 !! 2024-05-12T01:12:38,893 ******************************************************************************** 2024-05-12T01:12:38,893 ############################ 2024-05-12T01:12:38,893 # Package would be ignored # 2024-05-12T01:12:38,893 ############################ 2024-05-12T01:12:38,893 Python recognizes 'biom.assets' as an importable package[^1], 2024-05-12T01:12:38,893 but it is absent from setuptools' `packages` configuration. 2024-05-12T01:12:38,894 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-12T01:12:38,894 package, please make sure that 'biom.assets' is explicitly added 2024-05-12T01:12:38,894 to the `packages` configuration field. 2024-05-12T01:12:38,894 Alternatively, you can also rely on setuptools' discovery methods 2024-05-12T01:12:38,895 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-12T01:12:38,895 instead of `find_packages(...)`/`find:`). 2024-05-12T01:12:38,895 You can read more about "package discovery" on setuptools documentation page: 2024-05-12T01:12:38,895 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-12T01:12:38,895 If you don't want 'biom.assets' to be distributed and are 2024-05-12T01:12:38,895 already explicitly excluding 'biom.assets' via 2024-05-12T01:12:38,896 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-12T01:12:38,896 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-12T01:12:38,896 combination with a more fine grained `package-data` configuration. 2024-05-12T01:12:38,896 You can read more about "package data files" on setuptools documentation page: 2024-05-12T01:12:38,896 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-12T01:12:38,897 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-12T01:12:38,897 even if it does not contain any `.py` files. 2024-05-12T01:12:38,897 On the other hand, currently there is no concept of package data 2024-05-12T01:12:38,897 directory, all directories are treated like packages. 2024-05-12T01:12:38,897 ******************************************************************************** 2024-05-12T01:12:38,897 !! 2024-05-12T01:12:38,897 check.warn(importable) 2024-05-12T01:12:38,898 /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. 2024-05-12T01:12:38,898 !! 2024-05-12T01:12:38,898 ******************************************************************************** 2024-05-12T01:12:38,898 ############################ 2024-05-12T01:12:38,898 # Package would be ignored # 2024-05-12T01:12:38,898 ############################ 2024-05-12T01:12:38,898 Python recognizes 'biom.tests.bench_tables' as an importable package[^1], 2024-05-12T01:12:38,898 but it is absent from setuptools' `packages` configuration. 2024-05-12T01:12:38,899 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-12T01:12:38,899 package, please make sure that 'biom.tests.bench_tables' is explicitly added 2024-05-12T01:12:38,899 to the `packages` configuration field. 2024-05-12T01:12:38,899 Alternatively, you can also rely on setuptools' discovery methods 2024-05-12T01:12:38,899 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-12T01:12:38,899 instead of `find_packages(...)`/`find:`). 2024-05-12T01:12:38,900 You can read more about "package discovery" on setuptools documentation page: 2024-05-12T01:12:38,900 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-12T01:12:38,900 If you don't want 'biom.tests.bench_tables' to be distributed and are 2024-05-12T01:12:38,900 already explicitly excluding 'biom.tests.bench_tables' via 2024-05-12T01:12:38,900 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-12T01:12:38,900 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-12T01:12:38,901 combination with a more fine grained `package-data` configuration. 2024-05-12T01:12:38,901 You can read more about "package data files" on setuptools documentation page: 2024-05-12T01:12:38,901 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-12T01:12:38,901 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-12T01:12:38,901 even if it does not contain any `.py` files. 2024-05-12T01:12:38,901 On the other hand, currently there is no concept of package data 2024-05-12T01:12:38,902 directory, all directories are treated like packages. 2024-05-12T01:12:38,902 ******************************************************************************** 2024-05-12T01:12:38,902 !! 2024-05-12T01:12:38,902 check.warn(importable) 2024-05-12T01:12:38,902 /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. 2024-05-12T01:12:38,902 !! 2024-05-12T01:12:38,903 ******************************************************************************** 2024-05-12T01:12:38,903 ############################ 2024-05-12T01:12:38,903 # Package would be ignored # 2024-05-12T01:12:38,903 ############################ 2024-05-12T01:12:38,903 Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], 2024-05-12T01:12:38,903 but it is absent from setuptools' `packages` configuration. 2024-05-12T01:12:38,903 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-12T01:12:38,904 package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added 2024-05-12T01:12:38,904 to the `packages` configuration field. 2024-05-12T01:12:38,904 Alternatively, you can also rely on setuptools' discovery methods 2024-05-12T01:12:38,904 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-12T01:12:38,904 instead of `find_packages(...)`/`find:`). 2024-05-12T01:12:38,904 You can read more about "package discovery" on setuptools documentation page: 2024-05-12T01:12:38,905 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-12T01:12:38,905 If you don't want 'biom.tests.test_cli.test_data' to be distributed and are 2024-05-12T01:12:38,905 already explicitly excluding 'biom.tests.test_cli.test_data' via 2024-05-12T01:12:38,905 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-12T01:12:38,905 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-12T01:12:38,905 combination with a more fine grained `package-data` configuration. 2024-05-12T01:12:38,906 You can read more about "package data files" on setuptools documentation page: 2024-05-12T01:12:38,906 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-12T01:12:38,906 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-12T01:12:38,906 even if it does not contain any `.py` files. 2024-05-12T01:12:38,906 On the other hand, currently there is no concept of package data 2024-05-12T01:12:38,906 directory, all directories are treated like packages. 2024-05-12T01:12:38,906 ******************************************************************************** 2024-05-12T01:12:38,907 !! 2024-05-12T01:12:38,907 check.warn(importable) 2024-05-12T01:12:38,913 copying biom/_filter.pyx -> build/lib.linux-armv7l-cpython-39/biom 2024-05-12T01:12:38,916 copying biom/_subsample.pyx -> build/lib.linux-armv7l-cpython-39/biom 2024-05-12T01:12:38,918 copying biom/_transform.pyx -> build/lib.linux-armv7l-cpython-39/biom 2024-05-12T01:12:38,920 creating build/lib.linux-armv7l-cpython-39/biom/assets 2024-05-12T01:12:38,921 copying biom/assets/exercise_api.py -> build/lib.linux-armv7l-cpython-39/biom/assets 2024-05-12T01:12:38,923 copying biom/assets/exercise_cli.sh -> build/lib.linux-armv7l-cpython-39/biom/assets 2024-05-12T01:12:38,925 creating build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:38,926 copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:38,933 copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:38,950 copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:38,993 copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,013 copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,358 copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,424 copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,429 copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,437 copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,488 copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,497 copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,539 copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,567 copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,570 copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,578 copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,581 copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,589 copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,595 copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,605 copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,609 copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,619 copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,621 copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,629 copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,633 copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,642 copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,646 copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,657 copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,667 copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,680 copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,718 copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,763 copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,766 copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,771 copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,773 copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,777 copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,784 copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,789 copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,791 copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,794 copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,797 copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,801 copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,803 copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,807 copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,809 copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,813 copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,815 copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,819 copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,821 copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,824 copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,827 copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,834 copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,837 copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,845 copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,852 copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,862 copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,864 copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,868 copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,870 copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,874 copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,877 copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,881 copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,883 copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,886 copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,889 copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,891 copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,894 copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,897 copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,899 copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,902 copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,904 copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,907 copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,909 copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,912 copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,915 copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,924 copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,927 copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,934 copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,938 copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,945 copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,947 copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,951 copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,953 copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,956 copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,959 copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,962 copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,964 copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,967 copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,969 copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,972 copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,974 copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,978 copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,979 copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,982 copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,984 copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,987 copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,989 copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2024-05-12T01:12:39,992 copying biom/tests/test_data/bad_table.txt -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2024-05-12T01:12:39,994 copying biom/tests/test_data/bad_table.txt.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2024-05-12T01:12:39,996 copying biom/tests/test_data/edgecase_issue_952.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2024-05-12T01:12:40,000 copying biom/tests/test_data/empty.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2024-05-12T01:12:40,003 copying biom/tests/test_data/no-contents.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2024-05-12T01:12:40,005 copying biom/tests/test_data/test.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2024-05-12T01:12:40,009 copying biom/tests/test_data/test.json -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2024-05-12T01:12:40,011 copying biom/tests/test_data/test.json.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2024-05-12T01:12:40,013 copying biom/tests/test_data/test_grp_metadata.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2024-05-12T01:12:40,016 creating build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2024-05-12T01:12:40,017 copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2024-05-12T01:12:40,019 copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2024-05-12T01:12:40,022 copying biom/tests/test_cli/test_data/test.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2024-05-12T01:12:40,025 copying biom/tests/test_cli/test_data/test.json -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2024-05-12T01:12:40,031 running build_ext 2024-05-12T01:12:40,040 building 'biom._filter' extension 2024-05-12T01:12:40,041 creating build/temp.linux-armv7l-cpython-39 2024-05-12T01:12:40,041 creating build/temp.linux-armv7l-cpython-39/biom 2024-05-12T01:12:40,042 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-cpython-39/biom/_filter.o 2024-05-12T01:12:40,414 In file included from /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-05-12T01:12:40,414 from /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-05-12T01:12:40,415 from /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-05-12T01:12:40,415 from biom/_filter.c:1249: 2024-05-12T01:12:40,415 /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-05-12T01:12:40,415 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-05-12T01:12:40,415 | ^~~~~~~ 2024-05-12T01:12:49,371 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/biom/_filter.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/biom/_filter.cpython-39-arm-linux-gnueabihf.so 2024-05-12T01:12:49,501 building 'biom._transform' extension 2024-05-12T01:12:49,502 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armv7l-cpython-39/biom/_transform.o 2024-05-12T01:12:49,812 In file included from /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-05-12T01:12:49,812 from /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-05-12T01:12:49,813 from /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-05-12T01:12:49,813 from biom/_transform.c:1249: 2024-05-12T01:12:49,813 /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-05-12T01:12:49,813 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-05-12T01:12:49,813 | ^~~~~~~ 2024-05-12T01:12:54,380 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/biom/_transform.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/biom/_transform.cpython-39-arm-linux-gnueabihf.so 2024-05-12T01:12:54,505 building 'biom._subsample' extension 2024-05-12T01:12:54,505 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armv7l-cpython-39/biom/_subsample.o 2024-05-12T01:12:54,845 In file included from /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2024-05-12T01:12:54,845 from /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-05-12T01:12:54,845 from /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-05-12T01:12:54,845 from biom/_subsample.c:1249: 2024-05-12T01:12:54,845 /tmp/pip-build-env-y9rvxzmy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-05-12T01:12:54,846 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-05-12T01:12:54,846 | ^~~~~~~ 2024-05-12T01:13:01,185 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/biom/_subsample.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/biom/_subsample.cpython-39-arm-linux-gnueabihf.so 2024-05-12T01:13:01,326 installing to build/bdist.linux-armv7l/wheel 2024-05-12T01:13:01,327 running install 2024-05-12T01:13:01,351 running install_lib 2024-05-12T01:13:01,360 creating build/bdist.linux-armv7l 2024-05-12T01:13:01,360 creating build/bdist.linux-armv7l/wheel 2024-05-12T01:13:01,362 creating build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:01,363 copying build/lib.linux-armv7l-cpython-39/biom/_subsample.pyx -> build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:01,366 copying build/lib.linux-armv7l-cpython-39/biom/table.py -> build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:01,373 copying build/lib.linux-armv7l-cpython-39/biom/_transform.pyx -> build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:01,375 copying build/lib.linux-armv7l-cpython-39/biom/parse.py -> build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:01,378 copying build/lib.linux-armv7l-cpython-39/biom/util.py -> build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:01,381 creating build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,382 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_head.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,384 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_converter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,386 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,388 copying build/lib.linux-armv7l-cpython-39/biom/cli/metadata_adder.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,391 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_subsetter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,393 copying build/lib.linux-armv7l-cpython-39/biom/cli/util.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,395 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_summarizer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,397 copying build/lib.linux-armv7l-cpython-39/biom/cli/metadata_exporter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,399 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_ids.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,401 copying build/lib.linux-armv7l-cpython-39/biom/cli/uc_processor.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,403 copying build/lib.linux-armv7l-cpython-39/biom/cli/installation_informer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,405 copying build/lib.linux-armv7l-cpython-39/biom/cli/__init__.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,407 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_validator.py -> build/bdist.linux-armv7l/wheel/biom/cli 2024-05-12T01:13:01,410 copying build/lib.linux-armv7l-cpython-39/biom/err.py -> build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:01,412 copying build/lib.linux-armv7l-cpython-39/biom/__init__.py -> build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:01,414 copying build/lib.linux-armv7l-cpython-39/biom/exception.py -> build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:01,416 copying build/lib.linux-armv7l-cpython-39/biom/_subsample.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:01,431 creating build/bdist.linux-armv7l/wheel/biom/assets 2024-05-12T01:13:01,432 copying build/lib.linux-armv7l-cpython-39/biom/assets/exercise_api.py -> build/bdist.linux-armv7l/wheel/biom/assets 2024-05-12T01:13:01,434 copying build/lib.linux-armv7l-cpython-39/biom/assets/exercise_cli.sh -> build/bdist.linux-armv7l/wheel/biom/assets 2024-05-12T01:13:01,435 copying build/lib.linux-armv7l-cpython-39/biom/_transform.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:01,447 copying build/lib.linux-armv7l-cpython-39/biom/_filter.pyx -> build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:01,450 creating build/bdist.linux-armv7l/wheel/biom/tests 2024-05-12T01:13:01,450 copying build/lib.linux-armv7l-cpython-39/biom/tests/long_lines.py -> build/bdist.linux-armv7l/wheel/biom/tests 2024-05-12T01:13:01,453 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_util.py -> build/bdist.linux-armv7l/wheel/biom/tests 2024-05-12T01:13:01,456 creating build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-12T01:13:01,457 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/test_grp_metadata.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-12T01:13:01,461 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/test.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-12T01:13:01,464 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/test.json -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-12T01:13:01,466 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/edgecase_issue_952.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-12T01:13:01,470 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/bad_table.txt -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-12T01:13:01,472 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/test.json.gz -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-12T01:13:01,473 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-12T01:13:01,475 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/bad_table.txt.gz -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-12T01:13:01,477 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/empty.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-12T01:13:01,480 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/no-contents.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2024-05-12T01:13:01,481 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_parse.py -> build/bdist.linux-armv7l/wheel/biom/tests 2024-05-12T01:13:01,485 copying build/lib.linux-armv7l-cpython-39/biom/tests/__init__.py -> build/bdist.linux-armv7l/wheel/biom/tests 2024-05-12T01:13:01,487 creating build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-12T01:13:01,488 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-12T01:13:01,491 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_subset_table.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-12T01:13:01,493 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-12T01:13:01,496 creating build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2024-05-12T01:13:01,497 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data/test.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2024-05-12T01:13:01,500 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data/test.json -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2024-05-12T01:13:01,502 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2024-05-12T01:13:01,504 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2024-05-12T01:13:01,506 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_table_converter.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-12T01:13:01,509 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-12T01:13:01,511 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_uc_processor.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-12T01:13:01,513 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/__init__.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-12T01:13:01,515 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_validate_table.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-12T01:13:01,518 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2024-05-12T01:13:01,522 creating build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,523 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,535 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,537 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,551 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,553 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,555 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,558 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,562 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,564 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,574 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,577 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,580 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,583 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,595 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,599 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,605 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,609 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,611 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,613 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,650 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,652 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,656 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,659 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,662 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,669 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,671 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,674 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,727 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,731 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,734 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,736 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,739 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,742 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,746 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,757 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,766 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,769 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,771 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,779 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,782 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,791 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,794 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,798 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,812 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,814 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,828 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,831 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,839 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,843 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,853 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,857 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,861 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,863 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:01,873 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,238 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,292 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,301 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,308 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,311 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,314 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,329 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,332 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,334 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,338 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,340 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,341 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,351 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,353 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,399 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,401 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,404 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,412 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,419 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,422 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,426 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,429 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,431 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,438 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,489 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,587 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,594 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,598 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,602 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,606 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,607 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,610 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,613 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,659 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,661 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,664 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,668 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,671 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,673 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,677 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,697 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,703 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2024-05-12T01:13:02,705 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_table.py -> build/bdist.linux-armv7l/wheel/biom/tests 2024-05-12T01:13:02,710 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_err.py -> build/bdist.linux-armv7l/wheel/biom/tests 2024-05-12T01:13:02,712 copying build/lib.linux-armv7l-cpython-39/biom/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2024-05-12T01:13:02,721 running install_egg_info 2024-05-12T01:13:02,736 Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/biom_format-2.1.16-py3.9.egg-info 2024-05-12T01:13:02,749 running install_scripts 2024-05-12T01:13:02,801 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.16.dist-info/WHEEL 2024-05-12T01:13:02,804 creating '/tmp/pip-wheel-0jvtop9b/.tmp-r5x1o_wq/biom_format-2.1.16-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-12T01:13:02,806 adding 'biom/__init__.py' 2024-05-12T01:13:02,913 adding 'biom/_filter.cpython-39-arm-linux-gnueabihf.so' 2024-05-12T01:13:02,917 adding 'biom/_filter.pyx' 2024-05-12T01:13:02,998 adding 'biom/_subsample.cpython-39-arm-linux-gnueabihf.so' 2024-05-12T01:13:03,002 adding 'biom/_subsample.pyx' 2024-05-12T01:13:03,064 adding 'biom/_transform.cpython-39-arm-linux-gnueabihf.so' 2024-05-12T01:13:03,067 adding 'biom/_transform.pyx' 2024-05-12T01:13:03,069 adding 'biom/err.py' 2024-05-12T01:13:03,070 adding 'biom/exception.py' 2024-05-12T01:13:03,073 adding 'biom/parse.py' 2024-05-12T01:13:03,096 adding 'biom/table.py' 2024-05-12T01:13:03,099 adding 'biom/util.py' 2024-05-12T01:13:03,101 adding 'biom/assets/exercise_api.py' 2024-05-12T01:13:03,103 adding 'biom/assets/exercise_cli.sh' 2024-05-12T01:13:03,105 adding 'biom/cli/__init__.py' 2024-05-12T01:13:03,106 adding 'biom/cli/installation_informer.py' 2024-05-12T01:13:03,108 adding 'biom/cli/metadata_adder.py' 2024-05-12T01:13:03,109 adding 'biom/cli/metadata_exporter.py' 2024-05-12T01:13:03,111 adding 'biom/cli/table_converter.py' 2024-05-12T01:13:03,112 adding 'biom/cli/table_head.py' 2024-05-12T01:13:03,113 adding 'biom/cli/table_ids.py' 2024-05-12T01:13:03,115 adding 'biom/cli/table_normalizer.py' 2024-05-12T01:13:03,116 adding 'biom/cli/table_subsetter.py' 2024-05-12T01:13:03,118 adding 'biom/cli/table_summarizer.py' 2024-05-12T01:13:03,120 adding 'biom/cli/table_validator.py' 2024-05-12T01:13:03,122 adding 'biom/cli/uc_processor.py' 2024-05-12T01:13:03,123 adding 'biom/cli/util.py' 2024-05-12T01:13:03,124 adding 'biom/tests/__init__.py' 2024-05-12T01:13:03,126 adding 'biom/tests/long_lines.py' 2024-05-12T01:13:03,128 adding 'biom/tests/test_err.py' 2024-05-12T01:13:03,132 adding 'biom/tests/test_parse.py' 2024-05-12T01:13:03,147 adding 'biom/tests/test_table.py' 2024-05-12T01:13:03,151 adding 'biom/tests/test_util.py' 2024-05-12T01:13:03,163 adding 'biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz' 2024-05-12T01:13:03,277 adding 'biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:03,361 adding 'biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz' 2024-05-12T01:13:03,497 adding 'biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:04,055 adding 'biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz' 2024-05-12T01:13:04,542 adding 'biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:04,576 adding 'biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz' 2024-05-12T01:13:04,634 adding 'biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:04,665 adding 'biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz' 2024-05-12T01:13:04,742 adding 'biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:04,995 adding 'biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz' 2024-05-12T01:13:05,262 adding 'biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:05,276 adding 'biom/tests/bench_tables/10000x100x0.001_bench.biom.gz' 2024-05-12T01:13:05,325 adding 'biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:05,332 adding 'biom/tests/bench_tables/10000x100x0.010_bench.biom.gz' 2024-05-12T01:13:05,384 adding 'biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:05,407 adding 'biom/tests/bench_tables/10000x100x0.100_bench.biom.gz' 2024-05-12T01:13:05,472 adding 'biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:05,476 adding 'biom/tests/bench_tables/10000x10x0.001_bench.biom.gz' 2024-05-12T01:13:05,525 adding 'biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:05,529 adding 'biom/tests/bench_tables/10000x10x0.010_bench.biom.gz' 2024-05-12T01:13:05,577 adding 'biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:05,583 adding 'biom/tests/bench_tables/10000x10x0.100_bench.biom.gz' 2024-05-12T01:13:05,633 adding 'biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:05,640 adding 'biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz' 2024-05-12T01:13:05,696 adding 'biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:05,736 adding 'biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz' 2024-05-12T01:13:05,815 adding 'biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:06,119 adding 'biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz' 2024-05-12T01:13:06,461 adding 'biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:06,478 adding 'biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz' 2024-05-12T01:13:06,488 adding 'biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:06,491 adding 'biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz' 2024-05-12T01:13:06,502 adding 'biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:06,511 adding 'biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz' 2024-05-12T01:13:06,525 adding 'biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:06,527 adding 'biom/tests/bench_tables/1000x100x0.001_bench.biom.gz' 2024-05-12T01:13:06,534 adding 'biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:06,536 adding 'biom/tests/bench_tables/1000x100x0.010_bench.biom.gz' 2024-05-12T01:13:06,542 adding 'biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:06,547 adding 'biom/tests/bench_tables/1000x100x0.100_bench.biom.gz' 2024-05-12T01:13:06,554 adding 'biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:06,556 adding 'biom/tests/bench_tables/1000x10x0.001_bench.biom.gz' 2024-05-12T01:13:06,562 adding 'biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:06,564 adding 'biom/tests/bench_tables/1000x10x0.010_bench.biom.gz' 2024-05-12T01:13:06,570 adding 'biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:06,572 adding 'biom/tests/bench_tables/1000x10x0.100_bench.biom.gz' 2024-05-12T01:13:06,579 adding 'biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:06,582 adding 'biom/tests/bench_tables/100x10000x0.001_bench.biom.gz' 2024-05-12T01:13:06,631 adding 'biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:06,638 adding 'biom/tests/bench_tables/100x10000x0.010_bench.biom.gz' 2024-05-12T01:13:06,689 adding 'biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:06,722 adding 'biom/tests/bench_tables/100x10000x0.100_bench.biom.gz' 2024-05-12T01:13:06,799 adding 'biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:06,804 adding 'biom/tests/bench_tables/100x1000x0.001_bench.biom.gz' 2024-05-12T01:13:06,810 adding 'biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:06,813 adding 'biom/tests/bench_tables/100x1000x0.010_bench.biom.gz' 2024-05-12T01:13:06,819 adding 'biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:06,823 adding 'biom/tests/bench_tables/100x1000x0.100_bench.biom.gz' 2024-05-12T01:13:06,830 adding 'biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:06,833 adding 'biom/tests/bench_tables/100x100x0.001_bench.biom.gz' 2024-05-12T01:13:06,835 adding 'biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:06,837 adding 'biom/tests/bench_tables/100x100x0.010_bench.biom.gz' 2024-05-12T01:13:06,840 adding 'biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:06,842 adding 'biom/tests/bench_tables/100x100x0.100_bench.biom.gz' 2024-05-12T01:13:06,844 adding 'biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:06,846 adding 'biom/tests/bench_tables/100x10x0.001_bench.biom.gz' 2024-05-12T01:13:06,849 adding 'biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:06,850 adding 'biom/tests/bench_tables/100x10x0.010_bench.biom.gz' 2024-05-12T01:13:06,853 adding 'biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:06,855 adding 'biom/tests/bench_tables/100x10x0.100_bench.biom.gz' 2024-05-12T01:13:06,857 adding 'biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:06,859 adding 'biom/tests/bench_tables/10x10000x0.001_bench.biom.gz' 2024-05-12T01:13:06,908 adding 'biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:06,912 adding 'biom/tests/bench_tables/10x10000x0.010_bench.biom.gz' 2024-05-12T01:13:06,960 adding 'biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:06,966 adding 'biom/tests/bench_tables/10x10000x0.100_bench.biom.gz' 2024-05-12T01:13:07,017 adding 'biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:07,021 adding 'biom/tests/bench_tables/10x1000x0.001_bench.biom.gz' 2024-05-12T01:13:07,026 adding 'biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:07,028 adding 'biom/tests/bench_tables/10x1000x0.010_bench.biom.gz' 2024-05-12T01:13:07,034 adding 'biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:07,036 adding 'biom/tests/bench_tables/10x1000x0.100_bench.biom.gz' 2024-05-12T01:13:07,041 adding 'biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:07,043 adding 'biom/tests/bench_tables/10x100x0.001_bench.biom.gz' 2024-05-12T01:13:07,046 adding 'biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:07,047 adding 'biom/tests/bench_tables/10x100x0.010_bench.biom.gz' 2024-05-12T01:13:07,050 adding 'biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:07,051 adding 'biom/tests/bench_tables/10x100x0.100_bench.biom.gz' 2024-05-12T01:13:07,054 adding 'biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:07,055 adding 'biom/tests/bench_tables/10x10x0.001_bench.biom.gz' 2024-05-12T01:13:07,058 adding 'biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz' 2024-05-12T01:13:07,059 adding 'biom/tests/bench_tables/10x10x0.010_bench.biom.gz' 2024-05-12T01:13:07,062 adding 'biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz' 2024-05-12T01:13:07,063 adding 'biom/tests/bench_tables/10x10x0.100_bench.biom.gz' 2024-05-12T01:13:07,065 adding 'biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz' 2024-05-12T01:13:07,068 adding 'biom/tests/test_cli/__init__.py' 2024-05-12T01:13:07,069 adding 'biom/tests/test_cli/test_add_metadata.py' 2024-05-12T01:13:07,070 adding 'biom/tests/test_cli/test_show_install_info.py' 2024-05-12T01:13:07,072 adding 'biom/tests/test_cli/test_subset_table.py' 2024-05-12T01:13:07,073 adding 'biom/tests/test_cli/test_summarize_table.py' 2024-05-12T01:13:07,075 adding 'biom/tests/test_cli/test_table_converter.py' 2024-05-12T01:13:07,077 adding 'biom/tests/test_cli/test_table_normalizer.py' 2024-05-12T01:13:07,078 adding 'biom/tests/test_cli/test_uc_processor.py' 2024-05-12T01:13:07,080 adding 'biom/tests/test_cli/test_validate_table.py' 2024-05-12T01:13:07,082 adding 'biom/tests/test_cli/test_data/json_obs_collapsed.biom' 2024-05-12T01:13:07,083 adding 'biom/tests/test_cli/test_data/json_sample_collapsed.biom' 2024-05-12T01:13:07,086 adding 'biom/tests/test_cli/test_data/test.biom' 2024-05-12T01:13:07,088 adding 'biom/tests/test_cli/test_data/test.json' 2024-05-12T01:13:07,090 adding 'biom/tests/test_data/__init__.py' 2024-05-12T01:13:07,091 adding 'biom/tests/test_data/bad_table.txt' 2024-05-12T01:13:07,092 adding 'biom/tests/test_data/bad_table.txt.gz' 2024-05-12T01:13:07,096 adding 'biom/tests/test_data/edgecase_issue_952.biom' 2024-05-12T01:13:07,099 adding 'biom/tests/test_data/empty.biom' 2024-05-12T01:13:07,100 adding 'biom/tests/test_data/no-contents.biom' 2024-05-12T01:13:07,102 adding 'biom/tests/test_data/test.biom' 2024-05-12T01:13:07,104 adding 'biom/tests/test_data/test.json' 2024-05-12T01:13:07,105 adding 'biom/tests/test_data/test.json.gz' 2024-05-12T01:13:07,108 adding 'biom/tests/test_data/test_grp_metadata.biom' 2024-05-12T01:13:07,110 adding 'biom_format-2.1.16.dist-info/COPYING.txt' 2024-05-12T01:13:07,111 adding 'biom_format-2.1.16.dist-info/METADATA' 2024-05-12T01:13:07,113 adding 'biom_format-2.1.16.dist-info/WHEEL' 2024-05-12T01:13:07,114 adding 'biom_format-2.1.16.dist-info/entry_points.txt' 2024-05-12T01:13:07,115 adding 'biom_format-2.1.16.dist-info/top_level.txt' 2024-05-12T01:13:07,117 adding 'biom_format-2.1.16.dist-info/RECORD' 2024-05-12T01:13:07,249 removing build/bdist.linux-armv7l/wheel 2024-05-12T01:13:07,471 Building wheel for biom-format (pyproject.toml): finished with status 'done' 2024-05-12T01:13:07,785 Created wheel for biom-format: filename=biom_format-2.1.16-cp39-cp39-linux_armv7l.whl size=12144757 sha256=dbbdce2b525d5670b41102769e2552cb87dccc310f06ecca2501e4e379c7e507 2024-05-12T01:13:07,786 Stored in directory: /tmp/pip-ephem-wheel-cache-axkkxnlo/wheels/f3/d2/c9/0f6e6eb92d2927fdd14885fdf7632342fc2e5055913672a2f2 2024-05-12T01:13:07,807 Successfully built biom-format 2024-05-12T01:13:08,107 Removed build tracker: '/tmp/pip-build-tracker-f7cgp99m'