2024-05-13T13:56:48,500 Created temporary directory: /tmp/pip-build-tracker-hfwxxwf4 2024-05-13T13:56:48,501 Initialized build tracking at /tmp/pip-build-tracker-hfwxxwf4 2024-05-13T13:56:48,501 Created build tracker: /tmp/pip-build-tracker-hfwxxwf4 2024-05-13T13:56:48,502 Entered build tracker: /tmp/pip-build-tracker-hfwxxwf4 2024-05-13T13:56:48,503 Created temporary directory: /tmp/pip-wheel-phdtzv_9 2024-05-13T13:56:48,506 Created temporary directory: /tmp/pip-ephem-wheel-cache-n4gfjgyj 2024-05-13T13:56:48,529 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-13T13:56:48,532 2 location(s) to search for versions of biomero: 2024-05-13T13:56:48,532 * https://pypi.org/simple/biomero/ 2024-05-13T13:56:48,532 * https://www.piwheels.org/simple/biomero/ 2024-05-13T13:56:48,533 Fetching project page and analyzing links: https://pypi.org/simple/biomero/ 2024-05-13T13:56:48,533 Getting page https://pypi.org/simple/biomero/ 2024-05-13T13:56:48,535 Found index url https://pypi.org/simple/ 2024-05-13T13:56:48,752 Fetched page https://pypi.org/simple/biomero/ as application/vnd.pypi.simple.v1+json 2024-05-13T13:56:48,757 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/62/48/c77a7d502ed23e824988527ffe744d77ec3692bf373f5dffb6406149f55e/biomero-1.2.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,758 Found link https://files.pythonhosted.org/packages/37/4b/4934e30b8ac7f859e20ce2f33ebb9d9de0c2611fd419587e840b457da994/biomero-1.2.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.2.0 2024-05-13T13:56:48,759 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/ba/59/df01007bae6d10f7a894eb8f067b19a6fc1c85cef3621532c552c8a5d83c/biomero-1.3.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,760 Found link https://files.pythonhosted.org/packages/93/66/6f3ba130c6ab15b10a0fc92683db7f8a6d0a60df0c00311f3011d8801db2/biomero-1.3.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.3.0 2024-05-13T13:56:48,760 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/97/35/d6b2ca0b76deaab237094daa9fb4b6c86df67ef59f07510c101082235d8d/biomero-1.4.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,761 Found link https://files.pythonhosted.org/packages/72/2d/612e4f8aedcfd6a0aca21b7896a9ca74e18fdbc382538f411fbe4e403fe4/biomero-1.4.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.4.0 2024-05-13T13:56:48,762 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/f2/2a/58f8f3897d6bfffb13375cb3f67dc4776773852b6cb89c00b45317a93854/biomero-1.5.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,763 Found link https://files.pythonhosted.org/packages/22/5d/beb526e718ea20582a7a10ef277d10f2907723f2dd0bf57465a8f406f27e/biomero-1.5.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.5.0 2024-05-13T13:56:48,764 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/03/8f/4f9506b39fa51bf565e2354dc887ec53ede58150a86a18b92f6bfd8c72a8/biomero-1.5.1-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,765 Found link https://files.pythonhosted.org/packages/98/96/a628cef6b3ed1f89ab3bca30285b46e477bb01bd7fdf6a63e68a0f85c769/biomero-1.5.1.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.5.1 2024-05-13T13:56:48,766 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/ab/be/922b8b35d2c4a9c317c1095c71c1bcc74443be8f04b2a6ac85cbc2892a78/biomero-1.6.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,767 Found link https://files.pythonhosted.org/packages/7c/dc/65d7e481ab81cb06ce680bbe77a95f336261381813135dbc6aa0f0cdb1e3/biomero-1.6.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.6.0 2024-05-13T13:56:48,768 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/93/eb/9d2f80d33477bd9d6299ad0b29898a77c18e449e9bfa6c3656562a3f69b9/biomero-1.7.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,769 Found link https://files.pythonhosted.org/packages/e1/9e/104955b6bb3f34d32fde7b9d1f4be5d5f46a45b25afbee449ac44c905a72/biomero-1.7.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.7.0 2024-05-13T13:56:48,770 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/39/f4/ca212a8abbb68d2c32d48cab43cf6fe1622a5317a4e4300154dafe9b9862/biomero-1.7.1-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,771 Found link https://files.pythonhosted.org/packages/b5/28/c5ae875aa13bd7c8c9aec910812c2fd816fffd196d65f63b8a142181fd33/biomero-1.7.1.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.7.1 2024-05-13T13:56:48,771 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/21/d9/c167814a1abc31271e77ad77422f04554cd41b18f62572e12c4f57e0d446/biomero-1.8.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,772 Found link https://files.pythonhosted.org/packages/c4/f3/5e41f475114acc86b9c5fc20fe702136efe2cfd9a93d877db1b6dd619297/biomero-1.8.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.8.0 2024-05-13T13:56:48,773 Skipping link: No binaries permitted for biomero: https://files.pythonhosted.org/packages/2b/97/0854245dad0152c2df83582e7802735b6c46e4ee97aaefa0252ee23af76c/biomero-1.9.0-py3-none-any.whl (from https://pypi.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,773 Found link https://files.pythonhosted.org/packages/22/4f/1ad8dbbd2c2c569ce42ef22e424c10267f8af17ef0179fecc18dfaceb367/biomero-1.9.0.tar.gz (from https://pypi.org/simple/biomero/) (requires-python:>=3.7), version: 1.9.0 2024-05-13T13:56:48,774 Fetching project page and analyzing links: https://www.piwheels.org/simple/biomero/ 2024-05-13T13:56:48,775 Getting page https://www.piwheels.org/simple/biomero/ 2024-05-13T13:56:48,776 Found index url https://www.piwheels.org/simple/ 2024-05-13T13:56:48,949 Fetched page https://www.piwheels.org/simple/biomero/ as text/html 2024-05-13T13:56:48,953 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.8.0-py3-none-any.whl#sha256=823968c9fd9c97aa196bb2d2b94d85245d2163842ba800ea938a1fdeb7be8b74 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,953 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.7.1-py3-none-any.whl#sha256=d2aec9750cfab56583a01cbd08b734569956b5d4a5a0c524e6b57bc8d76338b4 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,954 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.7.0-py3-none-any.whl#sha256=df715c10bf0a3fe33bd73a44c98bf4b4b75bf0c70d3deb65f4dda3d3813b85e1 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,954 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.6.0-py3-none-any.whl#sha256=f881953b98a86ee2c1508c007dec8ba9b09f98951d65e81405903f1b4efc8515 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,955 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.5.1-py3-none-any.whl#sha256=419f808c9c52525df6108fbd48d53e82cc965e9857500c4544041a791dd4d65e (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,955 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.5.0-py3-none-any.whl#sha256=da32037e690913b648bc08b4cf95219e51618920116abdb024914dc4b29393fd (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,956 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.4.0-py3-none-any.whl#sha256=06a09b9974b9782c3d527bf0ab8d67349261b9af71c6aa3ebf12f342eddd9286 (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,957 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.3.0-py3-none-any.whl#sha256=e87fb4e5b3565cfa3b27830d8d1d1bff5c1054bfb032d2e6055e966ef84df39d (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,957 Skipping link: No binaries permitted for biomero: https://www.piwheels.org/simple/biomero/biomero-1.2.0-py3-none-any.whl#sha256=0a3d446aaed8e43c191ec7b78fd1731e91935fd1e432bde72a96689be19f8dbf (from https://www.piwheels.org/simple/biomero/) (requires-python:>=3.7) 2024-05-13T13:56:48,958 Skipping link: not a file: https://www.piwheels.org/simple/biomero/ 2024-05-13T13:56:48,958 Skipping link: not a file: https://pypi.org/simple/biomero/ 2024-05-13T13:56:48,978 Given no hashes to check 1 links for project 'biomero': discarding no candidates 2024-05-13T13:56:48,995 Collecting biomero==1.9.0 2024-05-13T13:56:48,998 Created temporary directory: /tmp/pip-unpack-bu3bkhmc 2024-05-13T13:56:49,480 Downloading biomero-1.9.0.tar.gz (1.1 MB) 2024-05-13T13:56:49,831 Added biomero==1.9.0 from https://files.pythonhosted.org/packages/22/4f/1ad8dbbd2c2c569ce42ef22e424c10267f8af17ef0179fecc18dfaceb367/biomero-1.9.0.tar.gz to build tracker '/tmp/pip-build-tracker-hfwxxwf4' 2024-05-13T13:56:49,837 Created temporary directory: /tmp/pip-build-env-ojhz_p0h 2024-05-13T13:56:49,842 Installing build dependencies: started 2024-05-13T13:56:49,843 Running command pip subprocess to install build dependencies 2024-05-13T13:56:50,967 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-13T13:56:51,473 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-13T13:56:53,015 Collecting setuptools>=45 2024-05-13T13:56:53,029 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.5.1-py3-none-any.whl (894 kB) 2024-05-13T13:56:53,342 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-05-13T13:56:53,356 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB) 2024-05-13T13:56:53,696 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-05-13T13:56:53,709 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-05-13T13:56:56,262 Installing collected packages: setuptools, packaging, setuptools_scm 2024-05-13T13:56:59,043 Successfully installed packaging-24.0 setuptools-69.5.1 setuptools_scm-8.1.0 2024-05-13T13:56:59,553 Installing build dependencies: finished with status 'done' 2024-05-13T13:56:59,556 Getting requirements to build wheel: started 2024-05-13T13:56:59,558 Running command Getting requirements to build wheel 2024-05-13T13:57:00,399 running egg_info 2024-05-13T13:57:00,404 writing biomero.egg-info/PKG-INFO 2024-05-13T13:57:00,409 writing dependency_links to biomero.egg-info/dependency_links.txt 2024-05-13T13:57:00,412 writing requirements to biomero.egg-info/requires.txt 2024-05-13T13:57:00,413 writing top-level names to biomero.egg-info/top_level.txt 2024-05-13T13:57:00,455 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-13T13:57:00,458 reading manifest file 'biomero.egg-info/SOURCES.txt' 2024-05-13T13:57:00,461 reading manifest template 'MANIFEST.in' 2024-05-13T13:57:00,470 adding license file 'LICENSE' 2024-05-13T13:57:00,473 writing manifest file 'biomero.egg-info/SOURCES.txt' 2024-05-13T13:57:00,594 Getting requirements to build wheel: finished with status 'done' 2024-05-13T13:57:00,604 Installing backend dependencies: started 2024-05-13T13:57:00,605 Running command pip subprocess to install backend dependencies 2024-05-13T13:57:01,734 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-05-13T13:57:02,244 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-13T13:57:02,813 Collecting wheel 2024-05-13T13:57:02,828 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-05-13T13:57:05,093 Installing collected packages: wheel 2024-05-13T13:57:05,315 Creating /tmp/pip-build-env-ojhz_p0h/normal/local/bin 2024-05-13T13:57:05,317 changing mode of /tmp/pip-build-env-ojhz_p0h/normal/local/bin/wheel to 755 2024-05-13T13:57:05,328 Successfully installed wheel-0.43.0 2024-05-13T13:57:05,787 Installing backend dependencies: finished with status 'done' 2024-05-13T13:57:05,789 Created temporary directory: /tmp/pip-modern-metadata-g2auu8lt 2024-05-13T13:57:05,791 Preparing metadata (pyproject.toml): started 2024-05-13T13:57:05,792 Running command Preparing metadata (pyproject.toml) 2024-05-13T13:57:06,702 running dist_info 2024-05-13T13:57:06,708 creating /tmp/pip-modern-metadata-g2auu8lt/biomero.egg-info 2024-05-13T13:57:06,713 writing /tmp/pip-modern-metadata-g2auu8lt/biomero.egg-info/PKG-INFO 2024-05-13T13:57:06,719 writing dependency_links to /tmp/pip-modern-metadata-g2auu8lt/biomero.egg-info/dependency_links.txt 2024-05-13T13:57:06,721 writing requirements to /tmp/pip-modern-metadata-g2auu8lt/biomero.egg-info/requires.txt 2024-05-13T13:57:06,722 writing top-level names to /tmp/pip-modern-metadata-g2auu8lt/biomero.egg-info/top_level.txt 2024-05-13T13:57:06,723 writing manifest file '/tmp/pip-modern-metadata-g2auu8lt/biomero.egg-info/SOURCES.txt' 2024-05-13T13:57:06,765 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-13T13:57:06,768 reading manifest file '/tmp/pip-modern-metadata-g2auu8lt/biomero.egg-info/SOURCES.txt' 2024-05-13T13:57:06,771 reading manifest template 'MANIFEST.in' 2024-05-13T13:57:06,779 adding license file 'LICENSE' 2024-05-13T13:57:06,782 writing manifest file '/tmp/pip-modern-metadata-g2auu8lt/biomero.egg-info/SOURCES.txt' 2024-05-13T13:57:06,783 creating '/tmp/pip-modern-metadata-g2auu8lt/biomero-1.9.0.dist-info' 2024-05-13T13:57:06,951 Preparing metadata (pyproject.toml): finished with status 'done' 2024-05-13T13:57:06,959 Source in /tmp/pip-wheel-phdtzv_9/biomero_dce2b023de61412d9eccf7cee40ddc3f has version 1.9.0, which satisfies requirement biomero==1.9.0 from https://files.pythonhosted.org/packages/22/4f/1ad8dbbd2c2c569ce42ef22e424c10267f8af17ef0179fecc18dfaceb367/biomero-1.9.0.tar.gz 2024-05-13T13:57:06,960 Removed biomero==1.9.0 from https://files.pythonhosted.org/packages/22/4f/1ad8dbbd2c2c569ce42ef22e424c10267f8af17ef0179fecc18dfaceb367/biomero-1.9.0.tar.gz from build tracker '/tmp/pip-build-tracker-hfwxxwf4' 2024-05-13T13:57:06,972 Created temporary directory: /tmp/pip-unpack-xw4co4e0 2024-05-13T13:57:06,973 Created temporary directory: /tmp/pip-unpack-riybzul3 2024-05-13T13:57:06,994 Building wheels for collected packages: biomero 2024-05-13T13:57:06,998 Created temporary directory: /tmp/pip-wheel-uh2ioylk 2024-05-13T13:57:06,999 Destination directory: /tmp/pip-wheel-uh2ioylk 2024-05-13T13:57:07,001 Building wheel for biomero (pyproject.toml): started 2024-05-13T13:57:07,002 Running command Building wheel for biomero (pyproject.toml) 2024-05-13T13:57:07,831 running bdist_wheel 2024-05-13T13:57:07,853 running build 2024-05-13T13:57:07,853 running build_py 2024-05-13T13:57:07,859 creating build 2024-05-13T13:57:07,860 creating build/lib 2024-05-13T13:57:07,861 creating build/lib/biomero 2024-05-13T13:57:07,862 copying biomero/constants.py -> build/lib/biomero 2024-05-13T13:57:07,864 copying biomero/slurm_client.py -> build/lib/biomero 2024-05-13T13:57:07,868 copying biomero/__init__.py -> build/lib/biomero 2024-05-13T13:57:07,870 creating build/lib/resources 2024-05-13T13:57:07,871 copying resources/convert_zarr_to_tiff.py -> build/lib/resources 2024-05-13T13:57:07,874 copying resources/__init__.py -> build/lib/resources 2024-05-13T13:57:07,877 creating build/lib/docs 2024-05-13T13:57:07,878 copying docs/conf.py -> build/lib/docs 2024-05-13T13:57:07,881 creating build/lib/tests 2024-05-13T13:57:07,882 creating build/lib/tests/integration 2024-05-13T13:57:07,883 copying tests/integration/__init__.py -> build/lib/tests/integration 2024-05-13T13:57:07,885 creating build/lib/tests/unit 2024-05-13T13:57:07,886 copying tests/unit/test_slurm_client.py -> build/lib/tests/unit 2024-05-13T13:57:07,889 copying tests/unit/__init__.py -> build/lib/tests/unit 2024-05-13T13:57:07,890 running egg_info 2024-05-13T13:57:07,895 writing biomero.egg-info/PKG-INFO 2024-05-13T13:57:07,899 writing dependency_links to biomero.egg-info/dependency_links.txt 2024-05-13T13:57:07,901 writing requirements to biomero.egg-info/requires.txt 2024-05-13T13:57:07,903 writing top-level names to biomero.egg-info/top_level.txt 2024-05-13T13:57:07,938 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-13T13:57:07,941 reading manifest file 'biomero.egg-info/SOURCES.txt' 2024-05-13T13:57:07,945 reading manifest template 'MANIFEST.in' 2024-05-13T13:57:07,954 adding license file 'LICENSE' 2024-05-13T13:57:07,958 writing manifest file 'biomero.egg-info/SOURCES.txt' 2024-05-13T13:57:07,967 copying resources/convert_job_array.sh -> build/lib/resources 2024-05-13T13:57:07,969 copying resources/convert_zarr_to_tiff.def -> build/lib/resources 2024-05-13T13:57:07,971 copying resources/example.config -> build/lib/resources 2024-05-13T13:57:07,973 copying resources/job_template.sh -> build/lib/resources 2024-05-13T13:57:07,975 copying resources/pull_images.sh -> build/lib/resources 2024-05-13T13:57:07,977 copying resources/slurm-config.ini -> build/lib/resources 2024-05-13T13:57:07,980 copying docs/Makefile -> build/lib/docs 2024-05-13T13:57:07,982 copying docs/index.rst -> build/lib/docs 2024-05-13T13:57:07,984 copying docs/make.bat -> build/lib/docs 2024-05-13T13:57:07,986 copying docs/modules.rst -> build/lib/docs 2024-05-13T13:57:07,988 copying docs/omero_slurm_client.rst -> build/lib/docs 2024-05-13T13:57:07,990 copying docs/readme_link.md -> build/lib/docs 2024-05-13T13:57:07,992 copying docs/requirements.txt -> build/lib/docs 2024-05-13T13:57:07,994 copying docs/tutorial_link.md -> build/lib/docs 2024-05-13T13:57:07,996 creating build/lib/resources/tutorials 2024-05-13T13:57:07,997 copying resources/tutorials/tutorial_Azure_slurm.md -> build/lib/resources/tutorials 2024-05-13T13:57:08,000 copying resources/tutorials/tutorial_GoogleCloud_slurm.md -> build/lib/resources/tutorials 2024-05-13T13:57:08,003 copying resources/tutorials/tutorial_cellexpansion.md -> build/lib/resources/tutorials 2024-05-13T13:57:08,006 copying resources/tutorials/tutorial_cellprofiler.md -> build/lib/resources/tutorials 2024-05-13T13:57:08,009 copying resources/tutorials/tutorial_local_slurm.md -> build/lib/resources/tutorials 2024-05-13T13:57:08,014 creating build/lib/resources/tutorials/images 2024-05-13T13:57:08,014 copying resources/tutorials/images/Cells.tif -> build/lib/resources/tutorials/images 2024-05-13T13:57:08,024 copying resources/tutorials/images/cellexpansion.png -> build/lib/resources/tutorials/images 2024-05-13T13:57:08,036 copying resources/tutorials/images/gc_allow_ssh.PNG -> build/lib/resources/tutorials/images 2024-05-13T13:57:08,042 copying resources/tutorials/images/nuclei_labels.png -> build/lib/resources/tutorials/images 2024-05-13T13:57:08,050 copying resources/tutorials/images/webclient_init_env.PNG -> build/lib/resources/tutorials/images 2024-05-13T13:57:08,053 copying resources/tutorials/images/webclient_init_env_done.PNG -> build/lib/resources/tutorials/images 2024-05-13T13:57:08,056 copying resources/tutorials/images/webclient_run_cellpose.PNG -> build/lib/resources/tutorials/images 2024-05-13T13:57:08,060 copying resources/tutorials/images/webclient_run_workflow.PNG -> build/lib/resources/tutorials/images 2024-05-13T13:57:08,075 installing to build/bdist.linux-armv7l/wheel 2024-05-13T13:57:08,075 running install 2024-05-13T13:57:08,100 running install_lib 2024-05-13T13:57:08,106 creating build/bdist.linux-armv7l 2024-05-13T13:57:08,107 creating build/bdist.linux-armv7l/wheel 2024-05-13T13:57:08,109 creating build/bdist.linux-armv7l/wheel/biomero 2024-05-13T13:57:08,110 copying build/lib/biomero/constants.py -> build/bdist.linux-armv7l/wheel/biomero 2024-05-13T13:57:08,113 copying build/lib/biomero/slurm_client.py -> build/bdist.linux-armv7l/wheel/biomero 2024-05-13T13:57:08,117 copying build/lib/biomero/__init__.py -> build/bdist.linux-armv7l/wheel/biomero 2024-05-13T13:57:08,120 creating build/bdist.linux-armv7l/wheel/resources 2024-05-13T13:57:08,122 creating build/bdist.linux-armv7l/wheel/resources/tutorials 2024-05-13T13:57:08,123 copying build/lib/resources/tutorials/tutorial_Azure_slurm.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-05-13T13:57:08,127 copying build/lib/resources/tutorials/tutorial_cellprofiler.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-05-13T13:57:08,130 copying build/lib/resources/tutorials/tutorial_cellexpansion.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-05-13T13:57:08,133 copying build/lib/resources/tutorials/tutorial_local_slurm.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-05-13T13:57:08,136 copying build/lib/resources/tutorials/tutorial_GoogleCloud_slurm.md -> build/bdist.linux-armv7l/wheel/resources/tutorials 2024-05-13T13:57:08,139 creating build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-13T13:57:08,140 copying build/lib/resources/tutorials/images/webclient_run_cellpose.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-13T13:57:08,143 copying build/lib/resources/tutorials/images/Cells.tif -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-13T13:57:08,153 copying build/lib/resources/tutorials/images/nuclei_labels.png -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-13T13:57:08,160 copying build/lib/resources/tutorials/images/webclient_run_workflow.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-13T13:57:08,163 copying build/lib/resources/tutorials/images/webclient_init_env.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-13T13:57:08,166 copying build/lib/resources/tutorials/images/gc_allow_ssh.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-13T13:57:08,170 copying build/lib/resources/tutorials/images/webclient_init_env_done.PNG -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-13T13:57:08,172 copying build/lib/resources/tutorials/images/cellexpansion.png -> build/bdist.linux-armv7l/wheel/resources/tutorials/images 2024-05-13T13:57:08,180 copying build/lib/resources/example.config -> build/bdist.linux-armv7l/wheel/resources 2024-05-13T13:57:08,181 copying build/lib/resources/convert_zarr_to_tiff.def -> build/bdist.linux-armv7l/wheel/resources 2024-05-13T13:57:08,183 copying build/lib/resources/pull_images.sh -> build/bdist.linux-armv7l/wheel/resources 2024-05-13T13:57:08,185 copying build/lib/resources/convert_zarr_to_tiff.py -> build/bdist.linux-armv7l/wheel/resources 2024-05-13T13:57:08,187 copying build/lib/resources/slurm-config.ini -> build/bdist.linux-armv7l/wheel/resources 2024-05-13T13:57:08,189 copying build/lib/resources/job_template.sh -> build/bdist.linux-armv7l/wheel/resources 2024-05-13T13:57:08,191 copying build/lib/resources/__init__.py -> build/bdist.linux-armv7l/wheel/resources 2024-05-13T13:57:08,193 copying build/lib/resources/convert_job_array.sh -> build/bdist.linux-armv7l/wheel/resources 2024-05-13T13:57:08,196 creating build/bdist.linux-armv7l/wheel/tests 2024-05-13T13:57:08,197 creating build/bdist.linux-armv7l/wheel/tests/integration 2024-05-13T13:57:08,199 copying build/lib/tests/integration/__init__.py -> build/bdist.linux-armv7l/wheel/tests/integration 2024-05-13T13:57:08,201 creating build/bdist.linux-armv7l/wheel/tests/unit 2024-05-13T13:57:08,202 copying build/lib/tests/unit/test_slurm_client.py -> build/bdist.linux-armv7l/wheel/tests/unit 2024-05-13T13:57:08,205 copying build/lib/tests/unit/__init__.py -> build/bdist.linux-armv7l/wheel/tests/unit 2024-05-13T13:57:08,208 creating build/bdist.linux-armv7l/wheel/docs 2024-05-13T13:57:08,209 copying build/lib/docs/conf.py -> build/bdist.linux-armv7l/wheel/docs 2024-05-13T13:57:08,212 copying build/lib/docs/requirements.txt -> build/bdist.linux-armv7l/wheel/docs 2024-05-13T13:57:08,215 copying build/lib/docs/index.rst -> build/bdist.linux-armv7l/wheel/docs 2024-05-13T13:57:08,217 copying build/lib/docs/modules.rst -> build/bdist.linux-armv7l/wheel/docs 2024-05-13T13:57:08,219 copying build/lib/docs/readme_link.md -> build/bdist.linux-armv7l/wheel/docs 2024-05-13T13:57:08,221 copying build/lib/docs/Makefile -> build/bdist.linux-armv7l/wheel/docs 2024-05-13T13:57:08,223 copying build/lib/docs/make.bat -> build/bdist.linux-armv7l/wheel/docs 2024-05-13T13:57:08,225 copying build/lib/docs/omero_slurm_client.rst -> build/bdist.linux-armv7l/wheel/docs 2024-05-13T13:57:08,227 copying build/lib/docs/tutorial_link.md -> build/bdist.linux-armv7l/wheel/docs 2024-05-13T13:57:08,228 running install_egg_info 2024-05-13T13:57:08,233 Copying biomero.egg-info to build/bdist.linux-armv7l/wheel/biomero-1.9.0-py3.11.egg-info 2024-05-13T13:57:08,244 running install_scripts 2024-05-13T13:57:08,263 creating build/bdist.linux-armv7l/wheel/biomero-1.9.0.dist-info/WHEEL 2024-05-13T13:57:08,266 creating '/tmp/pip-wheel-uh2ioylk/.tmp-8h1k9jng/biomero-1.9.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-13T13:57:08,268 adding 'biomero/__init__.py' 2024-05-13T13:57:08,269 adding 'biomero/constants.py' 2024-05-13T13:57:08,279 adding 'biomero/slurm_client.py' 2024-05-13T13:57:08,282 adding 'docs/Makefile' 2024-05-13T13:57:08,283 adding 'docs/conf.py' 2024-05-13T13:57:08,285 adding 'docs/index.rst' 2024-05-13T13:57:08,286 adding 'docs/make.bat' 2024-05-13T13:57:08,287 adding 'docs/modules.rst' 2024-05-13T13:57:08,288 adding 'docs/omero_slurm_client.rst' 2024-05-13T13:57:08,289 adding 'docs/readme_link.md' 2024-05-13T13:57:08,290 adding 'docs/requirements.txt' 2024-05-13T13:57:08,291 adding 'docs/tutorial_link.md' 2024-05-13T13:57:08,293 adding 'resources/__init__.py' 2024-05-13T13:57:08,294 adding 'resources/convert_job_array.sh' 2024-05-13T13:57:08,295 adding 'resources/convert_zarr_to_tiff.def' 2024-05-13T13:57:08,297 adding 'resources/convert_zarr_to_tiff.py' 2024-05-13T13:57:08,298 adding 'resources/example.config' 2024-05-13T13:57:08,299 adding 'resources/job_template.sh' 2024-05-13T13:57:08,301 adding 'resources/pull_images.sh' 2024-05-13T13:57:08,302 adding 'resources/slurm-config.ini' 2024-05-13T13:57:08,306 adding 'resources/tutorials/tutorial_Azure_slurm.md' 2024-05-13T13:57:08,308 adding 'resources/tutorials/tutorial_GoogleCloud_slurm.md' 2024-05-13T13:57:08,310 adding 'resources/tutorials/tutorial_cellexpansion.md' 2024-05-13T13:57:08,313 adding 'resources/tutorials/tutorial_cellprofiler.md' 2024-05-13T13:57:08,317 adding 'resources/tutorials/tutorial_local_slurm.md' 2024-05-13T13:57:08,358 adding 'resources/tutorials/images/Cells.tif' 2024-05-13T13:57:08,395 adding 'resources/tutorials/images/cellexpansion.png' 2024-05-13T13:57:08,407 adding 'resources/tutorials/images/gc_allow_ssh.PNG' 2024-05-13T13:57:08,430 adding 'resources/tutorials/images/nuclei_labels.png' 2024-05-13T13:57:08,433 adding 'resources/tutorials/images/webclient_init_env.PNG' 2024-05-13T13:57:08,436 adding 'resources/tutorials/images/webclient_init_env_done.PNG' 2024-05-13T13:57:08,440 adding 'resources/tutorials/images/webclient_run_cellpose.PNG' 2024-05-13T13:57:08,446 adding 'resources/tutorials/images/webclient_run_workflow.PNG' 2024-05-13T13:57:08,448 adding 'tests/integration/__init__.py' 2024-05-13T13:57:08,449 adding 'tests/unit/__init__.py' 2024-05-13T13:57:08,453 adding 'tests/unit/test_slurm_client.py' 2024-05-13T13:57:08,456 adding 'biomero-1.9.0.dist-info/LICENSE' 2024-05-13T13:57:08,463 adding 'biomero-1.9.0.dist-info/METADATA' 2024-05-13T13:57:08,464 adding 'biomero-1.9.0.dist-info/WHEEL' 2024-05-13T13:57:08,465 adding 'biomero-1.9.0.dist-info/top_level.txt' 2024-05-13T13:57:08,466 adding 'biomero-1.9.0.dist-info/RECORD' 2024-05-13T13:57:08,483 removing build/bdist.linux-armv7l/wheel 2024-05-13T13:57:08,625 Building wheel for biomero (pyproject.toml): finished with status 'done' 2024-05-13T13:57:08,654 Created wheel for biomero: filename=biomero-1.9.0-py3-none-any.whl size=1092938 sha256=d7b46dbddbc02213c8058fff735666ca242165070470776408d141210b02cc6b 2024-05-13T13:57:08,655 Stored in directory: /tmp/pip-ephem-wheel-cache-n4gfjgyj/wheels/23/16/c1/542c66c0c9b4e4825d5dcc4f000f2a23c58fb1d592a3c4eb18 2024-05-13T13:57:08,678 Successfully built biomero 2024-05-13T13:57:08,710 Removed build tracker: '/tmp/pip-build-tracker-hfwxxwf4'