2024-05-15T15:24:34,918 Created temporary directory: /tmp/pip-build-tracker-ip0929wb 2024-05-15T15:24:34,920 Initialized build tracking at /tmp/pip-build-tracker-ip0929wb 2024-05-15T15:24:34,920 Created build tracker: /tmp/pip-build-tracker-ip0929wb 2024-05-15T15:24:34,921 Entered build tracker: /tmp/pip-build-tracker-ip0929wb 2024-05-15T15:24:34,921 Created temporary directory: /tmp/pip-wheel-r_7nzh_y 2024-05-15T15:24:34,924 Created temporary directory: /tmp/pip-ephem-wheel-cache-6s36_579 2024-05-15T15:24:34,949 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-05-15T15:24:34,952 2 location(s) to search for versions of atlas-densities: 2024-05-15T15:24:34,952 * https://pypi.org/simple/atlas-densities/ 2024-05-15T15:24:34,952 * https://www.piwheels.org/simple/atlas-densities/ 2024-05-15T15:24:34,953 Fetching project page and analyzing links: https://pypi.org/simple/atlas-densities/ 2024-05-15T15:24:34,954 Getting page https://pypi.org/simple/atlas-densities/ 2024-05-15T15:24:34,955 Found index url https://pypi.org/simple/ 2024-05-15T15:24:35,169 Fetched page https://pypi.org/simple/atlas-densities/ as application/vnd.pypi.simple.v1+json 2024-05-15T15:24:35,172 Found link https://files.pythonhosted.org/packages/75/a0/31e863dae4118b005ede7f6d9098a6910b9864be8a7912235629124fd1fe/atlas-densities-0.1.1.dev1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1.dev1 2024-05-15T15:24:35,173 Found link https://files.pythonhosted.org/packages/de/06/e8be8865b4bd500f567d873b884c95bc950e82d6b629daf4d2b51feee07f/atlas-densities-0.1.1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1 2024-05-15T15:24:35,174 Found link https://files.pythonhosted.org/packages/1c/7f/424e4e2a31de90b29ad4b08c106a94110c84fd3472800a26707cb6793cda/atlas-densities-0.1.2.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.2 2024-05-15T15:24:35,175 Found link https://files.pythonhosted.org/packages/d4/ff/487cd59cb1c04b581dfba1c835112a7d148c70f90af88e968e5013cfd229/atlas-densities-0.1.3.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.3 2024-05-15T15:24:35,176 Found link https://files.pythonhosted.org/packages/86/f5/7c7feea0c4c3d9bed1be86bed2d079ec3d076053276e24de09639bf6c4dd/atlas-densities-0.1.4.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.4 2024-05-15T15:24:35,177 Found link https://files.pythonhosted.org/packages/2c/ed/41e6c8f2ff9247f7c5b77a43c28727bf4c9a70bf1e7d9b6d2683e02be24e/atlas-densities-0.1.5.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.5 2024-05-15T15:24:35,178 Found link https://files.pythonhosted.org/packages/21/c8/9e8d339c85e1dc6c8aa7150f71176e1c86465678e142550fc02ff9298e9b/atlas-densities-0.2.0.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.0 2024-05-15T15:24:35,179 Found link https://files.pythonhosted.org/packages/81/59/e8354e4210eca90f39bf76f7f85aa7bb627fe4fe13eaacd772f1069d7f9e/atlas-densities-0.2.1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.1 2024-05-15T15:24:35,180 Found link https://files.pythonhosted.org/packages/36/b2/076a51f33be3c6886d190364797e6a5abb670a031788ead6bdd23a64f4f0/atlas-densities-0.2.2.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.2 2024-05-15T15:24:35,181 Found link https://files.pythonhosted.org/packages/ab/8a/6fe71c5390bea9c0986738ac7216b6a7ea2719e3e68b2314dad3abd44f9b/atlas-densities-0.2.3.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.3 2024-05-15T15:24:35,182 Found link https://files.pythonhosted.org/packages/5b/b3/47076a1bc880f3dcfa3c42e0f1035d309317cb005e1ac829946a60b320e2/atlas-densities-0.2.4.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.4 2024-05-15T15:24:35,183 Found link https://files.pythonhosted.org/packages/e8/4f/a60e3f9e8be16058bf54af99123ca941d52a717980ab248c075a9c03ae34/atlas-densities-0.2.5.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.5 2024-05-15T15:24:35,184 Fetching project page and analyzing links: https://www.piwheels.org/simple/atlas-densities/ 2024-05-15T15:24:35,185 Getting page https://www.piwheels.org/simple/atlas-densities/ 2024-05-15T15:24:35,186 Found index url https://www.piwheels.org/simple/ 2024-05-15T15:24:35,678 Fetched page https://www.piwheels.org/simple/atlas-densities/ as text/html 2024-05-15T15:24:35,682 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.2.4-py3-none-any.whl#sha256=933b5e71dd470df8321b0a6c40150393e042b958bd61b12707c5f37413232d52 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-05-15T15:24:35,683 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.2.3-py3-none-any.whl#sha256=12c86c3b2dd7f0853e20bd64def407cf9e52a465208037f252dd544f2de8e33b (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-05-15T15:24:35,683 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.2.2-py3-none-any.whl#sha256=6d563eb822c5ce0bf359464a96b5806b1d5221bdc69cc30d19d0e685368536ec (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-05-15T15:24:35,684 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.2.1-py3-none-any.whl#sha256=7b2fb4c8ebfb6deda2a12d883dbdfeb529aa0b2bfbc4034d0808edd6a289bcee (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-05-15T15:24:35,684 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.2.0-py3-none-any.whl#sha256=fb4c5d0d67c2e0fa95f43bf995117dc4d8958809fb8d795522e647de85a2e7e4 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-05-15T15:24:35,685 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.5-py3-none-any.whl#sha256=5fef5da80583667be561af3afe70062d015ef24da71c3bef176043bea603c2c6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-05-15T15:24:35,685 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.4-py3-none-any.whl#sha256=d4956925426510d1496ee873465e8178b2599c2fc5e1329503d8335ce50fd1c6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-05-15T15:24:35,686 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.3-py3-none-any.whl#sha256=e570061be8379bb89033a1cbbb97eb0754c41fe0214fa16447a01c7ec91a1a9f (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-05-15T15:24:35,686 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.2-py3-none-any.whl#sha256=8525ddeb5820cac5646a8e64609c379dfeda0ef3c1e0fddf611b904fe6717f9a (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-05-15T15:24:35,687 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1-py3-none-any.whl#sha256=0d8958b6a96c5a8bbb5f56954b074f97f56f62d4bf7d2feb02f324fdd9365ce4 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-05-15T15:24:35,687 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1.dev1-py3-none-any.whl#sha256=d5e13258a7e5662c891cc5061dc517d14138a9ea76e72ad43d422c688c5c73b6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2024-05-15T15:24:35,688 Skipping link: not a file: https://www.piwheels.org/simple/atlas-densities/ 2024-05-15T15:24:35,689 Skipping link: not a file: https://pypi.org/simple/atlas-densities/ 2024-05-15T15:24:35,708 Given no hashes to check 1 links for project 'atlas-densities': discarding no candidates 2024-05-15T15:24:35,726 Collecting atlas-densities==0.2.5 2024-05-15T15:24:35,728 Created temporary directory: /tmp/pip-unpack-5ou2hjeq 2024-05-15T15:24:35,966 Downloading atlas-densities-0.2.5.tar.gz (1.3 MB) 2024-05-15T15:24:36,692 Added atlas-densities==0.2.5 from https://files.pythonhosted.org/packages/e8/4f/a60e3f9e8be16058bf54af99123ca941d52a717980ab248c075a9c03ae34/atlas-densities-0.2.5.tar.gz to build tracker '/tmp/pip-build-tracker-ip0929wb' 2024-05-15T15:24:36,694 Running setup.py (path:/tmp/pip-wheel-r_7nzh_y/atlas-densities_22b63e8530b049ce838c769eb4703c70/setup.py) egg_info for package atlas-densities 2024-05-15T15:24:36,694 Created temporary directory: /tmp/pip-pip-egg-info-yg02ot_f 2024-05-15T15:24:36,695 Preparing metadata (setup.py): started 2024-05-15T15:24:36,696 Running command python setup.py egg_info 2024-05-15T15:24:37,474 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-05-15T15:24:37,474 !! 2024-05-15T15:24:37,475 ******************************************************************************** 2024-05-15T15:24:37,475 Requirements should be satisfied by a PEP 517 installer. 2024-05-15T15:24:37,476 If you are using pip, you can try `pip install --use-pep517`. 2024-05-15T15:24:37,476 ******************************************************************************** 2024-05-15T15:24:37,477 !! 2024-05-15T15:24:37,478 dist.fetch_build_eggs(dist.setup_requires) 2024-05-15T15:24:40,593 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2024-05-15T15:24:40,593 Traceback (most recent call last): 2024-05-15T15:24:40,594 File "/tmp/pip-wheel-r_7nzh_y/atlas-densities_22b63e8530b049ce838c769eb4703c70/.eggs/setuptools_scm-8.1.0-py3.11.egg/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject 2024-05-15T15:24:40,594 section = defn.get("tool", {})[tool_name] 2024-05-15T15:24:40,595 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2024-05-15T15:24:40,596 KeyError: 'setuptools_scm' 2024-05-15T15:24:40,702 running egg_info 2024-05-15T15:24:40,704 creating /tmp/pip-pip-egg-info-yg02ot_f/atlas_densities.egg-info 2024-05-15T15:24:40,732 writing /tmp/pip-pip-egg-info-yg02ot_f/atlas_densities.egg-info/PKG-INFO 2024-05-15T15:24:40,737 writing dependency_links to /tmp/pip-pip-egg-info-yg02ot_f/atlas_densities.egg-info/dependency_links.txt 2024-05-15T15:24:40,739 writing entry points to /tmp/pip-pip-egg-info-yg02ot_f/atlas_densities.egg-info/entry_points.txt 2024-05-15T15:24:40,741 writing requirements to /tmp/pip-pip-egg-info-yg02ot_f/atlas_densities.egg-info/requires.txt 2024-05-15T15:24:40,742 writing top-level names to /tmp/pip-pip-egg-info-yg02ot_f/atlas_densities.egg-info/top_level.txt 2024-05-15T15:24:40,743 writing manifest file '/tmp/pip-pip-egg-info-yg02ot_f/atlas_densities.egg-info/SOURCES.txt' 2024-05-15T15:24:40,930 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-15T15:24:40,936 reading manifest file '/tmp/pip-pip-egg-info-yg02ot_f/atlas_densities.egg-info/SOURCES.txt' 2024-05-15T15:24:40,938 reading manifest template 'MANIFEST.in' 2024-05-15T15:24:40,969 adding license file 'LICENSE.txt' 2024-05-15T15:24:40,969 adding license file 'AUTHORS.txt' 2024-05-15T15:24:40,975 writing manifest file '/tmp/pip-pip-egg-info-yg02ot_f/atlas_densities.egg-info/SOURCES.txt' 2024-05-15T15:24:41,100 Preparing metadata (setup.py): finished with status 'done' 2024-05-15T15:24:41,106 Source in /tmp/pip-wheel-r_7nzh_y/atlas-densities_22b63e8530b049ce838c769eb4703c70 has version 0.2.5, which satisfies requirement atlas-densities==0.2.5 from https://files.pythonhosted.org/packages/e8/4f/a60e3f9e8be16058bf54af99123ca941d52a717980ab248c075a9c03ae34/atlas-densities-0.2.5.tar.gz 2024-05-15T15:24:41,107 Removed atlas-densities==0.2.5 from https://files.pythonhosted.org/packages/e8/4f/a60e3f9e8be16058bf54af99123ca941d52a717980ab248c075a9c03ae34/atlas-densities-0.2.5.tar.gz from build tracker '/tmp/pip-build-tracker-ip0929wb' 2024-05-15T15:24:41,115 Created temporary directory: /tmp/pip-unpack-zt4ddk_a 2024-05-15T15:24:41,116 Created temporary directory: /tmp/pip-unpack-ofjs0h8s 2024-05-15T15:24:41,136 Building wheels for collected packages: atlas-densities 2024-05-15T15:24:41,140 Created temporary directory: /tmp/pip-wheel-dzi6g41g 2024-05-15T15:24:41,141 Building wheel for atlas-densities (setup.py): started 2024-05-15T15:24:41,142 Destination directory: /tmp/pip-wheel-dzi6g41g 2024-05-15T15:24:41,142 Running command python setup.py bdist_wheel 2024-05-15T15:24:41,901 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-05-15T15:24:41,901 !! 2024-05-15T15:24:41,902 ******************************************************************************** 2024-05-15T15:24:41,903 Requirements should be satisfied by a PEP 517 installer. 2024-05-15T15:24:41,903 If you are using pip, you can try `pip install --use-pep517`. 2024-05-15T15:24:41,904 ******************************************************************************** 2024-05-15T15:24:41,905 !! 2024-05-15T15:24:41,905 dist.fetch_build_eggs(dist.setup_requires) 2024-05-15T15:24:42,471 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2024-05-15T15:24:42,471 Traceback (most recent call last): 2024-05-15T15:24:42,472 File "/tmp/pip-wheel-r_7nzh_y/atlas-densities_22b63e8530b049ce838c769eb4703c70/.eggs/setuptools_scm-8.1.0-py3.11.egg/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject 2024-05-15T15:24:42,473 section = defn.get("tool", {})[tool_name] 2024-05-15T15:24:42,473 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2024-05-15T15:24:42,474 KeyError: 'setuptools_scm' 2024-05-15T15:24:42,573 running bdist_wheel 2024-05-15T15:24:42,689 running build 2024-05-15T15:24:42,690 running build_py 2024-05-15T15:24:42,724 creating build 2024-05-15T15:24:42,725 creating build/lib 2024-05-15T15:24:42,726 creating build/lib/tests 2024-05-15T15:24:42,727 copying tests/mocking_tools.py -> build/lib/tests 2024-05-15T15:24:42,729 copying tests/__init__.py -> build/lib/tests 2024-05-15T15:24:42,731 copying tests/test_utils.py -> build/lib/tests 2024-05-15T15:24:42,733 copying tests/utils.py -> build/lib/tests 2024-05-15T15:24:42,735 creating build/lib/atlas_densities 2024-05-15T15:24:42,736 copying atlas_densities/exceptions.py -> build/lib/atlas_densities 2024-05-15T15:24:42,738 copying atlas_densities/version.py -> build/lib/atlas_densities 2024-05-15T15:24:42,740 copying atlas_densities/__init__.py -> build/lib/atlas_densities 2024-05-15T15:24:42,741 copying atlas_densities/utils.py -> build/lib/atlas_densities 2024-05-15T15:24:42,744 creating build/lib/tests/app 2024-05-15T15:24:42,745 copying tests/app/test_refined_inhibitory_neuron_densities.py -> build/lib/tests/app 2024-05-15T15:24:42,747 copying tests/app/__init__.py -> build/lib/tests/app 2024-05-15T15:24:42,748 copying tests/app/test_combination.py -> build/lib/tests/app 2024-05-15T15:24:42,754 copying tests/app/test_cell_densities.py -> build/lib/tests/app 2024-05-15T15:24:42,756 copying tests/app/test_mtype_densities.py -> build/lib/tests/app 2024-05-15T15:24:42,759 creating build/lib/tests/densities 2024-05-15T15:24:42,760 copying tests/densities/test_refined_inhibitory_neuron_density.py -> build/lib/tests/densities 2024-05-15T15:24:42,763 copying tests/densities/test_cell_counts.py -> build/lib/tests/densities 2024-05-15T15:24:42,765 copying tests/densities/test_inhibitory_neuron_density.py -> build/lib/tests/densities 2024-05-15T15:24:42,767 copying tests/densities/test_excel_reader.py -> build/lib/tests/densities 2024-05-15T15:24:42,769 copying tests/densities/test_glia_densities.py -> build/lib/tests/densities 2024-05-15T15:24:42,771 copying tests/densities/test_fitting.py -> build/lib/tests/densities 2024-05-15T15:24:42,774 copying tests/densities/test_optimization_initialization.py -> build/lib/tests/densities 2024-05-15T15:24:42,776 copying tests/densities/test_measurement_to_density.py -> build/lib/tests/densities 2024-05-15T15:24:42,779 copying tests/densities/test_mtype_densities_from_profiles.py -> build/lib/tests/densities 2024-05-15T15:24:42,781 copying tests/densities/test_inhibitory_neuron_densities_helper.py -> build/lib/tests/densities 2024-05-15T15:24:42,783 copying tests/densities/test_excitatory_inhibitory_splitting.py -> build/lib/tests/densities 2024-05-15T15:24:42,791 copying tests/densities/__init__.py -> build/lib/tests/densities 2024-05-15T15:24:42,792 copying tests/densities/test_inhibitory_neuron_density_optimization.py -> build/lib/tests/densities 2024-05-15T15:24:42,795 copying tests/densities/test_mtype_densities_from_map.py -> build/lib/tests/densities 2024-05-15T15:24:42,797 copying tests/densities/test_utils.py -> build/lib/tests/densities 2024-05-15T15:24:42,799 copying tests/densities/test_mtype_densities_from_composition.py -> build/lib/tests/densities 2024-05-15T15:24:42,802 copying tests/densities/test_cell_density.py -> build/lib/tests/densities 2024-05-15T15:24:42,804 creating build/lib/tests/combination 2024-05-15T15:24:42,805 copying tests/combination/test_annotations_combinator.py -> build/lib/tests/combination 2024-05-15T15:24:42,807 copying tests/combination/test_markers_combinator.py -> build/lib/tests/combination 2024-05-15T15:24:42,809 copying tests/combination/__init__.py -> build/lib/tests/combination 2024-05-15T15:24:42,812 creating build/lib/atlas_densities/app 2024-05-15T15:24:42,813 copying atlas_densities/app/mtype_densities.py -> build/lib/atlas_densities/app 2024-05-15T15:24:42,815 copying atlas_densities/app/combination.py -> build/lib/atlas_densities/app 2024-05-15T15:24:42,818 copying atlas_densities/app/cli.py -> build/lib/atlas_densities/app 2024-05-15T15:24:42,819 copying atlas_densities/app/__init__.py -> build/lib/atlas_densities/app 2024-05-15T15:24:42,821 copying atlas_densities/app/cell_densities.py -> build/lib/atlas_densities/app 2024-05-15T15:24:42,824 copying atlas_densities/app/utils.py -> build/lib/atlas_densities/app 2024-05-15T15:24:42,827 creating build/lib/atlas_densities/densities 2024-05-15T15:24:42,828 copying atlas_densities/densities/mtype_densities_from_composition.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,830 copying atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,832 copying atlas_densities/densities/glia_densities.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,835 copying atlas_densities/densities/inhibitory_neuron_density.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,837 copying atlas_densities/densities/cell_counts.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,839 copying atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,842 copying atlas_densities/densities/mtype_densities_from_profiles.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,845 copying atlas_densities/densities/__init__.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,847 copying atlas_densities/densities/measurement_to_density.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,850 copying atlas_densities/densities/excitatory_inhibitory_splitting.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,852 copying atlas_densities/densities/excel_reader.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,855 copying atlas_densities/densities/fitting.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,858 copying atlas_densities/densities/cell_density.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,860 copying atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,863 copying atlas_densities/densities/utils.py -> build/lib/atlas_densities/densities 2024-05-15T15:24:42,866 creating build/lib/atlas_densities/combination 2024-05-15T15:24:42,867 copying atlas_densities/combination/markers_combinator.py -> build/lib/atlas_densities/combination 2024-05-15T15:24:42,870 copying atlas_densities/combination/__init__.py -> build/lib/atlas_densities/combination 2024-05-15T15:24:42,871 copying atlas_densities/combination/annotations_combinator.py -> build/lib/atlas_densities/combination 2024-05-15T15:24:42,874 creating build/lib/atlas_densities/app/data 2024-05-15T15:24:42,875 copying atlas_densities/app/data/__init__.py -> build/lib/atlas_densities/app/data 2024-05-15T15:24:42,877 creating build/lib/atlas_densities/densities/mtype_densities_from_map 2024-05-15T15:24:42,878 copying atlas_densities/densities/mtype_densities_from_map/__init__.py -> build/lib/atlas_densities/densities/mtype_densities_from_map 2024-05-15T15:24:42,880 copying atlas_densities/densities/mtype_densities_from_map/create.py -> build/lib/atlas_densities/densities/mtype_densities_from_map 2024-05-15T15:24:42,882 copying atlas_densities/densities/mtype_densities_from_map/utils.py -> build/lib/atlas_densities/densities/mtype_densities_from_map 2024-05-15T15:24:42,884 running egg_info 2024-05-15T15:24:42,942 writing atlas_densities.egg-info/PKG-INFO 2024-05-15T15:24:42,947 writing dependency_links to atlas_densities.egg-info/dependency_links.txt 2024-05-15T15:24:42,949 writing entry points to atlas_densities.egg-info/entry_points.txt 2024-05-15T15:24:42,950 writing requirements to atlas_densities.egg-info/requires.txt 2024-05-15T15:24:42,952 writing top-level names to atlas_densities.egg-info/top_level.txt 2024-05-15T15:24:43,058 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-05-15T15:24:43,061 reading manifest file 'atlas_densities.egg-info/SOURCES.txt' 2024-05-15T15:24:43,070 reading manifest template 'MANIFEST.in' 2024-05-15T15:24:43,099 adding license file 'LICENSE.txt' 2024-05-15T15:24:43,099 adding license file 'AUTHORS.txt' 2024-05-15T15:24:43,107 writing manifest file 'atlas_densities.egg-info/SOURCES.txt' 2024-05-15T15:24:43,110 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.markers' is absent from the `packages` configuration. 2024-05-15T15:24:43,111 !! 2024-05-15T15:24:43,112 ******************************************************************************** 2024-05-15T15:24:43,113 ############################ 2024-05-15T15:24:43,113 # Package would be ignored # 2024-05-15T15:24:43,114 ############################ 2024-05-15T15:24:43,114 Python recognizes 'atlas_densities.app.data.markers' as an importable package[^1], 2024-05-15T15:24:43,115 but it is absent from setuptools' `packages` configuration. 2024-05-15T15:24:43,116 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-15T15:24:43,117 package, please make sure that 'atlas_densities.app.data.markers' is explicitly added 2024-05-15T15:24:43,117 to the `packages` configuration field. 2024-05-15T15:24:43,118 Alternatively, you can also rely on setuptools' discovery methods 2024-05-15T15:24:43,119 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-15T15:24:43,119 instead of `find_packages(...)`/`find:`). 2024-05-15T15:24:43,121 You can read more about "package discovery" on setuptools documentation page: 2024-05-15T15:24:43,122 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-15T15:24:43,122 If you don't want 'atlas_densities.app.data.markers' to be distributed and are 2024-05-15T15:24:43,123 already explicitly excluding 'atlas_densities.app.data.markers' via 2024-05-15T15:24:43,123 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-15T15:24:43,124 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-15T15:24:43,124 combination with a more fine grained `package-data` configuration. 2024-05-15T15:24:43,125 You can read more about "package data files" on setuptools documentation page: 2024-05-15T15:24:43,126 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-15T15:24:43,128 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-15T15:24:43,128 even if it does not contain any `.py` files. 2024-05-15T15:24:43,129 On the other hand, currently there is no concept of package data 2024-05-15T15:24:43,129 directory, all directories are treated like packages. 2024-05-15T15:24:43,130 ******************************************************************************** 2024-05-15T15:24:43,130 !! 2024-05-15T15:24:43,131 check.warn(importable) 2024-05-15T15:24:43,131 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.measurements' is absent from the `packages` configuration. 2024-05-15T15:24:43,132 !! 2024-05-15T15:24:43,133 ******************************************************************************** 2024-05-15T15:24:43,134 ############################ 2024-05-15T15:24:43,134 # Package would be ignored # 2024-05-15T15:24:43,135 ############################ 2024-05-15T15:24:43,135 Python recognizes 'atlas_densities.app.data.measurements' as an importable package[^1], 2024-05-15T15:24:43,136 but it is absent from setuptools' `packages` configuration. 2024-05-15T15:24:43,137 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-15T15:24:43,138 package, please make sure that 'atlas_densities.app.data.measurements' is explicitly added 2024-05-15T15:24:43,138 to the `packages` configuration field. 2024-05-15T15:24:43,139 Alternatively, you can also rely on setuptools' discovery methods 2024-05-15T15:24:43,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-15T15:24:43,141 instead of `find_packages(...)`/`find:`). 2024-05-15T15:24:43,142 You can read more about "package discovery" on setuptools documentation page: 2024-05-15T15:24:43,145 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-15T15:24:43,149 If you don't want 'atlas_densities.app.data.measurements' to be distributed and are 2024-05-15T15:24:43,151 already explicitly excluding 'atlas_densities.app.data.measurements' via 2024-05-15T15:24:43,151 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-15T15:24:43,152 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-15T15:24:43,153 combination with a more fine grained `package-data` configuration. 2024-05-15T15:24:43,154 You can read more about "package data files" on setuptools documentation page: 2024-05-15T15:24:43,155 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-15T15:24:43,157 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-15T15:24:43,157 even if it does not contain any `.py` files. 2024-05-15T15:24:43,158 On the other hand, currently there is no concept of package data 2024-05-15T15:24:43,159 directory, all directories are treated like packages. 2024-05-15T15:24:43,160 ******************************************************************************** 2024-05-15T15:24:43,161 !! 2024-05-15T15:24:43,161 check.warn(importable) 2024-05-15T15:24:43,162 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.metadata' is absent from the `packages` configuration. 2024-05-15T15:24:43,162 !! 2024-05-15T15:24:43,163 ******************************************************************************** 2024-05-15T15:24:43,164 ############################ 2024-05-15T15:24:43,164 # Package would be ignored # 2024-05-15T15:24:43,165 ############################ 2024-05-15T15:24:43,165 Python recognizes 'atlas_densities.app.data.metadata' as an importable package[^1], 2024-05-15T15:24:43,166 but it is absent from setuptools' `packages` configuration. 2024-05-15T15:24:43,167 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-15T15:24:43,167 package, please make sure that 'atlas_densities.app.data.metadata' is explicitly added 2024-05-15T15:24:43,168 to the `packages` configuration field. 2024-05-15T15:24:43,169 Alternatively, you can also rely on setuptools' discovery methods 2024-05-15T15:24:43,169 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-15T15:24:43,170 instead of `find_packages(...)`/`find:`). 2024-05-15T15:24:43,171 You can read more about "package discovery" on setuptools documentation page: 2024-05-15T15:24:43,172 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-15T15:24:43,173 If you don't want 'atlas_densities.app.data.metadata' to be distributed and are 2024-05-15T15:24:43,173 already explicitly excluding 'atlas_densities.app.data.metadata' via 2024-05-15T15:24:43,174 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-15T15:24:43,174 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-15T15:24:43,175 combination with a more fine grained `package-data` configuration. 2024-05-15T15:24:43,176 You can read more about "package data files" on setuptools documentation page: 2024-05-15T15:24:43,177 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-15T15:24:43,179 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-15T15:24:43,179 even if it does not contain any `.py` files. 2024-05-15T15:24:43,180 On the other hand, currently there is no concept of package data 2024-05-15T15:24:43,180 directory, all directories are treated like packages. 2024-05-15T15:24:43,181 ******************************************************************************** 2024-05-15T15:24:43,182 !! 2024-05-15T15:24:43,182 check.warn(importable) 2024-05-15T15:24:43,183 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes' is absent from the `packages` configuration. 2024-05-15T15:24:43,183 !! 2024-05-15T15:24:43,189 ******************************************************************************** 2024-05-15T15:24:43,191 ############################ 2024-05-15T15:24:43,192 # Package would be ignored # 2024-05-15T15:24:43,192 ############################ 2024-05-15T15:24:43,193 Python recognizes 'atlas_densities.app.data.mtypes' as an importable package[^1], 2024-05-15T15:24:43,193 but it is absent from setuptools' `packages` configuration. 2024-05-15T15:24:43,195 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-15T15:24:43,196 package, please make sure that 'atlas_densities.app.data.mtypes' is explicitly added 2024-05-15T15:24:43,196 to the `packages` configuration field. 2024-05-15T15:24:43,197 Alternatively, you can also rely on setuptools' discovery methods 2024-05-15T15:24:43,198 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-15T15:24:43,198 instead of `find_packages(...)`/`find:`). 2024-05-15T15:24:43,199 You can read more about "package discovery" on setuptools documentation page: 2024-05-15T15:24:43,200 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-15T15:24:43,201 If you don't want 'atlas_densities.app.data.mtypes' to be distributed and are 2024-05-15T15:24:43,201 already explicitly excluding 'atlas_densities.app.data.mtypes' via 2024-05-15T15:24:43,202 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-15T15:24:43,202 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-15T15:24:43,203 combination with a more fine grained `package-data` configuration. 2024-05-15T15:24:43,204 You can read more about "package data files" on setuptools documentation page: 2024-05-15T15:24:43,205 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-15T15:24:43,207 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-15T15:24:43,207 even if it does not contain any `.py` files. 2024-05-15T15:24:43,208 On the other hand, currently there is no concept of package data 2024-05-15T15:24:43,208 directory, all directories are treated like packages. 2024-05-15T15:24:43,209 ******************************************************************************** 2024-05-15T15:24:43,210 !! 2024-05-15T15:24:43,211 check.warn(importable) 2024-05-15T15:24:43,211 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.composition' is absent from the `packages` configuration. 2024-05-15T15:24:43,212 !! 2024-05-15T15:24:43,213 ******************************************************************************** 2024-05-15T15:24:43,214 ############################ 2024-05-15T15:24:43,214 # Package would be ignored # 2024-05-15T15:24:43,215 ############################ 2024-05-15T15:24:43,215 Python recognizes 'atlas_densities.app.data.mtypes.composition' as an importable package[^1], 2024-05-15T15:24:43,216 but it is absent from setuptools' `packages` configuration. 2024-05-15T15:24:43,217 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-15T15:24:43,218 package, please make sure that 'atlas_densities.app.data.mtypes.composition' is explicitly added 2024-05-15T15:24:43,219 to the `packages` configuration field. 2024-05-15T15:24:43,220 Alternatively, you can also rely on setuptools' discovery methods 2024-05-15T15:24:43,221 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-15T15:24:43,221 instead of `find_packages(...)`/`find:`). 2024-05-15T15:24:43,223 You can read more about "package discovery" on setuptools documentation page: 2024-05-15T15:24:43,227 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-15T15:24:43,231 If you don't want 'atlas_densities.app.data.mtypes.composition' to be distributed and are 2024-05-15T15:24:43,236 already explicitly excluding 'atlas_densities.app.data.mtypes.composition' via 2024-05-15T15:24:43,237 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-15T15:24:43,237 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-15T15:24:43,238 combination with a more fine grained `package-data` configuration. 2024-05-15T15:24:43,239 You can read more about "package data files" on setuptools documentation page: 2024-05-15T15:24:43,240 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-15T15:24:43,241 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-15T15:24:43,242 even if it does not contain any `.py` files. 2024-05-15T15:24:43,243 On the other hand, currently there is no concept of package data 2024-05-15T15:24:43,245 directory, all directories are treated like packages. 2024-05-15T15:24:43,246 ******************************************************************************** 2024-05-15T15:24:43,247 !! 2024-05-15T15:24:43,247 check.warn(importable) 2024-05-15T15:24:43,248 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.density_profiles' is absent from the `packages` configuration. 2024-05-15T15:24:43,248 !! 2024-05-15T15:24:43,250 ******************************************************************************** 2024-05-15T15:24:43,252 ############################ 2024-05-15T15:24:43,253 # Package would be ignored # 2024-05-15T15:24:43,253 ############################ 2024-05-15T15:24:43,254 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles' as an importable package[^1], 2024-05-15T15:24:43,254 but it is absent from setuptools' `packages` configuration. 2024-05-15T15:24:43,255 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-15T15:24:43,256 package, please make sure that 'atlas_densities.app.data.mtypes.density_profiles' is explicitly added 2024-05-15T15:24:43,257 to the `packages` configuration field. 2024-05-15T15:24:43,258 Alternatively, you can also rely on setuptools' discovery methods 2024-05-15T15:24:43,258 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-15T15:24:43,259 instead of `find_packages(...)`/`find:`). 2024-05-15T15:24:43,260 You can read more about "package discovery" on setuptools documentation page: 2024-05-15T15:24:43,261 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-15T15:24:43,262 If you don't want 'atlas_densities.app.data.mtypes.density_profiles' to be distributed and are 2024-05-15T15:24:43,263 already explicitly excluding 'atlas_densities.app.data.mtypes.density_profiles' via 2024-05-15T15:24:43,263 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-15T15:24:43,264 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-15T15:24:43,264 combination with a more fine grained `package-data` configuration. 2024-05-15T15:24:43,265 You can read more about "package data files" on setuptools documentation page: 2024-05-15T15:24:43,266 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-15T15:24:43,268 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-15T15:24:43,268 even if it does not contain any `.py` files. 2024-05-15T15:24:43,269 On the other hand, currently there is no concept of package data 2024-05-15T15:24:43,269 directory, all directories are treated like packages. 2024-05-15T15:24:43,270 ******************************************************************************** 2024-05-15T15:24:43,270 !! 2024-05-15T15:24:43,271 check.warn(importable) 2024-05-15T15:24:43,271 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.density_profiles.meta' is absent from the `packages` configuration. 2024-05-15T15:24:43,272 !! 2024-05-15T15:24:43,274 ******************************************************************************** 2024-05-15T15:24:43,274 ############################ 2024-05-15T15:24:43,274 # Package would be ignored # 2024-05-15T15:24:43,275 ############################ 2024-05-15T15:24:43,275 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.meta' as an importable package[^1], 2024-05-15T15:24:43,275 but it is absent from setuptools' `packages` configuration. 2024-05-15T15:24:43,276 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-15T15:24:43,277 package, please make sure that 'atlas_densities.app.data.mtypes.density_profiles.meta' is explicitly added 2024-05-15T15:24:43,277 to the `packages` configuration field. 2024-05-15T15:24:43,278 Alternatively, you can also rely on setuptools' discovery methods 2024-05-15T15:24:43,278 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-15T15:24:43,279 instead of `find_packages(...)`/`find:`). 2024-05-15T15:24:43,280 You can read more about "package discovery" on setuptools documentation page: 2024-05-15T15:24:43,281 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-15T15:24:43,282 If you don't want 'atlas_densities.app.data.mtypes.density_profiles.meta' to be distributed and are 2024-05-15T15:24:43,282 already explicitly excluding 'atlas_densities.app.data.mtypes.density_profiles.meta' via 2024-05-15T15:24:43,282 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-15T15:24:43,283 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-15T15:24:43,283 combination with a more fine grained `package-data` configuration. 2024-05-15T15:24:43,284 You can read more about "package data files" on setuptools documentation page: 2024-05-15T15:24:43,285 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-15T15:24:43,287 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-15T15:24:43,287 even if it does not contain any `.py` files. 2024-05-15T15:24:43,287 On the other hand, currently there is no concept of package data 2024-05-15T15:24:43,288 directory, all directories are treated like packages. 2024-05-15T15:24:43,288 ******************************************************************************** 2024-05-15T15:24:43,289 !! 2024-05-15T15:24:43,290 check.warn(importable) 2024-05-15T15:24:43,290 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.density_profiles.profiles' is absent from the `packages` configuration. 2024-05-15T15:24:43,291 !! 2024-05-15T15:24:43,292 ******************************************************************************** 2024-05-15T15:24:43,293 ############################ 2024-05-15T15:24:43,293 # Package would be ignored # 2024-05-15T15:24:43,294 ############################ 2024-05-15T15:24:43,294 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.profiles' as an importable package[^1], 2024-05-15T15:24:43,295 but it is absent from setuptools' `packages` configuration. 2024-05-15T15:24:43,296 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-15T15:24:43,296 package, please make sure that 'atlas_densities.app.data.mtypes.density_profiles.profiles' is explicitly added 2024-05-15T15:24:43,297 to the `packages` configuration field. 2024-05-15T15:24:43,298 Alternatively, you can also rely on setuptools' discovery methods 2024-05-15T15:24:43,298 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-15T15:24:43,299 instead of `find_packages(...)`/`find:`). 2024-05-15T15:24:43,300 You can read more about "package discovery" on setuptools documentation page: 2024-05-15T15:24:43,301 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-15T15:24:43,301 If you don't want 'atlas_densities.app.data.mtypes.density_profiles.profiles' to be distributed and are 2024-05-15T15:24:43,302 already explicitly excluding 'atlas_densities.app.data.mtypes.density_profiles.profiles' via 2024-05-15T15:24:43,302 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-15T15:24:43,303 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-15T15:24:43,303 combination with a more fine grained `package-data` configuration. 2024-05-15T15:24:43,304 You can read more about "package data files" on setuptools documentation page: 2024-05-15T15:24:43,305 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-15T15:24:43,306 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-15T15:24:43,307 even if it does not contain any `.py` files. 2024-05-15T15:24:43,307 On the other hand, currently there is no concept of package data 2024-05-15T15:24:43,307 directory, all directories are treated like packages. 2024-05-15T15:24:43,308 ******************************************************************************** 2024-05-15T15:24:43,309 !! 2024-05-15T15:24:43,309 check.warn(importable) 2024-05-15T15:24:43,310 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'atlas_densities.app.data.mtypes.probability_map' is absent from the `packages` configuration. 2024-05-15T15:24:43,310 !! 2024-05-15T15:24:43,311 ******************************************************************************** 2024-05-15T15:24:43,311 ############################ 2024-05-15T15:24:43,312 # Package would be ignored # 2024-05-15T15:24:43,312 ############################ 2024-05-15T15:24:43,313 Python recognizes 'atlas_densities.app.data.mtypes.probability_map' as an importable package[^1], 2024-05-15T15:24:43,313 but it is absent from setuptools' `packages` configuration. 2024-05-15T15:24:43,314 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-15T15:24:43,315 package, please make sure that 'atlas_densities.app.data.mtypes.probability_map' is explicitly added 2024-05-15T15:24:43,315 to the `packages` configuration field. 2024-05-15T15:24:43,316 Alternatively, you can also rely on setuptools' discovery methods 2024-05-15T15:24:43,317 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-15T15:24:43,317 instead of `find_packages(...)`/`find:`). 2024-05-15T15:24:43,318 You can read more about "package discovery" on setuptools documentation page: 2024-05-15T15:24:43,319 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-15T15:24:43,320 If you don't want 'atlas_densities.app.data.mtypes.probability_map' to be distributed and are 2024-05-15T15:24:43,321 already explicitly excluding 'atlas_densities.app.data.mtypes.probability_map' via 2024-05-15T15:24:43,321 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-15T15:24:43,322 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-15T15:24:43,322 combination with a more fine grained `package-data` configuration. 2024-05-15T15:24:43,324 You can read more about "package data files" on setuptools documentation page: 2024-05-15T15:24:43,325 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-15T15:24:43,327 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-15T15:24:43,327 even if it does not contain any `.py` files. 2024-05-15T15:24:43,328 On the other hand, currently there is no concept of package data 2024-05-15T15:24:43,328 directory, all directories are treated like packages. 2024-05-15T15:24:43,328 ******************************************************************************** 2024-05-15T15:24:43,329 !! 2024-05-15T15:24:43,329 check.warn(importable) 2024-05-15T15:24:43,330 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'tests.densities.data.meta' is absent from the `packages` configuration. 2024-05-15T15:24:43,330 !! 2024-05-15T15:24:43,331 ******************************************************************************** 2024-05-15T15:24:43,332 ############################ 2024-05-15T15:24:43,332 # Package would be ignored # 2024-05-15T15:24:43,333 ############################ 2024-05-15T15:24:43,333 Python recognizes 'tests.densities.data.meta' as an importable package[^1], 2024-05-15T15:24:43,333 but it is absent from setuptools' `packages` configuration. 2024-05-15T15:24:43,334 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-15T15:24:43,335 package, please make sure that 'tests.densities.data.meta' is explicitly added 2024-05-15T15:24:43,335 to the `packages` configuration field. 2024-05-15T15:24:43,336 Alternatively, you can also rely on setuptools' discovery methods 2024-05-15T15:24:43,337 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-15T15:24:43,337 instead of `find_packages(...)`/`find:`). 2024-05-15T15:24:43,338 You can read more about "package discovery" on setuptools documentation page: 2024-05-15T15:24:43,339 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-15T15:24:43,340 If you don't want 'tests.densities.data.meta' to be distributed and are 2024-05-15T15:24:43,341 already explicitly excluding 'tests.densities.data.meta' via 2024-05-15T15:24:43,342 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-15T15:24:43,342 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-15T15:24:43,343 combination with a more fine grained `package-data` configuration. 2024-05-15T15:24:43,344 You can read more about "package data files" on setuptools documentation page: 2024-05-15T15:24:43,345 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-15T15:24:43,346 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-15T15:24:43,347 even if it does not contain any `.py` files. 2024-05-15T15:24:43,348 On the other hand, currently there is no concept of package data 2024-05-15T15:24:43,348 directory, all directories are treated like packages. 2024-05-15T15:24:43,349 ******************************************************************************** 2024-05-15T15:24:43,350 !! 2024-05-15T15:24:43,350 check.warn(importable) 2024-05-15T15:24:43,351 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'tests.densities.data.mtypes' is absent from the `packages` configuration. 2024-05-15T15:24:43,351 !! 2024-05-15T15:24:43,353 ******************************************************************************** 2024-05-15T15:24:43,353 ############################ 2024-05-15T15:24:43,354 # Package would be ignored # 2024-05-15T15:24:43,354 ############################ 2024-05-15T15:24:43,355 Python recognizes 'tests.densities.data.mtypes' as an importable package[^1], 2024-05-15T15:24:43,356 but it is absent from setuptools' `packages` configuration. 2024-05-15T15:24:43,357 This leads to an ambiguous overall configuration. If you want to distribute this 2024-05-15T15:24:43,358 package, please make sure that 'tests.densities.data.mtypes' is explicitly added 2024-05-15T15:24:43,358 to the `packages` configuration field. 2024-05-15T15:24:43,359 Alternatively, you can also rely on setuptools' discovery methods 2024-05-15T15:24:43,360 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-05-15T15:24:43,360 instead of `find_packages(...)`/`find:`). 2024-05-15T15:24:43,361 You can read more about "package discovery" on setuptools documentation page: 2024-05-15T15:24:43,362 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-05-15T15:24:43,364 If you don't want 'tests.densities.data.mtypes' to be distributed and are 2024-05-15T15:24:43,364 already explicitly excluding 'tests.densities.data.mtypes' via 2024-05-15T15:24:43,365 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-05-15T15:24:43,365 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-05-15T15:24:43,366 combination with a more fine grained `package-data` configuration. 2024-05-15T15:24:43,367 You can read more about "package data files" on setuptools documentation page: 2024-05-15T15:24:43,368 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-05-15T15:24:43,369 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-05-15T15:24:43,370 even if it does not contain any `.py` files. 2024-05-15T15:24:43,370 On the other hand, currently there is no concept of package data 2024-05-15T15:24:43,371 directory, all directories are treated like packages. 2024-05-15T15:24:43,372 ******************************************************************************** 2024-05-15T15:24:43,373 !! 2024-05-15T15:24:43,373 check.warn(importable) 2024-05-15T15:24:43,374 copying tests/1.json -> build/lib/tests 2024-05-15T15:24:43,374 copying tests/markers_config.yaml -> build/lib/tests 2024-05-15T15:24:43,375 creating build/lib/tests/densities/data 2024-05-15T15:24:43,376 creating build/lib/tests/densities/data/meta 2024-05-15T15:24:43,376 copying tests/densities/data/meta/layers.tsv -> build/lib/tests/densities/data/meta 2024-05-15T15:24:43,377 copying tests/densities/data/meta/mapping.tsv -> build/lib/tests/densities/data/meta 2024-05-15T15:24:43,377 copying tests/densities/data/meta/mapping_exc_only.tsv -> build/lib/tests/densities/data/meta 2024-05-15T15:24:43,378 creating build/lib/tests/densities/data/mtypes 2024-05-15T15:24:43,378 copying tests/densities/data/mtypes/BP.dat -> build/lib/tests/densities/data/mtypes 2024-05-15T15:24:43,379 copying tests/densities/data/mtypes/L2_IPC.dat -> build/lib/tests/densities/data/mtypes 2024-05-15T15:24:43,380 copying tests/densities/data/mtypes/L2_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2024-05-15T15:24:43,380 copying tests/densities/data/mtypes/L3_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2024-05-15T15:24:43,381 copying tests/densities/data/mtypes/L3_TPC-B.dat -> build/lib/tests/densities/data/mtypes 2024-05-15T15:24:43,381 copying tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/lib/tests/densities/data/mtypes 2024-05-15T15:24:43,382 copying atlas_densities/app/data/1.json -> build/lib/atlas_densities/app/data 2024-05-15T15:24:43,383 creating build/lib/atlas_densities/app/data/markers 2024-05-15T15:24:43,383 copying atlas_densities/app/data/markers/README.rst -> build/lib/atlas_densities/app/data/markers 2024-05-15T15:24:43,384 copying atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2024-05-15T15:24:43,384 copying atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2024-05-15T15:24:43,385 copying atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/lib/atlas_densities/app/data/markers 2024-05-15T15:24:43,386 copying atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/lib/atlas_densities/app/data/markers 2024-05-15T15:24:43,386 creating build/lib/atlas_densities/app/data/measurements 2024-05-15T15:24:43,386 copying atlas_densities/app/data/measurements/README.rst -> build/lib/atlas_densities/app/data/measurements 2024-05-15T15:24:43,387 copying atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/lib/atlas_densities/app/data/measurements 2024-05-15T15:24:43,387 copying atlas_densities/app/data/measurements/homogenous_regions.csv -> build/lib/atlas_densities/app/data/measurements 2024-05-15T15:24:43,388 copying atlas_densities/app/data/measurements/measurements.csv -> build/lib/atlas_densities/app/data/measurements 2024-05-15T15:24:43,388 copying atlas_densities/app/data/measurements/mmc1.xlsx -> build/lib/atlas_densities/app/data/measurements 2024-05-15T15:24:43,389 copying atlas_densities/app/data/measurements/mmc3.xlsx -> build/lib/atlas_densities/app/data/measurements 2024-05-15T15:24:43,389 copying atlas_densities/app/data/measurements/non_density_measurements.csv -> build/lib/atlas_densities/app/data/measurements 2024-05-15T15:24:43,390 copying atlas_densities/app/data/measurements/std_cells.json -> build/lib/atlas_densities/app/data/measurements 2024-05-15T15:24:43,390 creating build/lib/atlas_densities/app/data/metadata 2024-05-15T15:24:43,391 copying atlas_densities/app/data/metadata/README.txt -> build/lib/atlas_densities/app/data/metadata 2024-05-15T15:24:43,391 copying atlas_densities/app/data/metadata/ca1_metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-05-15T15:24:43,392 copying atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json -> build/lib/atlas_densities/app/data/metadata 2024-05-15T15:24:43,392 copying atlas_densities/app/data/metadata/group_ids.json -> build/lib/atlas_densities/app/data/metadata 2024-05-15T15:24:43,393 copying atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-05-15T15:24:43,393 copying atlas_densities/app/data/metadata/isocortex_metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-05-15T15:24:43,394 copying atlas_densities/app/data/metadata/metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-05-15T15:24:43,394 copying atlas_densities/app/data/metadata/thalamus_metadata.json -> build/lib/atlas_densities/app/data/metadata 2024-05-15T15:24:43,395 creating build/lib/atlas_densities/app/data/mtypes 2024-05-15T15:24:43,395 copying atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv -> build/lib/atlas_densities/app/data/mtypes 2024-05-15T15:24:43,396 copying atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/lib/atlas_densities/app/data/mtypes 2024-05-15T15:24:43,397 creating build/lib/atlas_densities/app/data/mtypes/composition 2024-05-15T15:24:43,397 copying atlas_densities/app/data/mtypes/composition/README.rst -> build/lib/atlas_densities/app/data/mtypes/composition 2024-05-15T15:24:43,398 copying atlas_densities/app/data/mtypes/composition/composition.yaml -> build/lib/atlas_densities/app/data/mtypes/composition 2024-05-15T15:24:43,398 copying atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/lib/atlas_densities/app/data/mtypes/composition 2024-05-15T15:24:43,399 creating build/lib/atlas_densities/app/data/mtypes/density_profiles 2024-05-15T15:24:43,400 copying atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/lib/atlas_densities/app/data/mtypes/density_profiles 2024-05-15T15:24:43,400 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2024-05-15T15:24:43,401 copying atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2024-05-15T15:24:43,401 copying atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2024-05-15T15:24:43,402 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,402 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,403 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,403 copying atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,404 copying atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,404 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,405 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,405 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,406 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,406 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,407 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,408 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,409 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,413 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,417 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,418 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,419 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,419 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,420 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,420 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,421 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,421 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,422 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,422 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,423 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,423 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,424 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,424 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,424 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,425 copying atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,425 copying atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,426 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,426 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,427 copying atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,428 creating build/lib/atlas_densities/app/data/mtypes/probability_map 2024-05-15T15:24:43,428 copying atlas_densities/app/data/mtypes/probability_map/README.rst -> build/lib/atlas_densities/app/data/mtypes/probability_map 2024-05-15T15:24:43,429 copying atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/lib/atlas_densities/app/data/mtypes/probability_map 2024-05-15T15:24:43,453 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-05-15T15:24:43,454 !! 2024-05-15T15:24:43,455 ******************************************************************************** 2024-05-15T15:24:43,456 Please avoid running ``setup.py`` directly. 2024-05-15T15:24:43,457 Instead, use pypa/build, pypa/installer or other 2024-05-15T15:24:43,457 standards-based tools. 2024-05-15T15:24:43,458 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-05-15T15:24:43,459 ******************************************************************************** 2024-05-15T15:24:43,460 !! 2024-05-15T15:24:43,460 self.initialize_options() 2024-05-15T15:24:43,483 installing to build/bdist.linux-armv7l/wheel 2024-05-15T15:24:43,484 running install 2024-05-15T15:24:43,507 running install_lib 2024-05-15T15:24:43,536 creating build/bdist.linux-armv7l 2024-05-15T15:24:43,537 creating build/bdist.linux-armv7l/wheel 2024-05-15T15:24:43,539 creating build/bdist.linux-armv7l/wheel/tests 2024-05-15T15:24:43,540 creating build/bdist.linux-armv7l/wheel/tests/app 2024-05-15T15:24:43,541 copying build/lib/tests/app/test_refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-05-15T15:24:43,544 copying build/lib/tests/app/__init__.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-05-15T15:24:43,546 copying build/lib/tests/app/test_combination.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-05-15T15:24:43,548 copying build/lib/tests/app/test_cell_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-05-15T15:24:43,551 copying build/lib/tests/app/test_mtype_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2024-05-15T15:24:43,554 copying build/lib/tests/markers_config.yaml -> build/bdist.linux-armv7l/wheel/tests 2024-05-15T15:24:43,555 copying build/lib/tests/mocking_tools.py -> build/bdist.linux-armv7l/wheel/tests 2024-05-15T15:24:43,557 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2024-05-15T15:24:43,559 copying build/lib/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/tests 2024-05-15T15:24:43,561 copying build/lib/tests/1.json -> build/bdist.linux-armv7l/wheel/tests 2024-05-15T15:24:43,575 creating build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,576 copying build/lib/tests/densities/test_refined_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,578 copying build/lib/tests/densities/test_cell_counts.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,579 copying build/lib/tests/densities/test_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,582 copying build/lib/tests/densities/test_excel_reader.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,584 creating build/bdist.linux-armv7l/wheel/tests/densities/data 2024-05-15T15:24:43,585 creating build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2024-05-15T15:24:43,586 copying build/lib/tests/densities/data/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2024-05-15T15:24:43,588 copying build/lib/tests/densities/data/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2024-05-15T15:24:43,590 copying build/lib/tests/densities/data/meta/mapping_exc_only.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2024-05-15T15:24:43,592 creating build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-05-15T15:24:43,594 copying build/lib/tests/densities/data/mtypes/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-05-15T15:24:43,596 copying build/lib/tests/densities/data/mtypes/BP.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-05-15T15:24:43,597 copying build/lib/tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-05-15T15:24:43,599 copying build/lib/tests/densities/data/mtypes/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-05-15T15:24:43,601 copying build/lib/tests/densities/data/mtypes/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-05-15T15:24:43,603 copying build/lib/tests/densities/data/mtypes/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2024-05-15T15:24:43,604 copying build/lib/tests/densities/test_glia_densities.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,607 copying build/lib/tests/densities/test_fitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,609 copying build/lib/tests/densities/test_optimization_initialization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,612 copying build/lib/tests/densities/test_measurement_to_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,614 copying build/lib/tests/densities/test_mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,617 copying build/lib/tests/densities/test_inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,619 copying build/lib/tests/densities/test_excitatory_inhibitory_splitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,621 copying build/lib/tests/densities/__init__.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,623 copying build/lib/tests/densities/test_inhibitory_neuron_density_optimization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,626 copying build/lib/tests/densities/test_mtype_densities_from_map.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,628 copying build/lib/tests/densities/test_utils.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,631 copying build/lib/tests/densities/test_mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,633 copying build/lib/tests/densities/test_cell_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2024-05-15T15:24:43,636 creating build/bdist.linux-armv7l/wheel/tests/combination 2024-05-15T15:24:43,636 copying build/lib/tests/combination/test_annotations_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2024-05-15T15:24:43,638 copying build/lib/tests/combination/test_markers_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2024-05-15T15:24:43,640 copying build/lib/tests/combination/__init__.py -> build/bdist.linux-armv7l/wheel/tests/combination 2024-05-15T15:24:43,642 copying build/lib/tests/utils.py -> build/bdist.linux-armv7l/wheel/tests 2024-05-15T15:24:43,644 creating build/bdist.linux-armv7l/wheel/atlas_densities 2024-05-15T15:24:43,645 copying build/lib/atlas_densities/exceptions.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2024-05-15T15:24:43,647 creating build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-05-15T15:24:43,649 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2024-05-15T15:24:43,650 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-05-15T15:24:43,651 copying build/lib/atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-05-15T15:24:43,655 copying build/lib/atlas_densities/app/data/measurements/mmc1.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-05-15T15:24:43,662 copying build/lib/atlas_densities/app/data/measurements/measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-05-15T15:24:43,679 copying build/lib/atlas_densities/app/data/measurements/mmc3.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-05-15T15:24:43,686 copying build/lib/atlas_densities/app/data/measurements/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-05-15T15:24:43,688 copying build/lib/atlas_densities/app/data/measurements/homogenous_regions.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-05-15T15:24:43,690 copying build/lib/atlas_densities/app/data/measurements/std_cells.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-05-15T15:24:43,697 copying build/lib/atlas_densities/app/data/measurements/non_density_measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2024-05-15T15:24:43,700 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2024-05-15T15:24:43,701 copying build/lib/atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2024-05-15T15:24:43,703 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2024-05-15T15:24:43,704 copying build/lib/atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2024-05-15T15:24:43,706 copying build/lib/atlas_densities/app/data/mtypes/composition/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2024-05-15T15:24:43,708 copying build/lib/atlas_densities/app/data/mtypes/composition/composition.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2024-05-15T15:24:43,711 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2024-05-15T15:24:43,712 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2024-05-15T15:24:43,713 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2024-05-15T15:24:43,715 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2024-05-15T15:24:43,718 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,719 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,721 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,723 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,725 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,726 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,728 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,730 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,732 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,734 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,736 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,738 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,739 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,742 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,744 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,746 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,748 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,750 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,752 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,754 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,755 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,757 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,759 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,761 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,762 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,764 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,766 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,768 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,770 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,772 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,774 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,775 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,778 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,779 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2024-05-15T15:24:43,782 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2024-05-15T15:24:43,784 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2024-05-15T15:24:43,785 copying build/lib/atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2024-05-15T15:24:43,801 copying build/lib/atlas_densities/app/data/mtypes/probability_map/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2024-05-15T15:24:43,803 copying build/lib/atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2024-05-15T15:24:43,806 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-05-15T15:24:43,807 copying build/lib/atlas_densities/app/data/metadata/metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-05-15T15:24:43,809 copying build/lib/atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-05-15T15:24:43,811 copying build/lib/atlas_densities/app/data/metadata/README.txt -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-05-15T15:24:43,813 copying build/lib/atlas_densities/app/data/metadata/isocortex_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-05-15T15:24:43,815 copying build/lib/atlas_densities/app/data/metadata/ca1_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-05-15T15:24:43,816 copying build/lib/atlas_densities/app/data/metadata/group_ids.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-05-15T15:24:43,818 copying build/lib/atlas_densities/app/data/metadata/thalamus_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-05-15T15:24:43,820 copying build/lib/atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2024-05-15T15:24:43,822 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-05-15T15:24:43,823 copying build/lib/atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-05-15T15:24:43,826 copying build/lib/atlas_densities/app/data/markers/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-05-15T15:24:43,828 copying build/lib/atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-05-15T15:24:43,830 copying build/lib/atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-05-15T15:24:43,832 copying build/lib/atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2024-05-15T15:24:43,834 copying build/lib/atlas_densities/app/data/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2024-05-15T15:24:43,836 copying build/lib/atlas_densities/app/data/1.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2024-05-15T15:24:43,853 copying build/lib/atlas_densities/app/mtype_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-05-15T15:24:43,855 copying build/lib/atlas_densities/app/combination.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-05-15T15:24:43,858 copying build/lib/atlas_densities/app/cli.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-05-15T15:24:43,860 copying build/lib/atlas_densities/app/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-05-15T15:24:43,861 copying build/lib/atlas_densities/app/cell_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-05-15T15:24:43,864 copying build/lib/atlas_densities/app/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2024-05-15T15:24:43,866 copying build/lib/atlas_densities/version.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2024-05-15T15:24:43,868 copying build/lib/atlas_densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2024-05-15T15:24:43,871 creating build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,872 copying build/lib/atlas_densities/densities/mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,874 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,876 copying build/lib/atlas_densities/densities/glia_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,878 copying build/lib/atlas_densities/densities/inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,880 copying build/lib/atlas_densities/densities/cell_counts.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,882 copying build/lib/atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,885 copying build/lib/atlas_densities/densities/mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,888 copying build/lib/atlas_densities/densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,889 copying build/lib/atlas_densities/densities/measurement_to_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,892 copying build/lib/atlas_densities/densities/excitatory_inhibitory_splitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,895 copying build/lib/atlas_densities/densities/excel_reader.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,898 creating build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2024-05-15T15:24:43,899 copying build/lib/atlas_densities/densities/mtype_densities_from_map/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2024-05-15T15:24:43,901 copying build/lib/atlas_densities/densities/mtype_densities_from_map/create.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2024-05-15T15:24:43,904 copying build/lib/atlas_densities/densities/mtype_densities_from_map/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2024-05-15T15:24:43,906 copying build/lib/atlas_densities/densities/fitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,908 copying build/lib/atlas_densities/densities/cell_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,911 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,914 copying build/lib/atlas_densities/densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2024-05-15T15:24:43,917 creating build/bdist.linux-armv7l/wheel/atlas_densities/combination 2024-05-15T15:24:43,918 copying build/lib/atlas_densities/combination/markers_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2024-05-15T15:24:43,920 copying build/lib/atlas_densities/combination/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2024-05-15T15:24:43,922 copying build/lib/atlas_densities/combination/annotations_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2024-05-15T15:24:43,925 copying build/lib/atlas_densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2024-05-15T15:24:43,927 running install_egg_info 2024-05-15T15:24:43,959 Copying atlas_densities.egg-info to build/bdist.linux-armv7l/wheel/atlas_densities-0.2.5-py3.11.egg-info 2024-05-15T15:24:43,971 running install_scripts 2024-05-15T15:24:43,994 creating build/bdist.linux-armv7l/wheel/atlas_densities-0.2.5.dist-info/WHEEL 2024-05-15T15:24:43,997 creating '/tmp/pip-wheel-dzi6g41g/atlas_densities-0.2.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-05-15T15:24:43,999 adding 'atlas_densities/__init__.py' 2024-05-15T15:24:44,001 adding 'atlas_densities/exceptions.py' 2024-05-15T15:24:44,002 adding 'atlas_densities/utils.py' 2024-05-15T15:24:44,004 adding 'atlas_densities/version.py' 2024-05-15T15:24:44,006 adding 'atlas_densities/app/__init__.py' 2024-05-15T15:24:44,011 adding 'atlas_densities/app/cell_densities.py' 2024-05-15T15:24:44,012 adding 'atlas_densities/app/cli.py' 2024-05-15T15:24:44,014 adding 'atlas_densities/app/combination.py' 2024-05-15T15:24:44,017 adding 'atlas_densities/app/mtype_densities.py' 2024-05-15T15:24:44,018 adding 'atlas_densities/app/utils.py' 2024-05-15T15:24:44,046 adding 'atlas_densities/app/data/1.json' 2024-05-15T15:24:44,052 adding 'atlas_densities/app/data/__init__.py' 2024-05-15T15:24:44,054 adding 'atlas_densities/app/data/markers/README.rst' 2024-05-15T15:24:44,055 adding 'atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml' 2024-05-15T15:24:44,056 adding 'atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml' 2024-05-15T15:24:44,057 adding 'atlas_densities/app/data/markers/realigned_slices_bbp.json' 2024-05-15T15:24:44,059 adding 'atlas_densities/app/data/markers/realigned_slices_ccfv2.json' 2024-05-15T15:24:44,061 adding 'atlas_densities/app/data/measurements/README.rst' 2024-05-15T15:24:44,067 adding 'atlas_densities/app/data/measurements/gaba_papers.xlsx' 2024-05-15T15:24:44,069 adding 'atlas_densities/app/data/measurements/homogenous_regions.csv' 2024-05-15T15:24:44,109 adding 'atlas_densities/app/data/measurements/measurements.csv' 2024-05-15T15:24:44,156 adding 'atlas_densities/app/data/measurements/mmc1.xlsx' 2024-05-15T15:24:44,194 adding 'atlas_densities/app/data/measurements/mmc3.xlsx' 2024-05-15T15:24:44,198 adding 'atlas_densities/app/data/measurements/non_density_measurements.csv' 2024-05-15T15:24:44,212 adding 'atlas_densities/app/data/measurements/std_cells.json' 2024-05-15T15:24:44,215 adding 'atlas_densities/app/data/metadata/README.txt' 2024-05-15T15:24:44,216 adding 'atlas_densities/app/data/metadata/ca1_metadata.json' 2024-05-15T15:24:44,217 adding 'atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json' 2024-05-15T15:24:44,219 adding 'atlas_densities/app/data/metadata/group_ids.json' 2024-05-15T15:24:44,220 adding 'atlas_densities/app/data/metadata/isocortex_23_metadata.json' 2024-05-15T15:24:44,221 adding 'atlas_densities/app/data/metadata/isocortex_metadata.json' 2024-05-15T15:24:44,223 adding 'atlas_densities/app/data/metadata/metadata.json' 2024-05-15T15:24:44,224 adding 'atlas_densities/app/data/metadata/thalamus_metadata.json' 2024-05-15T15:24:44,226 adding 'atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv' 2024-05-15T15:24:44,227 adding 'atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml' 2024-05-15T15:24:44,229 adding 'atlas_densities/app/data/mtypes/composition/README.rst' 2024-05-15T15:24:44,231 adding 'atlas_densities/app/data/mtypes/composition/composition.yaml' 2024-05-15T15:24:44,232 adding 'atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv' 2024-05-15T15:24:44,234 adding 'atlas_densities/app/data/mtypes/density_profiles/README.rst' 2024-05-15T15:24:44,235 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv' 2024-05-15T15:24:44,237 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv' 2024-05-15T15:24:44,239 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat' 2024-05-15T15:24:44,240 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat' 2024-05-15T15:24:44,241 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat' 2024-05-15T15:24:44,243 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat' 2024-05-15T15:24:44,244 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat' 2024-05-15T15:24:44,245 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat' 2024-05-15T15:24:44,246 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat' 2024-05-15T15:24:44,248 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat' 2024-05-15T15:24:44,249 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat' 2024-05-15T15:24:44,250 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat' 2024-05-15T15:24:44,251 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat' 2024-05-15T15:24:44,252 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat' 2024-05-15T15:24:44,253 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat' 2024-05-15T15:24:44,255 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat' 2024-05-15T15:24:44,256 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat' 2024-05-15T15:24:44,257 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat' 2024-05-15T15:24:44,258 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat' 2024-05-15T15:24:44,259 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat' 2024-05-15T15:24:44,260 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat' 2024-05-15T15:24:44,262 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat' 2024-05-15T15:24:44,263 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat' 2024-05-15T15:24:44,264 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat' 2024-05-15T15:24:44,265 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat' 2024-05-15T15:24:44,266 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat' 2024-05-15T15:24:44,268 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat' 2024-05-15T15:24:44,269 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat' 2024-05-15T15:24:44,270 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat' 2024-05-15T15:24:44,271 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat' 2024-05-15T15:24:44,273 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat' 2024-05-15T15:24:44,274 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat' 2024-05-15T15:24:44,275 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat' 2024-05-15T15:24:44,276 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat' 2024-05-15T15:24:44,278 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat' 2024-05-15T15:24:44,280 adding 'atlas_densities/app/data/mtypes/probability_map/README.rst' 2024-05-15T15:24:44,304 adding 'atlas_densities/app/data/mtypes/probability_map/probability_map.csv' 2024-05-15T15:24:44,312 adding 'atlas_densities/combination/__init__.py' 2024-05-15T15:24:44,314 adding 'atlas_densities/combination/annotations_combinator.py' 2024-05-15T15:24:44,315 adding 'atlas_densities/combination/markers_combinator.py' 2024-05-15T15:24:44,317 adding 'atlas_densities/densities/__init__.py' 2024-05-15T15:24:44,319 adding 'atlas_densities/densities/cell_counts.py' 2024-05-15T15:24:44,321 adding 'atlas_densities/densities/cell_density.py' 2024-05-15T15:24:44,324 adding 'atlas_densities/densities/excel_reader.py' 2024-05-15T15:24:44,326 adding 'atlas_densities/densities/excitatory_inhibitory_splitting.py' 2024-05-15T15:24:44,330 adding 'atlas_densities/densities/fitting.py' 2024-05-15T15:24:44,332 adding 'atlas_densities/densities/glia_densities.py' 2024-05-15T15:24:44,333 adding 'atlas_densities/densities/inhibitory_neuron_densities_helper.py' 2024-05-15T15:24:44,338 adding 'atlas_densities/densities/inhibitory_neuron_densities_optimization.py' 2024-05-15T15:24:44,340 adding 'atlas_densities/densities/inhibitory_neuron_density.py' 2024-05-15T15:24:44,342 adding 'atlas_densities/densities/measurement_to_density.py' 2024-05-15T15:24:44,344 adding 'atlas_densities/densities/mtype_densities_from_composition.py' 2024-05-15T15:24:44,347 adding 'atlas_densities/densities/mtype_densities_from_profiles.py' 2024-05-15T15:24:44,350 adding 'atlas_densities/densities/refined_inhibitory_neuron_densities.py' 2024-05-15T15:24:44,353 adding 'atlas_densities/densities/utils.py' 2024-05-15T15:24:44,354 adding 'atlas_densities/densities/mtype_densities_from_map/__init__.py' 2024-05-15T15:24:44,356 adding 'atlas_densities/densities/mtype_densities_from_map/create.py' 2024-05-15T15:24:44,357 adding 'atlas_densities/densities/mtype_densities_from_map/utils.py' 2024-05-15T15:24:44,387 adding 'tests/1.json' 2024-05-15T15:24:44,392 adding 'tests/__init__.py' 2024-05-15T15:24:44,393 adding 'tests/markers_config.yaml' 2024-05-15T15:24:44,394 adding 'tests/mocking_tools.py' 2024-05-15T15:24:44,396 adding 'tests/test_utils.py' 2024-05-15T15:24:44,397 adding 'tests/utils.py' 2024-05-15T15:24:44,399 adding 'tests/app/__init__.py' 2024-05-15T15:24:44,400 adding 'tests/app/test_cell_densities.py' 2024-05-15T15:24:44,402 adding 'tests/app/test_combination.py' 2024-05-15T15:24:44,404 adding 'tests/app/test_mtype_densities.py' 2024-05-15T15:24:44,405 adding 'tests/app/test_refined_inhibitory_neuron_densities.py' 2024-05-15T15:24:44,407 adding 'tests/combination/__init__.py' 2024-05-15T15:24:44,408 adding 'tests/combination/test_annotations_combinator.py' 2024-05-15T15:24:44,410 adding 'tests/combination/test_markers_combinator.py' 2024-05-15T15:24:44,411 adding 'tests/densities/__init__.py' 2024-05-15T15:24:44,412 adding 'tests/densities/test_cell_counts.py' 2024-05-15T15:24:44,414 adding 'tests/densities/test_cell_density.py' 2024-05-15T15:24:44,416 adding 'tests/densities/test_excel_reader.py' 2024-05-15T15:24:44,418 adding 'tests/densities/test_excitatory_inhibitory_splitting.py' 2024-05-15T15:24:44,420 adding 'tests/densities/test_fitting.py' 2024-05-15T15:24:44,422 adding 'tests/densities/test_glia_densities.py' 2024-05-15T15:24:44,423 adding 'tests/densities/test_inhibitory_neuron_densities_helper.py' 2024-05-15T15:24:44,425 adding 'tests/densities/test_inhibitory_neuron_density.py' 2024-05-15T15:24:44,427 adding 'tests/densities/test_inhibitory_neuron_density_optimization.py' 2024-05-15T15:24:44,428 adding 'tests/densities/test_measurement_to_density.py' 2024-05-15T15:24:44,430 adding 'tests/densities/test_mtype_densities_from_composition.py' 2024-05-15T15:24:44,431 adding 'tests/densities/test_mtype_densities_from_map.py' 2024-05-15T15:24:44,433 adding 'tests/densities/test_mtype_densities_from_profiles.py' 2024-05-15T15:24:44,435 adding 'tests/densities/test_optimization_initialization.py' 2024-05-15T15:24:44,437 adding 'tests/densities/test_refined_inhibitory_neuron_density.py' 2024-05-15T15:24:44,439 adding 'tests/densities/test_utils.py' 2024-05-15T15:24:44,441 adding 'tests/densities/data/meta/layers.tsv' 2024-05-15T15:24:44,443 adding 'tests/densities/data/meta/mapping.tsv' 2024-05-15T15:24:44,444 adding 'tests/densities/data/meta/mapping_exc_only.tsv' 2024-05-15T15:24:44,446 adding 'tests/densities/data/mtypes/BP.dat' 2024-05-15T15:24:44,447 adding 'tests/densities/data/mtypes/L2_IPC.dat' 2024-05-15T15:24:44,448 adding 'tests/densities/data/mtypes/L2_TPC-A.dat' 2024-05-15T15:24:44,450 adding 'tests/densities/data/mtypes/L3_TPC-A.dat' 2024-05-15T15:24:44,451 adding 'tests/densities/data/mtypes/L3_TPC-B.dat' 2024-05-15T15:24:44,453 adding 'tests/densities/data/mtypes/mtype-taxonomy.tsv' 2024-05-15T15:24:44,454 adding 'atlas_densities-0.2.5.dist-info/AUTHORS.txt' 2024-05-15T15:24:44,457 adding 'atlas_densities-0.2.5.dist-info/LICENSE.txt' 2024-05-15T15:24:44,459 adding 'atlas_densities-0.2.5.dist-info/METADATA' 2024-05-15T15:24:44,460 adding 'atlas_densities-0.2.5.dist-info/WHEEL' 2024-05-15T15:24:44,462 adding 'atlas_densities-0.2.5.dist-info/entry_points.txt' 2024-05-15T15:24:44,463 adding 'atlas_densities-0.2.5.dist-info/top_level.txt' 2024-05-15T15:24:44,466 adding 'atlas_densities-0.2.5.dist-info/RECORD' 2024-05-15T15:24:44,480 removing build/bdist.linux-armv7l/wheel 2024-05-15T15:24:44,645 Building wheel for atlas-densities (setup.py): finished with status 'done' 2024-05-15T15:24:44,658 Created wheel for atlas-densities: filename=atlas_densities-0.2.5-py3-none-any.whl size=1074150 sha256=4b268c0ee1b1007e7b7a4748da974c59cba9e312052c622a57236cbbf959952e 2024-05-15T15:24:44,660 Stored in directory: /tmp/pip-ephem-wheel-cache-6s36_579/wheels/f7/d7/89/8728c1a1bdd308f5ad56316c50866335042276e39b3f466634 2024-05-15T15:24:44,678 Successfully built atlas-densities 2024-05-15T15:24:44,717 Removed build tracker: '/tmp/pip-build-tracker-ip0929wb'